******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= HK.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ cds-QMW89411.1 1.0000 100 noc 1.0000 100 cds-QMW89421.1 1.0000 100 cds-QMW89429.1 1.0000 100 rpsR 1.0000 100 cds-QMW89434.1 1.0000 100 cds-QMW89440.1 1.0000 100 cds-QMW89470.1 1.0000 100 cds-QMW89481.1 1.0000 100 cds-QMW89491.1 1.0000 100 cds-QMW89506.1 1.0000 100 cds-QMW89509.1 1.0000 100 cds-QMW89512.1 1.0000 100 cds-QMW92741.1 1.0000 100 dnaX 1.0000 100 cds-QMW89563.1 1.0000 100 cds-QMW89564.1 1.0000 100 fusA 1.0000 100 cds-QMW89585.1 1.0000 100 cds-QMW89590.1 1.0000 100 dnaE 1.0000 100 dnaE_2 1.0000 100 cds-FF104_01395 1.0000 100 cds-QMW89659.1 1.0000 100 cds-QMW89795.1 1.0000 100 cds-QMW89800.1 1.0000 100 cds-QMW89801.1 1.0000 100 cds-QMW89825.1 1.0000 100 cds-QMW89829.1 1.0000 100 cds-QMW89831.1 1.0000 100 cds-QMW89835.1 1.0000 100 cds-QMW89836.1 1.0000 100 cds-QMW89844.1 1.0000 100 cds-QMW89846.1 1.0000 100 cds-QMW89856.1 1.0000 100 cds-QMW89882.1 1.0000 100 cds-QMW89912.1 1.0000 100 cds-QMW89923.1 1.0000 100 cds-QMW89934.1 1.0000 100 cds-QMW89950.1 1.0000 100 cds-QMW89955.1 1.0000 100 cds-QMW89976.1 1.0000 100 cds-QMW90014.1 1.0000 100 cds-QMW90031.1 1.0000 100 cds-QMW90045.1 1.0000 100 cds-QMW90056.1 1.0000 100 cds-QMW90069.1 1.0000 100 cds-QMW90092.1 1.0000 100 cds-QMW90097.1 1.0000 100 cds-QMW90108.1 1.0000 100 cds-QMW90118.1 1.0000 100 cds-QMW90120.1 1.0000 100 cds-QMW90129.1 1.0000 100 cds-QMW90136.1 1.0000 100 cds-QMW90176.1 1.0000 100 polA 1.0000 100 cds-QMW90184.1 1.0000 100 cds-QMW90185.1 1.0000 100 cds-QMW90187.1 1.0000 100 cds-QMW90195.1 1.0000 100 cds-QMW90263.1 1.0000 100 cds-QMW90264.1 1.0000 100 ychF 1.0000 100 cds-QMW90291.1 1.0000 100 cds-QMW90307.1 1.0000 100 cds-QMW90335.1 1.0000 100 cds-QMW90352.1 1.0000 100 cds-QMW90369.1 1.0000 100 sigK 1.0000 100 sigE 1.0000 100 sigG 1.0000 100 nrdR 1.0000 100 cds-QMW90411.1 1.0000 100 rpmB 1.0000 100 cds-QMW90426.1 1.0000 100 cds-QMW90436.1 1.0000 100 rpsP 1.0000 100 cds-QMW90449.1 1.0000 100 codY 1.0000 100 rpsB 1.0000 100 cds-QMW90457.1 1.0000 100 cds-QMW90466.1 1.0000 100 nusA 1.0000 100 cds-QMW90469.1 1.0000 100 cds-QMW90470.1 1.0000 100 infB 1.0000 100 rpsO 1.0000 100 cds-QMW90483.1 1.0000 100 cds-QMW90534.1 1.0000 100 cds-QMW90535.1 1.0000 100 cds-QMW90592.1 1.0000 100 cds-QMW90613.1 1.0000 100 cds-QMW90650.1 1.0000 100 cds-QMW90659.1 1.0000 100 rpmI 1.0000 100 rplT 1.0000 100 cds-QMW90690.1 1.0000 100 cds-QMW90710.1 1.0000 100 cds-QMW90719.1 1.0000 100 cds-QMW90732.1 1.0000 100 cds-QMW90823.1 1.0000 100 cds-QMW90839.1 1.0000 100 cds-QMW90877.1 1.0000 100 cds-QMW90878.1 1.0000 100 cds-QMW90886.1 1.0000 100 cds-QMW90920.1 1.0000 100 tenA 1.0000 100 cds-QMW90942.1 1.0000 100 cds-QMW90950.1 1.0000 100 cds-QMW90990.1 1.0000 100 lexA 1.0000 100 cds-QMW91035.1 1.0000 100 cds-QMW91044.1 1.0000 100 cds-QMW91064.1 1.0000 100 cds-QMW91073.1 1.0000 100 cds-QMW91080.1 1.0000 100 cds-QMW91096.1 1.0000 100 cds-QMW91116.1 1.0000 100 cds-QMW91117.1 1.0000 100 cds-QMW91118.1 1.0000 100 cds-QMW91120.1 1.0000 100 cds-QMW91124.1 1.0000 100 cds-QMW91140.1 1.0000 100 cds-QMW91142.1 1.0000 100 cds-QMW91150.1 1.0000 100 cds-QMW91152.1 1.0000 100 cds-QMW91157.1 1.0000 100 cds-QMW91162.1 1.0000 100 cds-QMW91175.1 1.0000 100 cds-FF104_09470 1.0000 100 cds-QMW91179.1 1.0000 100 cds-QMW91181.1 1.0000 100 cds-QMW91196.1 1.0000 100 cds-QMW91201.1 1.0000 100 cds-QMW91214.1 1.0000 100 cds-QMW91220.1 1.0000 100 cds-QMW91223.1 1.0000 100 cds-QMW91231.1 1.0000 100 cds-QMW91250.1 1.0000 100 cds-QMW91257.1 1.0000 100 cds-QMW91265.1 1.0000 100 cds-QMW91278.1 1.0000 100 cds-QMW91290.1 1.0000 100 sigI 1.0000 100 cds-QMW91328.1 1.0000 100 cds-QMW91346.1 1.0000 100 cds-QMW91349.1 1.0000 100 nusB 1.0000 100 efp 1.0000 100 cds-QMW91419.1 1.0000 100 cds-QMW91447.1 1.0000 100 cds-QMW91517.1 1.0000 100 rpsD 1.0000 100 cds-QMW91623.1 1.0000 100 cds-QMW91708.1 1.0000 100 cds-QMW91717.1 1.0000 100 cds-QMW91793.1 1.0000 100 cds-QMW91809.1 1.0000 100 cds-QMW91815.1 1.0000 100 cds-QMW91816.1 1.0000 100 cds-QMW91870.1 1.0000 100 cds-QMW91892.1 1.0000 100 cds-QMW91897.1 1.0000 100 cds-QMW91904.1 1.0000 100 cds-QMW91905.1 1.0000 100 cds-QMW91910.1 1.0000 100 cds-QMW91936.1 1.0000 100 cds-QMW91938.1 1.0000 100 cds-QMW91946.1 1.0000 100 cds-QMW91947.1 1.0000 100 cds-QMW91952.1 1.0000 100 cds-QMW91975.1 1.0000 100 cds-QMW91977.1 1.0000 100 cds-QMW92005.1 1.0000 100 cds-QMW92014.1 1.0000 100 cds-QMW92789.1 1.0000 100 cds-QMW92030.1 1.0000 100 rpoD 1.0000 100 cds-QMW92052.1 1.0000 100 cds-QMW92056.1 1.0000 100 hrcA 1.0000 100 rpsT 1.0000 100 holA 1.0000 100 sigF 1.0000 100 cds-QMW92080.1 1.0000 100 cds-QMW92790.1 1.0000 100 rfbF 1.0000 100 cds-QMW92149.1 1.0000 100 cds-QMW92169.1 1.0000 100 cds-QMW92179.1 1.0000 100 cds-QMW92190.1 1.0000 100 cds-QMW92205.1 1.0000 100 cds-QMW92224.1 1.0000 100 cds-QMW92225.1 1.0000 100 rfbF_2 1.0000 100 cds-QMW92264.1 1.0000 100 cds-QMW92269.1 1.0000 100 cds-QMW92270.1 1.0000 100 rplU 1.0000 100 rpsA 1.0000 100 cds-QMW92303.1 1.0000 100 cds-QMW92312.1 1.0000 100 atpC 1.0000 100 atpD 1.0000 100 cds-QMW92334.1 1.0000 100 cds-QMW92335.1 1.0000 100 cds-QMW92336.1 1.0000 100 cds-QMW92337.1 1.0000 100 atpE 1.0000 100 cds-QMW92339.1 1.0000 100 cds-QMW92346.1 1.0000 100 rpmE 1.0000 100 cds-QMW92353.1 1.0000 100 cds-QMW92384.1 1.0000 100 cds-QMW92390.1 1.0000 100 cds-QMW92418.1 1.0000 100 cds-QMW92436.1 1.0000 100 cds-QMW92442.1 1.0000 100 cds-QMW92444.1 1.0000 100 cds-QMW92448.1 1.0000 100 cds-QMW92457.1 1.0000 100 cds-QMW92486.1 1.0000 100 cds-QMW92492.1 1.0000 100 cds-QMW92496.1 1.0000 100 cds-QMW92515.1 1.0000 100 rpsI 1.0000 100 rplM 1.0000 100 cds-QMW92544.1 1.0000 100 cds-QMW92545.1 1.0000 100 rpsD_2 1.0000 100 rpsK 1.0000 100 rpsM 1.0000 100 rpmJ 1.0000 100 infA 1.0000 100 cds-QMW92551.1 1.0000 100 cds-QMW92555.1 1.0000 100 rpmD 1.0000 100 cds-QMW92557.1 1.0000 100 cds-QMW92558.1 1.0000 100 cds-QMW92559.1 1.0000 100 rpsH 1.0000 100 cds-QMW92561.1 1.0000 100 rplE 1.0000 100 cds-QMW92563.1 1.0000 100 rplN 1.0000 100 rpsQ 1.0000 100 cds-QMW92566.1 1.0000 100 rplP 1.0000 100 rpsC 1.0000 100 cds-QMW92569.1 1.0000 100 rpsS 1.0000 100 rplB 1.0000 100 cds-QMW92572.1 1.0000 100 rplD 1.0000 100 cds-QMW92574.1 1.0000 100 rpsJ 1.0000 100 tuf 1.0000 100 fusA_2 1.0000 100 rpsG 1.0000 100 cds-QMW92579.1 1.0000 100 rpoC 1.0000 100 rpoB 1.0000 100 cds-QMW92582.1 1.0000 100 cds-QMW92583.1 1.0000 100 cds-QMW92584.1 1.0000 100 rplK 1.0000 100 nusG 1.0000 100 rpmG 1.0000 100 tuf_2 1.0000 100 sigH 1.0000 100 cds-QMW92606.1 1.0000 100 cds-QMW92611.1 1.0000 100 greA 1.0000 100 cds-QMW92624.1 1.0000 100 cds-QMW92631.1 1.0000 100 mfd 1.0000 100 cds-QMW92660.1 1.0000 100 cds-QMW92680.1 1.0000 100 cds-QMW92681.1 1.0000 100 cds-QMW92719.1 1.0000 100 cds-QMW92728.1 1.0000 100 cds-QMW92738.1 1.0000 100 cds-QMW92813.1 1.0000 100 cds-QMW92835.1 1.0000 100 cds-QMW92841.1 1.0000 100 cds-QMW92868.1 1.0000 100 cds-QMW92894.1 1.0000 100 cds-QMW92909.1 1.0000 100 cds-QMW92929.1 1.0000 100 cds-QMW92933.1 1.0000 100 cds-QMW92939.1 1.0000 100 cds-QMW92941.1 1.0000 100 cds-QMW92954.1 1.0000 100 cds-QMW92955.1 1.0000 100 cds-QMW92957.1 1.0000 100 cds-FF104_18755 1.0000 100 cds-QMW92978.1 1.0000 100 cds-QMW92991.1 1.0000 100 cds-QMW92997.1 1.0000 100 cds-QMW93004.1 1.0000 100 cds-QMW93007.1 1.0000 100 cds-QMW93012.1 1.0000 100 cds-QMW93015.1 1.0000 100 treR 1.0000 100 cds-QMW93050.1 1.0000 100 cds-QMW93076.1 1.0000 100 cds-QMW93081.1 1.0000 100 cds-QMW93093.1 1.0000 100 cds-QMW93105.1 1.0000 100 cds-QMW93117.1 1.0000 100 cds-QMW93122.1 1.0000 100 greA_2 1.0000 100 cds-QMW93146.1 1.0000 100 cds-QMW93153.1 1.0000 100 cds-QMW93155.1 1.0000 100 cds-QMW93164.1 1.0000 100 cds-QMW93169.1 1.0000 100 cds-QMW93171.1 1.0000 100 cds-QMW93214.1 1.0000 100 cds-QMW93217.1 1.0000 100 cds-QMW93223.1 1.0000 100 cds-QMW93231.1 1.0000 100 cds-QMW93259.1 1.0000 100 cds-QMW93260.1 1.0000 100 cds-QMW93266.1 1.0000 100 cds-QMW93280.1 1.0000 100 cds-QMW93307.1 1.0000 100 cds-QMW93342.1 1.0000 100 polC 1.0000 100 cds-QMW93351.1 1.0000 100 cds-QMW93361.1 1.0000 100 cds-QMW93376.1 1.0000 100 cds-FF104_21040 1.0000 100 cds-QMW93441.1 1.0000 100 cds-QMW93398.1 1.0000 100 cds-QMW93414.1 1.0000 100 cds-QMW93449.1 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme HK.fasta -dna -nmotifs 3 -minw 6 -maxw 50 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 50 nsites: minsites= 2 maxsites= 337 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 33700 N= 337 sample: seed= 0 hsfrac= 0 searchsize= 33700 norand= no csites= 1000 Letter frequencies in dataset: A 0.36 C 0.135 G 0.129 T 0.376 Background letter frequencies (from file dataset with add-one prior applied): A 0.36 C 0.135 G 0.129 T 0.376 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WWWHWTTCCTCCHYW MEME-1 width = 15 sites = 155 llr = 1245 E-value = 2.3e-097 ******************************************************************************** -------------------------------------------------------------------------------- Motif WWWHWTTCCTCCHYW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4343422::1:1424 pos.-specific C 11121119a198241 probability G ::1::1:::::1::1 matrix T 55445671:911345 bits 3.0 2.7 * * 2.4 ** * 2.1 ** * Relative 1.8 ** ** Entropy 1.5 ** ** (11.6 bits) 1.2 ** ** 0.9 ***** 0.6 ***** 0.3 * ******* * 0.0 --------------- Multilevel TTTTTTTCCTCCATT consensus AAAAAA TCA sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWHWTTCCTCCHYW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- rpmB 80 2.39e-07 AATAGAAACA TTATATTCCTCCACA AAAGAT rpsC 80 7.72e-07 CTCGAATCAA ATATCTTCCTCCCTT TGCGTT cds-QMW92269.1 80 7.72e-07 TATTGAAATT ATTTTCTCCTCCACA TCAGTG rpsJ 81 9.97e-07 ATTTTGCATG TATTTTTCCTCCCTT TACTT rplB 79 9.97e-07 GTCTCTTCGA ATTTCTTCCTCCCTT AAAATGT rplE 81 9.97e-07 GTAAGATTAA AAACTTTCCTCCATT GATTA cds-QMW92789.1 80 1.27e-06 ATTCTTGTAT ATAAATTCCTCCCTT ACCTAC cds-QMW92561.1 82 1.62e-06 TAAGCGAGTT ATTAATTCCTCCCTT GTGT rpsK 82 1.62e-06 TATTCTTCTT TATCATTCCTCCATT CTAT cds-QMW92572.1 79 2.03e-06 CGACATAGTT TTTAACTCCTCCACA TGCGTAT rplP 81 2.03e-06 CCGATTGCGT ATCCTTTCCTCCTTA TTCAG atpD 81 2.51e-06 TTCGAGTTTT TATCATTCCTCCATA TAGAA rpsG 81 3.09e-06 ATTTAAGTTT TACAATTCCTCCCTT CTTTT rplD 81 3.09e-06 GAATTAATCA CTTCTTTCCTCCTTT AATCT rpsQ 80 3.09e-06 TTGTTATTCT AAACCTTCCTCCATA AAGGAT cds-QMW92563.1 81 3.09e-06 GGTCTTCAAG ATATTCTCCTCCACC GATTG cds-QMW92384.1 82 3.09e-06 CTATTTTGAT TTTATTTCCTCCATA TTTT cds-QMW91419.1 80 3.09e-06 TTTATTGTAA ATTTTCCCCTCCTCT TAATTT cds-QMW92544.1 82 3.77e-06 TCAATTCACT TCTCATTCCTCCATT TAGG cds-QMW89856.1 78 3.77e-06 TAGATTTAGT TACTTTTCCTCCATA ACCATGGT cds-QMW90950.1 82 4.55e-06 ATATATTAGT ATAATACCCTCCACT TTTT cds-QMW92579.1 82 5.45e-06 ATCTATTTAT TTAAAGTCCTCCACT TTTT rplU 80 5.45e-06 ACCGCTCTGG CAATACTCCTCCACA AAAAAT rpmJ 82 6.50e-06 GGTGTTTTCA TTATACTCCTCCCAA TCGA cds-QMW92545.1 81 6.50e-06 ACGGTAAATA TTATATCCCTCCCAA ACAGT cds-QMW91223.1 82 6.50e-06 TTGCAATAGT TTCTTTACCTCCTCA TTTT cds-QMW92631.1 77 7.67e-06 ATATAAAAAT TTAAATTCCTCCTTA GAAAATTTG cds-QMW92496.1 84 7.67e-06 TCAAATAACC AAATAATCCTCCTCT TT cds-QMW91064.1 82 7.67e-06 ATGTTATTCT TATTTATCCTCCCTA AGTA cds-QMW91157.1 81 8.97e-06 ATCTATACTT AATTTCTCCTCCCAT TGTTT cds-QMW92574.1 80 1.05e-05 TAGGCGATTA ATCAAACCCTCCACA TTTATG rpsS 81 1.05e-05 TGAAGCATAA ATACTTCCCTCCGTA TAAAT cds-QMW92738.1 82 1.21e-05 ATGGACACAT ATTTATTCCTCCTTG AATT tuf_2 81 1.21e-05 AAATAATGTT CTAATTTCCTCCTTA AAAGT cds-QMW92555.1 80 1.21e-05 TCTTCATATT ATTTGTTCCTCCACG TGATCT cds-QMW91118.1 80 1.21e-05 CTATTTAATA TTAAATACCTCCTCA TTCTAA cds-QMW92559.1 82 1.39e-05 GTTAAAATTT ATTATGTCCTCCACG TTAA infA 77 1.39e-05 CAATCTCCGT AACAATTCCTCCCAA CTAATGGAA cds-QMW92448.1 81 1.39e-05 ATTCCAAAAT AATATATCCTCCTCA TCCTT cds-QMW91150.1 81 1.39e-05 TACTTTCAAA TAACAGTCCCCCCCT TTTGT rplN 81 1.59e-05 ATTCGCATTT CGACTTTCCTCCCAT TGAAT rpmD 80 1.59e-05 CTTCTTTATA ATCCAATCCTCCAAA ACGTCT cds-QMW92052.1 81 1.59e-05 TTAAATTCGA TCGCCTCCCTCCCTA TAATT rpoD 79 1.59e-05 TTTTCCAATA TTGCCTTCCTCCGTT AAAATAA cds-QMW90291.1 79 1.59e-05 AATACATATG TATTTTACCTCCATT TTGAAAT cds-QMW89506.1 78 1.59e-05 ATAACCATTA ATAATATCCTCCCAA TTTAAGCT cds-QMW92611.1 25 1.82e-05 GACATGTTTA TTTACATCCTCCTCG ATGACAAAAA cds-QMW92179.1 81 2.06e-05 AATATCACCC ATTATAACCTCCACA AACAT rpsH 80 2.33e-05 TGTTGTTACA TTGCTTTCCTCCGTG TAAATT rpsM 78 2.33e-05 TGTGTAAAGT TAGTAGTCCTCCACA TTTAAAGT atpE 82 2.33e-05 TTTTAATTAA TAAAACTCCTCCTTA ACAT hrcA 82 2.33e-05 TTACTCACGA TTATTTTTCTCCACT CTGA cds-QMW92583.1 77 2.62e-05 TACTAAATTT TGATACTCCTCCACC TGGCATCAT cds-QMW92557.1 82 2.62e-05 TTTTAAGATT AATTGCTCCTCCCTT TATT cds-QMW92515.1 82 2.62e-05 ACATTTGATT TTTCATTTCTCCACA TTTA cds-QMW92486.1 80 2.62e-05 TAAAATATAA ACCCCTACCTCCATT TGTAAT efp 81 2.95e-05 TTAATAAAAT ATTTAAACCTCCCTA TAAAA nusG 58 3.30e-05 ATTTTAACTT CATTTTCCCTCCAAA CCACTAAACA rplK 80 3.30e-05 ATAAATGGTG TCATTATCCTCCTTA TTGTTT rpsD_2 80 3.30e-05 GATCAGATTG GCATTATCCTCCACA TTAAAT atpC 80 3.30e-05 GATTTTGAAA TTTCATTCCTCTACA ATCTCA cds-QMW91977.1 81 3.30e-05 ACAATTGATT TATTTAACCTCCCTA AACGT cds-QMW89836.1 82 3.30e-05 GACCAGTTAT ATTTAATCCTCCTAT TAAT rpmG 82 3.68e-05 AATTATATAT ATTTTGACCTCCACG TCAG cds-QMW91708.1 80 3.68e-05 TTAAATTGTT CTCTCATCCTCCTTA AATTTT cds-QMW91201.1 81 3.68e-05 ATATGTGTGA ATCTATGCCTCCACA TGTTA cds-QMW92312.1 84 4.10e-05 TTTATCTCCT ATTTTACCCTCCGTT AA cds-QMW92790.1 81 4.10e-05 TTTACTCTTA ACTTAACCCTCCATT AATAC cds-QMW91946.1 81 4.10e-05 ACATATAAAA TATCTTTCCCCCTAT TAAAT cds-QMW91809.1 82 4.10e-05 CTGATATATT TTAAACACCTCCTTT ACGT rplM 82 4.57e-05 ATAATTACAT TCAAGTCCCTCCCTT TGTC cds-QMW89440.1 45 4.57e-05 GTGTATACGA ATTCTTCCCCCCGTT TCGTATAATT cds-QMW92681.1 82 5.07e-05 TTGATCTTTC AAAGTTTCCTCCTTA TTCC fusA_2 80 5.07e-05 AATAAATGAG TGACTCTCCTCCTTC TTATAT cds-QMW92080.1 81 5.07e-05 TACTACAAAA TTACTTTCCTCGAAA TTCAA nusB 84 5.07e-05 TATACTGTAA ATAAAATCCTCCTAA GC cds-QMW91080.1 82 5.07e-05 AATTTATACG TTATTTTCCTTCACT CTAT cds-QMW90534.1 81 5.07e-05 TGCATTATTA TTTTCTTCCTCGATT CAATG cds-QMW90184.1 81 5.07e-05 ATTAATTTTC TTATATTCCTCGCAT AATGT cds-QMW92353.1 82 5.63e-05 AGCTCGGATA TCTAAAACCTCCACA TTCA cds-QMW90307.1 82 5.63e-05 ATCTTATGTA TTATTATTCTCCACT ATAT greA 45 6.25e-05 TTACGAGAAA ATTTTATCCTCGTCT ATAATTTATT rpoC 81 6.25e-05 CTTGTGATTA AAACTTCCCTCCTGA ATGGG tuf 81 6.25e-05 TTTAAATACA GATATTCCCTCCTTT AAGTT cds-QMW92569.1 81 6.94e-05 TTCTCTATCG GACCTTTCCTCCTAG TAATT cds-QMW92339.1 81 6.94e-05 TTTTTATTTA TTCCTTTCCTTCACG AATTT cds-QMW92225.1 14 6.94e-05 CTTATGCAAA TTGTTTTCCACCTCA ACATAAACTT cds-QMW91904.1 83 6.94e-05 AATTGACATT CAATTTTCCTCGCTA TTT cds-QMW91793.1 85 6.94e-05 GAATAAAAAA CTTTCTTCCACCCTT G cds-QMW89801.1 81 6.94e-05 ATATATTAAT ATTCTTTCGTCCACA AATTT cds-QMW92334.1 81 7.69e-05 GACAGTTAAT TTAAGGTCCTCCACC TTATG cds-QMW92719.1 81 8.53e-05 AATCTCGTAT ATCTTTTTCTCCGCT ATTTA cds-QMW92337.1 77 8.53e-05 AATATAACTG AGGCTTCCCTCCTAT ATCCATTTT cds-QMW92335.1 82 8.53e-05 TTACGAATCT TTCTTTATCTCCACT TAGG cds-QMW92264.1 82 8.53e-05 TTCTACTTAA TGTCATTTCTCCACT TTTT cds-QMW91447.1 82 8.53e-05 TATATAGTTT TTCTTCATCTCCCCT ATTA cds-QMW91349.1 83 8.53e-05 CGAATTATAC ATATAAACCTCCATC TCA cds-QMW91290.1 82 8.53e-05 TGTAATTCTT TTACATTCCTCACAA TTTT cds-QMW92624.1 81 9.46e-05 ATTAAATTGA TATAATTCCACCACG AAAAT rpsI 82 9.46e-05 AATTATATAT GAGCCCTCCTCCTTA TTTT cds-QMW92436.1 81 9.46e-05 CACGAGTATA CAAGTATCCTCCATT CTTAA cds-QMW91910.1 83 9.46e-05 CGATTGAAAT GAAATTACCTCCATA TAA cds-QMW91897.1 82 9.46e-05 AAACTTTAAA TTATATATCTCCACT TGTA cds-QMW91717.1 82 1.05e-04 AAAAAAATCT AAATTGTCCACCACT ACTA cds-QMW90108.1 84 1.05e-04 CTATTTTGAT AAATTTTCCTCGAAT CA cds-QMW92056.1 79 1.16e-04 GACAGTTAAC TTATTCTCCTTCCTT CTTCTTG cds-QMW91175.1 85 1.16e-04 CTTGTAGTAA CAAACCACCTCCTTT A cds-QMW91035.1 81 1.16e-04 TTATTGTATT ACTATTTCCTCAACT TTTTC cds-QMW92558.1 81 1.29e-04 CATTCTTTAT TATCCTTCCTCACTG AGATA cds-QMW92169.1 81 1.29e-04 AATATTAGTC AAAATTTCCTCATCA AAATT cds-QMW91623.1 83 1.29e-04 ACTAAATATA TAACTTCCCTCACAT CTA cds-QMW91196.1 82 1.29e-04 ATACATTCAC TTTTATACCTCAACT CTAA cds-QMW92680.1 84 1.43e-04 ATAAAACAAA AAACATTCCTCTTTT TA cds-QMW92582.1 79 1.43e-04 TAAAATCTTT TTAAAAGCCTCCACG ATAATTT cds-QMW91250.1 81 1.43e-04 ATAAAAACGA TCCTTCTTCTCCCTT CATTT cds-QMW92584.1 56 1.59e-04 AAAGCATTTT TATTCACCCTCCAGT TTTGGCAATG rpsA 80 1.59e-04 TTCTCATAAT ATAAATCCCTCACTA TAATTA cds-QMW92418.1 82 1.75e-04 ATATTCTTAT TTCATATCCACCATA TTTA rpmE 23 1.94e-04 TTTATTGACG CTCTAATCCCCCTAT GATATAATCA cds-QMW92346.1 81 1.94e-04 TGATATCAAA TTATCTTCCTTCCAT TTTAT cds-QMW91278.1 82 1.94e-04 AAATAATAAT ATAGTCTCCTCACCA CTAT cds-QMW91179.1 78 1.94e-04 TCTCCAGTTC GTATAAACCTCCTTA AAATAATA cds-QMW91117.1 81 1.94e-04 ATTATTTATC TTTATTTCCTCTAAT ATTCT cds-QMW92835.1 73 2.15e-04 GTATCGCGGA TTTACTTCGTCCCTT GTTTGGGGGG cds-QMW92457.1 33 2.15e-04 AACTATTAAT TACTATTCCTCTTTT AAGCATCAAA sigI 83 2.37e-04 TTATTACTGG CTCCTTCCCTCGCGT CCA cds-QMW90031.1 82 2.37e-04 TATTTAGTTT TAATTTCCCGCCATT AGAA cds-QMW92566.1 80 2.61e-04 CTCTAAAACT CCTTTACCCACCACT TTCTAT cds-QMW91214.1 82 2.61e-04 TCTCCTTTAA ATTATACCCTCACTT TACA cds-QMW91181.1 23 2.87e-04 AACTATCTTA TATAATTCCTCTCAA TTTAATTTCA cds-QMW92728.1 81 3.16e-04 GTATCATATT AATTTAACCTCACCA CGTTA rfbF 81 3.16e-04 ATATAATATT AATACTATCTCCACA TACTT cds-QMW91947.1 79 3.16e-04 GTGTATTTAT AATATAACCACCACT CATTTAA cds-FF104_09470 21 3.16e-04 TTCGAAACAT AAGTATTCCTTCTCT ATCTTTCTCT cds-QMW91116.1 81 3.16e-04 TTTCAAAATA ATTATTTCCTCTTAT ATCTT cds-QMW92149.1 82 3.80e-04 CATTATTCAT AAAAATACCCCCTAA TCAA sigF 34 3.80e-04 CCCATCTCTC ACTTTTTCCCCGACC GTGTTCCCAT cds-QMW89835.1 83 3.80e-04 GGATTTAAAT AAAACTTTCTCCAAA AAA cds-QMW91265.1 79 4.15e-04 GAAAATATAC TTTAATTCCCTCACA CCATCTA cds-QMW91120.1 81 4.15e-04 ATTGCTAAAA AAATTTTCCTCTTTC ATTCT cds-QMW90483.1 1 4.15e-04 . AATTATTTCTCCTAA ACAATGGAGA cds-QMW92014.1 26 4.53e-04 AGTTCAGTAT ATTCACTTCCCCTTT AATTCTTTAA cds-QMW92551.1 81 4.93e-04 ATATGATTCC ATTAGTATCTCCACT TTTTA cds-QMW91231.1 84 4.93e-04 CATTAGCCAA TTGATTTCCTCTTAT AT cds-QMW89795.1 83 4.93e-04 TTAGATAATA AATCAATCCTCTAAA TCT cds-QMW91517.1 23 5.36e-04 TATAAATTAA TTATACCCCTTCATG ATACATATAA cds-QMW91152.1 24 5.36e-04 CTATGCGGTC TGCTATACCCCCGTT GACAATAGTC cds-QMW93259.1 3 5.82e-04 TA CTAATTACCTTCACG TATAGAAAGT cds-QMW92030.1 83 5.82e-04 TATTTTAATA TTGATATCCTCTTTT TAT cds-QMW91936.1 82 5.82e-04 TTTTAAATCG TTATTAACCCCCTAC ATAA cds-QMW91073.1 85 6.30e-04 TTCTTTTTAT ATACACTCCACTCTT A rpoB 80 6.82e-04 AATCAAATAA AATATGTTCCCCACT TTTAAG cds-QMW92390.1 78 6.82e-04 TTTATATAAT TTCTTAACCTCGCAC TGGTATGG sigH 76 7.36e-04 GTCAAATTAA AATCTTCTCTCAACT CTCTAATATC cds-QMW93307.1 74 8.55e-04 GTATAAAATC CATGTTTTCTCCTTT CAATCATTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWHWTTCCTCCHYW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- rpmB 2.4e-07 79_[+1]_6 rpsC 7.7e-07 79_[+1]_6 cds-QMW92269.1 7.7e-07 79_[+1]_6 rpsJ 1e-06 80_[+1]_5 rplB 1e-06 78_[+1]_7 rplE 1e-06 80_[+1]_5 cds-QMW92789.1 1.3e-06 79_[+1]_6 cds-QMW92561.1 1.6e-06 81_[+1]_4 rpsK 1.6e-06 81_[+1]_4 cds-QMW92572.1 2e-06 78_[+1]_7 rplP 2e-06 80_[+1]_5 atpD 2.5e-06 80_[+1]_5 rpsG 3.1e-06 80_[+1]_5 rplD 3.1e-06 80_[+1]_5 rpsQ 3.1e-06 79_[+1]_6 cds-QMW92563.1 3.1e-06 80_[+1]_5 cds-QMW92384.1 3.1e-06 81_[+1]_4 cds-QMW91419.1 3.1e-06 79_[+1]_6 cds-QMW92544.1 3.8e-06 81_[+1]_4 cds-QMW89856.1 3.8e-06 77_[+1]_8 cds-QMW90950.1 4.6e-06 81_[+1]_4 cds-QMW92579.1 5.4e-06 81_[+1]_4 rplU 5.4e-06 79_[+1]_6 rpmJ 6.5e-06 81_[+1]_4 cds-QMW92545.1 6.5e-06 80_[+1]_5 cds-QMW91223.1 6.5e-06 81_[+1]_4 cds-QMW92631.1 7.7e-06 76_[+1]_9 cds-QMW92496.1 7.7e-06 83_[+1]_2 cds-QMW91064.1 7.7e-06 81_[+1]_4 cds-QMW91157.1 9e-06 80_[+1]_5 cds-QMW92574.1 1e-05 79_[+1]_6 rpsS 1e-05 80_[+1]_5 cds-QMW92738.1 1.2e-05 81_[+1]_4 tuf_2 1.2e-05 80_[+1]_5 cds-QMW92555.1 1.2e-05 79_[+1]_6 cds-QMW91118.1 1.2e-05 79_[+1]_6 cds-QMW92559.1 1.4e-05 81_[+1]_4 infA 1.4e-05 76_[+1]_9 cds-QMW92448.1 1.4e-05 80_[+1]_5 cds-QMW91150.1 1.4e-05 80_[+1]_5 rplN 1.6e-05 80_[+1]_5 rpmD 1.6e-05 79_[+1]_6 cds-QMW92052.1 1.6e-05 80_[+1]_5 rpoD 1.6e-05 78_[+1]_7 cds-QMW90291.1 1.6e-05 78_[+1]_7 cds-QMW89506.1 1.6e-05 77_[+1]_8 cds-QMW92611.1 1.8e-05 24_[+1]_61 cds-QMW92179.1 2.1e-05 80_[+1]_5 rpsH 2.3e-05 79_[+1]_6 rpsM 2.3e-05 77_[+1]_8 atpE 2.3e-05 81_[+1]_4 hrcA 2.3e-05 81_[+1]_4 cds-QMW92583.1 2.6e-05 76_[+1]_9 cds-QMW92557.1 2.6e-05 81_[+1]_4 cds-QMW92515.1 2.6e-05 81_[+1]_4 cds-QMW92486.1 2.6e-05 79_[+1]_6 efp 2.9e-05 80_[+1]_5 nusG 3.3e-05 57_[+1]_28 rplK 3.3e-05 79_[+1]_6 rpsD_2 3.3e-05 79_[+1]_6 atpC 3.3e-05 79_[+1]_6 cds-QMW91977.1 3.3e-05 80_[+1]_5 cds-QMW89836.1 3.3e-05 81_[+1]_4 rpmG 3.7e-05 81_[+1]_4 cds-QMW91708.1 3.7e-05 79_[+1]_6 cds-QMW91201.1 3.7e-05 80_[+1]_5 cds-QMW92312.1 4.1e-05 83_[+1]_2 cds-QMW92790.1 4.1e-05 80_[+1]_5 cds-QMW91946.1 4.1e-05 80_[+1]_5 cds-QMW91809.1 4.1e-05 81_[+1]_4 rplM 4.6e-05 81_[+1]_4 cds-QMW89440.1 4.6e-05 44_[+1]_41 cds-QMW92681.1 5.1e-05 81_[+1]_4 fusA_2 5.1e-05 79_[+1]_6 cds-QMW92080.1 5.1e-05 80_[+1]_5 nusB 5.1e-05 83_[+1]_2 cds-QMW91080.1 5.1e-05 81_[+1]_4 cds-QMW90534.1 5.1e-05 80_[+1]_5 cds-QMW90184.1 5.1e-05 80_[+1]_5 cds-QMW92353.1 5.6e-05 81_[+1]_4 cds-QMW90307.1 5.6e-05 81_[+1]_4 greA 6.3e-05 44_[+1]_41 rpoC 6.3e-05 80_[+1]_5 tuf 6.3e-05 80_[+1]_5 cds-QMW92569.1 6.9e-05 80_[+1]_5 cds-QMW92339.1 6.9e-05 80_[+1]_5 cds-QMW92225.1 6.9e-05 13_[+1]_72 cds-QMW91904.1 6.9e-05 82_[+1]_3 cds-QMW91793.1 6.9e-05 84_[+1]_1 cds-QMW89801.1 6.9e-05 80_[+1]_5 cds-QMW92334.1 7.7e-05 80_[+1]_5 cds-QMW92719.1 8.5e-05 80_[+1]_5 cds-QMW92337.1 8.5e-05 76_[+1]_9 cds-QMW92335.1 8.5e-05 81_[+1]_4 cds-QMW92264.1 8.5e-05 81_[+1]_4 cds-QMW91447.1 8.5e-05 81_[+1]_4 cds-QMW91349.1 8.5e-05 82_[+1]_3 cds-QMW91290.1 8.5e-05 81_[+1]_4 cds-QMW92624.1 9.5e-05 80_[+1]_5 rpsI 9.5e-05 81_[+1]_4 cds-QMW92436.1 9.5e-05 80_[+1]_5 cds-QMW91910.1 9.5e-05 82_[+1]_3 cds-QMW91897.1 9.5e-05 81_[+1]_4 cds-QMW91717.1 0.0001 81_[+1]_4 cds-QMW90108.1 0.0001 83_[+1]_2 cds-QMW92056.1 0.00012 78_[+1]_7 cds-QMW91175.1 0.00012 84_[+1]_1 cds-QMW91035.1 0.00012 80_[+1]_5 cds-QMW92558.1 0.00013 80_[+1]_5 cds-QMW92169.1 0.00013 80_[+1]_5 cds-QMW91623.1 0.00013 82_[+1]_3 cds-QMW91196.1 0.00013 81_[+1]_4 cds-QMW92680.1 0.00014 83_[+1]_2 cds-QMW92582.1 0.00014 78_[+1]_7 cds-QMW91250.1 0.00014 80_[+1]_5 cds-QMW92584.1 0.00016 55_[+1]_30 rpsA 0.00016 79_[+1]_6 cds-QMW92418.1 0.00018 81_[+1]_4 rpmE 0.00019 22_[+1]_63 cds-QMW92346.1 0.00019 80_[+1]_5 cds-QMW91278.1 0.00019 81_[+1]_4 cds-QMW91179.1 0.00019 77_[+1]_8 cds-QMW91117.1 0.00019 80_[+1]_5 cds-QMW92835.1 0.00021 72_[+1]_13 cds-QMW92457.1 0.00021 32_[+1]_53 sigI 0.00024 82_[+1]_3 cds-QMW90031.1 0.00024 81_[+1]_4 cds-QMW92566.1 0.00026 79_[+1]_6 cds-QMW91214.1 0.00026 81_[+1]_4 cds-QMW91181.1 0.00029 22_[+1]_63 cds-QMW92728.1 0.00032 80_[+1]_5 rfbF 0.00032 80_[+1]_5 cds-QMW91947.1 0.00032 78_[+1]_7 cds-FF104_09470 0.00032 20_[+1]_65 cds-QMW91116.1 0.00032 80_[+1]_5 cds-QMW92149.1 0.00038 81_[+1]_4 sigF 0.00038 33_[+1]_52 cds-QMW89835.1 0.00038 82_[+1]_3 cds-QMW91265.1 0.00041 78_[+1]_7 cds-QMW91120.1 0.00041 80_[+1]_5 cds-QMW90483.1 0.00041 [+1]_85 cds-QMW92014.1 0.00045 25_[+1]_60 cds-QMW92551.1 0.00049 80_[+1]_5 cds-QMW91231.1 0.00049 83_[+1]_2 cds-QMW89795.1 0.00049 82_[+1]_3 cds-QMW91517.1 0.00054 22_[+1]_63 cds-QMW91152.1 0.00054 23_[+1]_62 cds-QMW93259.1 0.00058 2_[+1]_83 cds-QMW92030.1 0.00058 82_[+1]_3 cds-QMW91936.1 0.00058 81_[+1]_4 cds-QMW91073.1 0.00063 84_[+1]_1 rpoB 0.00068 79_[+1]_6 cds-QMW92390.1 0.00068 77_[+1]_8 sigH 0.00074 75_[+1]_10 cds-QMW93307.1 0.00085 73_[+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWHWTTCCTCCHYW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WWWHWTTCCTCCHYW width=15 seqs=155 rpmB ( 80) TTATATTCCTCCACA 1 rpsC ( 80) ATATCTTCCTCCCTT 1 cds-QMW92269.1 ( 80) ATTTTCTCCTCCACA 1 rpsJ ( 81) TATTTTTCCTCCCTT 1 rplB ( 79) ATTTCTTCCTCCCTT 1 rplE ( 81) AAACTTTCCTCCATT 1 cds-QMW92789.1 ( 80) ATAAATTCCTCCCTT 1 cds-QMW92561.1 ( 82) ATTAATTCCTCCCTT 1 rpsK ( 82) TATCATTCCTCCATT 1 cds-QMW92572.1 ( 79) TTTAACTCCTCCACA 1 rplP ( 81) ATCCTTTCCTCCTTA 1 atpD ( 81) TATCATTCCTCCATA 1 rpsG ( 81) TACAATTCCTCCCTT 1 rplD ( 81) CTTCTTTCCTCCTTT 1 rpsQ ( 80) AAACCTTCCTCCATA 1 cds-QMW92563.1 ( 81) ATATTCTCCTCCACC 1 cds-QMW92384.1 ( 82) TTTATTTCCTCCATA 1 cds-QMW91419.1 ( 80) ATTTTCCCCTCCTCT 1 cds-QMW92544.1 ( 82) TCTCATTCCTCCATT 1 cds-QMW89856.1 ( 78) TACTTTTCCTCCATA 1 cds-QMW90950.1 ( 82) ATAATACCCTCCACT 1 cds-QMW92579.1 ( 82) TTAAAGTCCTCCACT 1 rplU ( 80) CAATACTCCTCCACA 1 rpmJ ( 82) TTATACTCCTCCCAA 1 cds-QMW92545.1 ( 81) TTATATCCCTCCCAA 1 cds-QMW91223.1 ( 82) TTCTTTACCTCCTCA 1 cds-QMW92631.1 ( 77) TTAAATTCCTCCTTA 1 cds-QMW92496.1 ( 84) AAATAATCCTCCTCT 1 cds-QMW91064.1 ( 82) TATTTATCCTCCCTA 1 cds-QMW91157.1 ( 81) AATTTCTCCTCCCAT 1 cds-QMW92574.1 ( 80) ATCAAACCCTCCACA 1 rpsS ( 81) ATACTTCCCTCCGTA 1 cds-QMW92738.1 ( 82) ATTTATTCCTCCTTG 1 tuf_2 ( 81) CTAATTTCCTCCTTA 1 cds-QMW92555.1 ( 80) ATTTGTTCCTCCACG 1 cds-QMW91118.1 ( 80) TTAAATACCTCCTCA 1 cds-QMW92559.1 ( 82) ATTATGTCCTCCACG 1 infA ( 77) AACAATTCCTCCCAA 1 cds-QMW92448.1 ( 81) AATATATCCTCCTCA 1 cds-QMW91150.1 ( 81) TAACAGTCCCCCCCT 1 rplN ( 81) CGACTTTCCTCCCAT 1 rpmD ( 80) ATCCAATCCTCCAAA 1 cds-QMW92052.1 ( 81) TCGCCTCCCTCCCTA 1 rpoD ( 79) TTGCCTTCCTCCGTT 1 cds-QMW90291.1 ( 79) TATTTTACCTCCATT 1 cds-QMW89506.1 ( 78) ATAATATCCTCCCAA 1 cds-QMW92611.1 ( 25) TTTACATCCTCCTCG 1 cds-QMW92179.1 ( 81) ATTATAACCTCCACA 1 rpsH ( 80) TTGCTTTCCTCCGTG 1 rpsM ( 78) TAGTAGTCCTCCACA 1 atpE ( 82) TAAAACTCCTCCTTA 1 hrcA ( 82) TTATTTTTCTCCACT 1 cds-QMW92583.1 ( 77) TGATACTCCTCCACC 1 cds-QMW92557.1 ( 82) AATTGCTCCTCCCTT 1 cds-QMW92515.1 ( 82) TTTCATTTCTCCACA 1 cds-QMW92486.1 ( 80) ACCCCTACCTCCATT 1 efp ( 81) ATTTAAACCTCCCTA 1 nusG ( 58) CATTTTCCCTCCAAA 1 rplK ( 80) TCATTATCCTCCTTA 1 rpsD_2 ( 80) GCATTATCCTCCACA 1 atpC ( 80) TTTCATTCCTCTACA 1 cds-QMW91977.1 ( 81) TATTTAACCTCCCTA 1 cds-QMW89836.1 ( 82) ATTTAATCCTCCTAT 1 rpmG ( 82) ATTTTGACCTCCACG 1 cds-QMW91708.1 ( 80) CTCTCATCCTCCTTA 1 cds-QMW91201.1 ( 81) ATCTATGCCTCCACA 1 cds-QMW92312.1 ( 84) ATTTTACCCTCCGTT 1 cds-QMW92790.1 ( 81) ACTTAACCCTCCATT 1 cds-QMW91946.1 ( 81) TATCTTTCCCCCTAT 1 cds-QMW91809.1 ( 82) TTAAACACCTCCTTT 1 rplM ( 82) TCAAGTCCCTCCCTT 1 cds-QMW89440.1 ( 45) ATTCTTCCCCCCGTT 1 cds-QMW92681.1 ( 82) AAAGTTTCCTCCTTA 1 fusA_2 ( 80) TGACTCTCCTCCTTC 1 cds-QMW92080.1 ( 81) TTACTTTCCTCGAAA 1 nusB ( 84) ATAAAATCCTCCTAA 1 cds-QMW91080.1 ( 82) TTATTTTCCTTCACT 1 cds-QMW90534.1 ( 81) TTTTCTTCCTCGATT 1 cds-QMW90184.1 ( 81) TTATATTCCTCGCAT 1 cds-QMW92353.1 ( 82) TCTAAAACCTCCACA 1 cds-QMW90307.1 ( 82) TTATTATTCTCCACT 1 greA ( 45) ATTTTATCCTCGTCT 1 rpoC ( 81) AAACTTCCCTCCTGA 1 tuf ( 81) GATATTCCCTCCTTT 1 cds-QMW92569.1 ( 81) GACCTTTCCTCCTAG 1 cds-QMW92339.1 ( 81) TTCCTTTCCTTCACG 1 cds-QMW92225.1 ( 14) TTGTTTTCCACCTCA 1 cds-QMW91904.1 ( 83) CAATTTTCCTCGCTA 1 cds-QMW91793.1 ( 85) CTTTCTTCCACCCTT 1 cds-QMW89801.1 ( 81) ATTCTTTCGTCCACA 1 cds-QMW92334.1 ( 81) TTAAGGTCCTCCACC 1 cds-QMW92719.1 ( 81) ATCTTTTTCTCCGCT 1 cds-QMW92337.1 ( 77) AGGCTTCCCTCCTAT 1 cds-QMW92335.1 ( 82) TTCTTTATCTCCACT 1 cds-QMW92264.1 ( 82) TGTCATTTCTCCACT 1 cds-QMW91447.1 ( 82) TTCTTCATCTCCCCT 1 cds-QMW91349.1 ( 83) ATATAAACCTCCATC 1 cds-QMW91290.1 ( 82) TTACATTCCTCACAA 1 cds-QMW92624.1 ( 81) TATAATTCCACCACG 1 rpsI ( 82) GAGCCCTCCTCCTTA 1 cds-QMW92436.1 ( 81) CAAGTATCCTCCATT 1 cds-QMW91910.1 ( 83) GAAATTACCTCCATA 1 cds-QMW91897.1 ( 82) TTATATATCTCCACT 1 cds-QMW91717.1 ( 82) AAATTGTCCACCACT 1 cds-QMW90108.1 ( 84) AAATTTTCCTCGAAT 1 cds-QMW92056.1 ( 79) TTATTCTCCTTCCTT 1 cds-QMW91175.1 ( 85) CAAACCACCTCCTTT 1 cds-QMW91035.1 ( 81) ACTATTTCCTCAACT 1 cds-QMW92558.1 ( 81) TATCCTTCCTCACTG 1 cds-QMW92169.1 ( 81) AAAATTTCCTCATCA 1 cds-QMW91623.1 ( 83) TAACTTCCCTCACAT 1 cds-QMW91196.1 ( 82) TTTTATACCTCAACT 1 cds-QMW92680.1 ( 84) AAACATTCCTCTTTT 1 cds-QMW92582.1 ( 79) TTAAAAGCCTCCACG 1 cds-QMW91250.1 ( 81) TCCTTCTTCTCCCTT 1 cds-QMW92584.1 ( 56) TATTCACCCTCCAGT 1 rpsA ( 80) ATAAATCCCTCACTA 1 cds-QMW92418.1 ( 82) TTCATATCCACCATA 1 rpmE ( 23) CTCTAATCCCCCTAT 1 cds-QMW92346.1 ( 81) TTATCTTCCTTCCAT 1 cds-QMW91278.1 ( 82) ATAGTCTCCTCACCA 1 cds-QMW91179.1 ( 78) GTATAAACCTCCTTA 1 cds-QMW91117.1 ( 81) TTTATTTCCTCTAAT 1 cds-QMW92835.1 ( 73) TTTACTTCGTCCCTT 1 cds-QMW92457.1 ( 33) TACTATTCCTCTTTT 1 sigI ( 83) CTCCTTCCCTCGCGT 1 cds-QMW90031.1 ( 82) TAATTTCCCGCCATT 1 cds-QMW92566.1 ( 80) CCTTTACCCACCACT 1 cds-QMW91214.1 ( 82) ATTATACCCTCACTT 1 cds-QMW91181.1 ( 23) TATAATTCCTCTCAA 1 cds-QMW92728.1 ( 81) AATTTAACCTCACCA 1 rfbF ( 81) AATACTATCTCCACA 1 cds-QMW91947.1 ( 79) AATATAACCACCACT 1 cds-FF104_09470 ( 21) AAGTATTCCTTCTCT 1 cds-QMW91116.1 ( 81) ATTATTTCCTCTTAT 1 cds-QMW92149.1 ( 82) AAAAATACCCCCTAA 1 sigF ( 34) ACTTTTTCCCCGACC 1 cds-QMW89835.1 ( 83) AAAACTTTCTCCAAA 1 cds-QMW91265.1 ( 79) TTTAATTCCCTCACA 1 cds-QMW91120.1 ( 81) AAATTTTCCTCTTTC 1 cds-QMW90483.1 ( 1) AATTATTTCTCCTAA 1 cds-QMW92014.1 ( 26) ATTCACTTCCCCTTT 1 cds-QMW92551.1 ( 81) ATTAGTATCTCCACT 1 cds-QMW91231.1 ( 84) TTGATTTCCTCTTAT 1 cds-QMW89795.1 ( 83) AATCAATCCTCTAAA 1 cds-QMW91517.1 ( 23) TTATACCCCTTCATG 1 cds-QMW91152.1 ( 24) TGCTATACCCCCGTT 1 cds-QMW93259.1 ( 3) CTAATTACCTTCACG 1 cds-QMW92030.1 ( 83) TTGATATCCTCTTTT 1 cds-QMW91936.1 ( 82) TTATTAACCCCCTAC 1 cds-QMW91073.1 ( 85) ATACACTCCACTCTT 1 rpoB ( 80) AATATGTTCCCCACT 1 cds-QMW92390.1 ( 78) TTCTTAACCTCGCAC 1 sigH ( 76) AATCTTCTCTCAACT 1 cds-QMW93307.1 ( 74) CATGTTTTCTCCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWHWTTCCTCCHYW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 28982 bayes= 8.45771 E= 2.3e-097 20 -48 -174 27 -8 -80 -174 53 13 7 -100 9 -25 82 -232 20 -2 -22 -200 40 -63 1 -132 63 -105 14 -332 82 -1392 272 -1392 -178 -1392 287 -332 -1392 -280 -93 -432 121 -1392 281 -1392 -286 -234 257 -115 -240 26 86 -152 -44 -90 145 -274 16 8 -122 -62 35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWHWTTCCTCCHYW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 155 E= 2.3e-097 0.412903 0.096774 0.038710 0.451613 0.341935 0.077419 0.038710 0.541935 0.393548 0.141935 0.064516 0.400000 0.303226 0.238710 0.025806 0.432258 0.354839 0.116129 0.032258 0.496774 0.232258 0.135484 0.051613 0.580645 0.174194 0.148387 0.012903 0.664516 0.000000 0.890323 0.000000 0.109677 0.000000 0.987097 0.012903 0.000000 0.051613 0.070968 0.006452 0.870968 0.000000 0.948387 0.000000 0.051613 0.070968 0.800000 0.058065 0.070968 0.432258 0.245161 0.045161 0.277419 0.193548 0.367742 0.019355 0.419355 0.380645 0.058065 0.083871 0.477419 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWWHWTTCCTCCHYW MEME-1 regular expression -------------------------------------------------------------------------------- [TA][TA][TA][TAC][TA][TA]TCCTCC[ATC][TC][TA] -------------------------------------------------------------------------------- Time 50.03 secs. ******************************************************************************** ******************************************************************************** MOTIF ARGGAGGWGWA MEME-2 width = 11 sites = 97 llr = 770 E-value = 1.0e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARGGAGGWGWA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 752:8123255 pos.-specific C 1::::::::11 probability G 138a19816:2 matrix T 12::1:16232 bits 3.0 2.7 * * 2.4 * * 2.1 * * Relative 1.8 ** * Entropy 1.5 ** ** (11.5 bits) 1.2 ** ** 0.9 ***** * 0.6 ***** * 0.3 ********** 0.0 ----------- Multilevel AAGGAGGTGAA consensus G AATT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGAGGWGWA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- rpsP 84 1.45e-07 TTAACCTTAA AAGGAGGTGAA ATTAAA cds-QMW90732.1 86 2.62e-07 AATATATTAC AGGGAGGAGAA TTTA cds-QMW90436.1 86 5.34e-07 GTTTGATAAT AAGGAGGTGTA ATGA cds-QMW89429.1 86 5.34e-07 AGTCCGAGGG GAGGAGGTGAA ATTG rpsT 84 1.36e-06 ATAAAAATCT AAGGGGGTGAA TTAAGA cds-QMW91905.1 88 2.47e-06 TATTAATATT ATGGAGGTGCA TT cds-QMW89923.1 83 2.47e-06 AATATAGGAT TGGGAGGGGAG TAAAACA cds-QMW89411.1 84 2.47e-06 TAATATATTT AAGGGGGTGCA TGTGTA cds-QMW92929.1 63 4.66e-06 ATGTTTGTGT CGGGAGGAGCA CTTCTTGTTG rpmE 85 8.58e-06 TTATTAACTG AAAGAGGTGAA AAATA dnaE 88 8.58e-06 GTGATTAAGA GAGGAGGAGCT TA cds-QMW89470.1 88 8.58e-06 ATTAAAAGAA TAGGAGGGGTA AA cds-QMW90466.1 87 1.14e-05 ACAAAAGAAA AGAGAGGTGTG CTT rpsO 84 1.32e-05 TAAAAGTTAC ACGGAGGTGCG CTTATA cds-QMW90469.1 84 1.32e-05 GTAGAAGAAT AGAGAGGTGAT TTTTCT rpsR 87 1.32e-05 TTTTTTAGGT GAGGAGGGAAA GAA cds-QMW90613.1 84 1.47e-05 AATTATATTA AGGGAGAGGTA ATTTAT dnaX 84 1.47e-05 TAAGATAAAT AGCGAGGTGAG AGGCCT cds-QMW90886.1 87 1.74e-05 TAAAAAAGAA AAAGAGGTGTA AGT rpsB 73 1.74e-05 GAAAACAATA ATGGAGGTAAA AACCAGGAGG cds-QMW90449.1 85 1.74e-05 AATTATCGTT AAGGAGGGAAT GCACA cds-QMW90650.1 90 2.00e-05 ATTTTGATTT GAGGAGGAAAA infB 56 2.00e-05 TGCAATATAC GAGGAGGAAAA ATATATGGGT sigE 86 2.28e-05 GGAATTTTGT AGGGAGGATAT ATGT cds-QMW93015.1 10 2.55e-05 GGCAAAGAT CGAGAGGTGAA TGTGAGAATA lexA 86 2.55e-05 ATACAAGAAT AGCGAGGTGTA TGCA cds-QMW90710.1 86 2.55e-05 TTTGTGTTAA GGGGAGATGAT AATA cds-QMW89509.1 89 2.55e-05 TAAGTCTTAT ATGGAGGTTAA A cds-QMW93260.1 84 2.83e-05 AAGTGAAATA ATGGAGGTTAG TTTTTT cds-QMW91140.1 86 2.83e-05 TATTAGAAAA AAGGAGATGAC AAAT cds-QMW90878.1 87 2.83e-05 TGTGAAGATG AAAGAGGTGAC AAT codY 88 2.83e-05 ATAAAGTTCT GAGGAGGATAA AT cds-QMW89976.1 87 2.83e-05 CTGATGAAAA TAGGGGGAGAG TTT cds-QMW89590.1 87 2.83e-05 TTATTTTTAG ATGGAGGTACA AAA cds-QMW93105.1 28 3.26e-05 GAATTTAGAC GAGGAGGTTAT ATTTTTGTTA cds-QMW90426.1 11 3.26e-05 AAAATATCAC AAGGAGGTTTT GTTTTACCAT cds-QMW89825.1 88 3.26e-05 ATTTTTATAT ATGGAGGTACG AG fusA 51 3.26e-05 TGTACATGAA AGGCAGGTGAG AGCCAATTTC cds-QMW92868.1 89 3.64e-05 GACAAGATTG AGGGAGTTGCG A cds-QMW90990.1 90 3.64e-05 TTATTTATGT GAGGTGGAGAA sigK 88 3.64e-05 AAGCACTGTT ATGGAGGAAAA AG nusA 85 4.58e-05 GAAATATAAC AAGGAGGGTTT TTAAG cds-QMW89585.1 87 4.58e-05 TATAAATTTA AAGGAAGTGAA AAA cds-QMW92444.1 86 5.06e-05 GATTAGTTTG AAAGAGGTGTC TTTT rplT 86 5.66e-05 GTATTTGGTA CAGGAGGTTTA AGTA cds-QMW93449.1 35 6.28e-05 ATAATTGGCT ATAGAGGAGAA ACATTAGATT cds-QMW93081.1 32 6.28e-05 CAATTAACAA TTGGAGGGGCT AAGGCTAGAG cds-QMW90457.1 86 6.28e-05 TCAATGATTT AAGGAGGATTT AATA nrdR 83 6.28e-05 AGAGAAAAGC AGTGAGGTGAA GAATGAG cds-QMW90352.1 85 6.28e-05 CATTTATATG TGGGAGGGTTA AATTA rpsD 85 7.08e-05 AATCTTTAAT ATGGAGATGAT AAATT cds-QMW93155.1 15 7.85e-05 GAAAAAAATA AGAGAGATGAA TATTGGGATA cds-QMW90411.1 85 7.85e-05 ATTAGATTCA AAGGAGGGCAT TATTC cds-QMW90097.1 88 7.85e-05 ATATGTTAAT AAGGAGAAGTT TT cds-QMW90092.1 87 7.85e-05 TTTATAAGTA ATGGAGAGGTA GAA cds-QMW89659.1 87 7.85e-05 TTATAAAGTA AAGCAGGTGTA AGA cds-QMW93146.1 90 8.57e-05 TATGGTTGTC AGAGAGGAAAA cds-QMW91257.1 87 8.57e-05 GTTAAATGAA TAGGAGATGTA CTC cds-QMW90264.1 87 8.57e-05 TATGAAATTT AAGGAGGACTA TTA cds-QMW89882.1 89 9.68e-05 TGTAGAATCA ATGGAGGTTTT T rpmI 86 1.07e-04 CATAACTTGA GAGGAGGATTT TATC cds-QMW89491.1 87 1.07e-04 TTATATGATT AGGGAGAGATA GAG cds-QMW93214.1 83 1.19e-04 AAGTGTATGA AAGGAGTTGTT ATCTATG cds-QMW91346.1 82 1.32e-04 AATATATTAT CTGGAGGAAAA TTTAAAGT dnaE_2 26 1.32e-04 TAAAGGTCGG TGGGAGAAGAT ATAGTCTATA cds-QMW93414.1 26 1.45e-04 TAAAATCCGC AAGGTGGGTAG TAGAGTTGAT cds-QMW90592.1 87 1.45e-04 TATATCTATA TAAGGGGTGAA CAA cds-QMW90069.1 83 1.45e-04 TGGTCAGACT AAGGGGAGGCT CGTAATT cds-QMW93004.1 56 1.60e-04 CGCGGGAACA AGGGAGATTAC GAGAACGTAA cds-QMW90839.1 86 1.60e-04 TTGTTTATTA GGGGAGATAAT AAAG cds-QMW90535.1 87 1.60e-04 AAAGAATGAA CAGGAAGTGAA CTT cds-QMW90369.1 87 1.60e-04 AGATTAATAT TAAGGGGTGAG ATT cds-QMW90176.1 86 1.60e-04 ATAAAAACAT AGGGAGAAATG CTAT cds-QMW91892.1 86 1.74e-04 AATTTATATA ACGGAGGAATA TATA cds-QMW91179.1 20 1.74e-04 AAGTATTATT ATGGAGGATTT TATACGATAT tenA 87 1.74e-04 TATTTGATGA AAAGAGGTAAC AAG cds-QMW92978.1 90 1.95e-04 GTAGGAAATT TGAGAGGAGCT cds-QMW92894.1 9 1.95e-04 TTTTAGTT TAGGAGGAATT TAAATGTGTA cds-QMW92835.1 57 1.95e-04 TTATAGAAGT AGGGTGGTATC GCGGATTTAC sigG 86 1.95e-04 ATTACTTCCG AAGGGGTTGAT ACTT cds-QMW89955.1 85 1.95e-04 ACATGAATAA AAGGGAGTGCA TATGG cds-QMW89829.1 86 1.95e-04 GAGTTAAATC AGAGAGGATTA TGTT polC 58 2.14e-04 GTAAAAAACG AAAGAGAAGAA GGACGTAAAA cds-QMW92941.1 2 2.14e-04 C CAGGAGTTGTG GTTATTGCTT cds-QMW90823.1 44 2.14e-04 GATGATGCTA AAAGTGGAGAA AATATATCTG cds-QMW90719.1 87 2.14e-04 TAATTATTGA AAGGAGAAATA ACA cds-QMW90483.1 81 2.14e-04 CTTAGTATAT TAGGAAGTGAG GTTATATGA cds-QMW90195.1 85 2.14e-04 TTCTAATGTA AAGGAGTTAAG CAAAC cds-QMW89934.1 30 2.14e-04 GCTGTAGTTG TTGGTGGTGCA ATTACTAGAC cds-QMW89512.1 85 2.14e-04 CTTAAGATAA AAGGTGGAATA TTAAA cds-QMW92955.1 3 2.56e-04 GT AGCGAGATGTA GGTGAGAATC cds-QMW92954.1 43 2.56e-04 ATATTGCACA ATGGGGGAAAC CCTGATGCAG cds-QMW89564.1 88 2.56e-04 GCTTATTTAT AAGGAGTGAAA TG cds-QMW92841.1 26 3.66e-04 TTTATTTGTT GGGGAAGTTAA ATCTTTATGA cds-QMW90056.1 84 4.02e-04 ATATAAGAAA ATTGAGGTGTA AAAATA cds-QMW89844.1 42 4.02e-04 AATTATAGTG AAGAAGGTGAT GTTCTGAAAT cds-QMW91816.1 88 4.36e-04 ATAATTAATG TAGGTGATGAA GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGAGGWGWA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- rpsP 1.5e-07 83_[+2]_6 cds-QMW90732.1 2.6e-07 85_[+2]_4 cds-QMW90436.1 5.3e-07 85_[+2]_4 cds-QMW89429.1 5.3e-07 85_[+2]_4 rpsT 1.4e-06 83_[+2]_6 cds-QMW91905.1 2.5e-06 87_[+2]_2 cds-QMW89923.1 2.5e-06 82_[+2]_7 cds-QMW89411.1 2.5e-06 83_[+2]_6 cds-QMW92929.1 4.7e-06 62_[+2]_27 rpmE 8.6e-06 84_[+2]_5 dnaE 8.6e-06 87_[+2]_2 cds-QMW89470.1 8.6e-06 87_[+2]_2 cds-QMW90466.1 1.1e-05 86_[+2]_3 rpsO 1.3e-05 83_[+2]_6 cds-QMW90469.1 1.3e-05 83_[+2]_6 rpsR 1.3e-05 86_[+2]_3 cds-QMW90613.1 1.5e-05 83_[+2]_6 dnaX 1.5e-05 83_[+2]_6 cds-QMW90886.1 1.7e-05 86_[+2]_3 rpsB 1.7e-05 72_[+2]_17 cds-QMW90449.1 1.7e-05 84_[+2]_5 cds-QMW90650.1 2e-05 89_[+2] infB 2e-05 55_[+2]_34 sigE 2.3e-05 85_[+2]_4 cds-QMW93015.1 2.5e-05 9_[+2]_80 lexA 2.5e-05 85_[+2]_4 cds-QMW90710.1 2.5e-05 85_[+2]_4 cds-QMW89509.1 2.5e-05 88_[+2]_1 cds-QMW93260.1 2.8e-05 83_[+2]_6 cds-QMW91140.1 2.8e-05 85_[+2]_4 cds-QMW90878.1 2.8e-05 86_[+2]_3 codY 2.8e-05 87_[+2]_2 cds-QMW89976.1 2.8e-05 86_[+2]_3 cds-QMW89590.1 2.8e-05 86_[+2]_3 cds-QMW93105.1 3.3e-05 27_[+2]_62 cds-QMW90426.1 3.3e-05 10_[+2]_79 cds-QMW89825.1 3.3e-05 87_[+2]_2 fusA 3.3e-05 50_[+2]_39 cds-QMW92868.1 3.6e-05 88_[+2]_1 cds-QMW90990.1 3.6e-05 89_[+2] sigK 3.6e-05 87_[+2]_2 nusA 4.6e-05 84_[+2]_5 cds-QMW89585.1 4.6e-05 86_[+2]_3 cds-QMW92444.1 5.1e-05 85_[+2]_4 rplT 5.7e-05 85_[+2]_4 cds-QMW93449.1 6.3e-05 34_[+2]_55 cds-QMW93081.1 6.3e-05 31_[+2]_58 cds-QMW90457.1 6.3e-05 85_[+2]_4 nrdR 6.3e-05 82_[+2]_7 cds-QMW90352.1 6.3e-05 84_[+2]_5 rpsD 7.1e-05 84_[+2]_5 cds-QMW93155.1 7.8e-05 14_[+2]_75 cds-QMW90411.1 7.8e-05 84_[+2]_5 cds-QMW90097.1 7.8e-05 87_[+2]_2 cds-QMW90092.1 7.8e-05 86_[+2]_3 cds-QMW89659.1 7.8e-05 86_[+2]_3 cds-QMW93146.1 8.6e-05 89_[+2] cds-QMW91257.1 8.6e-05 86_[+2]_3 cds-QMW90264.1 8.6e-05 86_[+2]_3 cds-QMW89882.1 9.7e-05 88_[+2]_1 rpmI 0.00011 85_[+2]_4 cds-QMW89491.1 0.00011 86_[+2]_3 cds-QMW93214.1 0.00012 82_[+2]_7 cds-QMW91346.1 0.00013 81_[+2]_8 dnaE_2 0.00013 25_[+2]_64 cds-QMW93414.1 0.00014 25_[+2]_64 cds-QMW90592.1 0.00014 86_[+2]_3 cds-QMW90069.1 0.00014 82_[+2]_7 cds-QMW93004.1 0.00016 55_[+2]_34 cds-QMW90839.1 0.00016 85_[+2]_4 cds-QMW90535.1 0.00016 86_[+2]_3 cds-QMW90369.1 0.00016 86_[+2]_3 cds-QMW90176.1 0.00016 85_[+2]_4 cds-QMW91892.1 0.00017 85_[+2]_4 cds-QMW91179.1 0.00017 19_[+2]_70 tenA 0.00017 86_[+2]_3 cds-QMW92978.1 0.00019 89_[+2] cds-QMW92894.1 0.00019 8_[+2]_81 cds-QMW92835.1 0.00019 56_[+2]_33 sigG 0.00019 85_[+2]_4 cds-QMW89955.1 0.00019 84_[+2]_5 cds-QMW89829.1 0.00019 85_[+2]_4 polC 0.00021 57_[+2]_32 cds-QMW92941.1 0.00021 1_[+2]_88 cds-QMW90823.1 0.00021 43_[+2]_46 cds-QMW90719.1 0.00021 86_[+2]_3 cds-QMW90483.1 0.00021 80_[+2]_9 cds-QMW90195.1 0.00021 84_[+2]_5 cds-QMW89934.1 0.00021 29_[+2]_60 cds-QMW89512.1 0.00021 84_[+2]_5 cds-QMW92955.1 0.00026 2_[+2]_87 cds-QMW92954.1 0.00026 42_[+2]_47 cds-QMW89564.1 0.00026 87_[+2]_2 cds-QMW92841.1 0.00037 25_[+2]_64 cds-QMW90056.1 0.0004 83_[+2]_6 cds-QMW89844.1 0.0004 41_[+2]_48 cds-QMW91816.1 0.00044 87_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGAGGWGWA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARGGAGGWGWA width=11 seqs=97 rpsP ( 84) AAGGAGGTGAA 1 cds-QMW90732.1 ( 86) AGGGAGGAGAA 1 cds-QMW90436.1 ( 86) AAGGAGGTGTA 1 cds-QMW89429.1 ( 86) GAGGAGGTGAA 1 rpsT ( 84) AAGGGGGTGAA 1 cds-QMW91905.1 ( 88) ATGGAGGTGCA 1 cds-QMW89923.1 ( 83) TGGGAGGGGAG 1 cds-QMW89411.1 ( 84) AAGGGGGTGCA 1 cds-QMW92929.1 ( 63) CGGGAGGAGCA 1 rpmE ( 85) AAAGAGGTGAA 1 dnaE ( 88) GAGGAGGAGCT 1 cds-QMW89470.1 ( 88) TAGGAGGGGTA 1 cds-QMW90466.1 ( 87) AGAGAGGTGTG 1 rpsO ( 84) ACGGAGGTGCG 1 cds-QMW90469.1 ( 84) AGAGAGGTGAT 1 rpsR ( 87) GAGGAGGGAAA 1 cds-QMW90613.1 ( 84) AGGGAGAGGTA 1 dnaX ( 84) AGCGAGGTGAG 1 cds-QMW90886.1 ( 87) AAAGAGGTGTA 1 rpsB ( 73) ATGGAGGTAAA 1 cds-QMW90449.1 ( 85) AAGGAGGGAAT 1 cds-QMW90650.1 ( 90) GAGGAGGAAAA 1 infB ( 56) GAGGAGGAAAA 1 sigE ( 86) AGGGAGGATAT 1 cds-QMW93015.1 ( 10) CGAGAGGTGAA 1 lexA ( 86) AGCGAGGTGTA 1 cds-QMW90710.1 ( 86) GGGGAGATGAT 1 cds-QMW89509.1 ( 89) ATGGAGGTTAA 1 cds-QMW93260.1 ( 84) ATGGAGGTTAG 1 cds-QMW91140.1 ( 86) AAGGAGATGAC 1 cds-QMW90878.1 ( 87) AAAGAGGTGAC 1 codY ( 88) GAGGAGGATAA 1 cds-QMW89976.1 ( 87) TAGGGGGAGAG 1 cds-QMW89590.1 ( 87) ATGGAGGTACA 1 cds-QMW93105.1 ( 28) GAGGAGGTTAT 1 cds-QMW90426.1 ( 11) AAGGAGGTTTT 1 cds-QMW89825.1 ( 88) ATGGAGGTACG 1 fusA ( 51) AGGCAGGTGAG 1 cds-QMW92868.1 ( 89) AGGGAGTTGCG 1 cds-QMW90990.1 ( 90) GAGGTGGAGAA 1 sigK ( 88) ATGGAGGAAAA 1 nusA ( 85) AAGGAGGGTTT 1 cds-QMW89585.1 ( 87) AAGGAAGTGAA 1 cds-QMW92444.1 ( 86) AAAGAGGTGTC 1 rplT ( 86) CAGGAGGTTTA 1 cds-QMW93449.1 ( 35) ATAGAGGAGAA 1 cds-QMW93081.1 ( 32) TTGGAGGGGCT 1 cds-QMW90457.1 ( 86) AAGGAGGATTT 1 nrdR ( 83) AGTGAGGTGAA 1 cds-QMW90352.1 ( 85) TGGGAGGGTTA 1 rpsD ( 85) ATGGAGATGAT 1 cds-QMW93155.1 ( 15) AGAGAGATGAA 1 cds-QMW90411.1 ( 85) AAGGAGGGCAT 1 cds-QMW90097.1 ( 88) AAGGAGAAGTT 1 cds-QMW90092.1 ( 87) ATGGAGAGGTA 1 cds-QMW89659.1 ( 87) AAGCAGGTGTA 1 cds-QMW93146.1 ( 90) AGAGAGGAAAA 1 cds-QMW91257.1 ( 87) TAGGAGATGTA 1 cds-QMW90264.1 ( 87) AAGGAGGACTA 1 cds-QMW89882.1 ( 89) ATGGAGGTTTT 1 rpmI ( 86) GAGGAGGATTT 1 cds-QMW89491.1 ( 87) AGGGAGAGATA 1 cds-QMW93214.1 ( 83) AAGGAGTTGTT 1 cds-QMW91346.1 ( 82) CTGGAGGAAAA 1 dnaE_2 ( 26) TGGGAGAAGAT 1 cds-QMW93414.1 ( 26) AAGGTGGGTAG 1 cds-QMW90592.1 ( 87) TAAGGGGTGAA 1 cds-QMW90069.1 ( 83) AAGGGGAGGCT 1 cds-QMW93004.1 ( 56) AGGGAGATTAC 1 cds-QMW90839.1 ( 86) GGGGAGATAAT 1 cds-QMW90535.1 ( 87) CAGGAAGTGAA 1 cds-QMW90369.1 ( 87) TAAGGGGTGAG 1 cds-QMW90176.1 ( 86) AGGGAGAAATG 1 cds-QMW91892.1 ( 86) ACGGAGGAATA 1 cds-QMW91179.1 ( 20) ATGGAGGATTT 1 tenA ( 87) AAAGAGGTAAC 1 cds-QMW92978.1 ( 90) TGAGAGGAGCT 1 cds-QMW92894.1 ( 9) TAGGAGGAATT 1 cds-QMW92835.1 ( 57) AGGGTGGTATC 1 sigG ( 86) AAGGGGTTGAT 1 cds-QMW89955.1 ( 85) AAGGGAGTGCA 1 cds-QMW89829.1 ( 86) AGAGAGGATTA 1 polC ( 58) AAAGAGAAGAA 1 cds-QMW92941.1 ( 2) CAGGAGTTGTG 1 cds-QMW90823.1 ( 44) AAAGTGGAGAA 1 cds-QMW90719.1 ( 87) AAGGAGAAATA 1 cds-QMW90483.1 ( 81) TAGGAAGTGAG 1 cds-QMW90195.1 ( 85) AAGGAGTTAAG 1 cds-QMW89934.1 ( 30) TTGGTGGTGCA 1 cds-QMW89512.1 ( 85) AAGGTGGAATA 1 cds-QMW92955.1 ( 3) AGCGAGATGTA 1 cds-QMW92954.1 ( 43) ATGGGGGAAAC 1 cds-QMW89564.1 ( 88) AAGGAGTGAAA 1 cds-QMW92841.1 ( 26) GGGGAAGTTAA 1 cds-QMW90056.1 ( 84) ATTGAGGTGTA 1 cds-QMW89844.1 ( 42) AAGAAGGTGAT 1 cds-QMW91816.1 ( 88) TAGGTGATGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGAGGWGWA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 30330 bayes= 9.39446 E= 1.0e-028 89 -112 -6 -138 54 -271 111 -110 -104 -212 258 -418 -512 -271 291 -1324 121 -1324 -48 -238 -280 -1324 288 -1324 -96 -1324 254 -260 -27 -1324 16 57 -67 -271 216 -110 57 -1 -1324 -19 54 -90 26 -60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGAGGWGWA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 97 E= 1.0e-028 0.670103 0.061856 0.123711 0.144330 0.525773 0.020619 0.278351 0.175258 0.175258 0.030928 0.773196 0.020619 0.010309 0.020619 0.969072 0.000000 0.835052 0.000000 0.092784 0.072165 0.051546 0.000000 0.948454 0.000000 0.185567 0.000000 0.752577 0.061856 0.298969 0.000000 0.144330 0.556701 0.226804 0.020619 0.577320 0.175258 0.536082 0.134021 0.000000 0.329897 0.525773 0.072165 0.154639 0.247423 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARGGAGGWGWA MEME-2 regular expression -------------------------------------------------------------------------------- A[AG]GGAGG[TA][GA][AT][AT] -------------------------------------------------------------------------------- Time 93.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GVYTSSTMYSSGYSKAAGSMGTRGDSHAK MEME-3 width = 29 sites = 6 llr = 148 E-value = 1.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GVYTSSTMYSSGYSKAAGSMGTRGDSHAK MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:22:23:::222:78225:23:323a: pos.-specific C :35255:5333:5323::5522:2233:: probability G a3:235222578:53:283:8278352:5 matrix T ::55::7:52::3:5::::::5::2:2:5 bits 3.0 * 2.7 * 2.4 * * * 2.1 * * ** * * * Relative 1.8 * * ** * * * Entropy 1.5 * * ** * * ** * (35.5 bits) 1.2 * * ** *** * ***** ** * ** 0.9 *** ** * *** * ****** ** * ** 0.6 *** ** ************** ** * ** 0.3 *** ***************** ******* 0.0 ----------------------------- Multilevel GACTCCTCTGGGCGTAAGCAGTGGAGAAG consensus CT GG ACCC TCGC GC A GCC T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVYTSSTMYSSGYSKAAGSMGTRGDSHAK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------------------------- cds-QMW92954.1 6 1.89e-14 GCCCA GACTCCTACGGGAGGCAGCAGTGGGGAAT ATTGCACAAT cds-FF104_18755 14 7.67e-13 CAAAGGAATT GACGGGGGCCCGCACAAGCAGCGGAGCAT GTGGTTTAAT cds-QMW92955.1 72 1.64e-12 GTCTTCTCAG GGTTAGTCGGGACCTAAGGCGAGGCCGAG cds-QMW92660.1 35 1.80e-12 GAATGATTGG GCCTGCTCTTGGCGTAAACACTGGACCAG GTCTTGTTGG cds-QMW92978.1 60 1.45e-11 GAGACAGTTC GGTCCCTATCCGTCGCGGGCGTAGGAAAT TTGAGAGGAG cds-QMW93414.1 66 8.67e-11 GAGGGTATCG GCTACGACTGGGTGTAAGACGGACTGTAG GTGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVYTSSTMYSSGYSKAAGSMGTRGDSHAK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-QMW92954.1 1.9e-14 5_[+3]_66 cds-FF104_18755 7.7e-13 13_[+3]_58 cds-QMW92955.1 1.6e-12 71_[+3] cds-QMW92660.1 1.8e-12 34_[+3]_37 cds-QMW92978.1 1.4e-11 59_[+3]_12 cds-QMW93414.1 8.7e-11 65_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVYTSSTMYSSGYSKAAGSMGTRGDSHAK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GVYTSSTMYSSGYSKAAGSMGTRGDSHAK width=29 seqs=6 cds-QMW92954.1 ( 6) GACTCCTACGGGAGGCAGCAGTGGGGAAT 1 cds-FF104_18755 ( 14) GACGGGGGCCCGCACAAGCAGCGGAGCAT 1 cds-QMW92955.1 ( 72) GGTTAGTCGGGACCTAAGGCGAGGCCGAG 1 cds-QMW92660.1 ( 35) GCCTGCTCTTGGCGTAAACACTGGACCAG 1 cds-QMW92978.1 ( 60) GGTCCCTATCCGTCGCGGGCGTAGGAAAT 1 cds-QMW93414.1 ( 66) GCTACGACTGGGTGTAAGACGGACTGTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVYTSSTMYSSGYSKAAGSMGTRGDSHAK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 24264 bayes= 12.4288 E= 1.3e-003 -923 -923 295 -923 -11 130 137 -923 -923 189 -923 41 -111 30 37 41 -111 189 137 -923 -923 189 195 -923 -111 -923 37 83 -11 189 37 -923 -923 130 37 41 -923 130 195 -117 -923 130 237 -923 -111 -923 269 -923 -111 189 -923 -17 -111 130 195 -923 -923 30 137 41 89 130 -923 -923 121 -923 37 -923 -111 -923 269 -923 -111 189 137 -923 47 189 -923 -923 -923 30 269 -923 -111 30 37 41 -11 -923 237 -923 -923 30 269 -923 -11 30 137 -117 -111 130 195 -923 -11 130 37 -117 147 -923 -923 -923 -923 -923 195 41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVYTSSTMYSSGYSKAAGSMGTRGDSHAK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 6 E= 1.3e-003 0.000000 0.000000 1.000000 0.000000 0.333333 0.333333 0.333333 0.000000 0.000000 0.500000 0.000000 0.500000 0.166667 0.166667 0.166667 0.500000 0.166667 0.500000 0.333333 0.000000 0.000000 0.500000 0.500000 0.000000 0.166667 0.000000 0.166667 0.666667 0.333333 0.500000 0.166667 0.000000 0.000000 0.333333 0.166667 0.500000 0.000000 0.333333 0.500000 0.166667 0.000000 0.333333 0.666667 0.000000 0.166667 0.000000 0.833333 0.000000 0.166667 0.500000 0.000000 0.333333 0.166667 0.333333 0.500000 0.000000 0.000000 0.166667 0.333333 0.500000 0.666667 0.333333 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.166667 0.000000 0.833333 0.000000 0.166667 0.500000 0.333333 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.166667 0.166667 0.166667 0.500000 0.333333 0.000000 0.666667 0.000000 0.000000 0.166667 0.833333 0.000000 0.333333 0.166667 0.333333 0.166667 0.166667 0.333333 0.500000 0.000000 0.333333 0.333333 0.166667 0.166667 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GVYTSSTMYSSGYSKAAGSMGTRGDSHAK MEME-3 regular expression -------------------------------------------------------------------------------- G[ACG][CT]T[CG][CG]T[CA][TC][GC][GC]G[CT][GC][TG][AC]AG[CG][AC]GT[GA]G[AG][GC][AC]A[GT] -------------------------------------------------------------------------------- Time 134.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-QMW89411.1 8.49e-03 83_[+2(2.47e-06)]_6 noc 5.01e-01 100 cds-QMW89421.1 3.24e-01 100 cds-QMW89429.1 9.09e-06 85_[+2(5.34e-07)]_4 rpsR 5.02e-03 86_[+2(1.32e-05)]_3 cds-QMW89434.1 6.28e-01 100 cds-QMW89440.1 3.14e-02 44_[+1(4.57e-05)]_41 cds-QMW89470.1 1.08e-02 87_[+2(8.58e-06)]_2 cds-QMW89481.1 5.58e-01 100 cds-QMW89491.1 7.13e-02 100 cds-QMW89506.1 3.32e-02 77_[+1(1.59e-05)]_8 cds-QMW89509.1 5.79e-02 88_[+2(2.55e-05)]_1 cds-QMW89512.1 7.53e-02 100 cds-QMW92741.1 5.57e-01 100 dnaX 2.60e-02 83_[+2(1.47e-05)]_6 cds-QMW89563.1 4.97e-01 100 cds-QMW89564.1 8.21e-02 100 fusA 1.33e-02 50_[+2(3.26e-05)]_39 cds-QMW89585.1 1.06e-02 86_[+2(4.58e-05)]_3 cds-QMW89590.1 3.90e-02 86_[+2(2.83e-05)]_3 dnaE 5.00e-03 87_[+2(8.58e-06)]_2 dnaE_2 3.67e-02 100 cds-FF104_01395 9.74e-01 100 cds-QMW89659.1 2.79e-02 86_[+2(7.85e-05)]_3 cds-QMW89795.1 3.82e-01 100 cds-QMW89800.1 4.92e-01 100 cds-QMW89801.1 1.09e-01 80_[+1(6.94e-05)]_5 cds-QMW89825.1 6.62e-02 87_[+2(3.26e-05)]_2 cds-QMW89829.1 1.60e-01 100 cds-QMW89831.1 3.41e-01 100 cds-QMW89835.1 2.54e-02 100 cds-QMW89836.1 1.02e-02 81_[+1(3.30e-05)]_4 cds-QMW89844.1 2.72e-01 100 cds-QMW89846.1 5.25e-01 100 cds-QMW89856.1 8.97e-03 77_[+1(3.77e-06)]_8 cds-QMW89882.1 1.19e-01 88_[+2(9.68e-05)]_1 cds-QMW89912.1 9.88e-01 100 cds-QMW89923.1 8.95e-03 82_[+2(2.47e-06)]_7 cds-QMW89934.1 3.23e-03 24_[+3(4.41e-05)]_47 cds-QMW89950.1 5.58e-01 100 cds-QMW89955.1 7.00e-03 100 cds-QMW89976.1 3.74e-03 86_[+2(2.83e-05)]_3 cds-QMW90014.1 9.37e-01 100 cds-QMW90031.1 7.12e-02 100 cds-QMW90045.1 1.07e-01 100 cds-QMW90056.1 3.08e-01 100 cds-QMW90069.1 7.79e-02 100 cds-QMW90092.1 9.07e-02 86_[+2(7.85e-05)]_3 cds-QMW90097.1 1.12e-01 87_[+2(7.85e-05)]_2 cds-QMW90108.1 1.40e-01 100 cds-QMW90118.1 8.05e-01 100 cds-QMW90120.1 2.00e-01 100 cds-QMW90129.1 9.34e-01 100 cds-QMW90136.1 5.14e-01 100 cds-QMW90176.1 1.66e-01 100 polA 6.58e-01 100 cds-QMW90184.1 2.83e-02 80_[+1(5.07e-05)]_5 cds-QMW90185.1 3.18e-02 100 cds-QMW90187.1 8.58e-01 100 cds-QMW90195.1 1.38e-01 100 cds-QMW90263.1 7.38e-01 100 cds-QMW90264.1 4.84e-02 86_[+2(8.57e-05)]_3 ychF 7.65e-01 100 cds-QMW90291.1 3.58e-02 78_[+1(1.59e-05)]_7 cds-QMW90307.1 2.40e-02 81_[+1(5.63e-05)]_4 cds-QMW90335.1 6.82e-01 100 cds-QMW90352.1 9.78e-02 84_[+2(6.28e-05)]_5 cds-QMW90369.1 1.27e-01 100 sigK 6.19e-02 87_[+2(3.64e-05)]_2 sigE 6.98e-03 85_[+2(2.28e-05)]_4 sigG 1.15e-01 100 nrdR 7.26e-02 82_[+2(6.28e-05)]_7 cds-QMW90411.1 2.51e-02 84_[+2(7.85e-05)]_5 rpmB 8.35e-04 79_[+1(2.39e-07)]_6 cds-QMW90426.1 8.25e-03 10_[+2(3.26e-05)]_79 cds-QMW90436.1 5.95e-05 85_[+2(5.34e-07)]_4 rpsP 1.87e-04 83_[+2(1.45e-07)]_6 cds-QMW90449.1 7.78e-03 84_[+2(1.74e-05)]_5 codY 4.43e-02 87_[+2(2.83e-05)]_2 rpsB 2.47e-03 72_[+2(1.74e-05)]_3_[+2(2.55e-05)]_\ 3 cds-QMW90457.1 4.69e-02 85_[+2(6.28e-05)]_4 cds-QMW90466.1 1.09e-03 86_[+2(1.14e-05)]_3 nusA 1.20e-02 84_[+2(4.58e-05)]_5 cds-QMW90469.1 8.34e-03 83_[+2(1.32e-05)]_6 cds-QMW90470.1 3.71e-01 100 infB 2.37e-02 55_[+2(2.00e-05)]_20_[+2(7.08e-05)]_\ 3 rpsO 1.47e-02 83_[+2(1.32e-05)]_6 cds-QMW90483.1 9.46e-03 100 cds-QMW90534.1 8.11e-02 80_[+1(5.07e-05)]_5 cds-QMW90535.1 1.80e-02 100 cds-QMW90592.1 1.52e-01 100 cds-QMW90613.1 3.74e-02 83_[+2(1.47e-05)]_6 cds-QMW90650.1 4.76e-02 89_[+2(2.00e-05)] cds-QMW90659.1 6.68e-01 100 rpmI 1.72e-02 100 rplT 1.07e-02 85_[+2(5.66e-05)]_4 cds-QMW90690.1 7.73e-01 100 cds-QMW90710.1 2.69e-03 85_[+2(2.55e-05)]_4 cds-QMW90719.1 2.24e-01 100 cds-QMW90732.1 9.41e-04 85_[+2(2.62e-07)]_4 cds-QMW90823.1 7.52e-03 100 cds-QMW90839.1 1.39e-01 100 cds-QMW90877.1 7.68e-01 100 cds-QMW90878.1 9.43e-03 86_[+2(2.83e-05)]_3 cds-QMW90886.1 4.30e-02 86_[+2(1.74e-05)]_3 cds-QMW90920.1 5.12e-01 100 tenA 7.33e-02 100 cds-QMW90942.1 1.01e-01 100 cds-QMW90950.1 4.25e-03 81_[+1(4.55e-06)]_4 cds-QMW90990.1 6.57e-02 89_[+2(3.64e-05)] lexA 3.54e-02 85_[+2(2.55e-05)]_4 cds-QMW91035.1 1.35e-01 100 cds-QMW91044.1 5.23e-01 100 cds-QMW91064.1 1.82e-02 81_[+1(7.67e-06)]_4 cds-QMW91073.1 4.36e-01 100 cds-QMW91080.1 9.04e-02 81_[+1(5.07e-05)]_4 cds-QMW91096.1 5.15e-01 100 cds-QMW91116.1 2.99e-01 100 cds-QMW91117.1 1.51e-01 100 cds-QMW91118.1 9.23e-04 79_[+1(1.21e-05)]_6 cds-QMW91120.1 1.92e-01 100 cds-QMW91124.1 7.93e-01 100 cds-QMW91140.1 2.43e-02 85_[+2(2.83e-05)]_4 cds-QMW91142.1 2.94e-01 100 cds-QMW91150.1 1.98e-02 80_[+1(1.39e-05)]_5 cds-QMW91152.1 4.60e-02 100 cds-QMW91157.1 5.90e-04 80_[+1(8.97e-06)]_5 cds-QMW91162.1 6.05e-01 100 cds-QMW91175.1 1.08e-01 100 cds-FF104_09470 2.24e-01 100 cds-QMW91179.1 3.64e-03 100 cds-QMW91181.1 2.64e-01 100 cds-QMW91196.1 1.35e-01 100 cds-QMW91201.1 6.63e-02 80_[+1(3.68e-05)]_5 cds-QMW91214.1 2.66e-01 100 cds-QMW91220.1 7.15e-01 100 cds-QMW91223.1 1.42e-02 81_[+1(6.50e-06)]_4 cds-QMW91231.1 2.60e-01 100 cds-QMW91250.1 1.65e-01 100 cds-QMW91257.1 5.38e-02 86_[+2(8.57e-05)]_3 cds-QMW91265.1 3.41e-01 100 cds-QMW91278.1 2.22e-01 100 cds-QMW91290.1 1.15e-01 81_[+1(8.53e-05)]_4 sigI 1.85e-01 100 cds-QMW91328.1 6.49e-01 100 cds-QMW91346.1 1.14e-01 100 cds-QMW91349.1 4.61e-02 82_[+1(8.53e-05)]_3 nusB 5.61e-02 83_[+1(5.07e-05)]_2 efp 4.55e-02 80_[+1(2.95e-05)]_5 cds-QMW91419.1 7.87e-03 79_[+1(3.09e-06)]_6 cds-QMW91447.1 3.83e-02 81_[+1(8.53e-05)]_4 cds-QMW91517.1 2.43e-01 100 rpsD 8.00e-02 84_[+2(7.08e-05)]_5 cds-QMW91623.1 1.69e-01 100 cds-QMW91708.1 3.48e-02 79_[+1(3.68e-05)]_6 cds-QMW91717.1 8.51e-03 100 cds-QMW91793.1 2.12e-02 84_[+1(6.94e-05)]_1 cds-QMW91809.1 7.23e-02 81_[+1(4.10e-05)]_4 cds-QMW91815.1 8.05e-01 100 cds-QMW91816.1 1.11e-01 100 cds-QMW91870.1 5.88e-01 100 cds-QMW91892.1 2.03e-01 100 cds-QMW91897.1 3.69e-02 81_[+1(9.46e-05)]_4 cds-QMW91904.1 1.14e-01 82_[+1(6.94e-05)]_3 cds-QMW91905.1 3.67e-03 87_[+2(2.47e-06)]_2 cds-QMW91910.1 5.40e-02 82_[+1(9.46e-05)]_3 cds-QMW91936.1 4.19e-01 100 cds-QMW91938.1 6.18e-01 100 cds-QMW91946.1 7.35e-02 80_[+1(4.10e-05)]_5 cds-QMW91947.1 2.33e-01 100 cds-QMW91952.1 5.84e-01 100 cds-QMW91975.1 3.81e-01 100 cds-QMW91977.1 6.77e-02 80_[+1(3.30e-05)]_5 cds-QMW92005.1 5.49e-01 100 cds-QMW92014.1 4.23e-02 100 cds-QMW92789.1 3.29e-03 79_[+1(1.27e-06)]_6 cds-QMW92030.1 3.04e-01 100 rpoD 3.64e-02 78_[+1(1.59e-05)]_7 cds-QMW92052.1 1.36e-02 80_[+1(1.59e-05)]_5 cds-QMW92056.1 1.48e-01 100 hrcA 4.14e-02 81_[+1(2.33e-05)]_4 rpsT 1.63e-04 83_[+2(1.36e-06)]_6 holA 3.94e-01 100 sigF 3.19e-01 100 cds-QMW92080.1 7.11e-02 80_[+1(5.07e-05)]_5 cds-QMW92790.1 7.33e-02 80_[+1(4.10e-05)]_5 rfbF 2.87e-01 100 cds-QMW92149.1 9.70e-02 100 cds-QMW92169.1 7.75e-02 100 cds-QMW92179.1 4.75e-02 80_[+1(2.06e-05)]_5 cds-QMW92190.1 7.08e-01 100 cds-QMW92205.1 8.11e-01 100 cds-QMW92224.1 6.56e-01 100 cds-QMW92225.1 1.09e-01 13_[+1(6.94e-05)]_72 rfbF_2 4.19e-01 100 cds-QMW92264.1 1.28e-01 81_[+1(8.53e-05)]_4 cds-QMW92269.1 2.85e-03 79_[+1(7.72e-07)]_6 cds-QMW92270.1 7.49e-01 100 rplU 7.48e-03 79_[+1(5.45e-06)]_6 rpsA 1.61e-01 100 cds-QMW92303.1 5.92e-01 100 cds-QMW92312.1 7.88e-02 83_[+1(4.10e-05)]_2 atpC 2.35e-02 79_[+1(3.30e-05)]_6 atpD 7.83e-03 53_[+1(5.63e-05)]_12_[+1(2.51e-06)]_\ 5 cds-QMW92334.1 3.50e-02 80_[+1(7.69e-05)]_5 cds-QMW92335.1 1.07e-01 81_[+1(8.53e-05)]_4 cds-QMW92336.1 8.77e-01 100 cds-QMW92337.1 8.40e-02 76_[+1(8.53e-05)]_9 atpE 2.15e-02 81_[+1(2.33e-05)]_4 cds-QMW92339.1 1.16e-03 80_[+1(6.94e-05)]_5 cds-QMW92346.1 1.57e-01 100 rpmE 6.12e-04 84_[+2(8.58e-06)]_5 cds-QMW92353.1 2.81e-02 81_[+1(5.63e-05)]_4 cds-QMW92384.1 1.14e-02 81_[+1(3.09e-06)]_4 cds-QMW92390.1 3.65e-01 100 cds-QMW92418.1 1.70e-01 100 cds-QMW92436.1 1.01e-01 80_[+1(9.46e-05)]_5 cds-QMW92442.1 7.87e-01 100 cds-QMW92444.1 6.19e-02 85_[+2(5.06e-05)]_4 cds-QMW92448.1 3.58e-02 80_[+1(1.39e-05)]_5 cds-QMW92457.1 1.59e-01 100 cds-QMW92486.1 5.72e-02 79_[+1(2.62e-05)]_6 cds-QMW92492.1 9.27e-01 100 cds-QMW92496.1 2.28e-02 83_[+1(7.67e-06)]_2 cds-QMW92515.1 4.76e-02 81_[+1(2.62e-05)]_4 rpsI 1.56e-02 81_[+1(9.46e-05)]_4 rplM 9.18e-03 81_[+1(4.57e-05)]_4 cds-QMW92544.1 1.29e-02 81_[+1(3.77e-06)]_4 cds-QMW92545.1 3.11e-03 80_[+1(6.50e-06)]_5 rpsD_2 3.66e-03 79_[+1(3.30e-05)]_6 rpsK 6.38e-03 81_[+1(1.62e-06)]_4 rpsM 3.40e-02 77_[+1(2.33e-05)]_8 rpmJ 8.48e-03 81_[+1(6.50e-06)]_4 infA 3.33e-02 76_[+1(1.39e-05)]_9 cds-QMW92551.1 2.93e-01 100 cds-QMW92555.1 3.06e-02 79_[+1(1.21e-05)]_6 rpmD 3.93e-02 79_[+1(1.59e-05)]_6 cds-QMW92557.1 2.54e-04 8_[+3(1.63e-05)]_44_[+1(2.62e-05)]_\ 4 cds-QMW92558.1 1.72e-01 100 cds-QMW92559.1 2.16e-02 81_[+1(1.39e-05)]_4 rpsH 2.64e-02 79_[+1(2.33e-05)]_6 cds-QMW92561.1 1.57e-03 81_[+1(1.62e-06)]_4 rplE 4.47e-03 80_[+1(9.97e-07)]_5 cds-QMW92563.1 4.01e-03 80_[+1(3.09e-06)]_5 rplN 1.51e-02 80_[+1(1.59e-05)]_5 rpsQ 4.91e-03 79_[+1(3.09e-06)]_6 cds-QMW92566.1 1.67e-02 100 rplP 3.85e-03 80_[+1(2.03e-06)]_5 rpsC 3.58e-03 79_[+1(7.72e-07)]_6 cds-QMW92569.1 7.79e-02 80_[+1(6.94e-05)]_5 rpsS 7.30e-04 80_[+1(1.05e-05)]_5 rplB 2.67e-03 78_[+1(9.97e-07)]_7 cds-QMW92572.1 5.17e-03 78_[+1(2.03e-06)]_7 rplD 7.33e-03 80_[+1(3.09e-06)]_5 cds-QMW92574.1 3.32e-03 79_[+1(1.05e-05)]_6 rpsJ 1.93e-03 80_[+1(9.97e-07)]_5 tuf 8.80e-02 80_[+1(6.25e-05)]_5 fusA_2 5.18e-03 79_[+1(5.07e-05)]_6 rpsG 8.35e-03 80_[+1(3.09e-06)]_5 cds-QMW92579.1 1.18e-02 81_[+1(5.45e-06)]_4 rpoC 5.65e-02 80_[+1(6.25e-05)]_5 rpoB 1.87e-01 100 cds-QMW92582.1 1.16e-01 100 cds-QMW92583.1 8.34e-04 76_[+1(2.62e-05)]_9 cds-QMW92584.1 1.06e-01 100 rplK 4.16e-02 79_[+1(3.30e-05)]_6 nusG 9.92e-03 57_[+1(3.30e-05)]_28 rpmG 6.20e-02 81_[+1(3.68e-05)]_4 tuf_2 9.76e-04 80_[+1(1.21e-05)]_5 sigH 3.48e-01 100 cds-QMW92606.1 5.59e-01 100 cds-QMW92611.1 3.48e-02 24_[+1(1.82e-05)]_61 greA 5.57e-02 44_[+1(6.25e-05)]_41 cds-QMW92624.1 1.16e-02 80_[+1(9.46e-05)]_5 cds-QMW92631.1 1.39e-02 76_[+1(7.67e-06)]_9 mfd 8.40e-01 100 cds-QMW92660.1 2.47e-09 34_[+3(1.80e-12)]_37 cds-QMW92680.1 4.33e-02 100 cds-QMW92681.1 9.23e-02 81_[+1(5.07e-05)]_4 cds-QMW92719.1 1.04e-01 80_[+1(8.53e-05)]_5 cds-QMW92728.1 2.79e-01 100 cds-QMW92738.1 3.82e-03 81_[+1(1.21e-05)]_4 cds-QMW92813.1 3.11e-02 5_[+3(4.73e-05)]_66 cds-QMW92835.1 3.75e-03 100 cds-QMW92841.1 8.30e-02 100 cds-QMW92868.1 9.27e-05 22_[+3(4.80e-06)]_37_[+2(3.64e-05)]_\ 1 cds-QMW92894.1 8.43e-02 100 cds-QMW92909.1 1.67e-02 100 cds-QMW92929.1 1.37e-03 62_[+2(4.66e-06)]_27 cds-QMW92933.1 1.25e-01 100 cds-QMW92939.1 1.37e-01 100 cds-QMW92941.1 2.42e-01 100 cds-QMW92954.1 1.47e-11 5_[+3(1.89e-14)]_66 cds-QMW92955.1 5.84e-10 71_[+3(1.64e-12)] cds-QMW92957.1 4.38e-01 100 cds-FF104_18755 1.25e-09 13_[+3(7.67e-13)]_58 cds-QMW92978.1 2.67e-09 59_[+3(1.45e-11)]_12 cds-QMW92991.1 4.11e-01 100 cds-QMW92997.1 1.64e-01 100 cds-QMW93004.1 2.26e-03 40_[+3(4.20e-05)]_31 cds-QMW93007.1 6.94e-01 100 cds-QMW93012.1 1.65e-01 100 cds-QMW93015.1 1.30e-02 9_[+2(2.55e-05)]_80 treR 5.32e-02 100 cds-QMW93050.1 8.73e-02 100 cds-QMW93076.1 7.72e-01 100 cds-QMW93081.1 1.03e-02 31_[+2(6.28e-05)]_58 cds-QMW93093.1 8.16e-01 100 cds-QMW93105.1 7.94e-03 27_[+2(3.26e-05)]_62 cds-QMW93117.1 8.81e-01 100 cds-QMW93122.1 3.59e-01 100 greA_2 5.61e-01 100 cds-QMW93146.1 1.57e-02 89_[+2(8.57e-05)] cds-QMW93153.1 9.51e-01 100 cds-QMW93155.1 6.95e-02 14_[+2(7.85e-05)]_75 cds-QMW93164.1 9.24e-01 100 cds-QMW93169.1 9.60e-01 100 cds-QMW93171.1 5.74e-01 100 cds-QMW93214.1 1.65e-01 100 cds-QMW93217.1 5.96e-01 100 cds-QMW93223.1 6.78e-01 100 cds-QMW93231.1 3.79e-01 100 cds-QMW93259.1 8.49e-02 100 cds-QMW93260.1 5.79e-02 83_[+2(2.83e-05)]_6 cds-QMW93266.1 3.23e-01 100 cds-QMW93280.1 4.59e-01 100 cds-QMW93307.1 2.04e-01 100 cds-QMW93342.1 9.10e-01 100 polC 7.36e-02 100 cds-QMW93351.1 1.79e-01 100 cds-QMW93361.1 2.10e-01 100 cds-QMW93376.1 3.91e-01 100 cds-FF104_21040 5.37e-01 100 cds-QMW93441.1 9.90e-01 100 cds-QMW93398.1 1.24e-01 100 cds-QMW93414.1 1.82e-08 65_[+3(8.67e-11)]_6 cds-QMW93449.1 2.26e-02 34_[+2(6.28e-05)]_55 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************