RID: 8TYZJDGA016 Job Title:Q9WJC7:RecName: Full=Polyprotein P1234; Short=P1234;... Program: BLASTP Query: RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] ID: Q9WJC7.3(amino acid) Length: 794 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 1670 1670 100% 0.0 100.00 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 1645 1645 100% 0.0 98.36 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 1575 1575 100% 0.0 93.20 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 1575 1575 100% 0.0 92.95 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 1575 1575 100% 0.0 93.20 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 1223 1223 99% 0.0 72.89 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 1207 1207 99% 0.0 71.75 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 1202 1202 99% 0.0 71.50 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 1200 1200 99% 0.0 72.64 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 981 981 100% 0.0 59.00 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 979 979 100% 0.0 58.88 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 964 964 100% 0.0 58.07 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 954 954 100% 0.0 57.75 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 938 938 100% 0.0 57.45 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 937 937 100% 0.0 56.57 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 932 932 100% 0.0 56.32 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 931 931 100% 0.0 56.32 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 930 930 100% 0.0 56.32 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 927 927 100% 0.0 56.07 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 921 921 96% 0.0 59.41 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 888 888 98% 0.0 55.81 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 882 882 98% 0.0 55.31 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 815 815 98% 0.0 52.48 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 645 645 98% 0.0 43.65 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 640 640 98% 0.0 43.89 2593 Q8QL53.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 79.0 79.0 31% 5e-15 27.47 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 75.9 75.9 33% 4e-14 26.74 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 63.5 63.5 34% 2e-10 24.83 1601 Q88920.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 60.1 60.1 30% 3e-09 25.00 3094 Q08534.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 58.9 58.9 33% 6e-09 25.71 1609 P18339.2 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 58.2 58.2 31% 1e-08 25.28 1597 Q66220.2 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 536 to 1329 Score:1670 bits(4324), Expect:0.0, Method:Compositional matrix adjust., Identities:794/794(100%), Positives:794/794(100%), Gaps:0/794(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR Sbjct 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 Query 1316 TNIYTGSGLHEAGC 1329 TNIYTGSGLHEAGC Sbjct 1316 TNIYTGSGLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 536 to 1329 Score:1645 bits(4261), Expect:0.0, Method:Compositional matrix adjust., Identities:781/794(98%), Positives:787/794(99%), Gaps:0/794(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPRGLIKVTSY GEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTK KK+DLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 895 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYKGNEIMTAAASQGLTRK VYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVR+FGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 SIRNNHWDNSPSPNMYGLN EVVRQLSRRYPQLPRAVTTGR YDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 1135 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 PVNRRLPHALVTQHAD+PPSDFSAFVSKLKGRTVLVVGEKM+ISGK VDWLSETPD+TFR Sbjct 1136 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 1195 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 ARLDLGIP+ELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 Query 1316 TNIYTGSGLHEAGC 1329 TNIYTGS LHEAGC Sbjct 1316 TNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 536 to 1329 Score:1575 bits(4079), Expect:0.0, Method:Compositional matrix adjust., Identities:740/794(93%), Positives:772/794(97%), Gaps:0/794(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPRGLIKVTSY GEDKIGSYAVLSPQAVL+SEKL+CIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVEPYHGKVVVPEG AIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 + VKPSEH+GEYLYDID+KQCVKKELV+GLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 TQVFHKSISRRCTKSVTSVVSTLFYDK+MRTTNP+++KI IDTTGSTK K++DLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTNPKETKIVIDTTGSTKPKQDDLILTCFR 895 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYKGNEIMTAAASQGLTRK VYAVRYKVNENPLYAPTSEHVNVLLTRTED+I Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIKTLTAKYPG+FTAT+EEWQAEHDAIMRHILE+PDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 ALVPVLKTAGID+TTEQWNTVDYF+ DKAHSAEIVLNQLCVR+FGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 SIRNNHWDNSPSPNMYGLN EVVRQLSRRYPQLPRAV TGRVYDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLV 1135 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 PVNRRLPHALV H +HP SDFS+FVSKLKGRTVLVVGEK+++ GK VDWLS+ P+ATFR Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFR 1195 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 ARLDLGIP ++PKYDI+FVNVRT Y+YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYGYADRASESIIGA+ARQFKFSRVCKPK S EETEVLFVFIG+DRK RTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 1316 TNIYTGSGLHEAGC 1329 TNIYTGS LHEAGC Sbjct 1316 TNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 536 to 1329 Score:1575 bits(4079), Expect:0.0, Method:Compositional matrix adjust., Identities:738/794(93%), Positives:774/794(97%), Gaps:0/794(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPRGLIKVTSY GEDKIGSYAVLSPQAVL+SEKL+CIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVEPYHGKVVVPEG AIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 + VKPSEH+GEYLYDID+KQCVKKELV+GLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVK++KGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKRIKGLDVNARTVDSVLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 GCK+PVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKYPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNP+++KIEIDTTGSTK K++DLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKQDDLILTCFR 895 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYKGNE+MTAAASQGLTRK VYAVRYKVNENPLYAPTSEHVNVLLTRTED+I Sbjct 896 GWVKQLQIDYKGNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIKTLTAKYPG+FTAT+EEWQAEHDAIMRHILE+PDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 ALVPVLKTAGID+TTEQWNTVDYF+ DKAHSAEIVLNQLCVR+FGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 SIRNNHWDNSPSPNMYGLN EVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 PVNRRLPHALV H +HP SDFS+FVSKLKGRTVLVVGEK+++ GK VDWLS+ P+ATFR Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKTVDWLSDRPEATFR 1195 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 ARLDLGIP ++PKYDI+F+NVRT Y+YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPGDVPKYDIIFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYGYADRASESIIGA+ARQFKFSRVCKPK S EETEVLFVFIG+DRK RTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 1316 TNIYTGSGLHEAGC 1329 TNIYTGS LHEAGC Sbjct 1316 TNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 536 to 1329 Score:1575 bits(4078), Expect:0.0, Method:Compositional matrix adjust., Identities:740/794(93%), Positives:771/794(97%), Gaps:0/794(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPRGLIKVTSY GEDKIGSYAVLSPQAVL+SEKL+CIHPLAEQVIVITHSGRKGRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVEPYHGKVVVPEG AIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 + VKPSEH+GEYLYDID+KQCVKKELV+GLGLTGELVDPPFHEFAYESLRTRPAAPYQVP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNP+++KI IDTTGSTK K++DLILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIVIDTTGSTKPKQDDLILTCFR 895 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYKGNEIMTAAASQGLTRK VYAVRYKVNENPLYAPTSEHVNVLLTRTED+I Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIK LTAKYPG+FTAT+EEWQAEHDAIMRHILE+PDPTDVFQNKANVCWAK Sbjct 956 VWKTLAGDPWIKILTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 ALVPVLKTAGID+TTEQWNTVDYF+ DKAHSAEIVLNQLCVR+FGLDLDSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 SIRNNHWDNSPSPNMYGLN EVVRQLSRRYPQLPRAV TGRVYDMNTGTLRNYDPRINLV Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLV 1135 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 PVNRRLPHALV H +HP SDFS+FVSKLKGRTVLVVGEK+++ GK VDWLS+ P+ATFR Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKKVDWLSDQPEATFR 1195 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 ARLDLGIP ++PKYDIVF+NVRT Y+YHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI Sbjct 1196 ARLDLGIPGDVPKYDIVFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYGYADRASESIIGA+ARQFKFSRVCKPK S EETEVLFVFIG+DRK RTHNPYKLSSTL Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSHEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 1316 TNIYTGSGLHEAGC 1329 TNIYTGS LHEAGC Sbjct 1316 TNIYTGSRLHEAGC 1329 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 534 to 1326 Score:1223 bits(3165), Expect:0.0, Method:Compositional matrix adjust., Identities:578/793(73%), Positives:662/793(83%), Gaps:0/793(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 VEPYHG+V+VP G AIP+ DFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 594 KVEPYHGRVIVPSGTAIPILDFQALSESATIVFNEREFVNRYLHHIAVNGGALNTDEEYY 653 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 +VVK +E + EY++DID K+CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 654 KVVKSTETDSEYVFDIDAKKCVKKGDAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+D+ ARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCMEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 G KH V+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHSVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 T+V+HKSISRRCTK+VTS+VSTLFYDKRMRT NP + KI IDTT +TK K+D+ILTCFR Sbjct 834 TEVYHKSISRRCTKTVTSIVSTLFYDKRMRTVNPCNDKIIIDTTSTTKPLKDDIILTCFR 893 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYK +EIMTAAASQGLTRK VYAVRYKVNENPLYA TSEHVNVLLTRTE +I Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIKTLTA YPG+FTAT+EEWQAEHDAIM ILE P +DVFQNK NVCWAK Sbjct 954 VWKTLAGDPWIKTLTASYPGNFTATLEEWQAEHDAIMAKILETPASSDVFQNKVNVCWAK 1013 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 AL PVL TA I LT QW T+ FK+DKA+S E+ LN C R+FG+D+DSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAYSPEMALNFFCTRFFGVDIDSGLFSAPTVPL 1073 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 + N HWDNSP PNMYGL ++L+RRYP + +AV TGRV D+ T T+++Y+P IN+V Sbjct 1074 TYTNEHWDNSPGPNMYGLCMRTAKELARRYPCILKAVDTGRVADVRTDTIKDYNPLINVV 1133 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 P+NRRLPH+LV H D+S V+K+ G+TVLVVG MNI GK V+ L +P T++ Sbjct 1134 PLNRRLPHSLVVTHRYTGNGDYSQLVTKMTGKTVLVVGTPMNIPGKRVETLGPSPQCTYK 1193 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 A LDLGIP L KYDI+F+NVRT YR+HHYQQCEDHAI SMLT+KA HLN GGTC+++ Sbjct 1194 AELDLGIPAALGKYDIIFINVRTPYRHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCIAL 1253 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYG ADRA+E+II AVAR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLQDQDRLSVVL 1313 Query 1316 TNIYTGSGLHEAG 1328 NIY GS HEAG Sbjct 1314 NNIYQGSTQHEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 534 to 1326 Score:1207 bits(3123), Expect:0.0, Method:Compositional matrix adjust., Identities:569/793(72%), Positives:661/793(83%), Gaps:0/793(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 VEPYHG+V+VP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGALNTDEEYY Sbjct 594 KVEPYHGRVIVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 +V++ E E EY++DID K+CVKK + L G+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 654 KVLRSGEAESEYVFDIDAKKCVKKAEAGPMCLVGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+DV ARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDVAARTVDSVLLN 773 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 G KHPV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 T+V+HKSISRRCT++VT++VSTLFYDKRMRT NP KI IDTT +TK K+D+ILTCFR Sbjct 834 TEVYHKSISRRCTRTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPLKDDIILTCFR 893 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYK +EIMTAAASQGLTRK VYAVRYKVNENPLYA TSEHVNVLLTRTE +I Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIKTLTA YPG+F+AT+EEWQAEHDAIM+ +LE P +DV+QNK +VCWAK Sbjct 954 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMKRVLETPANSDVYQNKVHVCWAK 1013 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 AL PVL TA I LT QW T+ FK+DKA S E+ LN LC R+FG+D+DSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 1073 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 + N HWDNSP PN YGL ++L+RRYP + +AV TGRV D+ T T+R+Y+P IN+V Sbjct 1074 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRVADVRTNTIRDYNPMINVV 1133 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 P+NRRLPH+LV H ++S +SKL G+T+LV+G +N+ GK V+ L P T++ Sbjct 1134 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLTGKTILVIGTPINVPGKRVETLGPGPQCTYK 1193 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 A LDLGIP+ + KYDI+FVNVRT Y++HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1194 ADLDLGIPSMIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 1253 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYG ADRA+E+II AVAR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSVVL 1313 Query 1316 TNIYTGSGLHEAG 1328 NIY GS +EAG Sbjct 1314 NNIYQGSTQYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 534 to 1326 Score:1202 bits(3111), Expect:0.0, Method:Compositional matrix adjust., Identities:567/793(72%), Positives:661/793(83%), Gaps:0/793(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 534 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 VEPYHG+VVVP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGA+NTDEEYY Sbjct 594 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 653 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 +V++ SE + EY++DID ++CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 654 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+D+ ARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 G KHPV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 T+V+HKSISRRCTK+VT++VSTLFYDKRMRT NP KI IDTT +TK +++D+ILTCFR Sbjct 834 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 893 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYK +EIMTAAASQGLTRK VYAVRYKVNENPLYA TSEHVNVLLTRTE +I Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIKTLTA YPG+F+AT+EEWQAEHDAIM ILE P +DV+QNK +VCWAK Sbjct 954 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 1013 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 AL PVL TA I LT QW T+ FK+DKA S E+ LN LC R+FG+D+DSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 1073 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 + N HWDNSP PN YGL ++L+RRYP + +AV TGR+ D+ T T+++Y P IN+V Sbjct 1074 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 1133 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 P+NRRLPH+LV H ++S +SKL G+TVLV+G +++ GK V+ L P T++ Sbjct 1134 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 1193 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 A LDLGIP+ + KYDI+FVNVRT Y++HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1194 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 1253 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYG ADRA+E+II AVAR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 1313 Query 1316 TNIYTGSGLHEAG 1328 NIY GS +EAG Sbjct 1314 NNIYQGSTQYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 534 to 1326 Score:1200 bits(3104), Expect:0.0, Method:Compositional matrix adjust., Identities:576/793(73%), Positives:667/793(84%), Gaps:0/793(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 GSVETPRG I+VTSY GE+KIGSYA+LSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 534 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 VEPYHGKV+VPEG A+PVQDFQALSESATIV+NEREFVNRYLHHIA +GGALNTDEEYY Sbjct 594 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 + VK + + EY++DID ++CVK+E L LTG+LVDPPFHEFAYESL+TRPAAP++VP Sbjct 654 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDV++M+ +DV ARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 773 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 G KHPV TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 774 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 833 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 T+V+HKSISRRCT++VT++VSTLFYDKRM+T NP KI IDTTG+TK K+DLILTCFR Sbjct 834 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 893 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVKQLQIDYK +EIMTAAASQGLTRK VYAVRYKVNENPLY+ TSEHVNVLLTRTE +I Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 953 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 VWKTLAGDPWIKTLTAKYPGDFTA++++WQ EHDAIM +L+KP DVFQNK NVCWAK Sbjct 954 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 1013 Query 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 AL PVL TA I LT +QW T+ FK D+A+S E+ LN C R+FG+DLDSGLFSAPTV L Sbjct 1014 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 1073 Query 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 + R+ HWDNSP NMYGLN EV ++LSRRYP + +AV TGRV D+ T+++Y P IN+V Sbjct 1074 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 1133 Query 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 P+NRRLPH+L+ H +D S F+SK+KG++VLV+G+ ++I GK V+ + P T R Sbjct 1134 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 1193 Query 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 LDLGIP+ + KYDI+FVNVRT YR HHYQQCEDHAI SMLT KA HLN GGTCV+I Sbjct 1194 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 1253 Query 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 GYG ADRA+E+II AVAR F+F+RVC+PK + E TEVLFVF G D TH+ +L L Sbjct 1254 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 1313 Query 1316 TNIYTGSGLHEAG 1328 NIY GS +EAG Sbjct 1314 DNIYQGSTRYEAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 535 to 1332 Score:981 bits(2537), Expect:0.0, Method:Compositional matrix adjust., Identities:472/800(59%), Positives:587/800(73%), Gaps:8/800(1%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPR +KVT + IGSY +LSPQ VL+SEKL IHPLAEQV V+THSGR GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 V+ E EY++D+DKK C+KKE SGL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVK+ +GLDV ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 775 GCKRGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CT+V HKSISRRCT VT++VSTL Y +MRTTN ++ I+IDTTGS+K D++LTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQIDY+G+E+MTAAASQGLTRK VYAVR KVNENPLY+P SEHVNVLLTRTE++ Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 +VWKTL+GDPWIK LT GDF+AT+EEWQ EHD IMR + E+P D FQNKA VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWQEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 1015 KALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVP 1074 K LV VL+TAGI +T ++WNT+ F+ED+A+S E+ LN++C RY+G+DLDSGLFSA +V Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 1075 LSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINL 1134 L NNHWDN P MYG NHEV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 1135 VPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGE-KMNISGKAVDWLS----ET 1189 VP NRRLPHALVT + + K+ G +L+V E + I K V W++ Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLAIPHKRVFWIAPPRVSG 1194 Query 1190 PDATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPG 1249 D T+ LDLG+P + +YD+VFVN+ T+YR HHYQQC DH+++L ML + L PG Sbjct 1195 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 1252 Query 1250 GTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPY 1309 G+ + YGYADR SE ++ A+AR+F RV +P TEV +F FD R + Sbjct 1253 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 1312 Query 1310 KLSSTLTNIYTGSGLHEAGC 1329 + + L+++Y +GLH AGC Sbjct 1313 QANQKLSSMYACNGLHTAGC 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 535 to 1332 Score:979 bits(2530), Expect:0.0, Method:Compositional matrix adjust., Identities:471/800(59%), Positives:586/800(73%), Gaps:8/800(1%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPR +KVT + IGSY +LSPQ VL+SEKL IHPLAEQV V+THSGR GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 V+ E EY++D+DKK C+KKE SGL LTG+L++PPFHEFAYE L+ RPAAPY Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 IGV+GVPGSGKS IIK+ VT +DLV S KKENC EI+ DVK+ +GLDV ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GCK VE LY+DEAFACH+GTL ALIA++RP K VLCGDPKQCGFFN+M LKVH+NH I Sbjct 775 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CT+V HKSISRRCT VT++VSTL Y +MRTTN ++ I+IDTTGS+K D++LTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQIDY+G+E+MTAAASQGLTRK VYAVR KVNENPLY+P SEHVNVLLTRTE++ Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 +VWKTL+GDPWIK LT GDF+AT+EEW EHD IMR + E+P D FQNKA VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 1015 KALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVP 1074 K LV VL+TAGI +T ++WNT+ F+ED+A+S E+ LN++C RY+G+DLDSGLFSA +V Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 1075 LSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINL 1134 L NNHWDN P MYG NHEV R+ + R+P L + +G ++ L+ + N+ Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 1135 VPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGE-KMNISGKAVDWLS----ET 1189 VP NRRLPHALVT + + K+ G +L+V E + I K V W++ Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 1194 Query 1190 PDATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPG 1249 D T+ LDLG+P + +YD+VFVN+ T+YR HHYQQC DH+++L ML + L PG Sbjct 1195 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 1252 Query 1250 GTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPY 1309 G+ + YGYADR SE ++ A+AR+F RV +P TEV +F FD R + Sbjct 1253 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 1312 Query 1310 KLSSTLTNIYTGSGLHEAGC 1329 + + L+++Y +GLH AGC Sbjct 1313 QANQKLSSMYACNGLHTAGC 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 534 to 1331 Score:964 bits(2491), Expect:0.0, Method:Compositional matrix adjust., Identities:464/799(58%), Positives:585/799(73%), Gaps:6/799(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPR +KVT + IG+Y +LSPQ VL+SEKLT IHPLAEQV ++THSGR GRY Sbjct 534 GVVETPRNALKVTPQERDQLIGAYLILSPQTVLKSEKLTPIHPLAEQVTIMTHSGRSGRY 593 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 V+ Y G+V+VP G AIPV +FQALSESAT+VYNEREF+NR LHHIA +G ALNTDEE Y Sbjct 594 PVDRYDGRVLVPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEENY 653 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 V+ E EY++D+DK+ CVK+E SGL L G+L++PPFHEFAYE L+ RPA P+Q Sbjct 654 EKVRAERAEAEYVFDVDKRTCVKREDASGLVLVGDLINPPFHEFAYEGLKIRPATPFQTT 713 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 IGV+GVPGSGKS IIKS VT +DLV S KKENC EI+ DVKK +GLDV ARTVDS+LLN Sbjct 714 VIGVFGVPGSGKSAIIKSVVTTRDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSILLN 773 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GC+ VE LY+DEAFACH+GTL ALIA+++P K +LCGDPKQCGFFN+M LKV+FNH+I Sbjct 774 GCRRGVENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQCGFFNLMQLKVNFNHDI 833 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CTQV HKSISRRCT +T++VSTL Y +MRTTN + I+IDTTG+TK K D++LTCF Sbjct 834 CTQVLHKSISRRCTLPITAIVSTLHYQGKMRTTNLCSAPIQIDTTGTTKPAKGDIVLTCF 893 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 R WVKQLQIDY+G+E+MTAAASQGLTRK VYAVR KVNENPLYAP+SEHVNVLLTRTE++ Sbjct 894 RXWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPSSEHVNVLLTRTENR 953 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 +VWKTL+GDPWIK LT GDF+AT+EEWQ EHD IM + E+ D FQNKA VCWA Sbjct 954 LVWKTLSGDPWIKVLTNIPKGDFSATLEEWQEEHDNIMNALRERSTAVDPFQNKAKVCWA 1013 Query 1015 KALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVP 1074 K LV VL+TAGI +T E+W+TV F+ED+A+S E+ LN++C +Y+G+DLDSGLFSA +V Sbjct 1014 KCLVQVLETAGIRMTAEEWDTVLAFREDRAYSPEVALNEICTKYYGVDLDSGLFSAQSVS 1073 Query 1075 LSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINL 1134 L NNHWDN P MYG N EV R+ +RYP L + +G ++ ++ ++ N+ Sbjct 1074 LYYENNHWDNRPGGRMYGFNREVARKFEQRYPFLRGKMDSGLQVNVPERKVQPFNAECNI 1133 Query 1135 VPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGE-KMNISGKAVDWLSETPDAT 1193 + +NRRLPHALVT + + KL G +L+V E + + K V W++ P + Sbjct 1134 LLLNRRLPHALVTSYQQCRGERVEWLLKKLPGYHLLLVSEYNLALPHKRVFWIAP-PHVS 1192 Query 1194 FRAR---LDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 R LDLG+P +YD+VFVN+ T+YR HHYQQC DH++KL ML + L PGG Sbjct 1193 GADRIYDLDLGLPLNAGRYDLVFVNIHTEYRTHHYQQCVDHSMKLQMLGGDSLHLLXPGG 1252 Query 1251 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 1310 + + YGYADR SE ++ A+AR+F RV +P TEV +F FD R ++ Sbjct 1253 SLLIRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFTNFDNGRRAVTLHQ 1312 Query 1311 LSSTLTNIYTGSGLHEAGC 1329 + L++++ +GLH AGC Sbjct 1313 ANQRLSSMFACNGLHTAGC 1331 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 538 to 1336 Score:954 bits(2467), Expect:0.0, Method:Compositional matrix adjust., Identities:462/800(58%), Positives:584/800(73%), Gaps:7/800(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPR +KVT+ + +G+Y VLSPQ VL+S KL +HPLAEQV +ITH+GR GRY Sbjct 538 GVVETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPVHPLAEQVKIITHNGRAGRY 597 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 V+ Y G+V++P G AIPV +FQALSESAT+VYNEREFVNR L+HIA HG +LNTDEE Y Sbjct 598 QVDGYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDEENY 657 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 V+ + EY++D+DKK CVK+E SGL L GEL +PPFHEFAYE L+ RP+APY+ Sbjct 658 EKVRAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPYKTT 717 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 +GV+GVPGSGKS IIKS VTK DLV S KKENC EI+ DVKK +GLD+ A+TVDS+LLN Sbjct 718 VVGVFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGLDIQAKTVDSILLN 777 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GC+ V+ LY+DEAFACH+GTL ALIA+++P+ K VLCGDPKQCGFFNMM LKV+FNH I Sbjct 778 GCRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFNHNI 837 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CT+V HKSISRRCT+ VT++VSTL Y +MRTTNP + I IDTTG TK K D++LTCF Sbjct 838 CTEVCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVLTCF 897 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQ+DY+G+E+MTAAASQGLTRK VYAVR KVNENPLYAP SEHVNVLLTRTED+ Sbjct 898 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRTEDR 957 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 +VWKTLAGDPWIK L+ G+FTAT+EEWQ EHD IM+ I P D FQNKANVCWA Sbjct 958 LVWKTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIMKVIEGPAAPVDAFQNKANVCWA 1017 Query 1015 KALVPVLKTAGIDLTTEQWNT-VDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 K+LVPVL TAGI LT E+W+T + FKED+A+S + LN++C +Y+G+DLDSGLFSAP V Sbjct 1018 KSLVPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFSAPKV 1077 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 L NNHWDN P MYG N +L R+ L TG+ + ++ N Sbjct 1078 SLYYENNHWDNRPGGRMYGFNAATAARLEARHTFLKGQWHTGKQAVIAERKIQPLSVLDN 1137 Query 1134 LVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGE-KMNISGKAVDWLSETPDA 1192 ++P+NRRLPHALV ++ S V+K++G VL+V E + + + V WLS + Sbjct 1138 VIPINRRLPHALVAEYKTVKGSRVEWLVNKVRGYHVLLVSEYNLALPRRRVTWLSPL-NV 1196 Query 1193 TFRAR---LDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPG 1249 T R L LG+P + ++D+VFVN+ T++R HHYQQC DHA+KL ML A L PG Sbjct 1197 TGADRCYDLSLGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQMLGGDALRLLKPG 1256 Query 1250 GTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPY 1309 G+ + YGYAD+ SE+++ +++R+F +RV +P TEV +F FD R + Sbjct 1257 GSLLMRAYGYADKISEAVVSSLSRKFSSARVLRPDCVTSNTEVFLLFSNFDNGKRPSTLH 1316 Query 1310 KLSSTLTNIYTGSGLHEAGC 1329 ++++ L+ +Y G +H AGC Sbjct 1317 QMNTKLSAVYAGEAMHTAGC 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 537 to 1334 Score:938 bits(2424), Expect:0.0, Method:Compositional matrix adjust., Identities:459/799(57%), Positives:573/799(71%), Gaps:6/799(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPR +KVT + +GSY VLSPQ VL+S KL +HPLAE V +ITH GR GRY Sbjct 537 GVVETPRNALKVTPQDRDTMVGSYLVLSPQTVLKSVKLQALHPLAESVKIITHKGRAGRY 596 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 V+ Y G+V++P G AIPV DFQALSESAT+VYNEREF+NR L+HIA HG ALNTDEE Y Sbjct 597 QVDAYDGRVLLPTGAAIPVPDFQALSESATMVYNEREFINRKLYHIAVHGAALNTDEEGY 656 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 V+ + EY+YD+D+KQCVK+E GL + G+L++PPFHEFAYE L+ RPAAPY+ Sbjct 657 EKVRAESTDAEYVYDVDRKQCVKREEAEGLVMIGDLINPPFHEFAYEGLKRRPAAPYKTT 716 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 +GV+GVPGSGKSGIIKS VT+ DLV S KKENC EI+ DVK+ + LD+ A+TVDSVLLN Sbjct 717 VVGVFGVPGSGKSGIIKSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSVLLN 776 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNHEI 834 G K V+ LY+DEAFACHAGTL ALIA +RP KK VLCGDPKQCGFFN+M L+V+FNH I Sbjct 777 GVKQTVDVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQCGFFNLMQLQVNFNHNI 836 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CT+V HKSISRRCT +T++VSTL Y+ RMRTTNP + + IDTTG TK +ED++LTCF Sbjct 837 CTEVDHKSISRRCTLPITAIVSTLHYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVLTCF 896 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQ+DY+G+E+MTAAASQGLTRK VYAVR KVNENPLYA +SEHVNVLLTRTE + Sbjct 897 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRTEGR 956 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 +VWKTL+GDPWIKTL+ G+FTAT+E+WQ EHD IMR I ++ P DVFQNKA VCWA Sbjct 957 LVWKTLSGDPWIKTLSNIPKGNFTATLEDWQREHDTIMRAITQEAAPLDVFQNKAKVCWA 1016 Query 1015 KALVPVLKTAGIDLTTEQWNTVDY-FKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 K LVPVL+TAGI L+ W+ + FKED+A+S E+ LN++C + +G+DLDSGLFSAP V Sbjct 1017 KCLVPVLETAGIKLSATDWSAIILAFKEDRAYSPEVALNEICTKIYGVDLDSGLFSAPRV 1076 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 L NHWDNSP MYG + E +L +++P +G+V T + D N Sbjct 1077 SLHYTTNHWDNSPGGRMYGFSVEAANRLEQQHPFYRGRWASGQVLVAERKT-QPIDVTCN 1135 Query 1134 LVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGE-KMNISGKAVDWLS--ETP 1190 L+P NRRLPH LVT++ V+K+ G VL+V E + + + V W++ Sbjct 1136 LIPFNRRLPHTLVTEYHPIKGERVEWLVNKIPGYHVLLVSEYNLILPRRKVTWIAPPTVT 1195 Query 1191 DATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 A LDLG+P +YD+VFVN+ T YR HHYQQC DHA+KL ML A L PGG Sbjct 1196 GADLTYDLDLGLPPNAGRYDLVFVNMHTPYRLHHYQQCVDHAMKLQMLGGDALYLLKPGG 1255 Query 1251 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 1310 + + Y YADR SE+++ A+AR+F R + TEV +F FD RT ++ Sbjct 1256 SLLLSTYAYADRTSEAVVTALARRFSSFRAVTVRCVTSNTEVFLLFTNFDNGRRTVTLHQ 1315 Query 1311 LSSTLTNIYTGSGLHEAGC 1329 + L++IY G+ L AGC Sbjct 1316 TNGKLSSIYAGTVLQAAGC 1334 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 536 to 1333 Score:937 bits(2421), Expect:0.0, Method:Compositional matrix adjust., Identities:452/799(57%), Positives:570/799(71%), Gaps:6/799(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPRG IKVT+ + +G Y VL+PQAVLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVE Y G+V+VP G AIP +DFQ+LSESAT+V+NEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 +V+ + E EY+YD+D+K+C K+E +GL L G+L PP+HEFAYE L+ RPA PY+ Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GC PVE LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTG TK + DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQIDY+GNE+MTAAASQGLTRK VYAVR KVNENPLYAPTSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTRTEGK 955 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 + WKTL+GDPWIK L GDF AT++EW+AEH +IM I D FQNKANVCWA Sbjct 956 LTWKTLSGDPWIKILQNPPKGDFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 1015 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 K LVP+L TAGI L+ QW+ V FKED+A+S E+ LN++C R +G+DLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 + +NHWDN P M+G N EV L ++YP + + T + ++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 1134 LVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVV-GEKMNISGKAVDWLSE--TP 1190 ++P NRRLPH+LV +H V+K+ G +L+V G + + K V W++ T Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKISGHHMLLVSGHNLILPTKRVTWVAPLGTR 1195 Query 1191 DATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 A + L+LG+P L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 1251 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 1310 + + YGYADR SE +I + R+F+ SR KP+ TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 1311 LSSTLTNIYTGSGLHEAGC 1329 +++ L +Y G AGC Sbjct 1316 MNNQLNAVYAGLATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 536 to 1333 Score:932 bits(2409), Expect:0.0, Method:Compositional matrix adjust., Identities:450/799(56%), Positives:570/799(71%), Gaps:6/799(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPRG IKVT+ + +G Y VL+PQAVLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GIVETPRGAIKVTAQPSDRVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVE Y G+V+VP G AIP +DFQ+LSESAT+V+NEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 +V+ + E EY+YD+D+K+C K+E +GL L G+L PP+HEFAYE L+ RPA PY+ Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GC PVE LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTG TK + DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQIDY+GNE+MTAAASQGLTRK VYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 ++WKTL+GDPWIK L G+F AT++EW+AEH +IM I D FQNKANVCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 1015 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 K LVP+L TAGI L+ QW+ V FKED+A+S E+ LN++C R +G+DLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 + +NHWDN P M+G N EV L ++YP + + T + ++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 1134 LVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVV-GEKMNISGKAVDWLSE--TP 1190 ++P NRRLPH+LV +H V+K+ G +L+V G + + K V W++ T Sbjct 1136 IIPANRRLPHSLVAEHHTVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 1191 DATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 A + L+LG+P L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 1251 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 1310 + + YGYADR SE +I + R+F+ SR KP+ TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 1311 LSSTLTNIYTGSGLHEAGC 1329 +++ L +Y G AGC Sbjct 1316 MNNQLNAVYAGLATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 536 to 1333 Score:931 bits(2405), Expect:0.0, Method:Compositional matrix adjust., Identities:450/799(56%), Positives:570/799(71%), Gaps:6/799(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPRG IKVT+ + +G Y VL+PQAVLRS+KL IH LAEQV THSGR GRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLGLIHALAEQVKTCTHSGRAGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVE Y G+V+VP G AIP +DFQ+LSESAT+V+NEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 +V+ + E EY+YD+D+K+C K+E +GL L G+L PP+HEFAYE L+ RPA PY+ Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GC PVE LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTG+TK + DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGTTKPEPGDLVLTCF 895 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQIDY+GNE+MTAAASQGLTRK VYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 ++WKTL+GDPWIK L G+F AT++EW+AEH +IM I D FQNKANVCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNYQMAFDTFQNKANVCWA 1015 Query 1015 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 K LVP+L TAGI L+ QW+ V FKED+A+S E+ LN++C R +G+DLDSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 + +NHWDN P M+G N EV L ++YP + + T + ++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 1134 LVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVV-GEKMNISGKAVDWLSE--TP 1190 ++P NRRLPH+LV +H V+K+ G +L+V G + + K V W++ T Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 1191 DATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 A + L+LG+P L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 1251 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 1310 + + YGYADR SE +I + R+F+ SR KP+ TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTTHV 1315 Query 1311 LSSTLTNIYTGSGLHEAGC 1329 +++ L +Y G AGC Sbjct 1316 MNNQLNAVYAGLATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 536 to 1333 Score:930 bits(2403), Expect:0.0, Method:Compositional matrix adjust., Identities:450/799(56%), Positives:568/799(71%), Gaps:6/799(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G +ETPRG IKVT+ + +G Y VLSPQ VLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVE Y G+V+VP G AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 +V+ E EY+YD+D+++C KKE +GL L G+L +PP+HEFAYE L+ RPA PY++ Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPYKIA 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + +GL+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSLLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTGSTK DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQIDY+G+E+MTAAASQGLTRK VYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 +VWKTL+GDPWIKTL G+F AT++EW+ EH +IM I D FQNKANVCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICSHQMTFDTFQNKANVCWA 1015 Query 1015 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 K+LVP+L+TAGI L QW+ + FKEDKA+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 + +NHWDN P M+G N E L R+YP + + T + +++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTN 1135 Query 1134 LVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVV-GEKMNISGKAVDWLSE--TP 1190 ++P NRRLPH+LV +H V+K+ G VL+V G + + K V W++ Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGCSLALPTKRVTWVAPLGVR 1195 Query 1191 DATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 A + L+LG+P L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 1251 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 1310 + + YGYADR SE +I + R+F+ SR KP TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 1315 Query 1311 LSSTLTNIYTGSGLHEAGC 1329 +++ L + G AGC Sbjct 1316 MNNQLNAAFVGQATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 536 to 1333 Score:927 bits(2396), Expect:0.0, Method:Compositional matrix adjust., Identities:448/799(56%), Positives:567/799(70%), Gaps:6/799(0%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G +ETPRG IKVT+ + +G Y VLSPQ VLRS+KL+ IH LAEQV THSGR GRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AVE Y G+++VP G AI +DFQ+LSESAT+VYNEREFVNR LHHIA HG ALNTDEE Y Sbjct 596 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 655 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 +V+ E EY+YD+D+++C KKE +GL L G+L +PP+HEFAYE LR RPA PY+ Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 715 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV + + L+++ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 775 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 GC PV+ LY+DEAFACH+GTL ALIA++RP+ K VLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 CTQV+HKSISRRCT VT++VS+L Y+ +MRTTN + I +DTTGSTK DL+LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQIDY+G+E+MTAAASQGLTRK VYAVR KVNENPLYA TSEHVNVLLTRTE K Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 +VWKTL+GDPWIKTL G+F AT++EW+ EH +IM I D FQNKANVCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 1015 Query 1015 KALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 K+LVP+L+TAGI L QW+ + FKED+A+S E+ LN++C R +G+DLDSGLFS P V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRIN 1133 + +NHWDN P M+G N E L R+YP T + + T + +++P N Sbjct 1076 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 1135 Query 1134 LVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVV-GEKMNISGKAVDWLSE--TP 1190 ++P NRRLPH+LV +H V+K+ G VL+V G + + K V W++ Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 1195 Query 1191 DATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGG 1250 A + L+LG+P L +YD+V +N+ T +R HHYQQC DHA+KL ML + L PGG Sbjct 1196 GADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGG 1255 Query 1251 TCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYK 1310 + + YGYADR SE ++ + R+F+ SR KP TE+ F+F FD R + Sbjct 1256 SLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHV 1315 Query 1311 LSSTLTNIYTGSGLHEAGC 1329 +++ L + G AGC Sbjct 1316 MNNQLNAAFVGQATR-AGC 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 534 to 1307 Score:921 bits(2381), Expect:0.0, Method:Compositional matrix adjust., Identities:461/776(59%), Positives:557/776(71%), Gaps:9/776(1%) Query 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 G VETPR IKV++ G+ IGSY +LSPQAVLRSEKL CIH LAEQV ++THSGR GRY Sbjct 534 GVVETPRNSIKVSTQIGDALIGSYLILSPQAVLRSEKLACIHDLAEQVKLVTHSGRSGRY 593 Query 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 AV+ Y G+V+VP G AI +Q FQALSESAT+VYNEREFVNR L HIA +G ALNTDEE Y Sbjct 594 AVDKYXGRVLVPTGVAIDIQSFQALSESATLVYNEREFVNRKLWHIAVYGAALNTDEEGY 653 Query 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 V E +Y++D+D+K C+KKE SG L GELV+PPFHEFAYE LRTRP+APY+V Sbjct 654 EKVPVERAESDYVFDVDQKMCLKKEQASGWVLCGELVNPPFHEFAYEGLRTRPSAPYKVH 713 Query 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 T+GVYGVPGSGKS IIK+ VT DLV+S KKENC EI+ DV K + L + A+TVDSVLLN Sbjct 714 TVGVYGVPGSGKSAIIKNTVTMSDLVLSGKKENCLEIMNDVLKHRALRITAKTVDSVLLN 773 Query 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEI 834 G KH LYIDEAF+CHAGTL A IAI+RPK K VLCGDPKQCGFFNMM LKV++NH+I Sbjct 774 GVKHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQCGFFNMMQLKVNYNHDI 833 Query 835 CTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCF 894 C++VFHKSISRRCT+ +T++VS L Y RMRTTNPR I IDTTG+TK K DLILTCF Sbjct 834 CSEVFHKSISRRCTQDITAIVSKLHYQDRMRTTNPRKGDIIIDTTGTTKPAKTDLILTCF 893 Query 895 RGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDK 954 RGWVKQLQ DY+GNE+MTAAASQGLTR SVYAVR KVNENPLYA TSEHVNVLLTRTE+K Sbjct 894 RGWVKQLQQDYRGNEVMTAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRTENK 953 Query 955 IVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWA 1014 +VWKTL+ DPWIKTLT G +TAT+ EW+AEH IM+ I P + F NK NVCWA Sbjct 954 LVWKTLSTDPWIKTLTNPPRGHYTATIAEWEAEHQGIMKAIQGYAPPVNTFMNKVNVCWA 1013 Query 1015 KALVPVLKTAGIDLTTEQWNT-VDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 K L PVL+TAGI L+ E W+ + F +D A+S E+ LN +C + +G DLD+GLFS P+V Sbjct 1014 KTLTPVLETAGISLSAEDWSELLPPFAQDVAYSPEVALNIICTKMYGFDLDTGLFSRPSV 1073 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPR-- 1131 P++ +HWDN MYG + + QL+RR+P L +G + +R PR Sbjct 1074 PMTYTKDHWDNRVGGKMYGFSQQAYDQLARRHPYLRGREKSG--MQIVVTEMRIQRPRSD 1131 Query 1132 INLVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGE-KMNISGKAVDWLSE-- 1188 N++P+NRRLPH+LV H + F + +G T+L+V E MN+ K + WL+ Sbjct 1132 ANIIPINRRLPHSLVATHEYRRAARAEEFFTTTRGYTMLLVSEYNMNLPNKKITWLAPIG 1191 Query 1189 TPDATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNP 1248 T A A L+LGIP L +D V VN+ T +R HHYQQCEDHA+KL ML A H+ P Sbjct 1192 TQGAHHTANLNLGIPPLLGSFDAVVVNMPTPFRNHHYQQCEDHAMKLQMLAGDALRHIKP 1251 Query 1249 GGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTR 1304 GG+ YGYADR SE ++ A+AR+FK RV +P TEV F FD R Sbjct 1252 GGSLWVKAYGYADRHSEHVVLALARKFKSFRVTQPSCVTSNTEVFLHFSIFDNGKR 1307 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 543 to 1341 Score:888 bits(2295), Expect:0.0, Method:Compositional matrix adjust., Identities:447/801(56%), Positives:559/801(69%), Gaps:18/801(2%) Query 538 VETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAV 597 VETPRG +++ + IG Y V+SP +VL++ KL HPLA+QV +ITHSGR GRYAV Sbjct 543 VETPRGHVRIIPQANDRMIGQYIVVSPTSVLKNAKLAPAHPLADQVKIITHSGRAGRYAV 602 Query 598 EPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYRV 657 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE Y+V Sbjct 603 EPYDAKVLMPAGSAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 662 Query 658 VKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 717 K E EY++D+DKK+CVKKE SGL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 663 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 722 Query 718 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777 GV G PGSGKS IIKS VT +DLV S KKENC EI DV +++G+ + ++TVDSV+LNGC Sbjct 723 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 782 Query 778 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 833 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDPKQCGFFNMM LKVHFNH + Sbjct 783 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQCGFFNMMQLKVHFNHPERD 842 Query 834 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTC 893 ICT+ F+K ISRRCT+ VT++VSTL YD +M+TTNP IEID TG+TK K D+ILTC Sbjct 843 ICTKTFYKFISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 902 Query 894 FRGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTED 953 FRGWVKQLQIDY G+E+MTAAASQGLTRK VYAVR KVNEN LYA TSEHVNVLLTRTED Sbjct 903 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLLTRTED 962 Query 954 KIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCW 1013 ++VWKTL GDPWIK LT G+F AT+E+W+AEH I+ I T+ F K NVCW Sbjct 963 RLVWKTLQGDPWIKQLTNVPKGNFQATIEDWEAEHKGIIAAINSPAPRTNPFSCKTNVCW 1022 Query 1014 AKALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPT 1072 AKAL P+L TAGI LT QW+ + F +DK HSA L+ +C+++FG+DL SGLFS + Sbjct 1023 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 1082 Query 1073 VPLSIRN-------NHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTL 1125 +PL+ HWDNSP YG +H V +LSRR+P A G D+ TG Sbjct 1083 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAVAAELSRRFPVFQLA-GKGTQLDLQTGRT 1141 Query 1126 RNYDPRINLVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVG-EKMNISGKAVD 1184 R + NLVPVNR LPHALV +H + P F+++ K +VLVV EK+ K ++ Sbjct 1142 RVISAQHNLVPVNRNLPHALVPEHKEKQPGPVEKFLNQFKHHSVLVVSEEKIEAPHKRIE 1201 Query 1185 WLSE--TPDATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKA 1242 W++ A L G P + +YD+VF+N+ T+YR HH+QQCEDHA L L++ A Sbjct 1202 WIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 1260 Query 1243 CLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDR- 1301 LNPGGT V YGYADR SE ++ A+AR+F +P+ TE+ +F D Sbjct 1261 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECVSSNTEMYLIFRQLDNS 1320 Query 1302 KTRTHNPYKLSSTLTNIYTGS 1322 +TR P+ L+ ++++Y G+ Sbjct 1321 RTRQFTPHHLNCVISSVYEGT 1341 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 543 to 1341 Score:882 bits(2278), Expect:0.0, Method:Compositional matrix adjust., Identities:443/801(55%), Positives:556/801(69%), Gaps:18/801(2%) Query 538 VETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAV 597 VETPRG +++ + IG Y V+SP +VL++ KL HPLA+QV +ITHSGR GRYAV Sbjct 543 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 602 Query 598 EPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYRV 657 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE Y+V Sbjct 603 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 662 Query 658 VKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 717 K E EY++D+DKK+CVKKE SGL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 663 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 722 Query 718 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777 GV G PGSGKS IIKS VT +DLV S KKENC EI DV +++G+ + ++TVDSV+LNGC Sbjct 723 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 782 Query 778 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 833 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDP QCGFFNMM LKVHFNH + Sbjct 783 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 842 Query 834 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTC 893 ICT+ F+K ISRRCT+ VT++VSTL YD +M+TTNP IEID TG+TK K D+ILTC Sbjct 843 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 902 Query 894 FRGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTED 953 FRGWVKQLQIDY G+E+MTAAASQGLTRK VYAVR KVNENPLYA TSEHVNVLLTRTED Sbjct 903 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 962 Query 954 KIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCW 1013 ++VWKTL GDPWIK T G+F AT+E+W+AEH I+ I + F K NVCW Sbjct 963 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 1022 Query 1014 AKALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPT 1072 AKAL P+L TAGI LT QW+ + F +DK HSA L+ +C+++FG+DL SGLFS + Sbjct 1023 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 1082 Query 1073 VPLSIRN-------NHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTL 1125 +PL+ HWDNSP YG +H + +LSRR+P A G D+ TG Sbjct 1083 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLA-GKGTQLDLQTGRT 1141 Query 1126 RNYDPRINLVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVG-EKMNISGKAVD 1184 R + NLVPVNR LPHALV ++ + P F+++ K +VLVV EK+ K ++ Sbjct 1142 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 1201 Query 1185 WLSE--TPDATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKA 1242 W++ A L G P + +YD+VF+N+ T+YR HH+QQCEDHA L L++ A Sbjct 1202 WIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 1260 Query 1243 CLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDR- 1301 LNPGGT V YGYADR SE ++ A+AR+F +P TE+ +F D Sbjct 1261 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 1320 Query 1302 KTRTHNPYKLSSTLTNIYTGS 1322 +TR P+ L+ ++++Y G+ Sbjct 1321 RTRQFTPHHLNCVISSVYEGT 1341 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 542 to 1344 Score:815 bits(2104), Expect:0.0, Method:Compositional matrix adjust., Identities:423/806(52%), Positives:539/806(66%), Gaps:23/806(2%) Query 538 VETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAV 597 VETPRG IK+ G+ +IGSY V+SP AVLR+++L IH LAEQV +ITH GR GRY+V Sbjct 542 VETPRGKIKIIPQEGDVRIGSYTVISPAAVLRNQQLEPIHELAEQVKIITHGGRTGRYSV 601 Query 598 EPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYRV 657 EPY KV++P G + Q F ALSESAT+VYNEREF+NR LHHIAT G A NT+EE Y+V Sbjct 602 EPYDAKVLLPTGCPMSWQHFAALSESATLVYNEREFLNRKLHHIATKGAAKNTEEEQYKV 661 Query 658 VKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 717 K + + EY+YD+D ++CVK+E GL L GEL +PP+HE AYE LRTRPAAPY + T+ Sbjct 662 CKAKDTDHEYVYDVDARKCVKREHAQGLVLVGELTNPPYHELAYEGLRTRPAAPYHIETL 721 Query 718 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777 GV G PGSGKS IIKS VT KDLV S KKENC EI DV+KM+G+ + RTVDSVLLNG Sbjct 722 GVIGTPGSGKSAIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSVLLNGW 781 Query 778 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 833 K V+ LY+DEAFACHAGTL ALIAI++P +K VLCGDPKQ FFN+M LKV+FN+ + Sbjct 782 KKAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFFNLMQLKVNFNNPERD 841 Query 834 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTC 893 +CT +K ISRRCT+ VT++VSTL YD +MRTTNP IEID GSTK KK D++LTC Sbjct 842 LCTSTHYKYISRRCTQPVTAIVSTLHYDGKMRTTNPCKRAIEIDVNGSTKPKKGDIVLTC 901 Query 894 FRGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTED 953 FRGWVKQ QIDY G AASQGLTR+ VYAVR KVNENPLYA SEHVNVLLTRTED Sbjct 902 FRGWVKQGQIDYPGPGGHDRAASQGLTRRGVYAVRQKVNENPLYAEKSEHVNVLLTRTED 961 Query 954 KIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCW 1013 +IVWKTL GDPWIK LT G+FTAT+EEWQAEH+ IM+ I +D F +K N CW Sbjct 962 RIVWKTLQGDPWIKYLTNVPKGNFTATLEEWQAEHEDIMKAINSTSTVSDPFASKVNTCW 1021 Query 1014 AKALVPVLKTAGIDLTTEQW-NTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPT 1072 AKA++P+L+TAGI+LT EQW + F+ D+ +S L+ +C + FG+DL SG+FS P Sbjct 1022 AKAIIPILRTAGIELTFEQWEDLFPQFRNDQPYSVMYALDVICTKMFGMDLSSGIFSRPE 1081 Query 1073 VPLSIR-------NNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTL 1125 +PL+ HWDNSP +G N V+ ++YP RA ++ + G + Sbjct 1082 IPLTFHPADVGRVRAHWDNSPGGQKFGYNKAVI-PTCKKYPVYLRAGKGDQILPI-YGRV 1139 Query 1126 RNYDPRINLVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVG-EKMNISGKAVD 1184 R NLVP+NR LPH+L + F+++L G ++L+V E K + Sbjct 1140 SVPSARNNLVPLNRNLPHSLTASLQKKEAAPLHKFLNQLPGHSMLLVSKETCYCVSKRIT 1199 Query 1185 WLSE--TPDATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKA 1242 W++ A L G P L +YD+V VN+ YR+HHYQQCE+HA + L + A Sbjct 1200 WVAPLGVRGADHNHDLHFGFP-PLSRYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSA 1258 Query 1243 CLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDR- 1301 L PGGT YG+AD SE ++ ++AR+F + +P ++ TE+ FVF D Sbjct 1259 LNCLKPGGTLALKAYGFADSNSEDVVLSLARKFVRASAVRPSCTQFNTEMFFVFRQLDND 1318 Query 1302 KTRTHNPYKLSSTLTNIY----TGSG 1323 + R + L+ ++NI+ GSG Sbjct 1319 RERQFTQHHLNLAVSNIFDNYKDGSG 1344 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 567 to 1390 Score:645 bits(1664), Expect:0.0, Method:Compositional matrix adjust., Identities:361/827(44%), Positives:484/827(58%), Gaps:48/827(5%) Query 538 VETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLT-CIHPLAEQVIVITHSGRKGRYA 596 ++ RG +KV + G++ +G Y VLSP VLR+ KL + PLAE+V+ H GR GRYA Sbjct 567 IDCQRGTVKVITAFGDNMMGEYLVLSPVTVLRTRKLAILLGPLAEEVMQYVHKGRTGRYA 626 Query 597 VEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYR 656 +E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE YY+ Sbjct 627 IEKNNLKVLIPTGVSLKTDHFQALAESATLTYNDYLFTCRTLDQLATRGSARNTDEVYYK 686 Query 657 VVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPT 716 +V ++ EY+Y++ KQCVKKE +G L G++ +PP+H+FAYE+LR RPA + V T Sbjct 687 LVDAAKARDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAYEALRKRPAHTHDVHT 746 Query 717 IGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNG 776 IG+YGVPG+GK+ II + VT +DLV S KKENC +I R V + +GL + ARTVDS+ Sbjct 747 IGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLFYGA 806 Query 777 CKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 + V TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+NHEI Sbjct 807 YRGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEIS 866 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 +V K+ISRRCT ++T++VS L Y+ RM+TTNP + IDTTGSTK KE L+LTCFR Sbjct 867 DRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCFR 926 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVK L+ Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT D++ Sbjct 927 GWVKDLKFLYPHNELMTAAASQGLTREKVYAVRCRVTTNPLYEPTSEHITVLLTRTNDEL 986 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVF-QNKANVCWA 1014 VWKTL DP I L+ GD++ATME+W+ EH+ I+ + E P F K N CWA Sbjct 987 VWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRNTCWA 1046 Query 1015 KALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 VL AG+ +T E +N + F+EDK HSA L+ + +GLD SG+ S Sbjct 1047 VTSSRVLHEAGVQITPEDYNRIFPAFREDKPHSALAALDAVATLVWGLDTSSGILSGKGS 1106 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGR---VYDMNTGTLRNYDP 1130 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L DP Sbjct 1107 FMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPLDP 1166 Query 1131 RINLVPVNRRLPHALVTQHADHPPS-----------------------DFSAFVSKLKGR 1167 VP+NR +PH LV A P F+ ++ Sbjct 1167 ARVQVPINRIVPHVLVDTSAAAKPGFLENRLTVDRWDQVHSFKTRAAVKFAELTKRVSYN 1226 Query 1168 TVLVVGEKMN-------ISGKAVDWLSETPDATFRARL----DLGIP-TELPKYDIVFVN 1215 +VL +G GK V +SE D R + D+ P L +D+VF + Sbjct 1227 SVLDLGAAPGGVTDYCVKKGKTVTSVSEQWDTKPRGAVVVTADINGPLNNLGIFDLVFCD 1286 Query 1216 VRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAVARQF 1275 RYHHY QCEDHA+ + K GG + YG ADR +E + AR F Sbjct 1287 AAGPRRYHHYAQCEDHAVLFTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGTARYF 1346 Query 1276 KFSRVCKPKVSK-EETEVLFVFIGFDRKTRTH--NPYKLSSTLTNIY 1319 + V KP S+ EV F F G + R H + L LT+IY Sbjct 1347 RSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIY 1390 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 566 to 1389 Score:640 bits(1652), Expect:0.0, Method:Compositional matrix adjust., Identities:363/827(44%), Positives:489/827(59%), Gaps:48/827(5%) Query 538 VETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCI-HPLAEQVIVITHSGRKGRYA 596 ++ RG +KV + G++ +G Y VLSP VLR+ KL + PLAE+V+ H GR GRYA Sbjct 566 IDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRTGRYA 625 Query 597 VEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYR 656 +E + KV++P G ++ FQAL+ESAT+ YN+ F R L +AT G A NTDE YY+ Sbjct 626 IEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDEVYYK 685 Query 657 VVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPT 716 +V ++ + EY+Y++ KQCVKKE +G L G++ +PP+H+FA+E+LR RPA + V T Sbjct 686 LVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTHDVHT 745 Query 717 IGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNG 776 IG+YGVPG+GK+ II + VT +DLV S KKENC +I R V + +GL + ARTVDS+L Sbjct 746 IGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLLYGA 805 Query 777 CKHPVETLYIDEAFACHAGTLRALIAIIRPK-KAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 + V+TLY+DEA+ACH+GTL ALIA +RP K VLCGDPKQ G N + +++H+NHEI Sbjct 806 YRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEIS 865 Query 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 +V K+ISRRCT ++T++VS L Y+ RM+TTNP + IDTTGSTK KE L+LTCFR Sbjct 866 DRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCFR 925 Query 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 GWVK L+I Y NE+MTAAASQGLTR+ VYAVR +V NPLY PTSEH+ VLLTRT D++ Sbjct 926 GWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRTNDEL 985 Query 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVF-QNKANVCWA 1014 VWKTL DP I L+ GD++ATME+W+ EH+ I+ + E P F K N CWA Sbjct 986 VWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRNTCWA 1045 Query 1015 KALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTV 1073 VL AG+ +T E +N + F+EDK HSA L+ + +GLD SG+ S Sbjct 1046 VTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILSGKGS 1105 Query 1074 PLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGR---VYDMNTGTLRNYDP 1130 + + N+HW NS YGLN + + P++ +A+ R YD+ TG L DP Sbjct 1106 FMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPMDP 1165 Query 1131 RINLVPVNRRLPHALVTQHADHPPS-----------------------DFSAFVSKLKGR 1167 VP+NR +PH LV A P F+ ++ Sbjct 1166 GRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKRVSYN 1225 Query 1168 TVLVVGEKMN-------ISGKAVDWLSETPDATFRARL----DLGIP-TELPKYDIVFVN 1215 +VL +G GK V +SE D+ R + D+ P L +D+VF + Sbjct 1226 SVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDLVFCD 1285 Query 1216 VRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAVARQF 1275 RYHHY QCEDHA + + K GG + YG ADR +E + AR F Sbjct 1286 AAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYF 1345 Query 1276 KFSRVCKPKVSK-EETEVLFVFIGFDRKTRTH--NPYKLSSTLTNIY 1319 K V KP S+ EV F F G + R H + L LT+IY Sbjct 1346 KSVSVEKPVSSRITNVEVFFKFSG---RCRPHARSIAHLGPQLTDIY 1389 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 824 to 1089 Score:79.0 bits(193), Expect:5e-15, Method:Compositional matrix adjust., Identities:75/273(27%), Positives:121/273(44%), Gaps:31/273(11%) Query 719 VYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKK---MKGLDVNARTVDSVLL 774 V GVPG GK+ I+++ +DL++ KE C II+ K ++ N RTVDS L+ Sbjct 824 VDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATRDNVRTVDSFLM 883 Query 775 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEI 834 + L+IDE H G + L+A+ ++A++ GD +Q F N + + H Sbjct 884 HLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFINRVANFPYPKHFR 943 Query 835 CTQVFHKSISR---RCTKSVTSVVSTLFYDKRMRTT-----------------NPRDSKI 874 T ++H+ + R RC VT +++ + K + T NP+ + Sbjct 944 YTCLYHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAEVVRGKGVFNPKSKPL 1003 Query 875 EIDTTGSTKSKKEDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNEN 934 + T+S K +L RG+ + EI T QG T + V VR Sbjct 1004 KGKIITFTQSDKAELKE---RGYEEVSTF----GEINTVHEIQGETFEDVSVVRLTPTPL 1056 Query 935 PLYAPTSEHVNVLLTRTEDKIVWKTLAGDPWIK 967 L + +S HV V LTR + ++ DP +K Sbjct 1057 ELISKSSPHVLVALTRHTKSFKYYSVVLDPLVK 1089 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 809 to 1089 Score:75.9 bits(185), Expect:4e-14, Method:Compositional matrix adjust., Identities:77/288(27%), Positives:121/288(42%), Gaps:31/288(10%) Query 704 LRTRPAAPYQVPTIGVYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKK---M 759 L+ P V GVPG GK+ I+++ +DL++ KE C II+ K + Sbjct 809 LKDGEPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHV 868 Query 760 KGLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCG 819 + N RTVDS L++ L+IDE H G + LIA+ ++A++ GD +Q Sbjct 869 RATKDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIP 928 Query 820 FFNMMCLKVHFNHEICTQVFHKSISR---RCTKSVTSVVSTLFYDKRMRTT--------- 867 F N + + H H+ + R RC VT +++ + K + T Sbjct 929 FINRVANFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSKYDGKVLCTNDVIRSVDAE 988 Query 868 --------NPRDSKIEIDTTGSTKSKKEDLILTCFRGWVKQLQIDYKGNEIMTAAASQGL 919 NP+ ++ T+S K +L RG+ + EI T QG Sbjct 989 VVRGKGVFNPKSKPLKGKIITFTQSDKAELKE---RGYEEVSTF----GEINTVHEIQGE 1041 Query 920 TRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKIVWKTLAGDPWIK 967 T + V VR L + +S HV V LTR + ++ DP +K Sbjct 1042 TFEDVSVVRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVK 1089 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 823 to 1117 Score:63.5 bits(153), Expect:2e-10, Method:Compositional matrix adjust., Identities:74/298(25%), Positives:127/298(42%), Gaps:24/298(8%) Query 717 IGVYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKK---MKGLDVNARTVDSV 772 I V GVPG GK+ II+ +DL++ KE IIR + ++ N RTVDS Sbjct 823 ILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRADKDNVRTVDSF 882 Query 773 LLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKVH 829 L++ + + L+IDE H G + L+ + + A + GD KQ F + H Sbjct 883 LMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPFICRVANFPYPAH 942 Query 830 FNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKK--- 886 F + + + ++ RC VT ++ YD + T+ + ++ + + Sbjct 943 FAKLVADEKEVRRVTLRCPADVTYFLNKK-YDGAVMCTSAVERSVKAEVVRGKGALNPIT 1001 Query 887 ---EDLILTCFRGWVKQLQIDYKG-NEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSE 942 E ILT + + ++ KG ++ T QG T + VR + + S Sbjct 1002 LPLEGKILTFTQA--DKFELLEKGYKDVNTVHEVQGETYEKTAIVRLTSTPLEIISSASP 1059 Query 943 HVNVLLTRTEDKIVWKTLAGDPWIKTLT-AKYPGDFTATME------EWQAEHDAIMR 993 HV V LTR + T+ DP + ++ + +F M ++Q + DA+ R Sbjct 1060 HVLVALTRHTTCCKYYTVVLDPMVNVISEMEKLSNFLLDMYRVEAGVQYQLQIDAVFR 1117 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2251 to 2520 Score:60.1 bits(144), Expect:3e-09, Method:Compositional matrix adjust., Identities:68/272(25%), Positives:113/272(41%), Gaps:34/272(12%) Query 723 PGSGKSGIIKSAVTK-----KDLVVSAKKENCAEIIRDVKKM------KGLDVNAR--TV 769 PG GK+ + + L+++A K + EI+ V ++ L R T+ Sbjct 2251 PGGGKTTTLIKVFCETFSKVNSLILTANKSSREEILAKVNRIVLDEGDTPLQTRDRILTI 2310 Query 770 DSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVH 829 DS L+N + LY+DE F HAG A I + A+L GD +Q + L Sbjct 2311 DSYLMNNRGLTCKVLYLDECFMVHAGAAVACIEFTKCDSAILFGDSRQIRYGRCSELDTA 2370 Query 830 FNHEICTQVFHKS-----ISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKI------EIDT 878 ++ V +S +S RC V + +ST FY K + TTN + EI++ Sbjct 2371 VLSDLNRFVDDESRVYGEVSYRCPWDVCAWLST-FYPKTVATTNLVSAGQSSMQVREIES 2429 Query 879 TGSTKSKKEDLILTCFRGWVKQLQIDYKGNE--------IMTAAASQGLTRKSVYAVRYK 930 + E + LT + K L + ++T +QG T + V VR K Sbjct 2430 VDDVEYSSEFVYLTMLQSEKKDLLKSFGKRSRSSVEKPTVLTVHEAQGETYRKVNLVRTK 2489 Query 931 VNENPLYAPTSEHVNVLLTRTEDKIVWKTLAG 962 E+ + + H+ V L+R + + + L+ Sbjct 2490 FQEDDPFR-SENHITVALSRHVESLTYSVLSS 2520 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 815 to 1090 Score:58.9 bits(141), Expect:6e-09, Method:Compositional matrix adjust., Identities:72/280(26%), Positives:118/280(42%), Gaps:21/280(7%) Query 707 RPAAPYQVPT---IGVYGVPGSGK-SGIIKSAVTKKDLVVSAKKENCAEIIRDVKK---M 759 R P++ PT + V GVPG GK G + +DL++ K+ A I R + Sbjct 815 RDGEPHE-PTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSGLI 873 Query 760 KGLDVNARTVDSVLLNGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCG 819 + N RTVDS+L++ + L+IDE H G + L+ I A + GD +Q Sbjct 874 RATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIP 933 Query 820 FFNMMC---LKVHFNHEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEI 876 F N + HF +V + + RC V + + Y+ + TT+ + Sbjct 934 FINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQSK-YEGAVTTTSTVQRSVSS 992 Query 877 DTTG------STKSKKEDLILTCFRGWVKQLQIDYKG-NEIMTAAASQGLTRKSVYAVRY 929 + G S + I+T + + +++ KG + T QG T + V VR Sbjct 993 EMIGGKGVLNSVSKPLKGKIVTFTQA--DKFELEEKGYKNVNTVHEIQGETFEDVSLVRL 1050 Query 930 KVNENPLYAPTSEHVNVLLTRTEDKIVWKTLAGDPWIKTL 969 L + +S HV V LTR + T+ DP ++ + Sbjct 1051 TATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQII 1090 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 821 to 1083 Score:58.2 bits(139), Expect:1e-08, Method:Compositional matrix adjust., Identities:67/265(25%), Positives:109/265(41%), Gaps:15/265(5%) Query 719 VYGVPGSGKSG-IIKSAVTKKDLVVSAKKENCAEIIRDVKK---MKGLDVNARTVDSVLL 774 V GVPG GK+ I++ +DLV+ KE IIR + + N RTVDS L+ Sbjct 821 VDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGITRADKDNVRTVDSFLM 880 Query 775 NGCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMC---LKVHFN 831 + K + L+IDE H G + L+ + A + D +Q F + HF Sbjct 881 HPPKRVFKRLFIDEGLMLHTGCVNFLMLLSHCDVAYVYVDTQQIPFICRVANFPYPAHFA 940 Query 832 HEICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKK----- 886 + + + ++ RC VT ++ YD + T+ + + + + Sbjct 941 KLVVDEKEDRRVTLRCPADVTYFLNQK-YDGSVLCTSSVERSVSAEVVRGKGALNPITLP 999 Query 887 -EDLILTCFRGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVN 945 E ILT F K +D ++ T QG T + VR + + S HV Sbjct 1000 LEGKILT-FTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRASPHVL 1058 Query 946 VLLTRTEDKIVWKTLAGDPWIKTLT 970 V LTR + + T+ DP + ++ Sbjct 1059 VALTRHTTRCKYYTVVLDPMVNVIS 1083