########################################
# Program: needle
# Rundate: Tue 18 Mar 2008 18:46:20
# Commandline: needle
#    [-asequence] AMPA_PSEA7.fasta
#    [-bsequence] AMPA_ECOLI.fasta
#    [-outfile] ECOLI_PSE7.needle
# Align_format: srspair
# Report_file: ECOLI_PSE7.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: AMPA_PSEA7
# 2: AMPA_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity:     276/504 (54.8%)
# Similarity:   365/504 (72.4%)
# Gaps:          10/504 ( 2.0%)
# Score: 1393.0
# 
#
#=======================================

AMPA_PSEA7         1 MEFLVKSVRPETLKTATLVLAVGEGRKLGASAKAVDDATGGAIGAVLKRG     50
                     |||.|||..||..::|.:|:.|.|.|:|...|:.:|..:.|.|.|:|:||
AMPA_ECOLI         1 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRG     50

AMPA_PSEA7        51 DLAGKVGQTLLLQNLPNLKAERVLLVGAGKERELGDRQYRKLASAVLSTL    100
                     :|.||.||||||.::||:.:||:||:|.||||||.:|||:::....::||
AMPA_ECOLI        51 ELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTL    100

AMPA_PSEA7       101 KGLAGADAVLALGDLAVKGRDAHAKARLLVETLADGLYVFDRYKSQKAEP    150
                     ......:||..|.:|.||||:.:.|.|..|||..:.||.||:.|:.|:||
AMPA_ECOLI       101 NDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEP    150

AMPA_PSEA7       151 LK-LKKLTL-LADKADSAAVEQGSKEAQAIANGMALTRDLGNLPPNVCHP    198
                     .: |:|:.. :..:.:..:.|:..:...|||.|:...:||||:|||:|:.
AMPA_ECOLI       151 RRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNA    200

AMPA_PSEA7       199 TFLGEQAKALAKEF-KGLKVEVHDEQKLRELGMGSFLAVAQGSEQPPRLI    247
                     .:|..||:.||..: |.:...|..||:::||||.|:|||.|||:....:.
AMPA_ECOLI       201 AYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMS    250

AMPA_PSEA7       248 VLQYNG-AKKDQAPHVLVGKGITFDTGGISLKPGLGMDEMKFDMCGAASV    296
                     |::|.| |.:|..|.||||||:|||:||||:||..||||||:||||||:|
AMPA_ECOLI       251 VIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAV    300

AMPA_PSEA7       297 FGTFRAVLELQLPINLVGLLACAENMPSGGATRPGDIVTTMSGQTVEILN    346
                     :|..|.|.|||||||::|:||..||||.|.|.||||::|||||||||:||
AMPA_ECOLI       301 YGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLN    350

AMPA_PSEA7       347 TDAEGRLVLCDALTYAERFKPQSVVDIATLTGACIVALGSNTSGLMGNNE    396
                     |||||||||||.|||.|||:|::|:|:|||||||::|||.:.:|||.|:.
AMPA_ECOLI       351 TDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHN    400

AMPA_PSEA7       397 ALVRQLLKAGEFADDRAWQLPLFDEYQEQLDSPFADIANIGGPKAGTITA    446
                     .|..:|:.|.|.:.||||:|||.|||||||:|.|||:|||||...|.|||
AMPA_ECOLI       401 PLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITA    450

AMPA_PSEA7       447 GCFLSRFAKKYHWAHLDIAGTAWISGGKDKGATGRPVPLLTQYLLERAK-    495
                     |||||||.:||:|||||||||||.| ||.||||||||.||.|:||.||. 
AMPA_ECOLI       451 GCFLSRFTRKYNWAHLDIAGTAWRS-GKAKGATGRPVALLAQFLLNRAGF    499

AMPA_PSEA7       495 ----    495
                         
AMPA_ECOLI       500 NGEE    503


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