######################################## # Program: needle # Rundate: Tue 18 Mar 2008 18:49:32 # Commandline: needle # [-asequence] AMPA_PSEA7_gene.fasta # [-bsequence] AMPA_ECOLI_gene.fasta # [-outfile] ECOLI_PSEA7gene.needle # Align_format: srspair # Report_file: ECOLI_PSEA7gene.needle ######################################## #======================================= # # Aligned_sequences: 2 # 1: AMPA_PSEA7 # 2: AMPA_ECOLI # Matrix: EDNAFULL # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 1686 # Identity: 994/1686 (59.0%) # Similarity: 994/1686 (59.0%) # Gaps: 372/1686 (22.1%) # Score: 2621.5 # # #======================================= AMPA_PSEA7 1 atggaattccttgttaaaagc-gtacgcccggaaaccctgaaaaccgcca 49 |||||.||...|||.|||||| ||| ||||||| |||| || AMPA_ECOLI 1 atggagtttagtgtaaaaagcggta-gcccgga------gaaa-----ca 38 AMPA_PSEA7 50 ccctggtgc-----tcgccgtaggcgaaggc--cgcaagctcggcgc--- 89 .|...|||| |||.|||.||| |.| || ||.|.||.||| AMPA_ECOLI 39 gcggagtgcctgcatcgtcgtgggc---gtcttcg-aaccacgtcgcctt 84 AMPA_PSEA7 90 ---------------cagcgccaaggcggtcgacgacgccaccggcggcg 124 |||| ||||..|...||.||..||.. AMPA_ECOLI 85 tctccgattgcagaacagc----------tcgataaaatcagcgatgggt 124 AMPA_PSEA7 125 ccatcagcgcagtgctcaag-cgtggcgacctggccggcaaggtcggcca 173 .|||||||||..|||| |.| ||.|||||.||||..||.||....||.|| AMPA_ECOLI 125 acatcagcgccctgct-acgtcggggcgaactggaaggaaaaccggggca 173 AMPA_PSEA7 174 gaccctgctcctgcagagcc---tgcccaatctcaaggccgagcgcgtgc 220 |||..||.|.||||| || |.||.|||.|.....|||||||..|.| AMPA_ECOLI 174 gacattgttgctgca---ccatgttccgaatgtactttccgagcgaattc 220 AMPA_PSEA7 221 tgc----tggtcggcgccggcaaggagcgcgaactgggcgaccgccagta 266 |.| ||||.| ||||||.||.||.||.||||..||.||.||||| AMPA_ECOLI 221 tccttattggttg----cggcaaagaacgtgagctggatgagcgtcagta 266 AMPA_PSEA7 267 ccgcaagctgg------------cc-----tccgccg-----tgctgtcg 294 |||||.|| || |.|||.| |.||| AMPA_ECOLI 267 ---caagcaggttattcagaaaaccattaatacgctgaatgatactg--- 310 AMPA_PSEA7 295 accctcaagg---gcctggccggc--gccgatgccgcgctggccctcggc 339 .|||||.| || ||.|.|| .|.|| |.|.||||..| AMPA_ECOLI 311 --gctcaatggaagc--ggtctgctttctga--ctgagctgcac------ 348 AMPA_PSEA7 340 gatctcgcggtgaaaggccgcgatgcccacgcgaaggcgcgtc-tgctgg 388 ||.||||||||..|...|.||..|||.|.||||| .||| | AMPA_ECOLI 349 ---------gttaaaggccgtaacaactactggaaagtgcgtcaggct-g 388 AMPA_PSEA7 389 tggaaaccctggc-----cgatggcctgtac-gtgttcgatc-gct---- 427 |.||.|| ||| .||.| ||.||| || ||||||| ||| AMPA_ECOLI 389 tcgagac---ggcaaaagagacg--ctctacagt-ttcgatcagctgaaa 432 AMPA_PSEA7 428 ----acaagagccagaaagccgag----ccgctgaaactgaagaagctg- 468 |||||||| ||| |||.| |||||| |..||||.|.|| AMPA_ECOLI 433 acgaacaagagc--gaa--ccgcgtcgtccgctg---cgtaagatggtgt 475 AMPA_PSEA7 469 ---ac---cctgctcgccgacaaggccga-cagcgccgccgt---cgagc 508 || ||..|.|||||..|| |.|| ||||| || ||.|| AMPA_ECOLI 476 tcaacgtgccgacccgccgtgaa--ctgaccagcg-----gtgagcgcgc 518 AMPA_PSEA7 509 aaggcagcaaggaagctcaggccatcgccaatggcatggccctg-----a 553 .|..|||||.|| ||.|||.||.||| |||..| | AMPA_ECOLI 519 gatccagcacgg----tctggcgattgcc---------gccgggattaaa 555 AMPA_PSEA7 554 cccgc----gatctcggcaaccttccgccgaacgtctgccatccgacg-- 597 .|.|| |||||||||||..|.||||||||..||||..| ||.|| AMPA_ECOLI 556 gcagcaaaagatctcggcaatatgccgccgaatatctgtaa--cgccgct 603 AMPA_PSEA7 598 ttcctcg----gcgagcaggccaagggcctggc------------caagg 631 |.||||| .|.|||..|||| .||||| ||||. AMPA_ECOLI 604 tacctcgcttcacaagcgcgcca----gctggctgacagctacagcaaga 649 AMPA_PSEA7 632 a-gt--tcaagggcctgaaggtcgaggtcctcgacg------agaagaaa 672 | || |||...|| ||..|||.|| |||.|||| AMPA_ECOLI 650 atgtcatcacccgc------------gttatcggcgaacagcagatgaaa 687 AMPA_PSEA7 673 ctgcgcgagctgggcatgggctcgttc----ctcgccgtcgcccagg--- 715 ||||||||.||| |.||| ||.||.||||..|||| AMPA_ECOLI 688 ------gagctggggatg----cattcctatctggcggtcggtcagggtt 727 AMPA_PSEA7 716 -gcagcgaccagccgccg----cggctgatcgtcctgcaatacaacgg-- 758 ||| ..||.|..|||.| ||| ||||.| |.|||||.|| AMPA_ECOLI 728 cgca-aaacgaatcgctgatgtcgg-tgattg------agtacaaaggca 769 AMPA_PSEA7 759 -cgc----gaagaaggaccaggccccgca--cgtgctggtcggcaagggc 801 ||| |||||.| ||.||| || |||||||||.||.||.||. AMPA_ECOLI 770 acgcgtcggaagatg---cacgcc---caatcgtgctggtgggtaaaggt 813 AMPA_PSEA7 802 atcaccttcgacaccggcggcatcagcctcaagccgggcct-----gggc 846 .|.|||||||||.|||||||.|||....|||| |||| .||| AMPA_ECOLI 814 ttaaccttcgactccggcggtatctcgatcaa-----gccttcagaaggc 858 AMPA_PSEA7 847 atggacgagatgaagttcgacatgtgcggcgccgccagc-gtcttcggca 895 |||||.||||||||||.|||.||||||||.| ||.|||| ||.|.||||. AMPA_ECOLI 859 atggatgagatgaagtacgatatgtgcggtg-cggcagcggtttacggcg 907 AMPA_PSEA7 896 ccttccg------cgcggtgctcgaactgcagttgccgatcaacctggtc 939 ...|.|| |||||.|||..||| |||||||.|||.|..|| AMPA_ECOLI 908 tgatgcggatggtcgcggagctacaac------tgccgattaacgttatc 951 AMPA_PSEA7 940 ggcctgctggcctgcgccgagaacatgcccagcggcggagccacccgtcc 989 |||.||.||||..||..|||.||||||||..||||..|||||...||||| AMPA_ECOLI 952 ggcgtgttggcaggctgcgaaaacatgcctggcggacgagcctatcgtcc 1001 AMPA_PSEA7 990 gggcgacatcgtcaccaccatgagcgggcagaccgtcgagatcctcaaca 1039 ||||||..|..|.|||||||||..|||.||.|||||.||..|.||.|||| AMPA_ECOLI 1002 gggcgatgtgttaaccaccatgtccggtcaaaccgttgaagtgctgaaca 1051 AMPA_PSEA7 1040 ccgacgccgaagggcgcctggtgctgtgcgatgcactgacctacgccgag 1089 |||||||.|||||.||||||||.||||||||.|...|.||.||||..||| AMPA_ECOLI 1052 ccgacgctgaaggccgcctggtactgtgcgacgtgttaacttacgttgag 1101 AMPA_PSEA7 1090 cgcttcaagcctcagtcggtgatcgacatcgccaccctcaccggcgcctg 1139 ||.||..||||..|..|||||||.|||.|.||.||.||.|||||.||||| AMPA_ECOLI 1102 cgttttgagccggaagcggtgattgacgtggcgacgctgaccggtgcctg 1151 AMPA_PSEA7 1140 catcgtcgccctgggcagcaacacct--cgggccttatgggcaacaacga 1187 |.|..||||.||||| .||.||..| |.||.||.||||..|||.|..| AMPA_ECOLI 1152 cgtgatcgcgctggg--tcatcatattactggtctgatggcgaaccataa 1199 AMPA_PSEA7 1188 agcgctgg-tcaggcaactgctcaaggccggcgagttcg----------c 1226 ..|||||| .||.| ||||| |..|||| || | AMPA_ECOLI 1200 tccgctggcccatg-aactg---attgccg-------cgtctgaacaatc 1238 AMPA_PSEA7 1227 cgacgaccgcgcctggcaattgccgctgttcgacgaataccaggaacagc 1276 ||..||||||||.||||..||.||||||...|||||.||.||||||||.| AMPA_ECOLI 1239 cggtgaccgcgcatggcgcttaccgctgggtgacgagtatcaggaacaac 1288 AMPA_PSEA7 1277 tggacagccc--gttcgccgacatcgccaacatcggcgggccgaaggcc- 1323 ||| ||.|| .||.|||||.||.||.|||||.|||||.| |.|| AMPA_ECOLI 1289 tgg--agtccaattttgccgatatggcgaacattggcggtc----gtcct 1332 AMPA_PSEA7 1324 ---ggcaccatcaccgccggctgcttcctctcgcgcttcgccaagaaata 1370 ||..|.||.|||||.||.||||||||.||.|||||..||...||.|| AMPA_ECOLI 1333 ggtggggcgattaccgcaggttgcttcctgtcacgctttacccgtaagta 1382 AMPA_PSEA7 1371 ccactgggcgcacttggacatcgccggcaccgcctggatcagcg--gcgg 1418 |.|||||||||||.||||.||||||||.|||||||| ||| ..|| AMPA_ECOLI 1383 caactgggcgcacctggatatcgccggtaccgcctg-----gcgttctgg 1427 AMPA_PSEA7 1419 caaggacaaaggcgccaccggccgcccggttccgttgttgacccagtacc 1468 .||.|..||||||||||||||.||.|||||..|||||.||.|.||||.|| AMPA_ECOLI 1428 taaagcaaaaggcgccaccggtcgtccggtagcgttgctggcacagttcc 1477 AMPA_PSEA7 1469 t----------gctgg----aacgggccaagtga-- 1488 | ||||| ||| |||.|||.|. AMPA_ECOLI 1478 tgttaaaccgcgctgggtttaac-ggcgaagagtaa 1512 #--------------------------------------- #---------------------------------------