Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.3.0, (Release date: 6 PDT 20)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
DATABASE
pr_7_1.fasta
Database contains
1
sequences,
30119
residues
MOTIFS meme.txt (nucleotide)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 37 | GTTTGGAAACTCTTGTTAGATCTCATTAAATCTAAAC |
2 | 29 | GGTAACTATCGTTTACCGTCTAGTAAACC |
3 | 7 | CCACCCA |
Random model letter frequencies
(from non-redundant database):
A 0.282 C 0.222 G 0.229 T 0.267
Motif | Sequence Name | Start | End | p-value | q-value |
---|---|---|---|---|---|
1 | NC_019843.3 | 4455 | 4491 | 5.01e-06 | 0.101 |
1 | NC_019843.3 | 21047 | 21083 | 1.04e-05 | 0.105 |
1 | NC_019843.3 | 7561 | 7597 | 7.36e-05 | 0.367 |
1 | NC_019843.3 | 18879 | 18915 | 9.42e-05 | 0.367 |
1 | NC_019843.3 | 1517 | 1553 | 9.58e-05 | 0.367 |
Command line:
fimo --o pr7_1res --motif 1 --norc meme.txt pr_7_1.fasta
Settings:
output directory = pr7_1res | MEME file name = meme.txt | sequence file name = pr_7_1.fasta |
background file name = (null) | motif name = motif | allow clobber = false |
compute q-values = true | output p-threshold set = false | output q-threshold set = false |
text only = false | scan both strands = false | max sequence length = 250000000 |
output q-value threshold = 1 | output p-value threshold = 0.0001 | pseudocount = 0.1 |
verbosity = 2 | selected motif = 1 | = |
This information can be useful in the event you wish to report a problem with the FIMO software.