FIMO Results

FIMO - Motif search tool

FIMO version 4.3.0, (Release date: 6 PDT 20)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

DATABASE AND MOTIFS

        DATABASE 
        pr_7_2.fasta

        Database contains 
        1
        sequences,
        31249
        residues
      

        MOTIFS 
        meme.txt 
        (nucleotide)
        


MOTIF
WIDTH

              BEST POSSIBLE MATCH
            


1
37
GTTTGGAAACTCTTGTTAGATCTCATTAAATCTAAAC

2
29
GGTAACTATCGTTTACCGTCTAGTAAACC

3
7
CCACCCA


        Random model letter frequencies 
        (from non-redundant database):
        
A 0.282 C 0.222 G 0.229 T 0.267 

MOTIF	WIDTH	BEST POSSIBLE MATCH
1	37	GTTTGGAAACTCTTGTTAGATCTCATTAAATCTAAAC
2	29	GGTAACTATCGTTTACCGTCTAGTAAACC
3	7	CCACCCA

SECTION I: HIGH-SCORING MOTIF OCCURENCES

Each of the following 6 motif occurrences has p-value less then 0.0001
The p-value of a motif occurrence is defined as the probability of a random sequence of the same length as the motif matching that position of the sequence with as good or better a score.
The score for the match of a position in a sequence to a motif is computed by by summing the appropriate entries from each column of the position-dependent scoring matrix that represents the motif.
The q-value of a motif occurrence is defined as the false discovery rate if the occurrence is accepted as significant.
The table is sorted by increasing p-value.
If the start position is larger then the end position, the motif occurrence is on the reverse strand.

Motif	Sequence Name	Start	End	p-value	q-value
1	NC_026011.1	32	68	3.62e-07	0.00719
1	NC_026011.1	29569	29605	1.61e-06	0.016
1	NC_026011.1	8463	8499	3.61e-05	0.213
1	NC_026011.1	20590	20626	5.33e-05	0.213
1	NC_026011.1	22382	22418	6.32e-05	0.213
1	NC_026011.1	10554	10590	6.43e-05	0.213

DEBUGGING INFORMATION

Command line:

fimo --o pr7_2res --motif 1 --norc meme.txt pr_7_2.fasta

Settings:



output directory = pr7_2res
MEME file name = meme.txt
sequence file name = pr_7_2.fasta


background file name = (null)
motif name = motif
allow clobber = false


compute q-values = true
output p-threshold set = false
output q-threshold set = false


text only = false
scan both strands = false
max sequence length = 250000000


output q-value threshold =   1
output p-value threshold = 0.0001
pseudocount = 0.1


verbosity = 2
selected motif = 1
 =

This information can be useful in the event you wish to report a problem with the FIMO software.

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output directory = pr7_2res	MEME file name = meme.txt	sequence file name = pr_7_2.fasta
background file name = (null)	motif name = motif	allow clobber = false
compute q-values = true	output p-threshold set = false	output q-threshold set = false
text only = false	scan both strands = false	max sequence length = 250000000
output q-value threshold = 1	output p-value threshold = 0.0001	pseudocount = 0.1
verbosity = 2	selected motif = 1	=