MAST - Motif Alignment and Search Tool
MAST version 4.1.1 (Release date: Tue Apr 21 15:00:06 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./seed.fasta (peptide)
Last updated on Tue May 18 20:48:59 2010
Database contains 27 sequences, 3770 residues
MOTIFS ./memeout.txt (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 26 MNILFVCTGNTCRSPMAEYWLKQYLP
2 41 GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNADLILVM
3 50 RHPSKTGSVFRLGEMEQFDIDDPYRKQMMAFEDALEMIQRGVDAWVPRIR
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.15
3 0.13 0.08
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 27 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| EPSP2_RALSO/3-140
|
| 8.3e-67
| 138
|
|
| PTP_ACIJO/4-141
|
| 2.9e-56
| 138
|
|
| WZB_ECOLI/3-141
|
| 1.2e-52
| 139
|
|
| ARSC_BACSU/4-137
|
| 2.7e-51
| 134
|
|
| ARSC_STAAU/4-131
|
| 2.1e-34
| 128
|
|
| AMSI_ERWAM/3-141
|
| 2.2e-29
| 139
|
|
| ETP_ECOLI/7-145
|
| 4.8e-29
| 139
|
|
| YOR5_KLEPN/3-141
|
| 3.1e-23
| 139
|
|
| YWLE_BACSU/1-144
|
| 1.4e-21
| 144
|
|
| O66910_AQUAE/1-137
|
| 1e-19
| 137
|
|
| O00810_TRIFO/6-143
|
| 4.4e-13
| 138
|
|
| P74313_SYNY3/2-129
|
| 1.3e-12
| 128
|
|
| PPAC_HUMAN/7-156
|
| 2.8e-12
| 150
|
|
| YFKJ_BACSU/2-149
|
| 3.1e-12
| 148
|
|
| O27408_METTH/3-127
|
| 2.9e-11
| 125
|
|
| P71942_MYCTU/365-494
|
| 1.3e-10
| 130
|
|
| PTPA_STRCO/3-154
|
| 9.3e-10
| 152
|
|
| PTPA_MYCTU/5-152
|
| 5.3e-09
| 148
|
|
| O28910_ARCFU/1-125
|
| 3e-08
| 125
|
|
| O52030_HALSA/7-137
|
| 5.1e-08
| 131
|
|
| PPAL_SCHPO/5-154
|
| 8.5e-08
| 150
|
|
| PPAL_YEAST/8-159
|
| 3.9e-06
| 152
|
|
| O68076_RHOCA/119-257
|
| 5.4e-06
| 139
|
|
| O68022_PSEAE/1-136
|
| 6.1e-06
| 136
|
|
| Y328_SYNY3/1-150
|
| 2.5e-05
| 150
|
|
| O30241_ARCFU/194-354
|
| 0.00032
| 161
|
|
| O66881_AQUAE/1-132
|
| 0.057
| 132
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| EPSP2_RALSO/3-140
| 8.3e-67
|
|
|
| PTP_ACIJO/4-141
| 2.9e-56
|
|
|
| WZB_ECOLI/3-141
| 1.2e-52
|
|
|
| ARSC_BACSU/4-137
| 2.7e-51
|
|
|
| ARSC_STAAU/4-131
| 2.1e-34
|
|
|
| AMSI_ERWAM/3-141
| 2.2e-29
|
|
|
| ETP_ECOLI/7-145
| 4.8e-29
|
|
|
| YOR5_KLEPN/3-141
| 3.1e-23
|
|
|
| YWLE_BACSU/1-144
| 1.4e-21
|
|
|
| O66910_AQUAE/1-137
| 1e-19
|
|
|
| O00810_TRIFO/6-143
| 4.4e-13
|
|
|
| P74313_SYNY3/2-129
| 1.3e-12
|
|
|
| PPAC_HUMAN/7-156
| 2.8e-12
|
|
|
| YFKJ_BACSU/2-149
| 3.1e-12
|
|
|
| O27408_METTH/3-127
| 2.9e-11
|
|
|
| P71942_MYCTU/365-494
| 1.3e-10
|
|
|
| PTPA_STRCO/3-154
| 9.3e-10
|
|
|
| PTPA_MYCTU/5-152
| 5.3e-09
|
|
|
| O28910_ARCFU/1-125
| 3e-08
|
|
|
| O52030_HALSA/7-137
| 5.1e-08
|
|
|
| PPAL_SCHPO/5-154
| 8.5e-08
|
|
|
| PPAL_YEAST/8-159
| 3.9e-06
|
|
|
| O68076_RHOCA/119-257
| 5.4e-06
|
|
|
| O68022_PSEAE/1-136
| 6.1e-06
|
|
|
| Y328_SYNY3/1-150
| 2.5e-05
|
|
|
| O30241_ARCFU/194-354
| 0.00032
|
|
|
| O66881_AQUAE/1-132
| 0.057
|
|
| SCALE
|
| | |
| |
| |
| |
| |
| |
| 1 |
25 |
50 |
75 |
100 |
125 |
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
EPSP2_RALSO/3-140
LENGTH = 138 COMBINED P-VALUE = 3.06e-68 E-VALUE = 8.3e-67
DIAGRAM: [1]-13-[2]-58
[1] [2]
1.0e-27 3.5e-49
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNAD
++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++
1 KTILVVCIGNICRSPMAQALLRQALPGVSVISAGIGALSGYPADPSAVEVMAQHGIDISEHRAQQLTGSLVNRAD
LILVM
+++++
76 LILVMGGAQKREIQARHPSKTGSVFRLGEMEQFDIDDPYRKQMMAFEDALAMIQRGVDAWVPR
PTP_ACIJO/4-141
LENGTH = 138 COMBINED P-VALUE = 1.09e-57 E-VALUE = 2.9e-56
DIAGRAM: [1]-13-[2]-58
[1] [2]
2.6e-29 4.2e-37
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNAD
++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++
1 KNILVVCIGNICRSPMAEYLLKQNYPQLTIHSAGISGMIGYSADEKAQLCMERIGIDMSPHIAKKLNAELLKQAD
LILVM
+++++
76 LILVMSQNQQKHIEQTWPFAKGKTFRLGHWQGKNIPDPYQHDQAFFDETSLLIQTCVADWTKH
WZB_ECOLI/3-141
LENGTH = 139 COMBINED P-VALUE = 4.29e-54 E-VALUE = 1.2e-52
DIAGRAM: [1]-13-[2]-59
[1] [2]
3.4e-26 1.5e-36
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNAD
++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++
1 NNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQISRRLCRNYD
LILVM
+++++
76 LILTMEKRHIERLCEMAPEMRGKVMLFGHWDNECEIPDPYRKSRETFAAVYTLLERSARQWAQA
ARSC_BACSU/4-137
LENGTH = 134 COMBINED P-VALUE = 9.94e-53 E-VALUE = 2.7e-51
DIAGRAM: [1]-11-[2]-56
[1] [2]
7.6e-26 1.4e-34
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNADLI
++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++
1 KIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLV
LVM
+++
76 VTLCGDAADKCPMTPPHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAET
ARSC_STAAU/4-131
LENGTH = 128 COMBINED P-VALUE = 7.76e-36 E-VALUE = 2.1e-34
DIAGRAM: [1]-11-[2]-50
[1] [2]
4.7e-20 5.3e-24
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNADLI
+++++ ++++++++++++++ + +++ ++ +++++++++++ +++++++++ ++ +++++ +++
1 KTIYFICTGNSCRSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLV
LVM
+++
76 VTLCSDADNNCPILPPNVKKEHWGFDDPAGKEWSEFQRVRDEIKLAIEKFKLR
AMSI_ERWAM/3-141
LENGTH = 139 COMBINED P-VALUE = 8.14e-31 E-VALUE = 2.2e-29
DIAGRAM: [1]-13-[2]-59
[1] [2]
3.1e-20 1.4e-18
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNAD
+ ++++++++++++++ +++++ +++ + ++++++ ++ +++ ++ + +++++++ ++ +
1 NSILVVCIGNICRSPTGERLLKAALPERKIASAGLKAMVGGSADETASIVANEHGVSLQDHVAQQLTADMCRDSD
LILVM
+++++
76 LILVMEKKHIDLVCRINPSVRGKTMLFGHWINQQEIADPYKKSRDAFEAVYGVLENAAQKWVNA
ETP_ECOLI/7-145
LENGTH = 139 COMBINED P-VALUE = 1.79e-30 E-VALUE = 4.8e-29
DIAGRAM: [1]-13-[2]-59
[1] [2]
2.8e-20 3.5e-18
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNAD
+ ++++++++++++++ ++++++ ++ ++++ ++ +++ ++ +++++ ++++++ ++++
1 NSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYD
LILVM
+++ +
76 LILAMESEHIAQVTAIAPEVRGKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKR
YOR5_KLEPN/3-141
LENGTH = 139 COMBINED P-VALUE = 1.16e-24 E-VALUE = 3.1e-23
DIAGRAM: [1]-13-[2]-59
[1] [2]
4.1e-17 7.8e-15
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNAD
+++ +++++++++++ ++ +++ ++ + ++ ++++++ ++++ ++ ++ ++ + + +
1 STILIVCTGNICRSPIGERYLQQLLPSKNISSAGTQALVDHEADQSAVEVARKNGISLAGHLGRQFTSKLSKEYE
LILVM
+++++
76 LILVMEKNHIEQISNIAPEARGKTMLFGHWLEQRDIPDPYRKSEEAFASVFKLIEQSALLWAEK
YWLE_BACSU/1-144
LENGTH = 144 COMBINED P-VALUE = 5.33e-23 E-VALUE = 1.4e-21
DIAGRAM: [1]-118
[1]
1.7e-26
MNILFVCTGNTCRSPMAEYWLKQYLP
++++++++++++++++++++++++++
1 MDIIFVCTGNTCRSPMAEALFKSIAEREGLNVNVRSAGVFASPNGKATPHAVEALFEKHIALNHVSSPLTEELME
O66910_AQUAE/1-137
LENGTH = 137 COMBINED P-VALUE = 3.75e-21 E-VALUE = 1e-19
DIAGRAM: [1]-15-[2]-55
[1] [2]
6.5e-15 1.6e-13
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNN
+++ + +++++ +++++++ ++ ++ ++ + +++++++ +++++ + +++ ++
1 MKIAFICTGNSARSQMAEGFAKYYAKKYGLDLEVYSAGSNPAKRIAPEAIKVMKEKGIDISAQYPKKLEDIPLNE
ADLILVM
+++ ++
76 MDLIITLCGGAKESCPTVPGARQEHWDLPDPAAYEGSEEERLEFFRKVRDEIEKRVIKLMEE
O00810_TRIFO/6-143
LENGTH = 138 COMBINED P-VALUE = 1.61e-14 E-VALUE = 4.4e-13
DIAGRAM: [1]-15-[2]-56
[1] [2]
2.0e-12 1.4e-09
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNN
+ ++++ +++++++ +++ + + + + + + +++ + + +++ +++++++ +
1 KAVLFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGFHVGQSPDTRSQKVCKSNGVDISKQRARQITKADFSK
ADLILVM
+ + +
76 FDVIAALDQSILSDINSMKPSNCRAKVVLFNPPNGVDDPYYSSDGFPTMFASISKEMKPFLTE
P74313_SYNY3/2-129
LENGTH = 128 COMBINED P-VALUE = 4.64e-14 E-VALUE = 1.3e-12
DIAGRAM: [1]-11-[2]-50
[1] [2]
3.8e-11 3.2e-10
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNADLI
++ +++ ++++++++++ ++ ++++ ++++++++++++++ + ++ +
1 KKVMFVCKRNSCRSQMAEGFAKTLGAGKIAVTSCGLESSRVHPTAIAMMEEVGIDISGQTSDPIENFNADDYDVV
LVM
+
76 ISLCGCGVNLPPEWVTQEIFEDWQLEDPDGQSLEVFRTVRGQVKERVENLIAK
PPAC_HUMAN/7-156
LENGTH = 150 COMBINED P-VALUE = 1.05e-13 E-VALUE = 2.8e-12
DIAGRAM: [1]-20-[2]-63
[1] [2]
5.8e-14 9.4e-06
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTG
+ ++++ +++++++++++ +++ + + + +++++++++ ++ ++
1 KSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKE
SLCNNADLILVM
+
76 DFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEK
YFKJ_BACSU/2-149
LENGTH = 148 COMBINED P-VALUE = 1.13e-13 E-VALUE = 3.1e-12
DIAGRAM: [1]-20-[2]-61
[1] [2]
4.2e-14 2.5e-06
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTG
++++ ++++++++++++++ + + + + ++ + +++ + +++ +
1 ISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISFDGMLARQVSE
SLCNNADLILVM
+ + + +
76 QDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDLADVPDPYYTGNFEEVCQLIKTGCEQLLAS
O27408_METTH/3-127
LENGTH = 125 COMBINED P-VALUE = 1.06e-12 E-VALUE = 2.9e-11
DIAGRAM: [1]-11-[2]-47
[1] [2]
1.2e-12 4.8e-07
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNADLI
+ ++ + ++ ++++++++++ +++ + + + ++++++ ++ +++ + + + +
1 SKVLFICRNNSGRSQMAEGILRAMYGAHYEVHSAGSDPKDISPLTIQVMEEIGVDMTGHRPKSLREFEGEKFDIV
LVM
+
76 ASLCDEACPVFLGGERYLHAEFPDPRGADIDTLRRIRDEISDWIKKEFNP
P71942_MYCTU/365-494
LENGTH = 130 COMBINED P-VALUE = 4.72e-12 E-VALUE = 1.3e-10
DIAGRAM: [1]-12-[2]-51
[1] [2]
2.1e-09 5.8e-10
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNADL
+++++ + +++++ +++ ++ + +++++ ++++ ++++ +++ + +
1 PSVLFVCVHNAGRSQMAAGLLTHLAGDRIEVRSAGTEPAGQVNPTAVAAMAEMGIDITANAPTLLTGGQVQSSDV
ILVM
+ ++
76 VITMGCGDACPYFPGVSYRNWKLPDPAGQPLDVVRMIRDDIADRVQALIAELLAT
PTPA_STRCO/3-154
LENGTH = 152 COMBINED P-VALUE = 3.44e-11 E-VALUE = 9.3e-10
DIAGRAM: [1]-126
[1]
3.2e-14
MNILFVCTGNTCRSPMAEYWLKQYLP
+ +++++++++++++++ ++ +
1 YRVCFVCTGNICRSPMAEAVFRARVEDAGLGHLVEADSAGTGGWHEGEGADPRTEAVLADHGYGLDHAARQFQQS
PTPA_MYCTU/5-152
LENGTH = 148 COMBINED P-VALUE = 1.96e-10 E-VALUE = 5.3e-09
DIAGRAM: [1]-122
[1]
2.4e-13
MNILFVCTGNTCRSPMAEYWLKQYLP
+++++++++++++++ + + +
1 LHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTE
O28910_ARCFU/1-125
LENGTH = 125 COMBINED P-VALUE = 1.12e-09 E-VALUE = 3e-08
DIAGRAM: [1]-99
[1]
1.5e-13
MNILFVCTGNTCRSPMAEYWLKQYLP
++ +++++ ++ ++ ++++++ ++
1 MKVLFVCIHNTARSVMAEALFNAMAKSWKAESAGVEKAERVDETVKRLLAERGLKAKEKPRTVDEVNLDDFDLIV
O52030_HALSA/7-137
LENGTH = 131 COMBINED P-VALUE = 1.89e-09 E-VALUE = 5.1e-08
DIAGRAM: [1]-17-[2]-47
[1] [2]
2.5e-07 1.3e-08
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLC
+ ++++ + ++++ + + + + + + ++++ + + ++++ + + + + +
1 TKFGFVCVQNAGRSQMSTAFAERERERRDLEDSVEILTGGTHPADHVHEEVVEVMGEEGFDLSERTPREVSTDEL
NNADLILVM
+ + ++
76 ESCDIVATMGCSTLELDAETVDVRDWALDDPDGQEMEQVREIRDDIEQRVVDLFDE
PPAL_SCHPO/5-154
LENGTH = 150 COMBINED P-VALUE = 3.16e-09 E-VALUE = 8.5e-08
DIAGRAM: [1]-124
[1]
5.9e-13
MNILFVCTGNTCRSPMAEYWLKQYLP
++++ +++++++++++ ++ +
1 IQVLFVCLGNICRSPMAEAVFRNEVEKAGLEARFDTIDSCGTGAWHVGNRPDPRTLEVLKKNGIHTKHLARKLST
PPAL_YEAST/8-159
LENGTH = 152 COMBINED P-VALUE = 1.43e-07 E-VALUE = 3.9e-06
DIAGRAM: [1]-126
[1]
2.1e-10
MNILFVCTGNTCRSPMAEYWLKQYLP
+ + ++ +++++++++++ +
1 ISVAFICLGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKINHKGKQIKT
O68076_RHOCA/119-257
LENGTH = 139 COMBINED P-VALUE = 2.01e-07 E-VALUE = 5.4e-06
DIAGRAM: [1]-12-[2]-60
[1] [2]
9.8e-09 4.2e-05
MNILFVCTGNTCRSPMAEYWLKQYLP GYPADPSAVEVMAHHGIDISEHCAQQLTGSLCNNADL
+ ++ + +++ ++ ++++++ + ++ + ++ + + + + +++ ++ +
1 FNVLFICSGNSARSIFAEALLRDLGAGKFTAHSAGTRPGTAINPFALEVLSRNGHDTGGLRAKHLSEFQGPAAPQ
ILVM
76 MEFVFTVCDTAAAEDCPPWPGQPITGHWGLPDPVKATGTEAERALVFAQTYGALRRRIAAFVDL
O68022_PSEAE/1-136
LENGTH = 136 COMBINED P-VALUE = 2.24e-07 E-VALUE = 6.1e-06
DIAGRAM: [1]-110
[1]
7.8e-10
MNILFVCTGNTCRSPMAEYWLKQYLP
++ ++ ++ +++++ ++ + ++
1 MRVLFMCTANSCRSILSEAMFNHLAPPGFEACSAGSQPSGRVHPRSLATLEQAGIATHGLYSKGSEAFEGAPPDI
Y328_SYNY3/1-150
LENGTH = 150 COMBINED P-VALUE = 9.32e-07 E-VALUE = 2.5e-05
DIAGRAM: [1]-124
[1]
1.7e-10
MNILFVCTGNTCRSPMAEYWLKQYLP
++ ++++ +++++++ ++ +
1 MKLLFVCLGNICRSPAAENIMNAQIDQAGLGAKIVCDSAGTSSYHVGDSPDRRMTESLKKRGYRVQGRARQFFPE
O30241_ARCFU/194-354
LENGTH = 161 COMBINED P-VALUE = 1.18e-05 E-VALUE = 0.00032
DIAGRAM: 61-[1]-74
[1]
3.5e-09
MNILFVCTGNTCRS
++ +++ + ++
1 TLGSFKVLGMPDHNYNVIEIKDNTLTLKLRFVDYGEVEIGRYTINPETPESISVYQRIAKPKKVLFLSRSNDCRT
PMAEYWLKQYLP
++++++ + +
76 KIAEAIFNHISPNNMLAVSAGIEPAQDLDLRAVATMRELGLKINGKPRKFSEDMVSDFDAIVEFDELGVGEFWDV
O66881_AQUAE/1-132
LENGTH = 132 COMBINED P-VALUE = 2.10e-03 E-VALUE = 0.057
DIAGRAM: [1]-106
[1]
3.3e-06
MNILFVCTGNTCRSPMAEYWLKQYLP
+++ + + ++++++ ++
1 MKIGFISKKGAVRALLAEAIAREILKKMGIKAEVYSAGLEPERTTPREVIEVLKEKGYPTKSLYPKPIRKIPYKS
Debugging Information
CPU: kodomo-count
Time 0.052003 secs.
mast ./memeout.txt -d ./seed.fasta -ev 10.000000 -mt 0.000100
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information