Gene Ontology

  1. Описание функции белка arsC_BACSU в соответствии с GO-аннотацией

      Онтология GO (название словаря) Количество разных ассоциированных терминов GO Функция белка
    (краткое описание, близкое к тексту определения термина(ов) GO
    Где?      
    Зачем, для чего? Process 4 1)дефосфорилирование белков
    2)дефосфорилирование пептидил-тирозина
    3)ответ на арсенат-содержащий субстрат
    4)процесс окислительного разрушения
    Молекулярный механизм? Function 4 1)тирозин-фосфотазная активность
    2)оксидредуктазная активность
    3)гидролазная активность
    4)арсенатредуктазная активность
    Специфичность?      

  2. Описание терминов GO

    GO ID выбранного термина Список синонимов Список ближайших родительских терминов GO с указанием типа связи Список ближайших дочерних терминов GO с указанием типа связи
    GO:0006470 protein amino acid dephosphorylation Связь is a:
    1)dephosphorylation (GO:0016311)
    2)protein modification process (GO:0006464)
    Связь is a:
    1)dephosphorylation of RNA polymerase II C-terminal domain (GO:0070940)
    2)histone dephosphorylation (GO:0016576)
    3)peptidyl-serine dephosphorylation (GO:0070262)
    4)peptidyl-tyrosine dephosphorylation (GO:0035335)
    Положительная регуляция:
    1)positive regulation of protein dephosphorylation (GO:0035307)
    Отрицательная регуляция:
    1)positive regulation of protein dephosphorylation (GO:0035307)
    GO:0016491 narrow: oxidoreductase activity, acting on other substrates
    exact: redox activity
    Связь is a:
    catalytic activity (GO:0003824)
    vitamin D 25-hydroxylase activity (GO:0070643)
    vitamin D 24-hydroxylase activity (GO:0070576)
    violaxanthin de-epoxidase activity (GO:0046422)
    vinyl chloride reductive dehalogenase activity (GO:0018698)
    uracil oxygenase activity (GO:0052614)
    tyramine-beta hydroxylase activity (GO:0004836)
    tRNA-(2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine)-hydroxylase activity (GO:0045301)
    trimethylarsine oxidase activity (GO:0034542)
    thyroxine 5-deiodinase activity (GO:0033798)
    thyroxine 5'-deiodinase activity (GO:0004800)
    tetrahydrothiophene 1-oxide reductase activity (GO:0019174)
    tetrachloroethene reductive dehalogenase activity (GO:0050629)
    sulfur reductase activity (GO:0033796)
    sulfur oxygenase reductase activity (GO:0043826)
    steroid dehydrogenase activity (GO:0016229)
    sphingosine hydroxylase activity (GO:0000170)
    selenate reductase activity (GO:0033797)
    pyrogallol hydroxytransferase activity (GO:0018706)
    phthalate dioxygenase reductase activity (GO:0015048)
    perchlorate reductase activity (GO:0034937)
    oxygen evolving activity (GO:0010242)
    oxidoreductase activity, oxidizing metal ions (GO:0016722)
    oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond (GO:0046992)
    oxidoreductase activity, acting on the CH-NH2 group of donors (GO:0016638)
    oxidoreductase activity, acting on the CH-NH group of donors (GO:0016645)
    oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627)
    oxidoreductase activity, acting on the aldehyde or oxo group of donors (GO:0016903)
    oxidoreductase activity, acting on superoxide radicals as acceptor (GO:0016721)
    oxidoreductase activity, acting on single donors with incorporation of molecular oxygen (GO:0016701)
    oxidoreductase activity, acting on reduced flavodoxin as donor (GO:0016737)
    oxidoreductase activity, acting on phosphorus or arsenic in donors (GO:0030613)
    oxidoreductase activity, acting on peroxide as acceptor (GO:0016684)
    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
    oxidoreductase activity, acting on other nitrogenous compounds as donors (GO:0016661)
    oxidoreductase activity, acting on NADH or NADPH (GO:0016651)
    oxidoreductase activity, acting on iron-sulfur proteins as donors (GO:0016730)
    oxidoreductase activity, acting on hydrogen as donor (GO:0016695)
    oxidoreductase activity, acting on halogen in donors (GO:0052583)
    oxidoreductase activity, acting on diphenols and related substances as donors (GO:0016679)
    oxidoreductase activity, acting on CH-OH group of donors (GO:0016614)
    oxidoreductase activity, acting on CH or CH2 groups (GO:0016725)
    oxidoreductase activity, acting on a sulfur group of donors (GO:0016667)
    oxidoreductase activity, acting on a heme group of donors (GO:0016675)
    oxidative RNA demethylase activity (GO:0035515)
    oxidative DNA demethylase activity (GO:0035516)
    ortho-trichlorophenol reductive dehalogenase activity (GO:0050781)
    NADPH:sulfur oxidoreductase activity (GO:0043914)
    NADPH-adrenodoxin reductase activity (GO:0015039)
    N-ethylmaleimide reductase activity (GO:0008748)
    monooxygenase activity (GO:0004497)
    malolactic enzyme activity (GO:0043883)
    hydroxymethylbutenyl pyrophosphate reductase activity (GO:0042380)
    heme-copper terminal oxidase activity (GO:0015002)
    geranylgeranyl reductase activity (GO:0045550)
    fatty acid alpha-hydroxylase activity (GO:0080132)
    F420H2 dehydrogenase activity (GO:0043738)
    dioxygenase activity (GO:0051213)
    dimethylarsinate reductase activity (GO:0034550)
    dihydropterin oxidase activity (GO:0004154)
    dihydronicotinamide riboside quinone reductase activity (GO:0001512)
    delta1-piperideine-6-carboxylate dehydrogenase activity (GO:0043871)
    crotonyl-CoA reductase activity (GO:0043880)
    chromate reductase activity (GO:0034567)
    chlorate reductase activity (GO:0047143)
    arsenate reductase activity (GO:0030611)
    alpha-ketoacid dehydrogenase activity (GO:0003826)
    [formate-C-acetyltransferase]-activating enzyme activity (GO:0043365)
    3-monobromobisphenol A reductive dehalogenase activity (GO:0034540)
    3,8-divinyl protochlorophyllide a 8-vinyl reductase activity (GO:0051744)
    3,3'-dibromobisphenol A reductive dehalogenase activity (GO:0034555)
    3,3',5-tribromobisphenol A reductive dehalogenase activity (GO:0034554)
    3,3',5,5'-tetrabromobisphenol A reductive dehalogenase activity (GO:0034539)
    2-octoprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase activity (GO:0008682)
    2-octaprenylphenol hydroxylase activity (GO:0019168)
    2-chloro-N-isopropylacetanilide reductive dehalogenase activity (GO:0018700)
    2,5-dichlorohydroquinone reductive dehalogenase activity (GO:0018701)
    2,4-dichlorophenoxyacetate dehalogenase activity (GO:0018703)
    2,4-dichloroaniline reductive dehalogenase activity (GO:0034546)
    1,2-dichloroethene reductive dehalogenase activity (GO:0018705)
    1,1-dichloroethane reductive dehalogenase activity (GO:0034949)
    1,1-dichloro-2,2-bis(4-chlorophenyl)ethene dehalogenase activity (GO:0018702)
    1,1,2-trichloroethene reductive dehalogenase activity (GO:0050697)
    1,1,1-trichloroethane reductive dehalogenase activity (GO:0018699)
    GO:0016787 нет Связь is a:
    catalytic activity (GO:0003824)
    beta-alanyl-dopamine hydrolase activity (GO:0003832)
    beta-alanyl-histamine hydrolase activity (GO:0031964)
    cytosine C-5 DNA demethylase activity (GO:0051747)
    deacetylase activity (GO:0019213)
    GPI-anchor transamidase activity (GO:0003923)
    hydrolase activity, acting on acid anhydrides (GO:0016817)
    hydrolase activity, acting on acid carbon-carbon bonds (GO:0016822)
    hydrolase activity, acting on acid carbon-phosphorus bonds (GO:0016827)
    hydrolase activity, acting on acid halide bonds (GO:0016824)
    hydrolase activity, acting on acid phosphorus-nitrogen bonds (GO:0016825)
    hydrolase activity, acting on acid sulfur-nitrogen bonds (GO:0016826)
    hydrolase activity, acting on acid sulfur-sulfur bonds (GO:0016828)
    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810)
    hydrolase activity, acting on carbon-sulfur bonds (GO:0046508)
    hydrolase activity, acting on ester bonds (GO:0016788)
    hydrolase activity, acting on ether bonds (GO:0016801)
    hydrolase activity, acting on glycosyl bonds (GO:0016798)
    peptidase activity (GO:0008233)
    serine hydrolase activity (GO:0017171)
  3. Род рис - Oryza (англ. rice)
    NCBI_TaxID - 4527

    Соотношение между реальными и гипотетическими белками из рода Oryza (по данным UniProt)

      Количество в UniProt Количество в UniRef100
    Существование белка доказано экспериментально 444 1155
    Известны только соответствующие транскрипты 16205 15056
    Гипотетический белок, предсказан по гомологии 10479 9096
    Иные предсказанные гипотетические белки 120191 109921
  4. м выбрала бактерию Protochlamydia amoebophila. В ее геноме 2030 белков.
    12% белков генома приписаны термины GO.
    Больше всего записей с термином из словаря F - 502.
    В словаре C самый частый термин - GO0005737.
    В словаре P - GO0006412.
    В словаре F - GO0005524.
  5. Биосинтез липидов - lipid biosynthetic process, GO:0008610, P
    Было найдено три белка из моего таксона с данной функцией.
    (([SWISSPROT_links-ID:ASCL1_ORYSJ_12] | [SWISSPROT_links-ID:ASCL2_ORYSJ_5]) | [SWISSPROT_links-ID:ASCL3_ORYSJ_11])
    FASTA

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