BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 19,586 sequences; 5,755,958 total letters Query= sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus subtilis (strain 168) GN=clpX PE=2 SV=3 Length=420 Score E Sequences producing significant alignments: (Bits) Value sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding sub... 840 0.0 sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding sub... 733 0.0 sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding sub... 712 0.0 sp|Q891J8|CLPX_CLOTE ATP-dependent Clp protease ATP-binding sub... 596 0.0 sp|B2UX12|CLPX_CLOBA ATP-dependent Clp protease ATP-binding sub... 593 0.0 tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding s... 560 0.0 tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding s... 548 0.0 sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU... 104 1e-24 sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU... 101 8e-24 sp|P39778|CLPY_BACSU ATP-dependent protease ATPase subunit ClpY... 100 3e-23 sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU... 97.8 2e-22 tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subuni... 65.9 9e-12 tr|Q81VV9|Q81VV9_BACAN ATP-dependent Clp protease ATP-binding s... 60.5 5e-10 tr|Q890L5|Q890L5_CLOTE Negative regulator of genetic competence... 57.4 4e-09 sp|P37571|CLPC_BACSU Negative regulator of genetic competence C... 56.6 8e-09 sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding sub... 54.7 3e-08 tr|Q899V4|Q899V4_CLOTE Negative regulator of genetic competence... 52.4 2e-07 tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding s... 51.2 3e-07 tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH ... 50.4 6e-07 tr|Q5FM98|Q5FM98_LACAC ATPase OS=Lactobacillus acidophilus (str... 47.0 9e-06 tr|Q5FHW6|Q5FHW6_LACAC ATP-dependent protease OS=Lactobacillus ... 45.8 2e-05 tr|Q899H3|Q899H3_CLOTE ATP-dependent zinc metalloprotease FtsH ... 45.1 3e-05 tr|B0S3J0|B0S3J0_FINM2 Chaperone protein ClpB OS=Finegoldia mag... 45.1 3e-05 sp|B2V338|RUVB_CLOBA Holliday junction ATP-dependent DNA helica... 42.7 1e-04 tr|Q891B9|Q891B9_CLOTE ATP-dependent zinc metalloprotease FtsH ... 42.7 2e-04 tr|Q5L3T1|Q5L3T1_GEOKA ATP-dependent zinc metalloprotease FtsH ... 42.0 2e-04 tr|Q81VX5|Q81VX5_BACAN ATP-dependent zinc metalloprotease FtsH ... 41.6 3e-04 tr|Q898D1|Q898D1_CLOTE ATP-dependent zinc metallopeptidase OS=C... 40.8 5e-04 tr|Q5FMA3|Q5FMA3_LACAC ATP-dependent zinc metalloprotease FtsH ... 40.8 6e-04 tr|Q5FLA7|Q5FLA7_LACAC ATP-dependent Clp protease, ATP-binding ... 40.8 6e-04 sp|Q898C7|CLPB_CLOTE Chaperone protein ClpB OS=Clostridium teta... 40.8 7e-04 tr|B0S222|B0S222_FINM2 ATP-dependent zinc metalloprotease FtsH ... 40.8 7e-04 > sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus subtilis (strain 168) GN=clpX PE=2 SV=3 Length=420 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/420 (100%), Positives = 420/420 (100%), Gaps = 0/420 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD Sbjct 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS Sbjct 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 Query 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG Sbjct 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 Query 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK Sbjct 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 Query 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 420 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA Sbjct 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 420 > sp|Q81LB9|CLPX_BACAN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus anthracis GN=clpX PE=3 SV=1 Length=419 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/420 (87%), Positives = 393/420 (94%), Gaps = 1/420 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQ QVRKLVAGPGVYICDECIELCTEIV+EEL +EEVEFKD Sbjct 1 MFKFNDEKGQLKCSFCGKTQTQVRKLVAGPGVYICDECIELCTEIVQEELAKDEEVEFKD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 VPKP EIREIL+EYVIGQD AKK+LAVAVYNHYKRINSNSK+DDVEL+KSNI+LIGPTGS Sbjct 61 VPKPVEIREILDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGS 120 Query 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 Query 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 Query 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 LFICGGAFDGIE IIKRRLG+KVIGFG++ K AD+ ++ +LS VLPEDLLRFGLIPEFIG Sbjct 241 LFICGGAFDGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLIPEFIG 300 Query 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 RLPVIA+LE LDE+ALV ILTKPKNALVKQF+K+LELD+VELEFEE AL EIAKKAIERK Sbjct 301 RLPVIANLEPLDEDALVDILTKPKNALVKQFQKLLELDDVELEFEEGALIEIAKKAIERK 360 Query 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTSA 420 TGARGLRSIIEG+ML+VMFELPSR DIEKC++T TV P+L+L+DGT V KTSA Sbjct 361 TGARGLRSIIEGLMLEVMFELPSRKDIEKCILTKETVADNAAPKLVLQDGT-VLDTKTSA 419 > sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Geobacillus kaustophilus (strain HTA426) GN=clpX PE=3 SV=1 Length=421 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/421 (86%), Positives = 393/421 (93%), Gaps = 1/421 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELG EEE EFKD Sbjct 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGNEEEFEFKD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 VPKP EIREIL+EYVIGQD+AKKSLAVAVYNHYKRINS SK+DDVELSKSNI +IGPTGS Sbjct 61 VPKPLEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGS 120 Query 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE+AEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYI 180 Query 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDK+ARKSENPSITRDVSGEGVQQALLKILEGT+ASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNI 240 Query 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 LFICGGAFDGIE IIKRRLG+KVIGFGA+ D+++++LLSKVLPEDLL+FGLIPEFIG Sbjct 241 LFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQTDVDEKNLLSKVLPEDLLKFGLIPEFIG 300 Query 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 RLPVI +LE LDE+AL+ ILTKPKNA+VKQ++KMLELD VELEFEE AL EIAKKAIERK Sbjct 301 RLPVITTLEPLDEQALIDILTKPKNAIVKQYQKMLELDGVELEFEEAALREIAKKAIERK 360 Query 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVS-QDKTS 419 TGARGLRSIIEGIMLDVMFELPSR+D++KC+IT TV +PP L+ DGT + + KTS Sbjct 361 TGARGLRSIIEGIMLDVMFELPSREDVQKCIITLDTVRGTKPPTLIRHDGTVIELERKTS 420 Query 420 A 420 A Sbjct 421 A 421 > sp|Q891J8|CLPX_CLOTE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium tetani (strain Massachusetts / E88) GN=clpX PE=3 SV=1 Length=431 Score = 596 bits (1536), Expect = 0.0, Method: Compositional matrix adjust. Identities = 287/399 (72%), Positives = 341/399 (85%), Gaps = 1/399 (0%) Query 5 NEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKP 64 N++K QLKCSFCGK QDQV++LVAGPGVYICDECIELC+EI+ +EL + + +PKP Sbjct 6 NDDKKQLKCSFCGKKQDQVKRLVAGPGVYICDECIELCSEIITDELEEDINTDMSSLPKP 65 Query 65 QEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTL 124 EI+ L++YVIGQD AKK+L+VAVYNHYKRIN N+ DDVEL KSNI L+GPTGSGKTL Sbjct 66 SEIKSYLDDYVIGQDDAKKALSVAVYNHYKRINLNNVNDDVELQKSNILLLGPTGSGKTL 125 Query 125 LAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEID 184 LAQT+A+ LNVPFAIADAT+LTEAGYVGEDVENILLKLIQ ADYD+EKAE+GIIYIDEID Sbjct 126 LAQTMAKFLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDIEKAERGIIYIDEID 185 Query 185 KVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFIC 244 K+ARKSENPSITRDVSGEGVQQ+LLKILEGT+ASVPPQGGRKHPHQEFIQ++TTNILFIC Sbjct 186 KIARKSENPSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPHQEFIQLNTTNILFIC 245 Query 245 GGAFDGIEQIIKRRLGQKVIGFGADNKAA-DLEKEDLLSKVLPEDLLRFGLIPEFIGRLP 303 GGAFDG++++I+RR +GFGAD K+ D +LL K++PEDLL+FGLIPEFIGRLP Sbjct 246 GGAFDGVDKLIERRTRNSSLGFGADIKSKRDENVGELLKKIMPEDLLKFGLIPEFIGRLP 305 Query 304 VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGA 363 + +L LD +ALV ILT+PKNALVKQ+KK+ E+DNV LEF+EEAL IA++AI R TGA Sbjct 306 ITVTLSALDRDALVEILTEPKNALVKQYKKLFEMDNVHLEFKEEALKAIAEEAIRRSTGA 365 Query 364 RGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEP 402 RGLRSIIE IM D+MFE+PS + I K +I TV++ P Sbjct 366 RGLRSIIEEIMKDIMFEIPSDESISKVIINEETVSNKNP 404 > sp|B2UX12|CLPX_CLOBA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=clpX PE=3 SV=1 Length=429 Score = 593 bits (1530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/409 (71%), Positives = 356/409 (87%), Gaps = 8/409 (2%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEF-- 58 M K++E+K QLKCSFCGKTQDQV++L+AGPGVYICDECI+LC+EI+ +E EE VEF Sbjct 1 MAKYDEKK-QLKCSFCGKTQDQVKRLIAGPGVYICDECIDLCSEIIADEF--EETVEFDT 57 Query 59 KDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPT 118 K VPKP EI++ L+ YVIGQ++AKKSL+VAVYNHYKRIN+N + DVELSKSNI L+GPT Sbjct 58 KSVPKPNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPT 117 Query 119 GSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGII 178 GSGKTLLAQTLA++LNVPFAIADAT+LTEAGYVGEDVENILLKLIQ ADYDVE+AE+GII Sbjct 118 GSGKTLLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVERAERGII 177 Query 179 YIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTT 238 YIDEIDK+ARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI+T+ Sbjct 178 YIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTS 237 Query 239 NILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKE--DLLSKVLPEDLLRFGLIP 296 NILFICGGAFDG+++II+ R + +GFGA+ + EK+ LL +++P DLL+FGLIP Sbjct 238 NILFICGGAFDGVDKIIENRTRKSSMGFGAEIQGKH-EKDIGKLLKEIMPGDLLKFGLIP 296 Query 297 EFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKA 356 EF+GRLP++ +LE LD++AL+ ILTKPKNALVKQ+KK+ ELD+VELEF EAL+ IA++A Sbjct 297 EFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAEEA 356 Query 357 IERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 405 IERKTGARGLR+IIE +M ++M+E+PS + I K +IT + E P++ Sbjct 357 IERKTGARGLRAIIEEMMTEIMYEIPSDEQITKVIITEECIKDKENPQV 405 > tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Finegoldia magna (strain ATCC 29328) GN=clpX PE=3 SV=1 Length=411 Score = 560 bits (1442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 266/402 (66%), Positives = 343/402 (85%), Gaps = 2/402 (0%) Query 9 GQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFK-DVPKPQEI 67 Q KCSFCGK+QD+V+KL+AGPGV+ICDEC+ LC I+EEE + ++ + D+PKP EI Sbjct 6 NQYKCSFCGKSQDEVKKLIAGPGVFICDECVSLCNSIIEEEFKDVDNIQERIDLPKPIEI 65 Query 68 REILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQ 127 +++L++YVI Q++ KK+LAVAVYNHYKRINSN +DVEL KSNI L+GPTGSGKTLLA+ Sbjct 66 KDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLMNNDVELQKSNILLVGPTGSGKTLLAE 125 Query 128 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA 187 TLA+IL+VPFAIADATSLTEAGYVGEDVEN++LKLIQAADYD+EKAE+GIIYIDEIDK+ Sbjct 126 TLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAADYDIEKAEQGIIYIDEIDKIT 185 Query 188 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA 247 RKSENPSITRDVSGEGVQQALLKI+EGT+ +VPPQGGRKHP+QE+IQ+DT NILFI GGA Sbjct 186 RKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQVDTRNILFIVGGA 245 Query 248 FDGIEQIIKRRLGQKVIGFGADNKAADLEK-EDLLSKVLPEDLLRFGLIPEFIGRLPVIA 306 F+G+E+II+RR K IGFGAD + +K +L PEDL++FGLIPEF+GR+PV+ Sbjct 246 FEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDFRPEDLIKFGLIPEFVGRIPVLV 305 Query 307 SLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGL 366 +L++LDE+AL+ IL +PKNA++KQ++++ ++D+VELEF+E+AL IAK A +RKTGARGL Sbjct 306 TLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAKLAYDRKTGARGL 365 Query 367 RSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLK 408 R+IIE ++++MFELPSR DI K ++T +V G+ P+L+ K Sbjct 366 RTIIEKSLMNIMFELPSRQDISKVILTKESVLEGKDPKLVFK 407 > tr|Q5FKR6|Q5FKR6_LACAC ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpX PE=3 SV=1 Length=420 Score = 548 bits (1411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 259/404 (64%), Positives = 330/404 (82%), Gaps = 0/404 (0%) Query 10 QLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIRE 69 ++KC+FCGKTQDQV+K++AG GVYIC+EC++L +I+++EL + ++PKP EI++ Sbjct 10 EIKCAFCGKTQDQVKKMIAGNGVYICNECVDLAKKIIDDELRADSLKTASELPKPVEIKK 69 Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 L++YVIGQD+AKK L+VAVYNHYKRI+ EL KSNI++IGPTGSGKT LAQTL Sbjct 70 QLDQYVIGQDRAKKVLSVAVYNHYKRISQMDVDSSTELQKSNIAMIGPTGSGKTYLAQTL 129 Query 130 ARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARK 189 ARILNVPFAIADAT+LTEAGYVGEDVENILLKL+Q ADYD+E+A++GIIYIDEIDK+++K Sbjct 130 ARILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDLERAQRGIIYIDEIDKISKK 189 Query 190 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFD 249 SEN SITRDVSGEGVQQ+LLKILEGT+ASVPPQGGRKHP QE I++DTTNILFI GGAFD Sbjct 190 SENVSITRDVSGEGVQQSLLKILEGTIASVPPQGGRKHPQQEMIKMDTTNILFIVGGAFD 249 Query 250 GIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLE 309 GIEQI+K RLG+K IGFGA+N+ ++ +D + DL++FG+IPEFIGR+P+I +L+ Sbjct 250 GIEQIVKSRLGKKTIGFGAENEVNKVDADDWTRHLTTADLVKFGMIPEFIGRIPIITTLD 309 Query 310 KLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSI 369 KLD + LV +LT+PKNALVKQ+KK+L LD VEL+F + AL IA AI+R GARGLR+I Sbjct 310 KLDNKDLVRVLTEPKNALVKQYKKLLSLDGVELKFTDGALKAIADLAIQRNMGARGLRTI 369 Query 370 IEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEV 413 IE ++D+M+E PS +DIE +T +T PR+ K+ EV Sbjct 370 IENSIMDIMYETPSEEDIESVEVTKDVITRHAQPRITRKNAEEV 413 > sp|Q5FKD8|HSLU_LACAC ATP-dependent protease ATPase subunit HslU OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=hslU PE=3 SV=1 Length=466 Score = 104 bits (259), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/142 (41%), Positives = 89/142 (63%), Gaps = 14/142 (10%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P+EI +ILNEY+IGQD+AKKS+A+A+YN Y+R+ ++ E++ N+ + GPTG GKT Sbjct 6 PKEIVKILNEYIIGQDEAKKSVAIALYNRYRRMQLPKQMQR-EITPKNLLMAGPTGVGKT 64 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 183 +A+ LA I+ PF +AT TE GYVG DVE+++ L+ A + ++E Sbjct 65 EIARRLATIVEAPFVKVEATKFTEVGYVGRDVESMVRDLVGEA-----------VRMEEK 113 Query 184 DKVARKSENPSITRDVSGEGVQ 205 D+ AR P T++ + E V+ Sbjct 114 DQFARVK--PQATKEANKELVR 133 Score = 90.5 bits (223), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 119/239 (50%), Gaps = 66/239 (28%) Query 167 DYD------VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 DYD +E+++ GII+IDEIDK+ + N + +VS EGVQ+ +L I+EG+ + Sbjct 258 DYDTIYQRAIERSQNNGIIFIDEIDKII--AGNKRNSGEVSREGVQRDILPIVEGSTVNT 315 Query 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 279 ++ + T +ILFI GAF A++K +D Sbjct 316 -----------KYGPVSTDHILFIAAGAF-------------------AESKPSD----- 340 Query 280 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 339 LIPE GR P+ L L ++ V IL P+N+L+KQ+ +L+ D Sbjct 341 --------------LIPELQGRFPIRVELNALTKDDFVKILKDPQNSLLKQYIALLKADG 386 Query 340 VELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 ++L F +EA+ +IA+ A + GAR L +I+E ++ DV++E P D+E IT Sbjct 387 IKLIFTQEAVDKIAEIAFDVNQGTDNIGARRLSTILEKLLEDVLYEGP---DMEMGEIT 442 > sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU OS=Geobacillus kaustophilus (strain HTA426) GN=hslU PE=3 SV=1 Length=465 Score = 101 bits (252), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 78/225 (35%), Positives = 113/225 (50%), Gaps = 56/225 (25%) Query 174 EKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 233 + GII+IDEIDK+AR S S + DVS EGVQ+ +L I+EG+ ++ Sbjct 270 QSGIIFIDEIDKIAR-SGAVSGSADVSREGVQRDILPIVEGSTVMT-----------KYG 317 Query 234 QIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFG 293 + T +ILFI GAF ++K P DL Sbjct 318 PVKTDHILFIAAGAFH-------------------------------MAK--PSDL---- 340 Query 294 LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 353 IPE GR P+ L KL + V IL +P NAL+KQ++ +L + + LEF ++A+ +IA Sbjct 341 -IPELQGRFPIRVELAKLSVDDFVRILVEPNNALIKQYQALLATEGISLEFSDDAIRKIA 399 Query 354 KKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 + A E GAR L +I+E ++ D++FE P I+K VIT Sbjct 400 EVAFEVNQTTDNIGARRLHTILEKLLEDLLFEAPD-IGIDKVVIT 443 Score = 92.8 bits (229), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 44/103 (43%), Positives = 73/103 (71%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L+++++GQ +AKK++A+A+ N Y+R + K+ D E+ NI +IGPTG GKT Sbjct 8 PRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRD-EVMPKNILMIGPTGVGKT 66 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ LA+++ PF +AT TE GYVG DVE+++ L++ + Sbjct 67 EIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETS 109 > sp|P39778|CLPY_BACSU ATP-dependent protease ATPase subunit ClpY OS=Bacillus subtilis (strain 168) GN=clpY PE=1 SV=1 Length=467 Score = 100 bits (248), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 119/230 (52%), Gaps = 57/230 (25%) Query 170 VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 228 V++AE+ GII+IDEIDK+A K+ S + DVS EGVQ+ +L I+EG+ Sbjct 267 VQRAEESGIIFIDEIDKIA-KNGGASSSADVSREGVQRDILPIVEGSTVVT--------- 316 Query 229 HQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPED 288 ++ + T ++LFI GAF ++K P D Sbjct 317 --KYGSVKTDHVLFIAAGAFH-------------------------------MAK--PSD 341 Query 289 LLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEA 348 L IPE GR P+ L KL + V IL +P NAL+KQ++ +L+ + + LEF +EA Sbjct 342 L-----IPELQGRFPIRVELNKLTVDDFVRILVEPDNALLKQYQALLQTEGISLEFSDEA 396 Query 349 LSEIAKKA--IERKT---GARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 + +IA+ A + + T GAR L +I+E ++ D+ FE P +EK IT Sbjct 397 IHKIAEVAYHVNQDTDNIGARRLHTILERLLEDLSFEAPDV-TMEKITIT 445 Score = 90.5 bits (223), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 86/134 (64%), Gaps = 6/134 (4%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I + L++Y++GQ AKK++AVA+ N Y+R + K+ D E+ NI ++GPTG GKT Sbjct 8 PRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKD-EVVPKNILMMGPTGVGKT 66 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEI 183 +A+ +A++ PF +AT TE GYVG DVE+++ L++ + + K EK ++E+ Sbjct 67 EIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETS-VRLIKEEK----MNEV 121 Query 184 DKVARKSENPSITR 197 + A ++ N I R Sbjct 122 KEQAEENANKRIVR 135 > sp|Q81WK6|HSLU_BACAN ATP-dependent protease ATPase subunit HslU OS=Bacillus anthracis GN=hslU PE=3 SV=1 Length=463 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 115/230 (50%), Gaps = 59/230 (26%) Query 170 VEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 228 V +AE+ GII+IDEIDK+A K N + DVS EGVQ+ +L I+EG+ +V + G Sbjct 265 VYRAEQLGIIFIDEIDKIAGKQSN---SVDVSREGVQRDILPIVEGS--NVATKYG---- 315 Query 229 HQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPED 288 + T ILF+ GAF +SK P D Sbjct 316 -----SVKTDYILFVAAGAFH-------------------------------MSK--PSD 337 Query 289 LLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEA 348 L IPE GR P+ L KL + V IL +P NAL+KQ+ +L + +E+EF +EA Sbjct 338 L-----IPELQGRFPIRVELTKLSTDDFVKILIEPDNALIKQYMALLATEGIEIEFSDEA 392 Query 349 LSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 + +IA+ A + GAR L +I+E ++ D+ FE S +EK IT Sbjct 393 IRKIAEIAYQVNQDTDNIGARRLHTIMEKLLEDLSFE-ASEITLEKITIT 441 Score = 93.6 bits (231), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 45/103 (44%), Positives = 71/103 (69%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L++Y+IGQ AKK++AVA+ N Y+R + D E++ NI +IGPTG GKT Sbjct 7 PRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRD-EIAPKNILMIGPTGVGKT 65 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ +A+++ PF +AT TE GYVG DVE+++ L++ + Sbjct 66 EVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETS 108 > tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subunit OS=Geobacillus kaustophilus (strain HTA426) GN=GK0078 PE=3 SV=1 Length=810 Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 87/329 (26%), Positives = 150/329 (46%), Gaps = 64/329 (19%) Query 66 EIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLL 125 ++ EIL+ V+GQD+A K++A AV + + + D + + +GPTG GKT L Sbjct 501 KLEEILHSRVVGQDEAVKAVAKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTEL 554 Query 126 AQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVE 171 A+ LA RI + +TS + GYVG + L + ++ Y V Sbjct 555 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSV- 613 Query 172 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 231 + +DE++K +P + LL++LE + GR + Sbjct 614 ------VLLDEMEKA-----HPDVF---------NILLQVLED--GRLTDSKGRTVDFRN 651 Query 232 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLR 291 I I T+N+ GA +KR K +GF + + + +D+ SKV+ E L+ Sbjct 652 TIIIMTSNV-----GA-----DALKR---NKYVGFNIQD--GNQQYKDMKSKVMDE--LK 694 Query 292 FGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSE 351 PEF+ R+ I L+++ L I+ + LVK+ K+ +++LE E A+ + Sbjct 695 KAFRPEFLNRIDEIIVFHSLEKDHLKQIVRLMADTLVKRLKEQ----DIDLELTEAAIEK 750 Query 352 IAKKAIERKTGARGLRSIIEGIMLDVMFE 380 IA + + + GAR LR ++ + D + E Sbjct 751 IAAEGFDPEYGARPLRRALQKHVEDRLSE 779 > tr|Q81VV9|Q81VV9_BACAN ATP-dependent Clp protease ATP-binding subunit ClpC OS=Bacillus anthracis GN=clpC PE=3 SV=1 Length=811 Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 93/334 (28%), Positives = 150/334 (45%), Gaps = 64/334 (19%) Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 IL++ VIGQD+A ++A AV + + + D + + +GPTG GKT LA+ L Sbjct 506 ILHDRVIGQDEAVVAVAKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELARAL 559 Query 130 A-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAEK 175 A RI + +TS + GYVG + L + ++ Y V Sbjct 560 AESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSV----- 614 Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 + +DE++K +P + LL++LE + GR + I I Sbjct 615 --VLLDEVEKA-----HPDVF---------NILLQVLED--GRLTDSKGRTVDFRNTIVI 656 Query 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 T+N+ GA + +KR K +GF +++ D D+ KV+ E L+ Sbjct 657 MTSNV-----GA-----EALKR---NKHLGFNVQDESRDYS--DMKGKVMDE--LKKAFR 699 Query 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 PEF+ R+ I L+++ + I+T N LV + K+ +EL E A+S IA K Sbjct 700 PEFLNRIDEIIVFHMLEKKHIQEIVTLMVNQLVNRLKEQ----EIELHLTEGAISAIADK 755 Query 356 AIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 389 +R+ GAR LR I+ + D + E + IEK Sbjct 756 GFDREYGARPLRRAIQKHVEDRLSEELLKGAIEK 789 > tr|Q890L5|Q890L5_CLOTE Negative regulator of genetic competence mecB/clpC OS=Clostridium tetani (strain Massachusetts / E88) GN=mecB PE=3 SV=1 Length=811 Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 91/338 (27%), Positives = 143/338 (42%), Gaps = 62/338 (18%) Query 66 EIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLL 125 ++ E L+ VIGQ++A KS++ AV + + D + +GPTG GKT L Sbjct 504 KLEETLHNRVIGQNEAVKSVSRAVRR------ARVGLKDPNRPIGSFIFLGPTGVGKTEL 557 Query 126 AQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVE 171 ++ LA RI + A S + GYVG D L + ++ Y V Sbjct 558 SKALAEAMFGDESSMIRIDMSEYMEKHAVSRLIGSPPGYVGYDEGGQLTEKVRRHPYSV- 616 Query 172 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 231 I DEI+K +P V LL+ILE + G+ + Sbjct 617 ------ILFDEIEKA-----HPD---------VFNILLQILED--GRLTDGKGKTVNFKN 654 Query 232 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLR 291 I I T+N+ GA IK+ QK +GF + + E E + V+ E L+ Sbjct 655 TIIIMTSNV-----GA-----STIKK---QKSLGFAISDDKIESEYEQMKENVMEE--LK 699 Query 292 FGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSE 351 PEF+ R+ I KL EE L I+ +++ L+ ++ + F++++ Sbjct 700 RSFRPEFLNRIDDIIVFHKLREEDLEKIVA----LMLESVTHRLKNQDINISFDKKSQKF 755 Query 352 IAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 389 +AKK + GAR LR I + D + E + IEK Sbjct 756 LAKKGFDPVYGARPLRRAITKAVEDKLSEEILKGSIEK 793 > sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus subtilis (strain 168) GN=clpC PE=1 SV=1 Length=810 Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 130/290 (45%), Gaps = 58/290 (20%) Query 114 LIGPTGSGKTLLAQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENIL 159 +GPTG GKT LA+ LA RI + +TS + GYVG D L Sbjct 543 FLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQL 602 Query 160 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 + ++ Y V + +DEI+K +P + LL++LE + Sbjct 603 TEKVRRKPYSV-------VLLDEIEKA-----HPDVF---------NILLQVLED--GRL 639 Query 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 279 GR + I I T+N+ GA + +KR K +GF ++ + +D Sbjct 640 TDSKGRTVDFRNTILIMTSNV-----GASE-----LKR---NKYVGFNVQDETQN--HKD 684 Query 280 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 339 + KV+ E L+ PEFI R+ I L+++ L I++ + L K+ K+ + Sbjct 685 MKDKVMGE--LKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQ----D 738 Query 340 VELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIEK 389 + +E + A +++A++ ++ + GAR LR I+ + D + E R +I K Sbjct 739 LSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHK 788 > sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus subtilis (strain 168) GN=clpE PE=1 SV=1 Length=699 Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 92/360 (26%), Positives = 150/360 (42%), Gaps = 77/360 (21%) Query 40 ELCTEIVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS 98 E EIVE++ G +++ + K +E+ L+E VIGQ+ A + +A AV + S Sbjct 375 EHIQEIVEQKTGIPVGKLQADEQTKMKELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKS 434 Query 99 NSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADAT---SLTE-------- 147 ++ + +GPTG GKT L++TLA L F DA ++E Sbjct 435 KNR------PVGSFLFVGPTGVGKTELSKTLADEL---FGTKDAIIRLDMSEYMEKHAVS 485 Query 148 ------AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSG 201 GYVG + L + ++ Y I+ +DEI+K +P Sbjct 486 KIIGSPPGYVGHEEAGQLTEKVRRNPY-------SIVLLDEIEKA-----HPD------- 526 Query 202 EGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQ 261 VQ L+I+E + GR ++ + I T+N GA + Q Sbjct 527 --VQHMFLQIMED--GRLTDSQGRTVSFKDTVIIMTSN-----AGAGE----------KQ 567 Query 262 KVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILT 321 +GF +D+ +E++ L+ D L PEF+ R I L++E LV I++ Sbjct 568 TKVGFQSDDSV--IEEQTLI------DSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVS 619 Query 322 KPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFEL 381 L + + + L +EA +IA+ GAR LR I+ + D M +L Sbjct 620 LLLGELEETLAER----GISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDL 675 > tr|Q899V4|Q899V4_CLOTE Negative regulator of genetic competence mecB OS=Clostridium tetani (strain Massachusetts / E88) GN=mecB PE=4 SV=1 Length=767 Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 88/349 (25%), Positives = 151/349 (43%), Gaps = 71/349 (20%) Query 54 EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNIS 113 ++V K+ K + + L++ +IGQD+A + L+ + + R+ SK ++ Sbjct 457 QKVREKEAEKLLNLEQRLHKRLIGQDKAVRKLSRTIRRN--RLGFKSKK-----RPASFI 509 Query 114 LIGPTGSGKTLLAQTLA-----------RI-LNVPFAIADATSL--TEAGYVGEDVENIL 159 +GPTG GKT L ++LA RI ++ A+ L + GYVG D L Sbjct 510 FVGPTGVGKTELVRSLACELFGDEDSLIRIDMSEYMEKHTASKLIGSPPGYVGYDEGGQL 569 Query 160 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASV 219 + I+ Y V + +DEI+K +P I LL++LE + Sbjct 570 TEKIRRKPYSV-------VLLDEIEKA-----HPDIF---------NMLLQVLED--GRL 606 Query 220 PPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKED 279 GR + I T+N+ G F + IGFG N ++ E+ Sbjct 607 TDNQGRTVFFDNSVIIMTSNL----GTNF-----------KESSIGFGNTN---SIQIEN 648 Query 280 LLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDN 339 + +D L+ PEFI R+ I EKL++E L I+ + + + + L N Sbjct 649 SI-----KDALKETFKPEFINRIDEIVIFEKLNKEELYDII----DIMFDEVSEDLSEKN 699 Query 340 VELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIE 388 +++ F +E I K + K GAR L+ I+ + D + E R++++ Sbjct 700 IKVHFTKEVKDFILKVGYDEKYGARELKRAIQRYIEDEISEQYFRNEVK 748 > tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding subunit ClpC OS=Finegoldia magna (strain ATCC 29328) GN=FMG_0335 PE=3 SV=1 Length=806 Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 85/320 (27%), Positives = 138/320 (43%), Gaps = 74/320 (23%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRI-----NSNSKVDDVELSKSNISLIGPTGSGKTLL 125 L + VIGQD+A S++ A+ KR N N + + +GPTG GKT L Sbjct 495 LKKVVIGQDKAIDSISNAI----KRARVGLKNPNKPI-------GSFVFVGPTGVGKTYL 543 Query 126 AQTLAR-ILNVPFAI--ADATSLTEA-----------GYVGEDVENILLKLIQAADYDVE 171 A+ LA+ + N A+ D T E GYVG D L +++ Y V Sbjct 544 AKKLAKELFNDENAMIRIDMTEYMEKHSVSKLIGSPPGYVGHDDGGQLTDMVRTKPYSV- 602 Query 172 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 231 I DEI+K +P V LL++L+ + GR ++ Sbjct 603 ------ILFDEIEKA-----HPD---------VFNTLLQVLDD--GRLTDSKGRVVNFKD 640 Query 232 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDL-LSKVLPEDLL 290 + I T+NI GA + +E + VIGF N A D+E ++ +K + + Sbjct 641 TVIIMTSNI-----GASE-LE-------SKNVIGF---NTAEDVEVDEYNRNKETINNAM 684 Query 291 RFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALS 350 + PEF+ RL + L++E + I + LV + K +++ + ++E+ L Sbjct 685 KSMFKPEFMNRLDDVIVFSNLNKENVKEIAGLMMDELVDRMAK----NDLIISYDEKILD 740 Query 351 EIAKKAIERKTGARGLRSII 370 + K ++K GAR L +I Sbjct 741 YLVDKGYDKKFGARPLERLI 760 > tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH OS=Finegoldia magna (strain ATCC 29328) GN=ftsH PE=3 SV=1 Length=628 Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/142 (34%), Positives = 69/142 (49%), Gaps = 13/142 (9%) Query 75 VIGQDQAKKSL--AVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARI 132 V GQ++AK +L V + KR N V L K + L+GP G+GKTLLAQ +A Sbjct 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGAV----LPKG-VLLVGPPGTGKTLLAQAVAGE 219 Query 133 LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSEN 192 VPF + E +VG + QAAD KA I++IDEID + ++ + Sbjct 220 AKVPFFSMSGSEFVEM-FVGLGASKVRDLFKQAAD----KA-PCIVFIDEIDAIGKRRDT 273 Query 193 PSITRDVSGEGVQQALLKILEG 214 I+ + E LL ++G Sbjct 274 AGISGNDEREQTLNQLLNEMDG 295 > tr|Q5FM98|Q5FM98_LACAC ATPase OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpC PE=3 SV=1 Length=825 Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 79/327 (24%), Positives = 143/327 (44%), Gaps = 67/327 (20%) Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTL 129 IL++ VIGQD+A ++A A+ S S + D + +GPTG GKT LA+++ Sbjct 515 ILHKRVIGQDKAVSAVARAIRR------SRSGIKDERRPIGSFLFLGPTGVGKTELAKSV 568 Query 130 A--------RILNVPFA-----IADATSLTEA-GYVGEDVENILLKLIQAADYDVEKAEK 175 A ++ + + IA + + A GYVG + L + ++ Y V Sbjct 569 AAAMFGSEDNLIRLDMSEYMDQIASSKLIGSAPGYVGYEEGGQLSEQVRRHPYSV----- 623 Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKIL-EGTVASVPPQGGRKHPHQEFIQ 234 + +DE++K +P + LL++L EG + GRK + I Sbjct 624 --VLLDEVEKA-----HPDVF---------NLLLQVLDEGFMTD---SKGRKVDFRNTII 664 Query 235 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 294 I T+N+ FDG +GF AD +++ + + + + +F Sbjct 665 IMTSNLG--SRSLFDG-----------NAVGFNADK----IDQAKVRQAKVQQAIKQF-F 706 Query 295 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 354 PEF+ R+ ++L ++ L I++ N LV + L+ + L+ AL +I + Sbjct 707 RPEFLNRIDETIVFDELTKKQLRNIVSLLTNKLVVR----LQRKGITLKLSRAALDKIVQ 762 Query 355 KAIERKTGARGLRSIIEGIMLDVMFEL 381 + + GAR L+ I+ + D + E+ Sbjct 763 DGYDPENGARPLKRAIQNDVEDKVAEM 789 > tr|Q5FHW6|Q5FHW6_LACAC ATP-dependent protease OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpE PE=4 SV=1 Length=709 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/349 (25%), Positives = 142/349 (41%), Gaps = 83/349 (24%) Query 37 ECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRI 96 + IE T+I EL +E + D+ K L + VI QD+A + A+ K+I Sbjct 370 QIIEQKTKIPMSELHADEAQKNLDLAKK------LKKNVIDQDRAIDVITDAIAR--KQI 421 Query 97 NSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA--------RILNVPFA-IADATSLTE 147 D + + L GPTG GKT LA+ LA ++ + + D ++ + Sbjct 422 -----FKDSDRPTGSFLLTGPTGVGKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNK 476 Query 148 -----AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGE 202 GYVG L + ++ Y +I DEI+K NP + Sbjct 477 LIGSAPGYVGYGEGGQLTEKVRHQPY-------SLILFDEIEKA-----NPQVF------ 518 Query 203 GVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQK 262 ALL+I++ + GR ++ I I T+N F DG Sbjct 519 ---NALLQIMDD--GRLTDAQGRTVSFKDTILIMTSNAGFSDKLLEDG------------ 561 Query 263 VIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTK 322 ++++ L+S + E+ R PEF+ RL I L E+ + I+ Sbjct 562 -----------KVDQDKLISAL--ENYFR----PEFLNRLDAIVPFNSLTEQDMGKII-- 602 Query 323 PKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 N +K+ +L V +E +EA +A+K ++K GAR LR ++E Sbjct 603 --NIYLKKMSHVLAKKGVTVEVSDEAKEFLAEKGYDKKFGARPLRRVVE 649 > tr|Q899H3|Q899H3_CLOTE ATP-dependent zinc metalloprotease FtsH OS=Clostridium tetani (strain Massachusetts / E88) GN=ftsH PE=3 SV=1 Length=603 Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (53%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKTLLA+ +A VPF + E +VG + QA +K Sbjct 199 LVGPPGTGKTLLAKAIAGEAGVPFFSISGSDFVEM-FVGVGASRVRDLFDQA-----KKN 252 Query 174 EKGIIYIDEIDKVARK 189 + II+IDEID V R+ Sbjct 253 SRCIIFIDEIDAVGRQ 268 > tr|B0S3J0|B0S3J0_FINM2 Chaperone protein ClpB OS=Finegoldia magna (strain ATCC 29328) GN=clpB PE=3 SV=1 Length=861 Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 128/318 (40%), Gaps = 70/318 (22%) Query 69 EILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQT 128 ++L++ V+GQD+A ++ A+ I + S + + + +GPTG GKT LA+ Sbjct 565 KLLHKRVVGQDEAVTAVTDAI------IRARSGLKSLNRPIGSFIFLGPTGVGKTELAKA 618 Query 129 LA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAE 174 L RI + A S GYVG D L + ++ Y V Sbjct 619 LTENMFDDEKNLIRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSV---- 674 Query 175 KGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 234 I DEI+K +P V LL++L+ + GR + I Sbjct 675 ---ILFDEIEKA-----HPD---------VFNILLQVLDD--GRLTDNKGRTVDFKNTII 715 Query 235 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 294 I T+NI G+ D IE G + +D + ++ D L+ Sbjct 716 IMTSNI-----GSMDLIE------------GIDDNGNISDESRNSVM------DELKSRF 752 Query 295 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 354 PEF+ R+ I + L ++ + I+ K + L KQ LE + +E +E A I Sbjct 753 KPEFLNRIDDIVMFKPLTKDDIYKIIEKQVSLLQKQ----LEDRQITIEIDESAEDLIID 808 Query 355 KAIERKTGARGLRSIIEG 372 KA + GAR ++ IE Sbjct 809 KAYDVLYGARPVKRFIES 826 > sp|B2V338|RUVB_CLOBA Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=ruvB PE=3 SV=1 Length=344 Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/129 (33%), Positives = 61/129 (47%), Gaps = 29/129 (22%) Query 63 KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 122 +PQ+I NEY IGQD+ K+ L N + + N K + ++ L GP G GK Sbjct 21 RPQKI----NEY-IGQDKVKERL-----NIFIKAAKNRKE-----ALDHVLLYGPPGLGK 65 Query 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 182 T LA +A+ + I ++ AG D+ IL L DYDV ++IDE Sbjct 66 TTLANIIAKEMTGDLKITSGPAIERAG----DLAAILTTL---KDYDV-------LFIDE 111 Query 183 IDKVARKSE 191 I ++ R E Sbjct 112 IHRLNRSVE 120 > tr|Q891B9|Q891B9_CLOTE ATP-dependent zinc metalloprotease FtsH OS=Clostridium tetani (strain Massachusetts / E88) GN=ftsH PE=3 SV=1 Length=624 Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/147 (33%), Positives = 70/147 (48%), Gaps = 16/147 (11%) Query 75 VIGQDQAKKSLAVAV---YNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLAR 131 V GQ++AK+SL V +N K +K+ L L+GP G+GKTLLA+ +A Sbjct 173 VAGQEEAKESLMEIVDFLHNSDKYTGIGAKLPKGAL------LVGPPGTGKTLLAKAVAG 226 Query 132 ILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSE 191 VPF + E +VG + QA EKA II+IDEID + KS Sbjct 227 EAKVPFFSISGSGFVEM-FVGMGAARVRDLFEQAQ----EKA-PCIIFIDEIDAIG-KSR 279 Query 192 NPSITRDVSGEGVQQALLKILEGTVAS 218 + ++ + E LL ++G +S Sbjct 280 DGHVSGNDEREQTLNQLLAEMDGFDSS 306 > tr|Q5L3T1|Q5L3T1_GEOKA ATP-dependent zinc metalloprotease FtsH OS=Geobacillus kaustophilus (strain HTA426) GN=ftsH PE=3 SV=1 Length=632 Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 112 ISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE 171 + L+GP G+GKTLLA+ +A VPF + E +VG + L + A + Sbjct 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFETA----K 251 Query 172 KAEKGIIYIDEIDKVARK 189 K II+IDEID V R+ Sbjct 252 KNAPCIIFIDEIDAVGRQ 269 > tr|Q81VX5|Q81VX5_BACAN ATP-dependent zinc metalloprotease FtsH OS=Bacillus anthracis GN=ftsH PE=3 SV=1 Length=633 Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (53%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKTLLA+ +A VPF + E +VG + L + A +K Sbjct 200 LVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENA----KKN 253 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V R+ Sbjct 254 APCIIFIDEIDAVGRQ 269 > tr|Q898D1|Q898D1_CLOTE ATP-dependent zinc metallopeptidase OS=Clostridium tetani (strain Massachusetts / E88) GN=CTC_00531 PE=3 SV=1 Length=576 Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/81 (35%), Positives = 41/81 (51%), Gaps = 6/81 (7%) Query 112 ISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE 171 I L G G+GKTLLA+ +A VPF + + YVG I +A ++ Sbjct 184 IILYGEPGTGKTLLAKAIAGEAGVPFYALSGSDFVQV-YVGVGASRIRQLFKKARNH--- 239 Query 172 KAEKGIIYIDEIDKVARKSEN 192 +K +I+IDEID + +K N Sbjct 240 --KKVVIFIDEIDAIGKKRSN 258 > tr|Q5FMA3|Q5FMA3_LACAC ATP-dependent zinc metalloprotease FtsH OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=ftsH PE=3 SV=1 Length=718 Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 110 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 169 S + L GP G+GKTLLA+ +A NVPF + E +VG + ++ + Sbjct 227 SGVLLEGPPGTGKTLLARAVAGEANVPFYSISGSDFVEM-FVG-----VGASRVRDLFSN 280 Query 170 VEKAEKGIIYIDEIDKV 186 +K II+IDEID + Sbjct 281 AKKNAPSIIFIDEIDAI 297 > tr|Q5FLA7|Q5FLA7_LACAC ATP-dependent Clp protease, ATP-binding subunit OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=clpE PE=3 SV=1 Length=728 Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 80/350 (23%), Positives = 148/350 (42%), Gaps = 77/350 (22%) Query 40 ELCTEIVEEELGTE-EEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS 98 ++ +IVEE+ G +++ ++ + Q + L VIGQD+A + +A A+ + RI Sbjct 401 KIMNKIVEEKTGIPVGDIQKQEENQLQNLASDLKSNVIGQDKAVEKVARAIRRN--RIGF 458 Query 99 NSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADAT---SLTE-------- 147 N + + +GPTG GKT LA+ LA+ + F DA ++E Sbjct 459 NKSGRPI----GSFLFVGPTGVGKTELAKQLAKQM---FGSEDAMIRFDMSEYMEQYSVS 511 Query 148 ------AGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSG 201 GYVG + L + ++ Y +I +DEI+K +P + Sbjct 512 KLIGSAPGYVGYEEAGQLTEQVRHNPY-------SLILLDEIEKA-----HPDVL----- 554 Query 202 EGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQ 261 L+IL+ + GR ++ I I T+N A GI+ Sbjct 555 ----NLFLQILDD--GRLTDSQGRTVSFKDTIIIMTSN-------AGQGIK--------N 593 Query 262 KVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILT 321 +GF A+N +D S+ ++ +F PEF+ RL + +L + L+ I+ Sbjct 594 ASVGFTAEN-------DDESSESARNNMSQF-FKPEFLNRLDDVIEFNELTKPDLLEIV- 644 Query 322 KPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 + +++ M++ + ++ A +++ ++ GAR LR I+ Sbjct 645 ---DLMLQNTNNMVKDQGLHIDVTSAAKNKLVEEGFNPALGARPLRRTIQ 691 > sp|Q898C7|CLPB_CLOTE Chaperone protein ClpB OS=Clostridium tetani (strain Massachusetts / E88) GN=clpB PE=3 SV=1 Length=865 Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 76/321 (24%), Positives = 131/321 (41%), Gaps = 77/321 (24%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA 130 L VIGQD+A ++++ AV + + + + D + + +GPTG GKT LA+TL Sbjct 572 LKSRVIGQDEAVEAVSNAV------LRARAGMKDPQKPIGSFIFLGPTGVGKTELAKTLC 625 Query 131 R--------ILNVPFA-IADATSLTE-----AGYVGEDVENILLKLIQAADYDVEKAEKG 176 + I+ + + + S++ GYVG + L + ++ Y V Sbjct 626 KNLFDSEENIIRIDMSEYMEKYSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSV------ 679 Query 177 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 236 I DEI+K + + V L+IL+ + G+ + I I Sbjct 680 -ILFDEIEK--------------AHDDVFNIFLQILDD--GRLTDNKGKTVDFKNCIIIM 722 Query 237 TTNI---LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFG 293 T+NI + DGI++ +K NK ++ K+ RF Sbjct 723 TSNIGSSYLLENKKEDGIDETVK-------------NKVSNALKD------------RFK 757 Query 294 LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 353 PEF+ RL I + L + I+ + ++ + L+ N+ L E A +A Sbjct 758 --PEFLNRLDDIIMFKPLTNREITKII----DIFLQDIENRLKDRNITLIVTENAKELMA 811 Query 354 KKAIERKTGARGLRSIIEGIM 374 K+ + GAR L+ IE I+ Sbjct 812 KEGYDAIYGARPLKRYIENIL 832 > tr|B0S222|B0S222_FINM2 ATP-dependent zinc metalloprotease FtsH OS=Finegoldia magna (strain ATCC 29328) GN=ftsH PE=3 SV=1 Length=631 Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKT L++ +A VPF + E +VG + QA +K Sbjct 201 LVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASRVRDLFEQA-----KKN 254 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V RK Sbjct 255 APCIIFIDEIDAVGRK 270 Lambda K H a alpha 0.315 0.136 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1255727448 Database: proteomes.fasta Posted date: Mar 23, 2017 11:49 PM Number of letters in database: 5,755,958 Number of sequences in database: 19,586 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40