FastQCFastQC Report
Вт 1 дек 2015
trim3.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenametrim3.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3796
Sequences flagged as poor quality0
Sequence length50-100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGCCAAACCTTCAGCCAGAGTTGCAGACAGAGCCATCGTGGCAGCCG70.18440463645943098No Hit
GTGGCAGCCGGAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAAC70.18440463645943098No Hit
CAGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGG60.15806111696522657No Hit
CACCTCCTTAAAGGGTACCTGAGCTCCACGTCTTGGTTTTGTACACCTGC60.15806111696522657No Hit
TGCACCCGCCATTGCCAAACCTTCAGCCAGAGTTGCAGACAGAGCCATCG60.15806111696522657No Hit
GAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAACCCAACTGGAG60.15806111696522657No Hit
AGAACCAGGAAGAGAACATGCAGAAGGCACTAAGCTTCCTGGGCCCCTCA50.13171759747102213No Hit
TACACCTGCTGGATCCTCTTGGCCATTTTTTTCTTTTTCAGCTTGCCTTC50.13171759747102213No Hit
GGAGCCCACAGCTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCC50.13171759747102213No Hit
GGCCACCAGAGCCAGAGTCCCAACACTAGTCCACCACCAAAGCGCCACAA50.13171759747102213No Hit
AAAAAAAAGAATATTACTATGGGCTTTTCTTCTTTTTCTAGGAAAGTATG40.10537407797681769No Hit
TACTATGGGCTTTTCTTCTTTTTCTAGGAAAGTATGTGATGGTGATGGGA40.10537407797681769No Hit
AGGGTGGGGAGGACAGGGGCAGTAATGCCATTTGCCTGCCTGCATTCTCT40.10537407797681769No Hit
TAGCAACTCTCAGCCCCAAAGCCGCACCTGCACCCGCCATTGCCAAACCT40.10537407797681769No Hit
GGTGGCCCTTCCCCACCTCCTTAAAGGGTACCTGAGCTCCGCGTCTTGGT40.10537407797681769No Hit
AAAGGCTGCAGAACCAGGAAGAGAACATGCAGAAGGCACTAAGCTTCCTG40.10537407797681769No Hit
CCTTCCCCACCTCCTTAAAGGGTACCTGAGCTCCGCGTCTTGGTTTTGTA40.10537407797681769No Hit
CCGCATGGGAGAGTGGTGGGAGTTCATAGTCTTTTTGTGGCGCTTTGGTG40.10537407797681769No Hit
CTTGGCCATTTTTTTCTTTTTCAGCTTGCCTTCCAAGTTCTTTCTGTTCT40.10537407797681769No Hit
CTTCTTGCCTGTGGTTCCTTTGTGACCTGGCTGCAACCTTCCTCTCACTG40.10537407797681769No Hit
GCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGGCCACCAGAG40.10537407797681769No Hit
CTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCCACCACCAAAGC40.10537407797681769No Hit
AGGATGGTGGGCCGCATGGGAGAGTGGTGGGAGTTCATAGTCTTTTTGTG40.10537407797681769No Hit
GTACCTTTGGAAGCAAGTCCCTGAGACATTGGTGATCCAACAACAGCTTC40.10537407797681769No Hit
CAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCA40.10537407797681769No Hit
GCCCACAGCTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCCACC40.10537407797681769No Hit
ACTCTGTCTCAAAAGAAGAAAAAAAAAAGAATATTACTATGGGCTTTTCT40.10537407797681769No Hit
GGCGTTGATTTCTGGCATTTTTGAAGGACTCTTCACATTGCACACCAGAT40.10537407797681769No Hit
ATCGTGGCAGCCGGAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGC40.10537407797681769No Hit
AGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGGC40.10537407797681769No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)