LOCUS       NC_007408               7009 bp ss-RNA     linear   VRL 22-MAY-2007
DEFINITION  Alstroemeria virus x, complete genome.
ACCESSION   NC_007408
VERSION     NC_007408.1  GI:75750459
DBLINK      BioProject: PRJNA15687
KEYWORDS    RefSeq.
SOURCE      Alstroemeria virus x
  ORGANISM  Alstroemeria virus x
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Tymovirales; Alphaflexiviridae; Potexvirus.
REFERENCE   1
  AUTHORS   Fuji,S., Shinoda,K., Ikeda,M., Furuya,H., Naito,H. and Fukumoto,F.
  TITLE     Complete nucleotide sequence of the new potexvirus 'Alstroemeria
            virus X'. Brief report
  JOURNAL   Arch. Virol. 150 (11), 2377-2385 (2005)
   PUBMED   15986173
REFERENCE   2  (bases 1 to 7009)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-2005) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 7009)
  AUTHORS   Fuji,S., Furuya,H., Naito,H. and Fukumoto,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2005) Shin-ichi Fuji, Akita Prefectural
            university, Bioresource Sciences; Shimoshinjo, Akita, Akita
            010-0195, Japan (E-mail:sfuji@akita-pu.ac.jp, Tel:81-18-872-1640,
            Fax:81-18-872-1678)
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB206396.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..7009
                     /organism="Alstroemeria virus x"
                     /mol_type="genomic RNA"
                     /db_xref="taxon:316983"
                     /country="Japan"
     gene            98..5038
                     /locus_tag="AVX_gp1"
                     /db_xref="GeneID:5141643"
     CDS             98..5038
                     /locus_tag="AVX_gp1"
                     /note="ORF1"
                     /codon_start=1
                     /product="replicase protein"
                     /protein_id="YP_319827.1"
                     /db_xref="GI:75750460"
                     /db_xref="GeneID:5141643"
                     /translation="MSKIRNVLDKIRDPSVQTAICENAYAQMRPVLKEALVNCPYALT
                     DLEADALENMGISVNPYATQTHTHAACKAIENQMLQIVGHHLPKSKVTFLFLKRSKLR
                     YMRRAAALNDHFMNKNVEPKDFFRYDSETVCANLSAVSTSIAYISDTLHFMTFEELAN
                     LFETSPKLDTLLATVVLPVEALHKRTSLHPALYSINYNKDGFEYIPGNHGGGAYFHPY
                     DTLQWLKVRTLLCNSKHKGFPPFHLTFQMVESLGANHLFIIRRGKFETPLYRTFCRDT
                     YVTFPKIFHPSTANANKPIQKQKAMQLWLYCKSVKAVTERDIYAKIRQVLRTEELELY
                     EPAEVAHIVNYFYFIANLHSITCYEDLLSGSLLKRMTVPIRTAITKFVEVFRGKNDFV
                     KLLDALKWDNFTYSIKPEDMTTKMDSHQVNHLVEEYGIPIKEAEATIAQLHREPELLN
                     DADLDSPPMVDFLGRTTYEPFNYPRTTTPTDPKPAATTADDSASCSKPPNSAAGTSPS
                     PNHTQPEKLKPDAQPTQDSATIPVHVSGWEREPFDYVFHTSQSQQLRGRKAAFLSTRQ
                     DIDYGHDKIRYDTNPWNEILTDFLRTVGFQANAVLIQVYEANAGIPWHRDDEKCYEKD
                     AILTLNFGTATFEFSNGTKLHLTDGCHFIMSGEWLDLKHRVTNCSADRMSLTFRVHKQ
                     DMFGHPIPKTTLVPEQQPEVDAGVDNHNLPKETPAQEPSEASTESGPNTTKPAPFVSQ
                     RQNTRSPEEKPTVTAVPWEAWKPLLNNHGFKADEQQLNPEGFLILPILDVHKVPHSKF
                     PDTVPAKLQDTLTQMKRFPVDITIQHQRAAAYASDIKNNRTGKLLSSMDNKWKASFAY
                     KMQHEDITLTGTVIHGCGGSGKSHAIQQFIRTIPNDNNTITVVTPTVELRNDWSTKLP
                     LSPPEMFKTFEKAITQPCNPVVVFDDYTKMPPGYIEAVCMHHRQIEFVILTGDSKQSV
                     YHEANTEAYISSMIEAVEVFEPFCEFYLNATHRNVKDLANKLGVYSERQGSLKITMAS
                     HHLKQSRIPLLVPSTMKRNAMLDIGHRCMTYAGCQGLTAPKVQILLDQHTQHCSERVL
                     YTALSRAVDSIHFINTGPNSTDYWQKLDSTPYLKAFIDTHRDEKTEMYNSQPADDSPT
                     PVPAPKTHFPPAPSTLLENMVETLPDKEAREIYNKSLGYSNAIQTQDPVVQLFQHQQA
                     KDETLYWATIEARLSISTPEANLREFNLKKDVGDVLFANYAQIMHLPSEPVPFDDRMW
                     EISETEVRNTYLSKPIGNLVNAATRQSPDFNPNKIALFLKSQWVKKPEKLGALKVKPG
                     QTVASFMQETVMLYGTMARYLRKQRQRFQPQNIFINCETTPDHLNEFIKSQWSFTQPA
                     HTNDFTAFDQTQDGAMLQFEVLKAKFFNVPPEIIEGYIYIKLNAEIFLGTLGIMRLSG
                     EGPTFDANTECSIAYNATRFFVDDSVAQVYAGDDMALDRVVQEKPSFKRLEHQLKLTS
                     KPQYPSQTKGDYAEFCGWIFTPSGIMKHSLKMQASIQLQKKINNIAQSARSYALDLKY
                     AYDMGDALQDHLTEAECELHAQSVRDMHLLHQHDVLVNGASSPPHPTQTTSAADIPTG
                     SAKTKKRNLSKRKAKVAKIDSSGDFNFRCPSSPPRQ"
     gene            5067..5771
                     /locus_tag="AVX_gp2"
                     /db_xref="GeneID:5141645"
     CDS             5067..5771
                     /locus_tag="AVX_gp2"
                     /note="ORF2"
                     /codon_start=1
                     /product="triple gene block protein 1"
                     /protein_id="YP_319828.1"
                     /db_xref="GI:75750461"
                     /db_xref="GeneID:5141645"
                     /translation="MALFYLQTLLLNSDFTRTTTPTASPLIIFGTAGCGKTSIIRALA
                     SQFPELHFSSFHPIVLLPNIRKKQHLANPNEATDVLDEFLAGPNPEVRIAKFCDPLQY
                     NCETLPEPHFISETTYRFCPRTCELLNDIFKTTLKSKVLEICKVACVDPYAVDPVGKV
                     IAIEQELFPILSAHGLTVHSPDFLTGQTIPEVSVYTLNLKRAVAEHPHLLFIALTRHS
                     KTLHLFDLNAGPDTTA"
     gene            5746..6078
                     /locus_tag="AVX_gp3"
                     /db_xref="GeneID:5141644"
     CDS             5746..6078
                     /locus_tag="AVX_gp3"
                     /note="ORF3"
                     /codon_start=1
                     /product="triple gene block protein 2"
                     /protein_id="YP_319829.1"
                     /db_xref="GI:75750462"
                     /db_xref="GeneID:5141644"
                     /translation="MPGLTPPPNYENVYKLVALGFICVGIILATKSNHNHHTGDQQHS
                     LPFGGIYRDGTKTVSYFRPSDPITHSNKWLAFSSVITISLIIWLCSKFSPGDRRPLPP
                     VCSHCTSH"
     gene            5903..6202
                     /locus_tag="AVX_gp4"
                     /db_xref="GeneID:5141642"
     CDS             5903..6202
                     /locus_tag="AVX_gp4"
                     /note="ORF4"
                     /codon_start=1
                     /product="triple gene block protein 3"
                     /protein_id="YP_319830.1"
                     /db_xref="GI:75750463"
                     /db_xref="GeneID:5141642"
                     /translation="MAPKLSLTFALLTLSPTLINGWPSHQSSPSASSFGYVLNFLLVI
                     GGLYLLYALTAPPTKAGCIVRVTGESVTIDNCPDTALIMEKFNLAPWNGVKFPKE"
     gene            6240..6932
                     /locus_tag="AVX_gp5"
                     /db_xref="GeneID:5141641"
     CDS             6240..6932
                     /locus_tag="AVX_gp5"
                     /note="ORF5"
                     /codon_start=1
                     /product="coat protein"
                     /protein_id="YP_319831.1"
                     /db_xref="GI:75750464"
                     /db_xref="GeneID:5141641"
                     /translation="MAGENTPPTPPTAPAGSAADLANPNRSPTVSDLAKLNYQSTTTS
                     VATPEEITALGVLFTSAGVDPNSVPLAMWDLARAYADVQSSRSAMLVGSTPSNKSITR
                     QTLARKLDQVNITPRQFCMYFAKVVWNILISSNTAPAGWAKLGYPEECKFAAFDFFDG
                     VLSPAALDPADGLIRQPNTREIQAHSTAKFGALARQRISNGNFVSTLAEVTHGRVGGV
                     NAMYSIEAPPEA"
ORIGIN      