REM -------------------------------------------------------------------- 5W39 REM 5W39 REM STRIDE: Knowledge-based secondary structure assignment 5W39 REM Please cite: D.Frishman & P.Argos, Proteins XX, XXX-XXX, 1995 5W39 REM 5W39 REM Residue accessible surface area calculation 5W39 REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 5W39 REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 5W39 REM 5W39 REM ------------------------ General information ----------------------- 5W39 REM 5W39 HDR UNKNOWN FUNCTION 07-JUN-17 5W39 5W39 CMP MOL_ID: 1; 5W39 CMP MOLECULE: POLYISOPRENOID-BINDING PROTEIN; 5W39 CMP CHAIN: A; 5W39 CMP FRAGMENT: UNP RESIDUES 22-190; 5W39 CMP SYNONYM: YCEI PERIPLASMIC PROTEIN, PROTEIN YCEI, PERIPLASMIC 5W39 CMP ENGINEERED: YES; 5W39 CMP MUTATION: YES 5W39 SRC MOL_ID: 1; 5W39 SRC ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; 5W39 SRC ORGANISM_TAXID: 197; 5W39 SRC GENE: A0L11_08945, A0M64_02260, A0M70_03345, AD53_02580; 5W39 SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); 5W39 SRC EXPRESSION_SYSTEM_TAXID: 469008; 5W39 SRC EXPRESSION_SYSTEM_STRAIN: C41(DE3); 5W39 SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 5W39 SRC EXPRESSION_SYSTEM_PLASMID: PSB3 5W39 AUT T.R.HUBER,C.D.SNOW 5W39 REM 5W39 REM -------------------- Secondary structure summary ------------------- 5W39 REM 5W39 CHN /home/proj/stride/tmp/tmpE2BoObpdb A 5W39 REM 5W39 REM . . . . . 5W39 SEQ 1 MKEYTLDKAHTDVGFKIKHLQISNVKGNFKDYSAVIDFDPASAEFKKLDV 50 5W39 STR TTTTT EE EEEEEEEETTTTEEEEEEE 5W39 REM 5W39 REM . . . . . 5W39 SEQ 51 TIKIASVNTENQTRDNHLQQDDFFKAKKYPDMTFTMKKYEKIDNEKGKMT 100 5W39 STR EEEGGGEE HHHHHHHHTTTTTTTTTTTEEEEEEEEEEEEETTEEEEE 5W39 REM 5W39 REM . . . . . 5W39 SEQ 101 GTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIKRSDFKFATST 150 5W39 STR EEEEETTEEEEEEEEEEEEEEEETTTT EEEEEEEEEEEEGGGGTTTTTT 5W39 REM 5W39 REM . . 5W39 SEQ 151 STITLSDDINLCIEVEANEKE 171 5W39 STR TTTTTT EEEEEEEEEEE 5W39 REM 5W39 REM 5W39 REM 5W39 LOC AlphaHelix GLN 82 A GLN 89 A 5W39 LOC 310Helix ILE 74 A SER 76 A 5W39 LOC 310Helix ARG 161 A PHE 164 A 5W39 LOC Strand ASN 48 A PHE 49 A 5W39 LOC Strand TYR 52 A ASP 59 A 5W39 LOC Strand GLU 64 A LYS 73 A 5W39 LOC Strand VAL 77 A ASN 78 A 5W39 LOC Strand ASP 101 A ASP 113 A 5W39 LOC Strand LYS 116 A ILE 125 A 5W39 LOC Strand VAL 128 A LYS 143 A 5W39 LOC Strand GLU 149 A LYS 160 A 5W39 LOC Strand ASP 178 A ASN 188 A 5W39 LOC TurnI ASP 27 A HIS 30 A 5W39 LOC TurnIV LYS 28 A THR 31 A 5W39 LOC TurnIV ASP 59 A SER 62 A 5W39 LOC TurnI PRO 60 A ALA 63 A 5W39 LOC TurnI GLN 90 A PHE 93 A 5W39 LOC TurnIV ASP 91 A PHE 94 A 5W39 LOC TurnIV LYS 95 A LYS 98 A 5W39 LOC TurnI ALA 96 A TYR 99 A 5W39 LOC TurnVIII LYS 97 A PRO 100 A 5W39 LOC TurnI ASP 113 A LYS 116 A 5W39 LOC TurnIV THR 124 A GLY 127 A 5W39 LOC TurnI' ILE 125 A VAL 128 A 5W39 LOC TurnI GLY 144 A GLY 147 A 5W39 LOC TurnIV LYS 165 A THR 168 A 5W39 LOC TurnI ALA 167 A THR 170 A 5W39 LOC TurnIV SER 171 A THR 174 A 5W39 LOC TurnI THR 172 A LEU 175 A 5W39 LOC TurnVIII ILE 173 A SER 176 A 5W39 REM 5W39 REM --------------- Detailed secondary structure assignment------------- 5W39 REM 5W39 REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 5W39 ASG MET A 21 1 C Coil 360.00 163.76 190.5 5W39 ASG LYS A 22 2 C Coil -135.08 155.70 168.5 5W39 ASG GLU A 23 3 C Coil -109.87 139.95 177.1 5W39 ASG TYR A 24 4 C Coil -126.94 169.46 202.8 5W39 ASG THR A 25 5 C Coil -137.16 128.95 133.6 5W39 ASG LEU A 26 6 C Coil -55.11 148.57 112.3 5W39 ASG ASP A 27 7 T Turn -102.15 99.52 88.1 5W39 ASG LYS A 28 8 T Turn -53.89 -26.69 176.5 5W39 ASG ALA A 29 9 T Turn -75.72 -25.70 81.0 5W39 ASG HIS A 30 10 T Turn -120.71 36.04 163.8 5W39 ASG THR A 31 11 T Turn -125.76 141.11 67.6 5W39 ASG ASP A 32 12 C Coil -135.90 114.34 147.6 5W39 ASG VAL A 33 13 C Coil -92.86 89.82 138.1 5W39 ASG GLY A 34 14 C Coil -111.26 163.42 53.0 5W39 ASG PHE A 35 15 C Coil -156.37 155.54 185.0 5W39 ASG LYS A 36 16 C Coil -139.31 132.51 209.9 5W39 ASG ILE A 37 17 C Coil -141.74 139.86 148.0 5W39 ASG LYS A 38 18 C Coil -86.11 132.07 206.9 5W39 ASG HIS A 39 19 C Coil -134.26 160.35 137.1 5W39 ASG LEU A 40 20 C Coil -91.47 146.98 167.1 5W39 ASG GLN A 41 21 C Coil -139.47 127.07 161.4 5W39 ASG ILE A 42 22 C Coil -84.56 139.79 173.8 5W39 ASG SER A 43 23 C Coil -153.18 154.69 102.9 5W39 ASG ASN A 44 24 C Coil -89.32 122.21 147.0 5W39 ASG VAL A 45 25 C Coil -80.67 119.59 74.9 5W39 ASG LYS A 46 26 C Coil -106.08 147.54 77.8 5W39 ASG GLY A 47 27 C Coil -168.12 157.25 56.3 5W39 ASG ASN A 48 28 E Strand -132.17 -168.76 91.6 5W39 ASG PHE A 49 29 E Strand -131.13 124.31 50.8 5W39 ASG LYS A 50 30 C Coil -71.17 -27.67 82.3 5W39 ASG ASP A 51 31 C Coil -127.58 120.06 85.4 5W39 ASG TYR A 52 32 E Strand -162.97 159.89 146.0 5W39 ASG SER A 53 33 E Strand -131.46 155.08 71.5 5W39 ASG ALA A 54 34 E Strand -142.44 154.69 48.7 5W39 ASG VAL A 55 35 E Strand -112.43 108.53 72.7 5W39 ASG ILE A 56 36 E Strand -110.16 112.06 55.3 5W39 ASG ASP A 57 37 E Strand -111.11 118.11 79.7 5W39 ASG PHE A 58 38 E Strand -141.59 140.38 37.1 5W39 ASG ASP A 59 39 E Strand -111.31 100.29 60.6 5W39 ASG PRO A 60 40 T Turn -60.53 -27.96 54.4 5W39 ASG ALA A 61 41 T Turn -54.77 -40.47 95.7 5W39 ASG SER A 62 42 T Turn -115.25 -2.23 29.6 5W39 ASG ALA A 63 43 T Turn 46.36 49.42 7.6 5W39 ASG GLU A 64 44 E Strand -119.54 139.82 60.7 5W39 ASG PHE A 65 45 E Strand -84.27 145.49 7.2 5W39 ASG LYS A 66 46 E Strand -113.86 -35.12 127.8 5W39 ASG LYS A 67 47 E Strand -155.33 132.68 92.7 5W39 ASG LEU A 68 48 E Strand -141.29 115.02 3.8 5W39 ASG ASP A 69 49 E Strand -133.87 121.51 41.4 5W39 ASG VAL A 70 50 E Strand -127.59 141.34 24.9 5W39 ASG THR A 71 51 E Strand -130.03 133.46 47.2 5W39 ASG ILE A 72 52 E Strand -125.06 134.37 26.1 5W39 ASG LYS A 73 53 E Strand -88.33 104.71 82.8 5W39 ASG ILE A 74 54 G 310Helix -47.84 -42.00 2.2 5W39 ASG ALA A 75 55 G 310Helix -52.82 -21.16 73.4 5W39 ASG SER A 76 56 G 310Helix -93.43 6.22 22.0 5W39 ASG VAL A 77 57 E Strand -49.48 144.05 14.9 5W39 ASG ASN A 78 58 E Strand -145.40 105.57 44.2 5W39 ASG THR A 79 59 C Coil -111.78 29.30 15.9 5W39 ASG GLU A 80 60 C Coil 48.75 53.42 156.7 5W39 ASG ASN A 81 61 C Coil -173.95 109.75 60.8 5W39 ASG GLN A 82 62 H AlphaHelix -55.77 -51.50 137.5 5W39 ASG THR A 83 63 H AlphaHelix -65.81 -29.22 110.4 5W39 ASG ARG A 84 64 H AlphaHelix -76.32 -46.67 82.3 5W39 ASG ASP A 85 65 H AlphaHelix -49.12 -49.16 15.2 5W39 ASG ASN A 86 66 H AlphaHelix -58.19 -47.87 79.8 5W39 ASG HIS A 87 67 H AlphaHelix -61.43 -32.30 85.9 5W39 ASG LEU A 88 68 H AlphaHelix -63.87 -32.76 24.5 5W39 ASG GLN A 89 69 H AlphaHelix -60.29 -27.84 37.1 5W39 ASG GLN A 90 70 T Turn -69.34 173.78 98.1 5W39 ASG ASP A 91 71 T Turn -57.09 -24.48 127.2 5W39 ASG ASP A 92 72 T Turn -98.50 -0.64 58.5 5W39 ASG PHE A 93 73 T Turn -123.88 -114.17 32.7 5W39 ASG PHE A 94 74 T Turn -72.56 -29.69 21.3 5W39 ASG LYS A 95 75 T Turn 56.41 49.10 74.4 5W39 ASG ALA A 96 76 T Turn -51.70 -29.22 15.2 5W39 ASG LYS A 97 77 T Turn -54.88 -59.12 109.1 5W39 ASG LYS A 98 78 T Turn -74.29 -37.69 135.8 5W39 ASG TYR A 99 79 T Turn -129.94 84.77 79.1 5W39 ASG PRO A 100 80 T Turn -74.56 -18.91 62.4 5W39 ASG ASP A 101 81 E Strand -129.97 149.83 58.5 5W39 ASG MET A 102 82 E Strand -111.54 141.00 17.0 5W39 ASG THR A 103 83 E Strand -120.14 138.19 41.7 5W39 ASG PHE A 104 84 E Strand -122.08 132.27 12.6 5W39 ASG THR A 105 85 E Strand -129.49 112.99 61.5 5W39 ASG MET A 106 86 E Strand -62.72 132.11 23.9 5W39 ASG LYS A 107 87 E Strand -109.44 -15.57 135.0 5W39 ASG LYS A 108 88 E Strand -169.08 125.82 217.0 5W39 ASG TYR A 109 89 E Strand -114.40 125.23 27.8 5W39 ASG GLU A 110 90 E Strand -112.97 105.76 79.9 5W39 ASG LYS A 111 91 E Strand -60.23 133.53 79.9 5W39 ASG ILE A 112 92 E Strand -97.32 -63.20 116.1 5W39 ASG ASP A 113 93 E Strand -138.58 -159.74 71.3 5W39 ASG ASN A 114 94 T Turn -76.21 -5.22 101.4 5W39 ASG GLU A 115 95 T Turn -108.45 -10.16 126.0 5W39 ASG LYS A 116 96 E Strand -149.18 134.73 96.8 5W39 ASG GLY A 117 97 E Strand -161.34 174.26 1.6 5W39 ASG LYS A 118 98 E Strand -109.47 118.01 89.4 5W39 ASG MET A 119 99 E Strand -103.41 125.61 0.0 5W39 ASG THR A 120 100 E Strand -109.07 131.63 23.3 5W39 ASG GLY A 121 101 E Strand -158.61 173.64 0.0 5W39 ASG THR A 122 102 E Strand -108.09 118.80 32.4 5W39 ASG LEU A 123 103 E Strand -97.76 137.96 9.0 5W39 ASG THR A 124 104 E Strand -124.91 115.64 29.3 5W39 ASG ILE A 125 105 E Strand -119.71 124.32 7.4 5W39 ASG ALA A 126 106 T Turn 41.65 53.95 25.8 5W39 ASG GLY A 127 107 T Turn 72.80 0.89 53.9 5W39 ASG VAL A 128 108 E Strand -110.47 132.97 48.4 5W39 ASG SER A 129 109 E Strand -117.53 134.29 67.8 5W39 ASG LYS A 130 110 E Strand -144.74 144.17 89.9 5W39 ASG ASP A 131 111 E Strand -79.29 126.30 72.8 5W39 ASG ILE A 132 112 E Strand -118.44 161.10 14.5 5W39 ASG VAL A 133 113 E Strand -111.24 130.14 70.3 5W39 ASG LEU A 134 114 E Strand -114.07 148.65 4.4 5W39 ASG ASP A 135 115 E Strand -91.75 111.19 81.2 5W39 ASG ALA A 136 116 E Strand -81.56 129.27 2.5 5W39 ASG GLU A 137 117 E Strand -128.52 99.83 88.9 5W39 ASG ILE A 138 118 E Strand -75.97 95.36 11.2 5W39 ASG GLY A 139 119 E Strand -96.60 40.21 68.1 5W39 ASG GLY A 140 120 E Strand 136.92 117.02 40.4 5W39 ASG VAL A 141 121 E Strand -127.84 119.11 65.0 5W39 ASG ALA A 142 122 E Strand -145.93 162.00 38.0 5W39 ASG LYS A 143 123 E Strand -95.88 132.65 146.9 5W39 ASG GLY A 144 124 T Turn -78.76 -176.39 14.3 5W39 ASG LYS A 145 125 T Turn -28.77 -56.14 176.5 5W39 ASG ASP A 146 126 T Turn -87.33 1.66 121.1 5W39 ASG GLY A 147 127 T Turn 78.76 2.49 50.0 5W39 ASG LYS A 148 128 C Coil -96.46 142.48 96.4 5W39 ASG GLU A 149 129 E Strand -56.24 145.00 42.3 5W39 ASG LYS A 150 130 E Strand -133.38 163.77 75.6 5W39 ASG ILE A 151 131 E Strand -144.91 153.41 22.9 5W39 ASG GLY A 152 132 E Strand -127.73 138.96 18.9 5W39 ASG PHE A 153 133 E Strand -157.15 160.31 7.3 5W39 ASG SER A 154 134 E Strand -117.96 144.47 10.6 5W39 ASG LEU A 155 135 E Strand -122.66 129.37 4.0 5W39 ASG ASN A 156 136 E Strand -148.24 151.54 52.9 5W39 ASG GLY A 157 137 E Strand 177.53 168.85 13.7 5W39 ASG LYS A 158 138 E Strand -109.14 130.93 63.0 5W39 ASG ILE A 159 139 E Strand -119.94 156.06 10.4 5W39 ASG LYS A 160 140 E Strand -101.29 119.29 102.2 5W39 ASG ARG A 161 141 G 310Helix -36.18 -44.19 11.9 5W39 ASG SER A 162 142 G 310Helix -69.87 -24.25 61.5 5W39 ASG ASP A 163 143 G 310Helix -70.79 -24.19 70.1 5W39 ASG PHE A 164 144 G 310Helix -106.59 11.69 3.4 5W39 ASG LYS A 165 145 T Turn 39.42 37.36 158.6 5W39 ASG PHE A 166 146 T Turn -91.26 134.45 21.5 5W39 ASG ALA A 167 147 T Turn 44.45 46.13 6.7 5W39 ASG THR A 168 148 T Turn -58.96 -19.32 101.3 5W39 ASG SER A 169 149 T Turn -84.22 -22.76 94.6 5W39 ASG THR A 170 150 T Turn -78.90 117.58 29.2 5W39 ASG SER A 171 151 T Turn -53.07 144.32 57.4 5W39 ASG THR A 172 152 T Turn -65.49 -14.64 82.3 5W39 ASG ILE A 173 153 T Turn -66.12 -54.03 151.1 5W39 ASG THR A 174 154 T Turn -66.45 -43.37 122.9 5W39 ASG LEU A 175 155 T Turn -132.87 125.88 60.4 5W39 ASG SER A 176 156 T Turn -58.05 143.65 63.5 5W39 ASG ASP A 177 157 C Coil -62.65 -26.77 29.2 5W39 ASG ASP A 178 158 E Strand -92.07 129.37 89.4 5W39 ASG ILE A 179 159 E Strand -112.56 135.85 57.7 5W39 ASG ASN A 180 160 E Strand -103.84 114.39 127.8 5W39 ASG LEU A 181 161 E Strand -87.85 128.39 36.0 5W39 ASG CYS A 182 162 E Strand -130.24 104.87 84.0 5W39 ASG ILE A 183 163 E Strand -101.98 112.21 66.8 5W39 ASG GLU A 184 164 E Strand -109.81 113.61 149.3 5W39 ASG VAL A 185 165 E Strand -121.38 130.04 33.2 5W39 ASG GLU A 186 166 E Strand -107.10 140.76 92.6 5W39 ASG ALA A 187 167 E Strand -156.20 139.67 21.0 5W39 ASG ASN A 188 168 E Strand -110.79 150.47 132.5 5W39 ASG GLU A 189 169 C Coil -59.95 158.01 112.9 5W39 ASG LYS A 190 170 C Coil -83.98 -178.13 181.8 5W39 ASG GLU A 191 171 C Coil 54.24 360.00 135.3 5W39