TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= YBEY_ECOLI P0A898 RecName: Full=Putative metalloprotease ybeY;
EC=3.4.24.-;
         (155 letters)

Database: xc 
           460 sequences; 5,103,728 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE012341 AE008922 |AE012341| Xanthomonas campestris pv. campestr...   130   9e-32

>AE012341 AE008922 |AE012341| Xanthomonas campestris pv. campestris
            str. ATCC 33913,  section 249 of 460 of the complete
            genome.
          Length = 10478

 Score =  130 bits (326), Expect = 9e-32
 Identities = 68/143 (47%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
 Frame = +3

Query: 16   SGLPEESQFQTWLNAVIPQFQEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSFPFEVP 75
            +GLP    F+ W+ A +     E+++ +RVVD  E  SLN  YRGKD  TNVLSFP E+P
Sbjct: 1149 TGLPSSVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAEMP 1328

Query: 76   PGM----EMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHXXXXXXX 131
             G+    +M LLGDLVIC  VV +EA EQGK L AH+AH+ VHG+LHLLG+DH       
Sbjct: 1329 QGLPKGVKMPLLGDLVICAPVVAREAAEQGKSLSAHYAHLTVHGTLHLLGWDHEDDKEAD 1508

Query: 132  XXXXXXXXXXXALGYEDPYIAEK 154
                        LG +DPY  E+
Sbjct: 1509 AMEQLEREILAELGIDDPYAGER 1577


  Database: xc
    Posted date:  Nov 3, 2008  2:24 AM
  Number of letters in database: 5,103,728
  Number of sequences in database:  460
  
Lambda     K      H
   0.316    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 460
Number of Hits to DB: 808,362
Number of extensions: 10309
Number of successful extensions: 47
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,701,242
Length adjustment: 79
Effective length of query: 76
Effective length of database: 1,664,902
Effective search space: 126532552
Effective search space used: 126532552
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)