Nucleic acid sequence Maximum Likelihood method, version 3.6b Data set # 1: Empirical Base Frequencies: A 0.24170 C 0.25242 G 0.26248 T(U) 0.24340 Transition/transversion ratio = 2.000000 +---------------F +---------3 +--2 +------------------E | | +---------------1 +-------------C | | | +---------D | 4-------------------------B | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -9985.47193 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.73088 ( 0.58252, 0.87924) ** 4 1 0.53795 ( 0.39685, 0.67904) ** 1 2 0.08396 ( 0.02414, 0.14385) ** 2 3 0.32791 ( 0.23949, 0.41625) ** 3 F 0.52693 ( 0.43340, 0.62046) ** 3 E 0.62535 ( 0.52213, 0.72863) ** 2 C 0.45189 ( 0.37708, 0.52670) ** 1 D 0.30872 ( 0.24310, 0.37431) ** 4 B 0.86557 ( 0.70041, 1.03081) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 2: Empirical Base Frequencies: A 0.23869 C 0.26353 G 0.25359 T(U) 0.24418 Transition/transversion ratio = 2.000000 +---------------F +--------3 | +-----------------E +-----------2 | | +-----------D | +--1 | +--------------C | 4---------------------------B | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -9997.03480 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.83526 ( 0.67146, 0.99904) ** 4 2 0.40312 ( 0.26540, 0.54091) ** 2 3 0.27834 ( 0.18958, 0.36711) ** 3 F 0.51327 ( 0.42165, 0.60478) ** 3 E 0.60016 ( 0.50049, 0.69993) ** 2 1 0.08150 ( 0.01191, 0.15100) ** 1 D 0.39087 ( 0.31883, 0.46280) ** 1 C 0.50322 ( 0.42201, 0.58443) ** 4 B 0.91818 ( 0.73915, 1.09731) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 3: Empirical Base Frequencies: A 0.23621 C 0.26118 G 0.25242 T(U) 0.25020 Transition/transversion ratio = 2.000000 +------------C +---------------1 | | +------------D | +--3 | | +--------------------E | +--------4 | +--------------F | 2-----------------------B | +------------------A remember: this is an unrooted tree! Ln Likelihood = -10010.19486 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.63235 ( 0.50533, 0.75946) ** 2 1 0.52635 ( 0.39184, 0.66083) ** 1 C 0.41839 ( 0.34207, 0.49471) ** 1 3 0.07362 ( 0.01510, 0.13208) ** 3 D 0.42456 ( 0.34968, 0.49939) ** 3 4 0.30190 ( 0.21445, 0.38943) ** 4 E 0.70454 ( 0.59145, 0.81773) ** 4 F 0.49210 ( 0.40073, 0.58348) ** 2 B 0.77671 ( 0.63367, 0.91966) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 4: Empirical Base Frequencies: A 0.23163 C 0.26993 G 0.26261 T(U) 0.23582 Transition/transversion ratio = 2.000000 +--------------------B | | +--------------C | +--1 | | | +------------------E 4----------------3 +------------2 | | +------------F | | | +----------D | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10017.94847 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.76698 ( 0.61833, 0.91571) ** 4 B 0.67645 ( 0.53800, 0.81487) ** 4 3 0.56347 ( 0.41751, 0.70955) ** 3 1 0.09022 ( 0.02341, 0.15702) ** 1 C 0.48603 ( 0.40253, 0.56946) ** 1 2 0.42928 ( 0.32614, 0.53242) ** 2 E 0.60937 ( 0.50863, 0.71011) ** 2 F 0.42841 ( 0.34340, 0.51335) ** 3 D 0.35894 ( 0.28394, 0.43402) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 5: Empirical Base Frequencies: A 0.24183 C 0.25529 G 0.26013 T(U) 0.24275 Transition/transversion ratio = 2.000000 +---------------------------B | | +------------D | | 1-------------------4 +----------------E | | +-----------3 | +---2 +-------------F | | | +-------------C | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10091.75491 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.74714 ( 0.57426, 0.92010) ** 1 B 0.90897 ( 0.71766, 1.10026) ** 1 4 0.66005 ( 0.47421, 0.84581) ** 4 D 0.44621 ( 0.35472, 0.53769) ** 4 2 0.14568 ( 0.06268, 0.22857) ** 2 3 0.38805 ( 0.28743, 0.48872) ** 3 E 0.56898 ( 0.47276, 0.66521) ** 3 F 0.46536 ( 0.37763, 0.55297) ** 2 C 0.45602 ( 0.36992, 0.54205) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 6: Empirical Base Frequencies: A 0.24954 C 0.26092 G 0.25961 T(U) 0.22993 Transition/transversion ratio = 2.000000 +------------------------B | | +------------------F | +------4 | | +------------------E 3------------1 | | +-------------D | +--2 | +-------------C | +--------------------------A remember: this is an unrooted tree! Ln Likelihood = -10050.91340 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.87741 ( 0.70022, 1.05456) ** 3 B 0.82051 ( 0.65444, 0.98669) ** 3 1 0.42893 ( 0.28665, 0.57122) ** 1 4 0.24102 ( 0.14955, 0.33250) ** 4 F 0.62484 ( 0.51707, 0.73252) ** 4 E 0.62351 ( 0.51571, 0.73129) ** 1 2 0.09588 ( 0.02275, 0.16896) ** 2 D 0.43650 ( 0.35985, 0.51316) ** 2 C 0.45364 ( 0.37597, 0.53135) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 7: Empirical Base Frequencies: A 0.21529 C 0.26484 G 0.27216 T(U) 0.24771 Transition/transversion ratio = 2.000000 +-------------------------B | | +------------D 3------------2 | | +------------C | +---1 | | +---------------F | +----------4 | +----------------E | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -10025.89782 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.84180 ( 0.67536, 1.00826) ** 3 B 0.84265 ( 0.67558, 1.00961) ** 3 2 0.43317 ( 0.29241, 0.57381) ** 2 D 0.43575 ( 0.35117, 0.52034) ** 2 1 0.13354 ( 0.06050, 0.20653) ** 1 C 0.43058 ( 0.35079, 0.51036) ** 1 4 0.37226 ( 0.27544, 0.46907) ** 4 F 0.52092 ( 0.42943, 0.61251) ** 4 E 0.53619 ( 0.44370, 0.62863) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 8: Empirical Base Frequencies: A 0.24654 C 0.25712 G 0.26510 T(U) 0.23124 Transition/transversion ratio = 2.000000 +------------D +-------------------2 | | +--------------C | +--4 | | +---------------F | +---------3 | +----------------E | 1------------------------B | +---------------------------A remember: this is an unrooted tree! Ln Likelihood = -10072.14711 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.91138 ( 0.71936, 1.10345) ** 1 2 0.67353 ( 0.48301, 0.86404) ** 2 D 0.40783 ( 0.32708, 0.48859) ** 2 4 0.09369 ( 0.02199, 0.16532) ** 4 C 0.48077 ( 0.39748, 0.56397) ** 4 3 0.32882 ( 0.23792, 0.41972) ** 3 F 0.52230 ( 0.43081, 0.61391) ** 3 E 0.55122 ( 0.45667, 0.64570) ** 1 B 0.82252 ( 0.63851, 1.00645) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 9: Empirical Base Frequencies: A 0.24693 C 0.25163 G 0.27621 T(U) 0.22523 Transition/transversion ratio = 2.000000 +----------------------B | | +------------C | +--4 | | +------------D 1---------------2 | | +-------------F | +--------3 | +-----------------E | +---------------------------A remember: this is an unrooted tree! Ln Likelihood = -10011.68139 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.93544 ( 0.74861, 1.12236) ** 1 B 0.76299 ( 0.60005, 0.92597) ** 1 2 0.52610 ( 0.37162, 0.68050) ** 2 4 0.06846 ( 0.00150, 0.13543) * 4 C 0.44707 ( 0.37251, 0.52155) ** 4 D 0.42243 ( 0.35004, 0.49483) ** 2 3 0.28474 ( 0.19797, 0.37142) ** 3 F 0.45468 ( 0.37196, 0.53730) ** 3 E 0.60268 ( 0.50590, 0.69946) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 10: Empirical Base Frequencies: A 0.22824 C 0.26118 G 0.26810 T(U) 0.24248 Transition/transversion ratio = 2.000000 +-----------C +----4 | | +--------------F +------------1 +-----------2 | | +--------------E | | | +---------D | 3------------------------------------B | +----------------------------A remember: this is an unrooted tree! Ln Likelihood = -10028.07603 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.97496 ( 0.76773, 1.18221) ** 3 1 0.42376 ( 0.25853, 0.58899) ** 1 4 0.14310 ( 0.07625, 0.21006) ** 4 C 0.39293 ( 0.32122, 0.46471) ** 4 2 0.39225 ( 0.29810, 0.48646) ** 2 F 0.50486 ( 0.41718, 0.59248) ** 2 E 0.50421 ( 0.41731, 0.59124) ** 1 D 0.32012 ( 0.24929, 0.39095) ** 3 B 1.20854 ( 0.95237, 1.46476) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 11: Empirical Base Frequencies: A 0.23503 C 0.25386 G 0.26863 T(U) 0.24248 Transition/transversion ratio = 2.000000 +------------------------B | | +----------------F | +---------2 | | +-----------------E 4--------------3 | | +----------------C | +--1 | +----------D | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10049.63123 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.77371 ( 0.62105, 0.92637) ** 4 B 0.81422 ( 0.65340, 0.97499) ** 4 3 0.48256 ( 0.34245, 0.62278) ** 3 2 0.32602 ( 0.23040, 0.42165) ** 2 F 0.57109 ( 0.46999, 0.67225) ** 2 E 0.60103 ( 0.49694, 0.70506) ** 3 1 0.05087 ( zero, 0.12161) 1 C 0.56282 ( 0.47536, 0.65035) ** 1 D 0.36697 ( 0.29612, 0.43776) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 12: Empirical Base Frequencies: A 0.24771 C 0.24732 G 0.25765 T(U) 0.24732 Transition/transversion ratio = 2.000000 +------------C +--3 | | +-----------------E +--------------2 +----------4 | | +-------------F | | | +---------D | 1------------------------B | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -9939.69408 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.79272 ( 0.63832, 0.94718) ** 1 2 0.48236 ( 0.34978, 0.61498) ** 2 3 0.06735 ( 0.01238, 0.12240) ** 3 C 0.41360 ( 0.34473, 0.48259) ** 3 4 0.37441 ( 0.28740, 0.46135) ** 4 E 0.57759 ( 0.48464, 0.67050) ** 4 F 0.44108 ( 0.35976, 0.52231) ** 2 D 0.31085 ( 0.24840, 0.37330) ** 1 B 0.83068 ( 0.67095, 0.99052) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 13: Empirical Base Frequencies: A 0.23137 C 0.25569 G 0.27281 T(U) 0.24013 Transition/transversion ratio = 2.000000 +--------------------------B | | +-------------F | +--------4 | +---1 +------------------E | | | 2------------3 +------------C | | | +--------D | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -9913.38386 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.79652 ( 0.64494, 0.94811) ** 2 B 0.88147 ( 0.71555, 1.04737) ** 2 3 0.41269 ( 0.28742, 0.53786) ** 3 1 0.11530 ( 0.05682, 0.17379) ** 1 4 0.29202 ( 0.21196, 0.37205) ** 4 F 0.46765 ( 0.38491, 0.55031) ** 4 E 0.60983 ( 0.51371, 0.70597) ** 1 C 0.43975 ( 0.36758, 0.51187) ** 3 D 0.28142 ( 0.21907, 0.34388) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 14: Empirical Base Frequencies: A 0.23490 C 0.26092 G 0.25987 T(U) 0.24431 Transition/transversion ratio = 2.000000 +-----------------------B | | +----------D 4----------------1 | | +-------------C | +--3 | | +------------F | +---------2 | +----------------E | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -9975.77058 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.79013 ( 0.63085, 0.94948) ** 4 B 0.80392 ( 0.64219, 0.96568) ** 4 1 0.55161 ( 0.40291, 0.70031) ** 1 D 0.35860 ( 0.28732, 0.42990) ** 1 3 0.08955 ( 0.02705, 0.15196) ** 3 C 0.43934 ( 0.36493, 0.51371) ** 3 2 0.31229 ( 0.23061, 0.39398) ** 2 F 0.43263 ( 0.35415, 0.51105) ** 2 E 0.56744 ( 0.47639, 0.65844) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 15: Empirical Base Frequencies: A 0.23569 C 0.26353 G 0.25477 T(U) 0.24601 Transition/transversion ratio = 2.000000 +-------------------------------B | | +---------------C | +--4 | | | +---------------F 1-----------------2 +-----------3 | | +-----------------E | | | +----------D | +--------------------A remember: this is an unrooted tree! Ln Likelihood = -10071.26863 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.69287 ( 0.53090, 0.85482) ** 1 B 1.05730 ( 0.84005, 1.27452) ** 1 2 0.60536 ( 0.43920, 0.77157) ** 2 4 0.06099 ( zero, 0.12576) * 4 C 0.50927 ( 0.42531, 0.59323) ** 4 3 0.38127 ( 0.28513, 0.47750) ** 3 F 0.51771 ( 0.42364, 0.61171) ** 3 E 0.57851 ( 0.47898, 0.67813) ** 2 D 0.35168 ( 0.27931, 0.42409) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 16: Empirical Base Frequencies: A 0.24366 C 0.25922 G 0.25229 T(U) 0.24484 Transition/transversion ratio = 2.000000 +------------D +--2 | +---------------C +------------1 | | +----------------F | +----------4 | +------------------E | 3----------------------B | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -10082.55717 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.83154 ( 0.67188, 0.99128) ** 3 1 0.42144 ( 0.28624, 0.55664) ** 1 2 0.09153 ( 0.01168, 0.17150) ** 2 D 0.41242 ( 0.33564, 0.48926) ** 2 C 0.52310 ( 0.43693, 0.60928) ** 1 4 0.36420 ( 0.25631, 0.47213) ** 4 F 0.56433 ( 0.45821, 0.67046) ** 4 E 0.63415 ( 0.52218, 0.74620) ** 3 B 0.77140 ( 0.61998, 0.92289) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 17: Empirical Base Frequencies: A 0.24680 C 0.25634 G 0.25176 T(U) 0.24510 Transition/transversion ratio = 2.000000 +------------------F +------2 | +-----------------E +--------------1 | | +-----------D | +--4 | +---------------C | 3--------------------------B | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10032.76743 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.71114 ( 0.56476, 0.85749) ** 3 1 0.48504 ( 0.34443, 0.62573) ** 1 2 0.21214 ( 0.13074, 0.29365) ** 2 F 0.62624 ( 0.52184, 0.73073) ** 2 E 0.59838 ( 0.49712, 0.69960) ** 1 4 0.06448 ( 0.00117, 0.12781) * 4 D 0.38638 ( 0.31534, 0.45742) ** 4 C 0.52754 ( 0.44460, 0.61055) ** 3 B 0.89916 ( 0.72953, 1.06885) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 18: Empirical Base Frequencies: A 0.24889 C 0.24902 G 0.25556 T(U) 0.24654 Transition/transversion ratio = 2.000000 +-------------------E +----------4 +--1 +---------------F | | +-----------------2 +----------------C | | | +-----------D | 3--------------------------B | +---------------A remember: this is an unrooted tree! Ln Likelihood = -10075.84458 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.53127 ( 0.40925, 0.65339) ** 3 2 0.58378 ( 0.43835, 0.72915) ** 2 1 0.08505 ( 0.01216, 0.15801) ** 1 4 0.35751 ( 0.25562, 0.45947) ** 4 E 0.64892 ( 0.53743, 0.76031) ** 4 F 0.54480 ( 0.44368, 0.64601) ** 1 C 0.55698 ( 0.46340, 0.65053) ** 2 D 0.39870 ( 0.31806, 0.47933) ** 3 B 0.89368 ( 0.73337, 1.05393) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 19: Empirical Base Frequencies: A 0.23791 C 0.26052 G 0.25634 T(U) 0.24523 Transition/transversion ratio = 2.000000 +----------------------------B | | +---------------C | +-----1 | | +--------------D 2-------------3 | | +-------------------E | +----4 | +-----------------F | +-------------------------------A remember: this is an unrooted tree! Ln Likelihood = -10152.49653 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 1.06538 ( 0.83422, 1.29655) ** 2 B 0.94446 ( 0.73053, 1.15849) ** 2 3 0.47445 ( 0.29472, 0.65415) ** 3 1 0.18757 ( 0.09281, 0.28234) ** 1 C 0.52107 ( 0.43093, 0.61110) ** 1 D 0.48350 ( 0.39684, 0.57024) ** 3 4 0.16299 ( 0.07159, 0.25433) ** 4 E 0.65019 ( 0.53699, 0.76343) ** 4 F 0.59519 ( 0.48829, 0.70207) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 20: Empirical Base Frequencies: A 0.23595 C 0.26745 G 0.26588 T(U) 0.23072 Transition/transversion ratio = 2.000000 +---------------------B | | +----------D | +--3 | | +--------------C 2--------------1 | | +-------------E | +----------4 | +--------------F | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -9937.86950 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.82252 ( 0.66646, 0.97851) ** 2 B 0.71452 ( 0.57198, 0.85713) ** 2 1 0.50272 ( 0.36275, 0.64257) ** 1 3 0.05480 ( zero, 0.11871) 3 D 0.35349 ( 0.28657, 0.42049) ** 3 C 0.49218 ( 0.41383, 0.57051) ** 1 4 0.36991 ( 0.27877, 0.46104) ** 4 E 0.45521 ( 0.37408, 0.53641) ** 4 F 0.49220 ( 0.40771, 0.57664) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 21: Empirical Base Frequencies: A 0.24157 C 0.26026 G 0.25804 T(U) 0.24013 Transition/transversion ratio = 2.000000 +--------------C +---4 | | +----------------E +------------------1 +------------2 | | +-------------F | | | +---------D | 3-----------------------------B | +---------------A remember: this is an unrooted tree! Ln Likelihood = -10003.51947 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.51555 ( 0.38987, 0.64122) ** 3 1 0.62842 ( 0.47779, 0.77912) ** 1 4 0.11850 ( 0.04771, 0.18937) ** 4 C 0.51029 ( 0.42401, 0.59667) ** 4 2 0.41192 ( 0.31180, 0.51197) ** 2 E 0.55520 ( 0.45955, 0.65094) ** 2 F 0.48217 ( 0.39236, 0.57196) ** 1 D 0.32686 ( 0.25349, 0.40023) ** 3 B 1.00250 ( 0.82390, 1.18116) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 22: Empirical Base Frequencies: A 0.23229 C 0.26013 G 0.26680 T(U) 0.24078 Transition/transversion ratio = 2.000000 +------------------E +---------4 +--1 +----------------F | | +-----------3 +-----------C | | | +-----------D | 2--------------------------B | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -10047.01065 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.86545 ( 0.70007, 1.03087) ** 2 3 0.39700 ( 0.26622, 0.52775) ** 3 1 0.09969 ( 0.03301, 0.16639) ** 1 4 0.33313 ( 0.24218, 0.42403) ** 4 E 0.62764 ( 0.52060, 0.73461) ** 4 F 0.55391 ( 0.45476, 0.65315) ** 1 C 0.38439 ( 0.31284, 0.45594) ** 3 D 0.41117 ( 0.33400, 0.48832) ** 2 B 0.87561 ( 0.70681, 1.04451) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 23: Empirical Base Frequencies: A 0.23608 C 0.25961 G 0.26039 T(U) 0.24392 Transition/transversion ratio = 2.000000 +------------F +--------2 | +-------------------E +----------------1 | | +-----------D | +--3 | +----------------C | 4--------------------------------B | +--------------------A remember: this is an unrooted tree! Ln Likelihood = -10065.75932 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.68521 ( 0.52772, 0.84264) ** 4 1 0.54728 ( 0.38575, 0.70883) ** 1 2 0.29733 ( 0.20638, 0.38835) ** 2 F 0.44405 ( 0.35715, 0.53094) ** 2 E 0.67066 ( 0.56205, 0.77920) ** 1 3 0.07919 ( 0.00386, 0.15448) * 3 D 0.39437 ( 0.32001, 0.46870) ** 3 C 0.55252 ( 0.46504, 0.64011) ** 4 B 1.08630 ( 0.86370, 1.30895) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 24: Empirical Base Frequencies: A 0.24170 C 0.26588 G 0.25739 T(U) 0.23503 Transition/transversion ratio = 2.000000 +-------------------B | | +-----------------E | +--------2 | | +-------------F 4-----------------3 | | +--------------D | +--1 | +------------C | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -9978.53471 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.83492 ( 0.67647, 0.99337) ** 4 B 0.66665 ( 0.52695, 0.80639) ** 4 3 0.57602 ( 0.42529, 0.72678) ** 3 2 0.28954 ( 0.20305, 0.37603) ** 2 E 0.60018 ( 0.50287, 0.69742) ** 2 F 0.46002 ( 0.37535, 0.54471) ** 3 1 0.06366 ( zero, 0.13473) 1 D 0.48388 ( 0.40417, 0.56349) ** 1 C 0.42844 ( 0.35370, 0.50323) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 25: Empirical Base Frequencies: A 0.22889 C 0.26654 G 0.27569 T(U) 0.22889 Transition/transversion ratio = 2.000000 +-----------------------B | | +---------D 3----------------4 | | +-------------C | +--1 | | +---------------F | +--------2 | +------------------E | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -9950.24054 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.66405 ( 0.52765, 0.80054) ** 3 B 0.78006 ( 0.63072, 0.92934) ** 3 4 0.55951 ( 0.42112, 0.69778) ** 4 D 0.33145 ( 0.26174, 0.40125) ** 4 1 0.11131 ( 0.04610, 0.17653) ** 1 C 0.44654 ( 0.37106, 0.52193) ** 1 2 0.27872 ( 0.19650, 0.36099) ** 2 F 0.51255 ( 0.42161, 0.60340) ** 2 E 0.63668 ( 0.53419, 0.73927) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 26: Empirical Base Frequencies: A 0.23216 C 0.27098 G 0.25908 T(U) 0.23778 Transition/transversion ratio = 2.000000 +---------D | +----------------1 +--------------F | | +------------3 | +--2 +-------------E | | | +------------C | 4-----------------------------B | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -9972.26064 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.65014 ( 0.50695, 0.79342) ** 4 1 0.55858 ( 0.40977, 0.70732) ** 1 D 0.34328 ( 0.27402, 0.41266) ** 1 2 0.07462 ( 0.01213, 0.13711) ** 2 3 0.43355 ( 0.33665, 0.53044) ** 3 F 0.50177 ( 0.41447, 0.58904) ** 3 E 0.47114 ( 0.38630, 0.55603) ** 2 C 0.44040 ( 0.36520, 0.51560) ** 4 B 0.97706 ( 0.78835, 1.16571) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 27: Empirical Base Frequencies: A 0.23987 C 0.26824 G 0.26013 T(U) 0.23176 Transition/transversion ratio = 2.000000 +-------------------E +--------4 | +-------------F +------------------1 | | +------------D | +---2 | +-------------C | 3-------------------------B | +---------------------------A remember: this is an unrooted tree! Ln Likelihood = -10054.87673 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.93387 ( 0.73004, 1.13770) ** 3 1 0.63763 ( 0.44242, 0.83287) ** 1 4 0.28716 ( 0.19429, 0.38009) ** 4 E 0.66116 ( 0.55380, 0.76843) ** 4 F 0.43461 ( 0.34846, 0.52080) ** 1 2 0.10712 ( 0.02380, 0.19043) ** 2 D 0.43582 ( 0.35813, 0.51352) ** 2 C 0.47535 ( 0.39438, 0.55626) ** 3 B 0.84419 ( 0.65281, 1.03549) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 28: Empirical Base Frequencies: A 0.23529 C 0.26131 G 0.26288 T(U) 0.24052 Transition/transversion ratio = 2.000000 +--------------------------B | | +---------D | | 1---------------2 +---------------F | | +----------4 | +--3 +-----------------E | | | +------------C | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -9992.88691 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.80940 ( 0.64500, 0.97390) ** 1 B 0.89149 ( 0.71339, 1.06948) ** 1 2 0.52183 ( 0.37237, 0.67118) ** 2 D 0.32882 ( 0.26041, 0.39722) ** 2 3 0.09688 ( 0.03364, 0.16005) ** 3 4 0.34362 ( 0.25350, 0.43374) ** 4 F 0.52744 ( 0.43423, 0.62070) ** 4 E 0.58608 ( 0.48745, 0.68469) ** 3 C 0.42604 ( 0.35262, 0.49944) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 29: Empirical Base Frequencies: A 0.23987 C 0.25974 G 0.25948 T(U) 0.24092 Transition/transversion ratio = 2.000000 +-----------D +--4 | +-----------C +----------------2 | | +----------------F | +-----------3 | +---------------E | 1--------------------B | +-----------------------------A remember: this is an unrooted tree! Ln Likelihood = -10026.12934 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.98624 ( 0.79098, 1.18146) ** 1 2 0.54400 ( 0.38511, 0.70290) ** 2 4 0.08455 ( 0.00609, 0.16310) * 4 D 0.39306 ( 0.32300, 0.46318) ** 4 C 0.40833 ( 0.33716, 0.47944) ** 2 3 0.39476 ( 0.28995, 0.49955) ** 3 F 0.55626 ( 0.45672, 0.65571) ** 3 E 0.52887 ( 0.43241, 0.62533) ** 1 B 0.68835 ( 0.53358, 0.84319) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 30: Empirical Base Frequencies: A 0.22706 C 0.26444 G 0.27046 T(U) 0.23804 Transition/transversion ratio = 2.000000 +------D +--------------1 | | +-------------C | +--4 | | +--------------F | +----------2 | +-----------------E | 3------------------------B | +--------------------------A remember: this is an unrooted tree! Ln Likelihood = -9957.25733 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.89263 ( 0.72245, 1.06285) ** 3 1 0.48088 ( 0.34197, 0.61980) ** 1 D 0.24212 ( 0.18356, 0.30077) ** 1 4 0.10751 ( 0.05095, 0.16408) ** 4 C 0.45632 ( 0.38259, 0.53002) ** 4 2 0.33782 ( 0.25121, 0.42442) ** 2 F 0.49523 ( 0.40736, 0.58314) ** 2 E 0.59133 ( 0.49473, 0.68788) ** 3 B 0.84007 ( 0.67498, 1.00516) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 31: Empirical Base Frequencies: A 0.23163 C 0.26941 G 0.26810 T(U) 0.23085 Transition/transversion ratio = 2.000000 +----------D +-----------------------1 | | +-------------C | +---2 | | +-----------------F | +--------4 | +-----------------E | 3------------------------B | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10041.67248 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.71749 ( 0.55699, 0.87810) ** 3 1 0.80272 ( 0.60552, 0.99992) ** 1 D 0.34860 ( 0.27161, 0.42569) ** 1 2 0.13553 ( 0.06231, 0.20875) ** 2 C 0.45248 ( 0.37269, 0.53236) ** 2 4 0.28837 ( 0.20060, 0.37603) ** 4 F 0.58356 ( 0.48206, 0.68505) ** 4 E 0.61084 ( 0.50680, 0.71476) ** 3 B 0.81059 ( 0.64066, 0.98053) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 32: Empirical Base Frequencies: A 0.24078 C 0.25359 G 0.26327 T(U) 0.24235 Transition/transversion ratio = 2.000000 +--------------------B | | +-----------D | +--4 | | +--------------C 2--------------1 | | +-----------------E | +----------3 | +-----------------F | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -10062.20324 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.86986 ( 0.70558, 1.03421) ** 2 B 0.67754 ( 0.53956, 0.81559) ** 2 1 0.47568 ( 0.34045, 0.61091) ** 1 4 0.04918 ( zero, 0.11969) 4 D 0.39035 ( 0.31875, 0.46204) ** 4 C 0.49225 ( 0.41229, 0.57217) ** 1 3 0.35568 ( 0.25482, 0.45655) ** 3 E 0.59133 ( 0.48480, 0.69796) ** 3 F 0.60985 ( 0.50134, 0.71829) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 33: Empirical Base Frequencies: A 0.24497 C 0.24850 G 0.26771 T(U) 0.23882 Transition/transversion ratio = 2.000000 +---------------C | +------------------1 +----------------E | | +------------3 | +--2 +--------------F | | | +----------D | 4-----------------------B | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10001.19578 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.74336 ( 0.59171, 0.89494) ** 4 1 0.62136 ( 0.46370, 0.77911) ** 1 C 0.52679 ( 0.44077, 0.61285) ** 1 2 0.03023 ( zero, 0.09365) 2 3 0.42330 ( 0.32524, 0.52137) ** 3 E 0.53557 ( 0.44346, 0.62760) ** 3 F 0.48543 ( 0.39737, 0.57360) ** 2 D 0.36055 ( 0.28960, 0.43149) ** 4 B 0.78026 ( 0.62221, 0.93839) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 34: Empirical Base Frequencies: A 0.24471 C 0.26301 G 0.25503 T(U) 0.23725 Transition/transversion ratio = 2.000000 +---------------------------B | | +--------D | | 4--------------1 +-------------------E | | +--------3 | +--2 +---------------F | | | +-------------C | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10000.28705 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.77490 ( 0.61857, 0.93133) ** 4 B 0.91856 ( 0.73995, 1.09720) ** 4 1 0.47806 ( 0.34085, 0.61528) ** 1 D 0.31314 ( 0.24709, 0.37920) ** 1 2 0.08461 ( 0.02452, 0.14462) ** 2 3 0.30036 ( 0.21580, 0.38497) ** 3 E 0.64600 ( 0.54119, 0.75085) ** 3 F 0.52202 ( 0.42991, 0.61413) ** 2 C 0.46084 ( 0.38512, 0.53645) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 35: Empirical Base Frequencies: A 0.23059 C 0.25856 G 0.26993 T(U) 0.24092 Transition/transversion ratio = 2.000000 +-----------------------B | | +--------------C | +---4 | | +-----------D 1---------------2 | | +----------------F | +------3 | +------------------E | +--------------------------A remember: this is an unrooted tree! Ln Likelihood = -10012.48158 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.87766 ( 0.69924, 1.05598) ** 1 B 0.80185 ( 0.63500, 0.96861) ** 1 2 0.52205 ( 0.36223, 0.68196) ** 2 4 0.11206 ( 0.03988, 0.18416) ** 4 C 0.47940 ( 0.40102, 0.55782) ** 4 D 0.37785 ( 0.30739, 0.44832) ** 2 3 0.23225 ( 0.14679, 0.31773) ** 3 F 0.53999 ( 0.44441, 0.63566) ** 3 E 0.61762 ( 0.51468, 0.72055) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 36: Empirical Base Frequencies: A 0.24275 C 0.24993 G 0.25961 T(U) 0.24771 Transition/transversion ratio = 2.000000 +----------------------B | | +----------D | +--1 | | +----------------C 2-------------------3 | | +-----------------E | +------4 | +----------------F | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10015.38413 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.72799 ( 0.57782, 0.87827) ** 2 B 0.75110 ( 0.59812, 0.90399) ** 2 3 0.65135 ( 0.48565, 0.81704) ** 3 1 0.06711 ( zero, 0.13452) * 1 D 0.36746 ( 0.29758, 0.43738) ** 1 C 0.55946 ( 0.47288, 0.64593) ** 3 4 0.24006 ( 0.15827, 0.32186) ** 4 E 0.57214 ( 0.47627, 0.66806) ** 4 F 0.54958 ( 0.45613, 0.64301) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 37: Empirical Base Frequencies: A 0.23373 C 0.26758 G 0.26536 T(U) 0.23333 Transition/transversion ratio = 2.000000 +----------D +---------------2 | | +-------------C | +--4 | | +---------------F | +---------1 | +--------------E | 3----------------------------B | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -9946.34527 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.65857 ( 0.52057, 0.79667) ** 3 2 0.53993 ( 0.39735, 0.68251) ** 2 D 0.36263 ( 0.29327, 0.43201) ** 2 4 0.05285 ( zero, 0.11094) 4 C 0.47512 ( 0.39773, 0.55245) ** 4 1 0.32338 ( 0.24039, 0.40636) ** 1 F 0.52779 ( 0.43974, 0.61573) ** 1 E 0.49614 ( 0.41080, 0.58151) ** 3 B 0.94775 ( 0.76981, 1.12566) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 38: Empirical Base Frequencies: A 0.23438 C 0.24954 G 0.27137 T(U) 0.24471 Transition/transversion ratio = 2.000000 +-------D +---------------1 | | +----------------C | +--2 | | +-------------F | +---------3 | +---------------E | 4--------------------------------B | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -9983.83099 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.78951 ( 0.61926, 0.95984) ** 4 1 0.53541 ( 0.37910, 0.69164) ** 1 D 0.27135 ( 0.20740, 0.33541) ** 1 2 0.08827 ( 0.02638, 0.15016) ** 2 C 0.54573 ( 0.46107, 0.63034) ** 2 3 0.30854 ( 0.22927, 0.38784) ** 3 F 0.46039 ( 0.38006, 0.54062) ** 3 E 0.51284 ( 0.42792, 0.59779) ** 4 B 1.09740 ( 0.87523, 1.31958) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 39: Empirical Base Frequencies: A 0.24484 C 0.25399 G 0.25477 T(U) 0.24641 Transition/transversion ratio = 2.000000 +------------------------B | | +----------D | | 3-------------------2 +-----------------E | | +---------1 | +---4 +---------------F | | | +-------------C | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10041.90097 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.71561 ( 0.55907, 0.87224) ** 3 B 0.83893 ( 0.66721, 1.01065) ** 3 2 0.67101 ( 0.49859, 0.84337) ** 2 D 0.34493 ( 0.27089, 0.41910) ** 2 4 0.11844 ( 0.05059, 0.18629) ** 4 1 0.30806 ( 0.21928, 0.39689) ** 1 E 0.59006 ( 0.49143, 0.68859) ** 1 F 0.53613 ( 0.44249, 0.62981) ** 4 C 0.45904 ( 0.38003, 0.53795) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 40: Empirical Base Frequencies: A 0.23974 C 0.25399 G 0.25922 T(U) 0.24706 Transition/transversion ratio = 2.000000 +------------F +-----------3 +--1 +----------------E | | +---------2 +----------C | | | +------------D | 4-------------------------B | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -9966.14963 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.83894 ( 0.68586, 0.99207) ** 4 2 0.33011 ( 0.21370, 0.44653) ** 2 1 0.07965 ( 0.02015, 0.13924) ** 1 3 0.40189 ( 0.30881, 0.49492) ** 3 F 0.44602 ( 0.36340, 0.52862) ** 3 E 0.56746 ( 0.47459, 0.66041) ** 1 C 0.37193 ( 0.30347, 0.44049) ** 2 D 0.41481 ( 0.34067, 0.48895) ** 4 B 0.84538 ( 0.68927, 1.00153) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 41: Empirical Base Frequencies: A 0.23190 C 0.25739 G 0.26431 T(U) 0.24641 Transition/transversion ratio = 2.000000 +------------D +--2 | +--------------C +-------------1 | | +-------------F | +----------3 | +----------------E | 4----------------------B | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -10018.70366 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.85879 ( 0.68877, 1.02884) ** 4 1 0.45586 ( 0.31378, 0.59795) ** 1 2 0.07406 ( 0.00173, 0.14649) * 2 D 0.43398 ( 0.35728, 0.51073) ** 2 C 0.48552 ( 0.40423, 0.56671) ** 1 3 0.33600 ( 0.24254, 0.42947) ** 3 F 0.47637 ( 0.38880, 0.56385) ** 3 E 0.55359 ( 0.45982, 0.64738) ** 4 B 0.77124 ( 0.61472, 0.92785) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 42: Empirical Base Frequencies: A 0.23608 C 0.26771 G 0.25569 T(U) 0.24052 Transition/transversion ratio = 2.000000 +-----------D | +-----------3 +---------------F | | +---------1 | +-----2 +------------------E | | | +------------C | 4---------------------B | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10048.02533 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.72746 ( 0.59054, 0.86443) ** 4 3 0.40485 ( 0.28393, 0.52571) ** 3 D 0.38804 ( 0.30967, 0.46641) ** 3 2 0.17865 ( 0.10294, 0.25427) ** 2 1 0.31958 ( 0.22796, 0.41130) ** 1 F 0.53390 ( 0.43725, 0.63049) ** 1 E 0.62821 ( 0.52252, 0.73394) ** 2 C 0.42121 ( 0.34271, 0.49965) ** 4 B 0.73572 ( 0.59848, 0.87303) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 43: Empirical Base Frequencies: A 0.24157 C 0.25660 G 0.25608 T(U) 0.24575 Transition/transversion ratio = 2.000000 +------------D +------------1 | | +--------------C | +--3 | | +--------------F | +--------2 | +-------------------E | 4----------------------B | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10043.59330 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.73488 ( 0.59333, 0.87649) ** 4 1 0.43869 ( 0.31181, 0.56548) ** 1 D 0.43521 ( 0.35317, 0.51726) ** 1 3 0.09170 ( 0.02293, 0.16042) ** 3 C 0.48558 ( 0.40119, 0.56988) ** 3 2 0.29960 ( 0.21112, 0.38807) ** 2 F 0.50172 ( 0.40927, 0.59410) ** 2 E 0.64532 ( 0.53902, 0.75155) ** 4 B 0.75337 ( 0.60906, 0.89763) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 44: Empirical Base Frequencies: A 0.24484 C 0.26340 G 0.25490 T(U) 0.23686 Transition/transversion ratio = 2.000000 +---------------------------B | | +--------D 1-----------------2 | | +-------------C | +---3 | | +-------------F | +-----------4 | +-------------------E | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10092.13824 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.73282 ( 0.57440, 0.89125) ** 1 B 0.91964 ( 0.73698, 1.10218) ** 1 2 0.60037 ( 0.43800, 0.76264) ** 2 D 0.30009 ( 0.22937, 0.37083) ** 2 3 0.13820 ( 0.06914, 0.20722) ** 3 C 0.46787 ( 0.38659, 0.54916) ** 3 4 0.38656 ( 0.28490, 0.48831) ** 4 F 0.48044 ( 0.38745, 0.57334) ** 4 E 0.67662 ( 0.56299, 0.79031) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 45: Empirical Base Frequencies: A 0.23660 C 0.26954 G 0.26327 T(U) 0.23059 Transition/transversion ratio = 2.000000 +---------D | +---------------1 +------------F | | +---------3 | +--4 +------------------E | | | +--------------C | 2-----------------------B | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -9972.10268 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.80411 ( 0.64164, 0.96661) ** 2 1 0.54015 ( 0.39403, 0.68627) ** 1 D 0.32515 ( 0.25678, 0.39354) ** 1 4 0.09611 ( 0.03269, 0.15945) ** 4 3 0.31835 ( 0.23471, 0.40203) ** 3 F 0.42713 ( 0.34649, 0.50768) ** 3 E 0.62591 ( 0.52654, 0.72529) ** 4 C 0.48032 ( 0.40143, 0.55914) ** 2 B 0.80608 ( 0.64627, 0.96600) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 46: Empirical Base Frequencies: A 0.23948 C 0.24366 G 0.26471 T(U) 0.25216 Transition/transversion ratio = 2.000000 +--------------------B | | +-------------F | +------4 | +----3 +--------------E | | | 2------------------1 +--------------C | | | +-------D | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -9900.92436 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.84260 ( 0.68077, 1.00437) ** 2 B 0.69014 ( 0.54561, 0.83468) ** 2 1 0.62670 ( 0.47445, 0.77889) ** 1 3 0.15435 ( 0.09070, 0.21800) ** 3 4 0.24078 ( 0.17122, 0.31034) ** 4 F 0.44629 ( 0.37098, 0.52155) ** 4 E 0.49622 ( 0.41676, 0.57562) ** 3 C 0.48273 ( 0.40597, 0.55947) ** 1 D 0.26801 ( 0.20403, 0.33206) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 47: Empirical Base Frequencies: A 0.23281 C 0.26039 G 0.26131 T(U) 0.24549 Transition/transversion ratio = 2.000000 +-------------------F +-----------2 +---3 +----------------E | | +----------------1 +--------------C | | | +---------D | 4------------------------------B | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10100.42144 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.73286 ( 0.57219, 0.89343) ** 4 1 0.56866 ( 0.40727, 0.73010) ** 1 3 0.11196 ( 0.04008, 0.18385) ** 3 2 0.39334 ( 0.28760, 0.49905) ** 2 F 0.63578 ( 0.52354, 0.74801) ** 2 E 0.56728 ( 0.46320, 0.67140) ** 3 C 0.49394 ( 0.40903, 0.57878) ** 1 D 0.32781 ( 0.25414, 0.40140) ** 4 B 1.00847 ( 0.80499, 1.21206) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 48: Empirical Base Frequencies: A 0.22758 C 0.26444 G 0.26562 T(U) 0.24235 Transition/transversion ratio = 2.000000 +-----------D +------------3 | | +---------------C | +---2 | | +------------F | +----------1 | +---------------E | 4----------------------------B | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -9992.88773 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.79222 ( 0.63118, 0.95333) ** 4 3 0.44150 ( 0.29828, 0.58467) ** 3 D 0.37870 ( 0.30078, 0.45661) ** 3 2 0.11093 ( 0.04221, 0.17957) ** 2 C 0.51302 ( 0.42655, 0.59948) ** 2 1 0.34827 ( 0.25796, 0.43855) ** 1 F 0.43837 ( 0.35841, 0.51829) ** 1 E 0.52310 ( 0.43653, 0.60976) ** 4 B 0.96127 ( 0.77750, 1.14498) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 49: Empirical Base Frequencies: A 0.24601 C 0.26013 G 0.25699 T(U) 0.23686 Transition/transversion ratio = 2.000000 +---------D +-------------2 | | +---------------C | +--1 | | +---------------F | +-----------4 | +---------------E | 3---------------------------B | +----------------------------A remember: this is an unrooted tree! Ln Likelihood = -10033.25406 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.94346 ( 0.75202, 1.13499) ** 3 2 0.46430 ( 0.31161, 0.61694) ** 2 D 0.31604 ( 0.24755, 0.38461) ** 2 1 0.06986 ( 0.00806, 0.13165) ** 1 C 0.52196 ( 0.43812, 0.60571) ** 1 4 0.38979 ( 0.29554, 0.48409) ** 4 F 0.50747 ( 0.41729, 0.59772) ** 4 E 0.53273 ( 0.44049, 0.62490) ** 3 B 0.93924 ( 0.74778, 1.13069) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 50: Empirical Base Frequencies: A 0.24928 C 0.25556 G 0.25046 T(U) 0.24471 Transition/transversion ratio = 2.000000 +------------------------B | | +-----------------E | +-------1 | +-----4 +---------------F | | | 3---------------2 +-------------C | | | +------D | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -9937.22025 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.76403 ( 0.61329, 0.91472) ** 3 B 0.83365 ( 0.67160, 0.99580) ** 3 2 0.52411 ( 0.38891, 0.65919) ** 2 4 0.17503 ( 0.11163, 0.23843) ** 4 1 0.25530 ( 0.17993, 0.33065) ** 1 E 0.59495 ( 0.49872, 0.69119) ** 1 F 0.51752 ( 0.42993, 0.60516) ** 4 C 0.44352 ( 0.37079, 0.51625) ** 2 D 0.20969 ( 0.15158, 0.26791) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 51: Empirical Base Frequencies: A 0.24144 C 0.26405 G 0.26614 T(U) 0.22837 Transition/transversion ratio = 2.000000 +-------------F +---------1 +---2 +---------------E | | +--------------4 +------------C | | | +----------D | 3------------------------------B | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -9982.76492 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.66764 ( 0.52553, 0.80971) ** 3 4 0.50556 ( 0.36086, 0.65037) ** 4 2 0.10681 ( 0.04425, 0.16944) ** 2 1 0.34058 ( 0.25421, 0.42689) ** 1 F 0.46784 ( 0.38552, 0.55012) ** 1 E 0.52410 ( 0.43691, 0.61131) ** 2 C 0.42501 ( 0.35093, 0.49914) ** 4 D 0.36368 ( 0.29132, 0.43605) ** 3 B 1.00865 ( 0.81635, 1.20106) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 52: Empirical Base Frequencies: A 0.23007 C 0.26275 G 0.25817 T(U) 0.24902 Transition/transversion ratio = 2.000000 +------------------------B | | +----------D 3--------------2 | | +------------C | +----1 | | +-----------F | +---------4 | +--------------------E | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -10010.07953 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.80915 ( 0.65045, 0.96789) ** 3 B 0.83179 ( 0.66899, 0.99471) ** 3 2 0.48077 ( 0.34056, 0.62094) ** 2 D 0.36041 ( 0.28514, 0.43568) ** 2 1 0.14512 ( 0.07486, 0.21531) ** 1 C 0.44190 ( 0.36414, 0.51957) ** 1 4 0.31790 ( 0.23234, 0.40349) ** 4 F 0.40933 ( 0.32796, 0.49059) ** 4 E 0.68131 ( 0.57402, 0.78866) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 53: Empirical Base Frequencies: A 0.24209 C 0.24405 G 0.27438 T(U) 0.23948 Transition/transversion ratio = 2.000000 +--------------C +--4 | | +-------------F +-------------2 +------3 | | +------------------E | | | +------------D | 1-----------------------B | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -10018.65977 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.85677 ( 0.68956, 1.02391) ** 1 2 0.45941 ( 0.31991, 0.59883) ** 2 4 0.09602 ( 0.02885, 0.16330) ** 4 C 0.49081 ( 0.40869, 0.57292) ** 4 3 0.22423 ( 0.14827, 0.30020) ** 3 F 0.47244 ( 0.38844, 0.55645) ** 3 E 0.64243 ( 0.54070, 0.74412) ** 2 D 0.42744 ( 0.34755, 0.50732) ** 1 B 0.80294 ( 0.64395, 0.96194) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 54: Empirical Base Frequencies: A 0.24131 C 0.25438 G 0.27046 T(U) 0.23386 Transition/transversion ratio = 2.000000 +------------F +-------------4 +---2 +-------------------E | | +------------------1 +-----------C | | | +-----------D | 3-----------------------B | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10037.17193 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.74255 ( 0.58522, 0.89980) ** 3 1 0.64045 ( 0.47228, 0.80866) ** 1 2 0.12771 ( 0.05485, 0.20067) ** 2 4 0.44488 ( 0.33878, 0.55096) ** 4 F 0.44079 ( 0.35095, 0.53063) ** 4 E 0.66806 ( 0.55740, 0.77869) ** 2 C 0.38202 ( 0.30741, 0.45669) ** 1 D 0.38373 ( 0.30526, 0.46220) ** 3 B 0.78532 ( 0.62106, 0.94968) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 55: Empirical Base Frequencies: A 0.22980 C 0.26667 G 0.25046 T(U) 0.25307 Transition/transversion ratio = 2.000000 +------------C +----1 | | +----------------F +---------------2 +------------3 | | +-----------------E | | | +--------D | 4---------------------------B | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -10051.96629 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.85999 ( 0.68101, 1.03887) ** 4 2 0.52114 ( 0.36448, 0.67781) ** 2 1 0.14491 ( 0.07579, 0.21407) ** 1 C 0.40917 ( 0.33407, 0.48427) ** 1 3 0.42065 ( 0.31647, 0.52479) ** 3 F 0.55430 ( 0.45240, 0.65618) ** 3 E 0.58999 ( 0.48616, 0.69393) ** 2 D 0.30048 ( 0.23042, 0.37049) ** 4 B 0.92183 ( 0.73591, 1.10764) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 56: Empirical Base Frequencies: A 0.23778 C 0.25935 G 0.26471 T(U) 0.23817 Transition/transversion ratio = 2.000000 +------------------------B | | +-------D | | 4------------------1 +----------------F | | +----------3 | +--2 +----------------E | | | +-------------C | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -9975.80883 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.75852 ( 0.60043, 0.91665) ** 4 B 0.84038 ( 0.67165, 1.00922) ** 4 1 0.63269 ( 0.47349, 0.79188) ** 1 D 0.26083 ( 0.19822, 0.32345) ** 1 2 0.09931 ( 0.03825, 0.16031) ** 2 3 0.35884 ( 0.26809, 0.44951) ** 3 F 0.54043 ( 0.44622, 0.63463) ** 3 E 0.56672 ( 0.47034, 0.66316) ** 2 C 0.46800 ( 0.39181, 0.54419) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 57: Empirical Base Frequencies: A 0.23961 C 0.25542 G 0.26131 T(U) 0.24366 Transition/transversion ratio = 2.000000 +---------------------------B | | +-----------------E | +--------------4 | +--3 +----------------F | | | 1----------------2 +---------D | | | +----------------C | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10068.24645 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.71455 ( 0.56094, 0.86819) ** 1 B 0.92232 ( 0.74033, 1.10435) ** 1 2 0.55032 ( 0.39595, 0.70469) ** 2 3 0.04102 ( zero, 0.10508) 3 4 0.47967 ( 0.36779, 0.59147) ** 4 E 0.58234 ( 0.47920, 0.68544) ** 4 F 0.53736 ( 0.43788, 0.63691) ** 3 D 0.31716 ( 0.24826, 0.38616) ** 2 C 0.56063 ( 0.47129, 0.64998) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 58: Empirical Base Frequencies: A 0.23895 C 0.25216 G 0.26641 T(U) 0.24248 Transition/transversion ratio = 2.000000 +------------------------B | | +--------------F | +--------3 | +--2 +------------------E | | | 4---------------1 +-------------C | | | +----------D | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -10006.08529 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.66273 ( 0.52624, 0.79912) ** 4 B 0.82279 ( 0.66766, 0.97798) ** 4 1 0.54135 ( 0.40106, 0.68154) ** 1 2 0.06965 ( 0.00937, 0.12992) ** 2 3 0.28175 ( 0.19820, 0.36527) ** 3 F 0.50723 ( 0.41707, 0.59750) ** 3 E 0.64424 ( 0.53961, 0.74878) ** 2 C 0.47067 ( 0.39308, 0.54833) ** 1 D 0.36152 ( 0.29087, 0.43210) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 59: Empirical Base Frequencies: A 0.24941 C 0.25281 G 0.26431 T(U) 0.23346 Transition/transversion ratio = 2.000000 +--------------------------B | | +-------D 3--------------1 | | +-------------C | +---2 | | +----------------E | +--------4 | +---------------F | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -9987.24150 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.87062 ( 0.69710, 1.04423) ** 3 B 0.89521 ( 0.71891, 1.07142) ** 3 1 0.47832 ( 0.33534, 0.62125) ** 1 D 0.27165 ( 0.20676, 0.33663) ** 1 2 0.13703 ( 0.07167, 0.20238) ** 2 C 0.45299 ( 0.37651, 0.52940) ** 2 4 0.30958 ( 0.22615, 0.39302) ** 4 E 0.56283 ( 0.46810, 0.65765) ** 4 F 0.52053 ( 0.42929, 0.61168) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 60: Empirical Base Frequencies: A 0.24850 C 0.24575 G 0.27085 T(U) 0.23490 Transition/transversion ratio = 2.000000 +-----------D | +---------------1 +----------------F | | +----------2 | +--3 +------------------E | | | +-------------C | 4----------------------B | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -10051.26656 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.79704 ( 0.63838, 0.95573) ** 4 1 0.52955 ( 0.38413, 0.67488) ** 1 D 0.38447 ( 0.30752, 0.46141) ** 1 3 0.08377 ( 0.01399, 0.15346) ** 3 2 0.36832 ( 0.26852, 0.46813) ** 2 F 0.56207 ( 0.45961, 0.66455) ** 2 E 0.62609 ( 0.51643, 0.73577) ** 3 C 0.47500 ( 0.39255, 0.55741) ** 4 B 0.76374 ( 0.61006, 0.91733) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 61: Empirical Base Frequencies: A 0.23765 C 0.26222 G 0.24980 T(U) 0.25033 Transition/transversion ratio = 2.000000 +---------------------B | | +-----------D | +--3 | | | +--------------F 4-----------------1 +----------2 | | +-----------------E | | | +-------------C | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10014.90496 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.76760 ( 0.61763, 0.91765) ** 4 B 0.72409 ( 0.57755, 0.87074) ** 4 1 0.57975 ( 0.43008, 0.72942) ** 1 3 0.04925 ( zero, 0.11014) 3 D 0.41074 ( 0.33598, 0.48550) ** 3 2 0.36173 ( 0.27103, 0.45239) ** 2 F 0.47004 ( 0.38224, 0.55773) ** 2 E 0.59635 ( 0.49784, 0.69484) ** 1 C 0.46510 ( 0.38419, 0.54597) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 62: Empirical Base Frequencies: A 0.24863 C 0.25804 G 0.25503 T(U) 0.23830 Transition/transversion ratio = 2.000000 +-------D | +----------------2 +----------------F | | +--------1 | +---3 +----------------E | | | +------------C | 4-----------------------B | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -9930.51990 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.66671 ( 0.53425, 0.79929) ** 4 2 0.55618 ( 0.42068, 0.69163) ** 2 D 0.26357 ( 0.20174, 0.32541) ** 2 3 0.12242 ( 0.06333, 0.18145) ** 3 1 0.29427 ( 0.21285, 0.37574) ** 1 F 0.53597 ( 0.44485, 0.62708) ** 1 E 0.56554 ( 0.47208, 0.65889) ** 3 C 0.44011 ( 0.36758, 0.51259) ** 4 B 0.77844 ( 0.63244, 0.92438) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 63: Empirical Base Frequencies: A 0.23098 C 0.27673 G 0.25843 T(U) 0.23386 Transition/transversion ratio = 2.000000 +---------------------B | | +--------------C 4-------------2 | | +----------D | +--3 | | +----------------F | +----------1 | +----------------E | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -9989.89074 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.84295 ( 0.68458, 1.00130) ** 4 B 0.73945 ( 0.59446, 0.88455) ** 4 2 0.44623 ( 0.31497, 0.57757) ** 2 C 0.47882 ( 0.39704, 0.56059) ** 2 3 0.07209 ( 0.01236, 0.13177) ** 3 D 0.35503 ( 0.28614, 0.42385) ** 3 1 0.35004 ( 0.26002, 0.44014) ** 1 F 0.54592 ( 0.45117, 0.64067) ** 1 E 0.55733 ( 0.46114, 0.65355) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 64: Empirical Base Frequencies: A 0.22824 C 0.25333 G 0.26471 T(U) 0.25373 Transition/transversion ratio = 2.000000 +---------------------B | | +--------------E | +-----------3 | +--2 +--------------F | | | 1---------------4 +-----------D | | | +-------------C | +--------------------------A remember: this is an unrooted tree! Ln Likelihood = -10001.69942 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.88255 ( 0.71116, 1.05404) ** 1 B 0.73768 ( 0.58552, 0.88982) ** 1 4 0.51213 ( 0.36564, 0.65855) ** 4 2 0.07082 ( 0.00685, 0.13486) * 2 3 0.37752 ( 0.28397, 0.47097) ** 3 E 0.50921 ( 0.42167, 0.59664) ** 3 F 0.49599 ( 0.40933, 0.58264) ** 2 D 0.40154 ( 0.32738, 0.47578) ** 4 C 0.46440 ( 0.38227, 0.54653) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 65: Empirical Base Frequencies: A 0.23582 C 0.26078 G 0.25908 T(U) 0.24431 Transition/transversion ratio = 2.000000 +--------D +----------------3 | | +---------------C | +--2 | | +----------------E | +--------1 | +---------------F | 4----------------------B | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -9961.19980 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.76356 ( 0.61307, 0.91405) ** 4 3 0.55342 ( 0.41241, 0.69441) ** 3 D 0.28631 ( 0.22142, 0.35121) ** 3 2 0.08826 ( 0.02771, 0.14875) ** 2 C 0.52795 ( 0.44461, 0.61122) ** 2 1 0.30252 ( 0.21971, 0.38534) ** 1 E 0.55862 ( 0.46656, 0.65074) ** 1 F 0.52080 ( 0.43167, 0.60986) ** 4 B 0.77325 ( 0.62140, 0.92516) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 66: Empirical Base Frequencies: A 0.25451 C 0.25542 G 0.25686 T(U) 0.23320 Transition/transversion ratio = 2.000000 +---------D | +------------3 +--------------------E | | +------1 | +--4 +------------------F | | | +--------------C | 2-------------------------B | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -10018.98500 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.82280 ( 0.66801, 0.97759) ** 2 3 0.41381 ( 0.28381, 0.54372) ** 3 D 0.34071 ( 0.27484, 0.40653) ** 3 4 0.05650 ( 0.00264, 0.11035) * 4 1 0.20528 ( 0.12706, 0.28355) ** 1 E 0.69108 ( 0.58084, 0.80140) ** 1 F 0.62388 ( 0.52070, 0.72696) ** 4 C 0.49007 ( 0.41248, 0.56760) ** 2 B 0.86507 ( 0.70491, 1.02533) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 67: Empirical Base Frequencies: A 0.23085 C 0.26706 G 0.27163 T(U) 0.23046 Transition/transversion ratio = 2.000000 +--------------C +-------------2 | | +------------D | +--1 | | +----------------F | +---------3 | +-------------------E | 4---------------------------B | +---------------------------A remember: this is an unrooted tree! Ln Likelihood = -10085.57554 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.93730 ( 0.74524, 1.12934) ** 4 2 0.47072 ( 0.31459, 0.62683) ** 2 C 0.47460 ( 0.39116, 0.55804) ** 2 1 0.05296 ( zero, 0.11490) 1 D 0.41313 ( 0.33755, 0.48859) ** 1 3 0.31102 ( 0.21812, 0.40393) ** 3 F 0.55532 ( 0.45625, 0.65430) ** 3 E 0.65021 ( 0.54180, 0.75869) ** 4 B 0.91215 ( 0.72333, 1.10097) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 68: Empirical Base Frequencies: A 0.24105 C 0.25281 G 0.26915 T(U) 0.23699 Transition/transversion ratio = 2.000000 +------------------E +---------2 +---1 +-------------F | | +---------------------3 +-------------C | | | +-----------D | 4-------------------B | +---------------------------A remember: this is an unrooted tree! Ln Likelihood = -10067.04187 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.93841 ( 0.74671, 1.13016) ** 4 3 0.73259 ( 0.54364, 0.92146) ** 3 1 0.11925 ( 0.04496, 0.19363) ** 1 2 0.32492 ( 0.23478, 0.41504) ** 2 E 0.63891 ( 0.53333, 0.74449) ** 2 F 0.45785 ( 0.37086, 0.54495) ** 1 C 0.44803 ( 0.36745, 0.52870) ** 3 D 0.39863 ( 0.31620, 0.48106) ** 4 B 0.66992 ( 0.50851, 0.83137) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 69: Empirical Base Frequencies: A 0.24797 C 0.26183 G 0.26052 T(U) 0.22967 Transition/transversion ratio = 2.000000 +----------D +--------------2 | | +---------------C | +--1 | | +---------------F | +---------3 | +---------------E | 4----------------------B | +------------------A remember: this is an unrooted tree! Ln Likelihood = -9955.70835 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.63338 ( 0.50902, 0.75777) ** 4 2 0.50281 ( 0.37717, 0.62841) ** 2 D 0.35221 ( 0.28428, 0.42023) ** 2 1 0.05386 ( zero, 0.11123) * 1 C 0.51540 ( 0.43412, 0.59667) ** 1 3 0.30736 ( 0.22456, 0.39011) ** 3 F 0.51949 ( 0.43066, 0.60836) ** 3 E 0.54400 ( 0.45289, 0.63510) ** 4 B 0.77009 ( 0.63055, 0.90959) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 70: Empirical Base Frequencies: A 0.23752 C 0.26288 G 0.26850 T(U) 0.23111 Transition/transversion ratio = 2.000000 +-----------------------B | | +--------D 1------------2 | | +-----------C | +----4 | | +---------------F | +---------3 | +----------------E | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -9944.74726 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.79438 ( 0.64705, 0.94179) ** 1 B 0.78020 ( 0.63442, 0.92600) ** 1 2 0.43590 ( 0.31079, 0.56096) ** 2 D 0.29310 ( 0.22717, 0.35903) ** 2 4 0.16790 ( 0.10168, 0.23401) ** 4 C 0.39826 ( 0.32699, 0.46956) ** 4 3 0.30458 ( 0.22101, 0.38817) ** 3 F 0.53718 ( 0.44436, 0.62995) ** 3 E 0.56900 ( 0.47343, 0.66462) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 71: Empirical Base Frequencies: A 0.24353 C 0.26065 G 0.26157 T(U) 0.23425 Transition/transversion ratio = 2.000000 +------------------------B | | +---------------C | | 1------------2 +----------------E | | +--------4 | +--3 +-------------F | | | +--------D | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -9906.28398 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.83937 ( 0.68128, 0.99742) ** 1 B 0.83625 ( 0.67957, 0.99282) ** 1 2 0.43245 ( 0.30254, 0.56235) ** 2 C 0.53197 ( 0.45066, 0.61327) ** 2 3 0.04084 ( zero, 0.09623) 3 4 0.29172 ( 0.21575, 0.36777) ** 4 E 0.56658 ( 0.47784, 0.65543) ** 4 F 0.46151 ( 0.38224, 0.54079) ** 3 D 0.29908 ( 0.23984, 0.35826) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 72: Empirical Base Frequencies: A 0.24497 C 0.25490 G 0.25765 T(U) 0.24248 Transition/transversion ratio = 2.000000 +---------D | +-------------------2 +-----------------E | | +---------1 | +----4 +--------------F | | | +------------C | 3-----------------------B | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -10032.26212 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.64675 ( 0.50499, 0.78855) ** 3 2 0.65572 ( 0.49368, 0.81769) ** 2 D 0.31985 ( 0.24667, 0.39311) ** 2 4 0.15597 ( 0.08499, 0.22694) ** 4 1 0.33739 ( 0.24616, 0.42873) ** 1 E 0.60025 ( 0.50002, 0.70051) ** 1 F 0.50680 ( 0.41555, 0.59794) ** 4 C 0.44400 ( 0.36565, 0.52233) ** 3 B 0.80773 ( 0.64851, 0.96690) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 73: Empirical Base Frequencies: A 0.24235 C 0.26261 G 0.25072 T(U) 0.24431 Transition/transversion ratio = 2.000000 +---------D +---------------2 | | +--------------C | +--1 | | +--------------E | +---------4 | +-------------F | 3-----------------------B | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -9948.30413 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.66851 ( 0.53546, 0.80163) ** 3 2 0.53227 ( 0.39785, 0.66661) ** 2 D 0.33255 ( 0.26371, 0.40150) ** 2 1 0.10657 ( 0.04301, 0.17012) ** 1 C 0.47583 ( 0.39785, 0.55377) ** 1 4 0.32436 ( 0.24194, 0.40684) ** 4 E 0.51149 ( 0.42603, 0.59683) ** 4 F 0.46882 ( 0.38709, 0.55060) ** 3 B 0.79528 ( 0.64590, 0.94461) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 74: Empirical Base Frequencies: A 0.23647 C 0.25464 G 0.26850 T(U) 0.24039 Transition/transversion ratio = 2.000000 +--------D | +-----------------4 +----------------E | | +--------3 | +----2 +----------------F | | | +-------------C | 1-----------------------B | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -10036.06733 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.80131 ( 0.63500, 0.96768) ** 1 4 0.59493 ( 0.43664, 0.75317) ** 4 D 0.28944 ( 0.21808, 0.36087) ** 4 2 0.17877 ( 0.10666, 0.25088) ** 2 3 0.29553 ( 0.20851, 0.38262) ** 3 E 0.56704 ( 0.47094, 0.66311) ** 3 F 0.55789 ( 0.46208, 0.65382) ** 2 C 0.46492 ( 0.38466, 0.54507) ** 1 B 0.78663 ( 0.62273, 0.95047) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 75: Empirical Base Frequencies: A 0.23046 C 0.25686 G 0.26575 T(U) 0.24693 Transition/transversion ratio = 2.000000 +---------------------------B | | +---------------E | +--------1 | | +-------------F 3------------2 | | +-------------C | +--4 | +----------D | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -9887.89966 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.73832 ( 0.59484, 0.88172) ** 3 B 0.94151 ( 0.76828, 1.11465) ** 3 2 0.41295 ( 0.28726, 0.53869) ** 2 1 0.28606 ( 0.21053, 0.36170) ** 1 E 0.51846 ( 0.43496, 0.60190) ** 1 F 0.44828 ( 0.37047, 0.52615) ** 2 4 0.03945 ( zero, 0.09243) 4 C 0.44203 ( 0.37238, 0.51179) ** 4 D 0.35874 ( 0.29572, 0.42171) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 76: Empirical Base Frequencies: A 0.24405 C 0.25399 G 0.25582 T(U) 0.24614 Transition/transversion ratio = 2.000000 +-------------------------B | | +----------------E | +--------3 | | +--------------F 4------------------2 | | +------------D | +--1 | +-----------------C | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10049.35657 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.75005 ( 0.58613, 0.91397) ** 4 B 0.86189 ( 0.68378, 1.04011) ** 4 2 0.61721 ( 0.44133, 0.79311) ** 2 3 0.29425 ( 0.20006, 0.38853) ** 3 E 0.55521 ( 0.46121, 0.64925) ** 3 F 0.49197 ( 0.40298, 0.58094) ** 2 1 0.10264 ( 0.01984, 0.18545) ** 1 D 0.41658 ( 0.33798, 0.49507) ** 1 C 0.57451 ( 0.48197, 0.66709) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 77: Empirical Base Frequencies: A 0.23373 C 0.24876 G 0.27190 T(U) 0.24562 Transition/transversion ratio = 2.000000 +-----------------------B | | +----------D | | 2------------1 +-------------F | | +--------3 | +---4 +-------------------E | | | +--------------C | +-----------------------A remember: this is an unrooted tree! Ln Likelihood = -10044.26257 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.79477 ( 0.64285, 0.94676) ** 2 B 0.78441 ( 0.63306, 0.93585) ** 2 1 0.43426 ( 0.30475, 0.56370) ** 1 D 0.35007 ( 0.27561, 0.42453) ** 1 4 0.12608 ( 0.05775, 0.19430) ** 4 3 0.30469 ( 0.21606, 0.39326) ** 3 F 0.46226 ( 0.37534, 0.54920) ** 3 E 0.65339 ( 0.54806, 0.75863) ** 4 C 0.50963 ( 0.42377, 0.59550) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 78: Empirical Base Frequencies: A 0.24209 C 0.26706 G 0.24941 T(U) 0.24144 Transition/transversion ratio = 2.000000 +----------D +---------------1 | | +---------------C | +--4 | | +---------------F | +---------3 | +-----------------E | 2----------------------B | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -10031.18599 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.67160 ( 0.53809, 0.80514) ** 2 1 0.52721 ( 0.39076, 0.66360) ** 1 D 0.35509 ( 0.28087, 0.42931) ** 1 4 0.08509 ( 0.01873, 0.15135) ** 4 C 0.54037 ( 0.45085, 0.62987) ** 4 3 0.34582 ( 0.25248, 0.43912) ** 3 F 0.50525 ( 0.41245, 0.59798) ** 3 E 0.59169 ( 0.49107, 0.69231) ** 2 B 0.75222 ( 0.61028, 0.89422) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 79: Empirical Base Frequencies: A 0.24444 C 0.25464 G 0.25908 T(U) 0.24183 Transition/transversion ratio = 2.000000 +----------D | +------------------1 +--------------------E | | +---------3 | +--2 +--------------F | | | +-------------C | 4------------------------B | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10066.23401 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.71314 ( 0.56129, 0.86509) ** 4 1 0.62877 ( 0.46454, 0.79295) ** 1 D 0.37660 ( 0.29918, 0.45403) ** 1 2 0.10486 ( 0.03519, 0.17448) ** 2 3 0.33912 ( 0.24435, 0.43394) ** 3 E 0.67297 ( 0.56113, 0.78490) ** 3 F 0.49770 ( 0.40411, 0.59117) ** 2 C 0.47380 ( 0.39135, 0.55621) ** 4 B 0.82601 ( 0.66098, 0.99103) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 80: Empirical Base Frequencies: A 0.23843 C 0.25974 G 0.25556 T(U) 0.24627 Transition/transversion ratio = 2.000000 +------------------------B | | +--------------C | +---4 | | | +--------------F 2--------------------1 +------------3 | | +----------------E | | | +--------D | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -10048.85971 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.74262 ( 0.58160, 0.90363) ** 2 B 0.81998 ( 0.65019, 0.98983) ** 2 1 0.67615 ( 0.50255, 0.84970) ** 1 4 0.14549 ( 0.07579, 0.21510) ** 4 C 0.47812 ( 0.39630, 0.55990) ** 4 3 0.41578 ( 0.31439, 0.51728) ** 3 F 0.47508 ( 0.38779, 0.56229) ** 3 E 0.55130 ( 0.45785, 0.64477) ** 1 D 0.28396 ( 0.21335, 0.35457) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 81: Empirical Base Frequencies: A 0.24392 C 0.25882 G 0.27320 T(U) 0.22405 Transition/transversion ratio = 2.000000 +----------------------------B | | +--------------C | +---4 | | | +-------------F 3------------------1 +--------2 | | +-----------------E | | | +---------D | +-------------------A remember: this is an unrooted tree! Ln Likelihood = -9959.94828 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.64290 ( 0.49781, 0.78787) ** 3 B 0.95420 ( 0.76816, 1.14033) ** 3 1 0.62091 ( 0.46494, 0.77694) ** 1 4 0.10620 ( 0.04100, 0.17140) ** 4 C 0.49250 ( 0.41344, 0.57158) ** 4 2 0.31392 ( 0.23044, 0.39737) ** 2 F 0.45793 ( 0.37572, 0.54006) ** 2 E 0.58875 ( 0.49463, 0.68287) ** 1 D 0.31288 ( 0.24486, 0.38082) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 82: Empirical Base Frequencies: A 0.25660 C 0.24784 G 0.26000 T(U) 0.23556 Transition/transversion ratio = 2.000000 +------------D +----4 | +-----------C +--------------------1 | | +--------------------E | +------3 | +----------------F | 2------------------------B | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10059.08781 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.72045 ( 0.55621, 0.88479) ** 2 1 0.68106 ( 0.49041, 0.87171) ** 1 4 0.14806 ( 0.06643, 0.22970) ** 4 D 0.43208 ( 0.35720, 0.50701) ** 4 C 0.40364 ( 0.33083, 0.47636) ** 1 3 0.21737 ( 0.12150, 0.31314) ** 3 E 0.68722 ( 0.57135, 0.80319) ** 3 F 0.57204 ( 0.46919, 0.67480) ** 2 B 0.83798 ( 0.65879, 1.01716) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 83: Empirical Base Frequencies: A 0.24065 C 0.26314 G 0.26288 T(U) 0.23333 Transition/transversion ratio = 2.000000 +-----------D +-----------------2 | | +------------C | +--3 | | +----------------F | +--------1 | +------------------E | 4---------------------B | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -10006.30855 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.85555 ( 0.68427, 1.02693) ** 4 2 0.58110 ( 0.42548, 0.73669) ** 2 D 0.39449 ( 0.32115, 0.46783) ** 2 3 0.05854 ( zero, 0.11932) * 3 C 0.42880 ( 0.35480, 0.50273) ** 3 1 0.28230 ( 0.19853, 0.36607) ** 1 F 0.54981 ( 0.45533, 0.64441) ** 1 E 0.61245 ( 0.51200, 0.71278) ** 4 B 0.74156 ( 0.58551, 0.89759) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 84: Empirical Base Frequencies: A 0.24732 C 0.25150 G 0.27346 T(U) 0.22771 Transition/transversion ratio = 2.000000 +---------D | +---------------2 +--------------F | | +------1 | +---4 +-----------------E | | | +----------------C | 3----------------------B | +--------------------------A remember: this is an unrooted tree! Ln Likelihood = -10019.69251 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.89705 ( 0.71917, 1.07503) ** 3 2 0.52995 ( 0.38036, 0.67948) ** 2 D 0.33790 ( 0.26545, 0.41043) ** 2 4 0.11426 ( 0.04766, 0.18085) ** 4 1 0.23190 ( 0.15572, 0.30816) ** 1 F 0.48306 ( 0.39845, 0.56764) ** 1 E 0.60079 ( 0.50456, 0.69701) ** 4 C 0.55159 ( 0.46397, 0.63914) ** 3 B 0.76255 ( 0.60153, 0.92363) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 85: Empirical Base Frequencies: A 0.24170 C 0.25255 G 0.25124 T(U) 0.25451 Transition/transversion ratio = 2.000000 +-----------------------B | | +-----------D | | 3-------------------1 +--------------F | | +---------2 | +--4 +------------------E | | | +------------C | +-------------------------A remember: this is an unrooted tree! Ln Likelihood = -10011.08415 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.85642 ( 0.67883, 1.03400) ** 3 B 0.78394 ( 0.61613, 0.95165) ** 3 1 0.65135 ( 0.47801, 0.82464) ** 1 D 0.38053 ( 0.30565, 0.45541) ** 1 4 0.08094 ( 0.01466, 0.14711) ** 4 2 0.31843 ( 0.23093, 0.40594) ** 2 F 0.50579 ( 0.41456, 0.59708) ** 2 E 0.62443 ( 0.52207, 0.72673) ** 4 C 0.42510 ( 0.35020, 0.49992) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 86: Empirical Base Frequencies: A 0.23516 C 0.26418 G 0.25464 T(U) 0.24601 Transition/transversion ratio = 2.000000 +------------------------B | | +---------D 3--------------2 | | +-----------------C | +----1 | | +------------------E | +----------4 | +--------------F | +------------------A remember: this is an unrooted tree! Ln Likelihood = -10041.24176 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.62076 ( 0.49420, 0.74736) ** 3 B 0.83043 ( 0.68141, 0.97937) ** 3 2 0.50418 ( 0.37299, 0.63533) ** 2 D 0.31593 ( 0.24222, 0.38964) ** 2 1 0.15359 ( 0.07808, 0.22903) ** 1 C 0.58046 ( 0.48433, 0.67655) ** 1 4 0.35417 ( 0.25527, 0.45307) ** 4 E 0.62639 ( 0.51926, 0.73358) ** 4 F 0.51034 ( 0.41513, 0.60548) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 87: Empirical Base Frequencies: A 0.24340 C 0.25804 G 0.25359 T(U) 0.24497 Transition/transversion ratio = 2.000000 +-----------------------------B | | +------------F | +---------3 | | +---------------------E 4---------------2 | | +---------------C | +--1 | +------------D | +------------------A remember: this is an unrooted tree! Ln Likelihood = -10029.45323 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.63160 ( 0.49180, 0.77135) ** 4 B 0.97603 ( 0.79087, 1.16119) ** 4 2 0.52714 ( 0.38139, 0.67295) ** 2 3 0.34309 ( 0.24631, 0.43987) ** 3 F 0.41437 ( 0.32774, 0.50102) ** 3 E 0.73491 ( 0.61673, 0.85298) ** 2 1 0.05874 ( zero, 0.13426) 1 C 0.51492 ( 0.43012, 0.59973) ** 1 D 0.43333 ( 0.35495, 0.51159) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 88: Empirical Base Frequencies: A 0.24183 C 0.25974 G 0.26941 T(U) 0.22902 Transition/transversion ratio = 2.000000 +----------------------B | | +--------------C | | 2----------------1 +-----------------E | | +-----------3 | +--4 +---------------F | | | +---------D | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -10017.41298 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.83568 ( 0.66954, 1.00173) ** 2 B 0.77073 ( 0.61259, 0.92894) ** 2 1 0.54503 ( 0.39248, 0.69756) ** 1 C 0.51221 ( 0.42627, 0.59817) ** 1 4 0.07874 ( 0.01504, 0.14233) ** 4 3 0.38704 ( 0.29013, 0.48399) ** 3 E 0.60353 ( 0.50131, 0.70574) ** 3 F 0.53220 ( 0.43682, 0.62752) ** 4 D 0.31444 ( 0.24758, 0.38122) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 89: Empirical Base Frequencies: A 0.24889 C 0.25007 G 0.26157 T(U) 0.23948 Transition/transversion ratio = 2.000000 +--------------------------B | | +----------D 3-------------2 | | +-------------C | +--4 | | +--------------F | +---------1 | +----------------E | +------------------A remember: this is an unrooted tree! Ln Likelihood = -9961.55234 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.61637 ( 0.48678, 0.74595) ** 3 B 0.90746 ( 0.74090, 1.07411) ** 3 2 0.46006 ( 0.33536, 0.58468) ** 2 D 0.34837 ( 0.27716, 0.41967) ** 2 4 0.10934 ( 0.04351, 0.17517) ** 4 C 0.46935 ( 0.39060, 0.54821) ** 4 1 0.31182 ( 0.22757, 0.39601) ** 1 F 0.48888 ( 0.40287, 0.57483) ** 1 E 0.55557 ( 0.46432, 0.64689) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 90: Empirical Base Frequencies: A 0.23033 C 0.26967 G 0.27176 T(U) 0.22824 Transition/transversion ratio = 2.000000 +---------------------B | | +----------D 2------------4 | | +----------C | +---1 | | +--------------E | +---------3 | +-------------F | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -9848.30160 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.74593 ( 0.60809, 0.88386) ** 2 B 0.73140 ( 0.59550, 0.86728) ** 2 4 0.43370 ( 0.31338, 0.55392) ** 4 D 0.37311 ( 0.30326, 0.44296) ** 4 1 0.11914 ( 0.05821, 0.17998) ** 1 C 0.34859 ( 0.28416, 0.41292) ** 1 3 0.30772 ( 0.23032, 0.38516) ** 3 E 0.50225 ( 0.41972, 0.58478) ** 3 F 0.47213 ( 0.39142, 0.55281) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 91: Empirical Base Frequencies: A 0.25020 C 0.24876 G 0.25673 T(U) 0.24431 Transition/transversion ratio = 2.000000 +------------------------B | | +---------D | +--1 | | | +-------------F 3-----------2 +----------4 | | +---------------E | | | +-------------C | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -9929.96046 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.83643 ( 0.67952, 0.99340) ** 3 B 0.83144 ( 0.67497, 0.98798) ** 3 2 0.40075 ( 0.27550, 0.52600) ** 2 1 0.06436 ( 0.01003, 0.11877) ** 1 D 0.32596 ( 0.26336, 0.38867) ** 1 4 0.34379 ( 0.26034, 0.42723) ** 4 F 0.47198 ( 0.39047, 0.55345) ** 4 E 0.52829 ( 0.44194, 0.61475) ** 2 C 0.44869 ( 0.37392, 0.52347) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 92: Empirical Base Frequencies: A 0.24954 C 0.26758 G 0.24954 T(U) 0.23333 Transition/transversion ratio = 2.000000 +-----------D +-------------1 | | +---------------C | +--3 | | +------------------E | +-----------2 | +---------------F | 4-------------------------B | +-----------------A remember: this is an unrooted tree! Ln Likelihood = -10035.91639 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 4 A 0.60008 ( 0.47571, 0.72452) ** 4 1 0.47246 ( 0.34405, 0.60082) ** 1 D 0.37840 ( 0.30254, 0.45429) ** 1 3 0.06998 ( 0.00320, 0.13672) * 3 C 0.52448 ( 0.43666, 0.61231) ** 3 2 0.38581 ( 0.28303, 0.48860) ** 2 E 0.64383 ( 0.53335, 0.75431) ** 2 F 0.52203 ( 0.42398, 0.61997) ** 4 B 0.87322 ( 0.71569, 1.03071) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 93: Empirical Base Frequencies: A 0.24078 C 0.25856 G 0.25359 T(U) 0.24706 Transition/transversion ratio = 2.000000 +---------D | +-----------------1 +------------F | | +--------4 | +---3 +-------------------E | | | +------------C | 2------------------------B | +---------------------------A remember: this is an unrooted tree! Ln Likelihood = -9995.57763 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.94040 ( 0.74457, 1.13631) ** 2 1 0.58984 ( 0.42073, 0.75891) ** 1 D 0.30353 ( 0.23663, 0.37043) ** 1 3 0.11757 ( 0.05529, 0.17979) ** 3 4 0.28714 ( 0.20758, 0.36669) ** 4 F 0.43498 ( 0.35350, 0.51637) ** 4 E 0.67298 ( 0.56812, 0.77783) ** 3 C 0.42625 ( 0.35393, 0.49853) ** 2 B 0.83729 ( 0.65607, 1.01843) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 94: Empirical Base Frequencies: A 0.23660 C 0.25595 G 0.26641 T(U) 0.24105 Transition/transversion ratio = 2.000000 +-----------D +-------------3 | | +---------------C | +--4 | | +---------------F | +------------2 | +-------------------E | 1------------------------------B | +------------------------A remember: this is an unrooted tree! Ln Likelihood = -10105.37673 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 1 A 0.83983 ( 0.66587, 1.01388) ** 1 3 0.46113 ( 0.30925, 0.61299) ** 3 D 0.38301 ( 0.30350, 0.46255) ** 3 4 0.07276 ( 0.00148, 0.14401) * 4 C 0.52562 ( 0.43590, 0.61534) ** 4 2 0.43010 ( 0.31938, 0.54085) ** 2 F 0.52052 ( 0.41797, 0.62312) ** 2 E 0.66713 ( 0.55054, 0.78365) ** 1 B 1.02929 ( 0.82265, 1.23594) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 95: Empirical Base Frequencies: A 0.24039 C 0.25725 G 0.26431 T(U) 0.23804 Transition/transversion ratio = 2.000000 +--------------------------B | | +---------------E | +----------1 | +---4 +---------------F | | | 2---------------3 +--------------C | | | +--------D | +---------------------A remember: this is an unrooted tree! Ln Likelihood = -10009.06471 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 A 0.71760 ( 0.56776, 0.86739) ** 2 B 0.89549 ( 0.72262, 1.06843) ** 2 3 0.53162 ( 0.38736, 0.67592) ** 3 4 0.11745 ( 0.05282, 0.18216) ** 4 1 0.34314 ( 0.25483, 0.43156) ** 1 E 0.53133 ( 0.43950, 0.62307) ** 1 F 0.52242 ( 0.43148, 0.61343) ** 4 C 0.50325 ( 0.42099, 0.58553) ** 3 D 0.27789 ( 0.21234, 0.34343) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 96: Empirical Base Frequencies: A 0.24745 C 0.25333 G 0.25229 T(U) 0.24693 Transition/transversion ratio = 2.000000 +-----------D | +------------------1 +---------------E | | +--------2 | +--4 +---------------F | | | +--------------C | 3-----------------------B | +---------------------------A remember: this is an unrooted tree! Ln Likelihood = -10015.29941 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.93246 ( 0.73538, 1.12960) ** 3 1 0.61051 ( 0.44182, 0.77914) ** 1 D 0.39010 ( 0.31451, 0.46570) ** 1 4 0.06047 ( zero, 0.12467) * 4 2 0.27630 ( 0.19573, 0.35691) ** 2 E 0.52071 ( 0.43248, 0.60891) ** 2 F 0.53873 ( 0.44826, 0.62930) ** 4 C 0.50198 ( 0.41989, 0.58395) ** 3 B 0.79252 ( 0.61693, 0.96800) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 97: Empirical Base Frequencies: A 0.23791 C 0.26431 G 0.25229 T(U) 0.24549 Transition/transversion ratio = 2.000000 +---------------------B | | +---------D | | 3----------------2 +---------------F | | +------------4 | +--1 +---------------E | | | +-------------C | +--------------------------A remember: this is an unrooted tree! Ln Likelihood = -10015.20210 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.88846 ( 0.71464, 1.06228) ** 3 B 0.71870 ( 0.56891, 0.86852) ** 3 2 0.54309 ( 0.39434, 0.69177) ** 2 D 0.33911 ( 0.26978, 0.40852) ** 2 1 0.07590 ( 0.01431, 0.13749) ** 1 4 0.41459 ( 0.31625, 0.51303) ** 4 F 0.50941 ( 0.41813, 0.60066) ** 4 E 0.53311 ( 0.43989, 0.62640) ** 1 C 0.45837 ( 0.38084, 0.53578) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 98: Empirical Base Frequencies: A 0.24379 C 0.25346 G 0.26366 T(U) 0.23908 Transition/transversion ratio = 2.000000 +------------D | +---------------4 +--------------F | | +---------2 | +--1 +----------------E | | | +------------C | 3------------------------B | +----------------------A remember: this is an unrooted tree! Ln Likelihood = -9987.99880 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.76561 ( 0.61129, 0.91995) ** 3 4 0.53333 ( 0.38795, 0.67879) ** 4 D 0.41211 ( 0.33692, 0.48731) ** 4 1 0.06493 ( 0.00216, 0.12758) * 1 2 0.34298 ( 0.25682, 0.42908) ** 2 F 0.47049 ( 0.38645, 0.55454) ** 2 E 0.55344 ( 0.46166, 0.64511) ** 1 C 0.43675 ( 0.36148, 0.51190) ** 3 B 0.82554 ( 0.66285, 0.98818) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 99: Empirical Base Frequencies: A 0.23255 C 0.25843 G 0.26484 T(U) 0.24418 Transition/transversion ratio = 2.000000 +------------------------B | | +--------------------E | +--1 | | | +-------------D 3----------------------2 +--------4 | | +--------------C | | | +-----------F | +--------------------A remember: this is an unrooted tree! Ln Likelihood = -10066.27801 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.69269 ( 0.53256, 0.85275) ** 3 B 0.83638 ( 0.65904, 1.01373) ** 3 2 0.74458 ( 0.55002, 0.93904) ** 2 1 0.08666 ( 0.01190, 0.16140) ** 1 E 0.68191 ( 0.57128, 0.79255) ** 1 4 0.29959 ( 0.20831, 0.39081) ** 4 D 0.44820 ( 0.36826, 0.52814) ** 4 C 0.49792 ( 0.41357, 0.58234) ** 2 F 0.41350 ( 0.32550, 0.50161) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01 Data set # 100: Empirical Base Frequencies: A 0.24209 C 0.25791 G 0.26928 T(U) 0.23072 Transition/transversion ratio = 2.000000 +----------D +------------------2 | | +-------------C | +--4 | | +----------------E | +---------1 | +--------------F | 3-------------------------B | +--------------------A remember: this is an unrooted tree! Ln Likelihood = -9960.33845 Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 3 A 0.68210 ( 0.53580, 0.82850) ** 3 2 0.62871 ( 0.47415, 0.78324) ** 2 D 0.34873 ( 0.27928, 0.41818) ** 2 4 0.05636 ( zero, 0.11779) 4 C 0.47038 ( 0.39282, 0.54787) ** 4 1 0.31633 ( 0.23275, 0.39996) ** 1 E 0.56463 ( 0.47030, 0.65893) ** 1 F 0.50490 ( 0.41636, 0.59338) ** 3 B 0.85362 ( 0.68710, 1.02015) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01