PAL2NAL output

                              M   A   K   N   I   Q   A   I   R   G   M   N   D   Y   L   P   G   E   T   A
swissprot|P60906|SYH_ECOLI    gtg gca aaa aac att caa gcc att cgc ggc atg aac gat tac ctg cct ggc gaa acg gcc
                              M   S   K   S   L   Q   A   I   R   G   M   N   D   I   L   P   E   Q   T   P
swissprot|Q02RV6|SYH_PSEAB    gtg agc aag tcc ctg caa gcc att cgt ggc atg aac gac atc ctg ccg gag cag act ccg

                              I   W   Q   R   I   E   G   T   L   K   N   V   L   G   S   Y   G   Y   S   E
swissprot|P60906|SYH_ECOLI    atc tgg cag cgc att gaa ggc aca ctg aaa aac gtg ctc ggc agc tac ggt tac agt gaa
                              A   W   R   Y   L   E   R   T   F   A   G   L   L   D   G   Y   G   Y   S   E
swissprot|Q02RV6|SYH_PSEAB    gcc tgg cgc tat ctg gaa cgc acc ttc gcc ggc ctg ctg gac ggc tac ggc tac agc gag

                              I   R   L   P   I   V   E   Q   T   P   L   F   K   R   A   I   G   E   V   T
swissprot|P60906|SYH_ECOLI    atc cgc ttg ccg att gta gag cag acc ccg cta ttc aaa cgt gcg att ggt gaa gtc acc
                              I   R   L   P   I   L   E   F   T   E   L   F   A   R   G   I   G   E   G   T
swissprot|Q02RV6|SYH_PSEAB    atc cgc ctg ccc atc ctc gag ttc acc gaa ctc ttc gcc cgc ggc atc ggc gaa ggt acc

                              D   V   V   E   K   E   M   Y   T   F   E   D   R   N   G   D   S   L   T   L
swissprot|P60906|SYH_ECOLI    gac gtg gtt gaa aaa gag atg tac acc ttt gag gat cgc aat ggc gac agc ctg act ctg
                              D   V   V   D   K   E   M   Y   T   F   L   D   R   N   G   E   S   L   T   M
swissprot|Q02RV6|SYH_PSEAB    gac gtg gtc gac aag gag atg tac acc ttc ctc gac cgc aac ggc gaa tcc ctg acc atg

                              R   P   E   G   T   A   G   C   V   R   A   G   I   E   H   G   L   L   -   Y
swissprot|P60906|SYH_ECOLI    cgc cct gaa ggg acg gcg ggc tgt gta cgc gcc ggc atc gag cat ggt ctt ctg --- tac
                              R   P   E   G   T   A   G   C   V   R   A   V   L   E   H   G   L   S   G   G
swissprot|Q02RV6|SYH_PSEAB    cgt ccg gaa ggt acc gcc ggt tgc gtg cgc gcc gtg ctg gag cac ggc ctg agc ggt ggt

                              N   Q   E   Q   R   L   W   Y   I   G   P   M   F   R   H   E   R   P   Q   K
swissprot|P60906|SYH_ECOLI    aat cag gaa cag cgt ctg tgg tat atc ggg ccg atg ttc cgt cac gag cgt ccg cag aaa
                              G   Q   V   Q   K   L   W   Y   T   G   P   M   F   R   Y   E   K   P   Q   K
swissprot|Q02RV6|SYH_PSEAB    ggc cag gtg cag aag ctc tgg tac acc ggg ccg atg ttc cgt tac gag aaa ccg cag aaa

                              G   R   Y   R   Q   F   H   Q   L   G   C   E   V   F   G   L   Q   G   P   D
swissprot|P60906|SYH_ECOLI    ggg cgt tat cgt cag ttc cat cag ttg ggc tgc gaa gtt ttc ggt ctg caa ggt ccg gat
                              G   R   Y   R   Q   F   H   Q   I   G   V   E   V   F   N   L   P   G   P   D
swissprot|Q02RV6|SYH_PSEAB    ggt cgc tac cgg cag ttc cac cag atc ggc gtg gaa gtc ttc aac ctg ccc ggt ccg gac

                              I   D   A   E   L   I   M   L   T   A   R   W   W   R   A   L   G   I   S   E
swissprot|P60906|SYH_ECOLI    atc gac gct gaa ctg att atg ctc act gcc cgc tgg tgg cgc gcg ctg ggt att tcc gag
                              I   D   A   E   L   I   I   L   T   W   R   L   W   Q   K   L   G   M   A   D
swissprot|Q02RV6|SYH_PSEAB    atc gac gcc gag ttg atc atc ctc acc tgg cgc ctg tgg cag aag ctc ggc atg gcc gac

                              H   V   T   L   E   L   N   S   I   G   S   L   E   A   R   A   N   Y   R   D
swissprot|P60906|SYH_ECOLI    cac gta act ctt gag ctg aac tct atc ggt tcg ctg gaa gca cgc gcc aat tac cgc gat
                              A   V   T   L   Q   L   N   T   L   G   S   S   E   A   R   A   R   Y   R   E
swissprot|Q02RV6|SYH_PSEAB    gcg gtg acc ctg cag ctc aac acc ctc ggt tcc agc gag gcc cgc gca cgc tat cgc gag

                              A   L   V   A   F   L   E   Q   H   K   E   K   L   D   E   D   C   K   R   R
swissprot|P60906|SYH_ECOLI    gcg ctg gtg gca ttc ctt gag cag cat aaa gaa aag ctg gac gaa gac tgc aaa cgc cgc
                              A   L   V   A   Y   L   Q   E   R   F   E   Q   L   D   E   D   S   Q   R   R
swissprot|Q02RV6|SYH_PSEAB    gcc ctg gtg gcc tat ctg cag gag cgc ttc gag caa ctc gac gaa gac agc cag cgg cgc

                              M   Y   T   N   P   L   R   V   L   D   S   K   N   P   E   V   Q   A   L   L
swissprot|P60906|SYH_ECOLI    atg tac act aac ccg ctg cgc gtg ctg gat tca aaa aat ccg gaa gtg cag gcg ctt ctc
                              M   T   T   N   P   L   R   I   L   D   S   K   V   E   S   T   Q   A   L   L
swissprot|Q02RV6|SYH_PSEAB    atg acc acc aat ccg ctg cga atc ctc gac agc aag gtg gag agc acc cag gcg ttg ctg

                              N   D   A   P   A   L   G   D   Y   L   D   E   E   S   R   E   H   F   A   G
swissprot|P60906|SYH_ECOLI    aac gac gct ccg gca tta ggt gac tat ctg gac gag gaa tct cgt gag cat ttt gcc ggt
                              V   G   A   P   T   L   H   D   Y   L   D   E   E   S   I   A   H   F   E   G
swissprot|Q02RV6|SYH_PSEAB    gtc ggc gcg ccg acc ctg cac gac tat ctc gac gaa gaa tcg atc gcc cac ttc gag ggt

                              L   C   K   L   L   E   S   A   G   I   A   Y   T   V   N   Q   R   L   V   R
swissprot|P60906|SYH_ECOLI    ctg tgc aaa ctg ctg gag agc gcg ggg atc gct tac acc gta aac cag cgt ctg gtg cgt
                              L   K   A   R   L   D   A   V   G   L   R   Y   E   I   N   Q   K   L   V   R
swissprot|Q02RV6|SYH_PSEAB    ctc aag gcc cgc ctg gat gct gtc gga ctg cgc tac gaa atc aac cag aag ctg gtg cgc

                              G   L   D   Y   Y   N   R   T   V   F   E   W   V   T   N   S   L   G   S   Q
swissprot|P60906|SYH_ECOLI    ggt ctg gat tac tac aac cgt acc gtt ttc gag tgg gtg act aac agt ctc ggc tcc cag
                              G   L   D   Y   Y   C   R   T   A   F   E   W   V   T   D   K   L   G   A   Q
swissprot|Q02RV6|SYH_PSEAB    ggc ctg gac tat tac tgc cgc acg gct ttc gag tgg gtc acc gac aag ctt ggc gcc cag

                              G   T   V   C   A   G   G   R   Y   D   G   L   V   E   Q   L   G   G   R   A
swissprot|P60906|SYH_ECOLI    ggc acc gtg tgt gca ggc ggt cgt tat gac ggt ctt gtg gaa caa ctg ggc ggt cgt gca
                              G   T   V   C   G   G   G   R   Y   D   G   L   V   S   Q   F   G   G   K   P
swissprot|Q02RV6|SYH_PSEAB    ggc acc gtt tgc ggc ggt ggc cgc tac gac ggg ctg gtc agc cag ttc ggc ggc aag ccg

                              T   P   A   V   G   F   A   M   G   L   E   R   L   V   L   L   V   Q   -   -
swissprot|P60906|SYH_ECOLI    aca ccg gct gtc ggt ttt gct atg ggc ctc gaa cgt ctt gta ttg tta gta cag --- ---
                              T   P   G   V   G   F   A   M   G   V   E   R   L   V   L   L   L   E   T   L
swissprot|Q02RV6|SYH_PSEAB    acc ccg ggc gtc ggt ttc gcc atg ggc gtg gaa cgc ctg gtg ctg ctg ctg gaa acc ttg

                              A   V   N   P   E   F   K   A   D   P   V   V   D   I   Y   L   V   A   S   G
swissprot|P60906|SYH_ECOLI    gcc gtt aat ccg gaa ttt aaa gcc gat cct gtt gtc gat ata tac ctg gtg gct tca ggt
                              G   V   I   P   A   E   L   N   R   P   -   A   D   L   Y   V   C   A   F   G
swissprot|Q02RV6|SYH_PSEAB    ggg gtg atc ccc gcc gaa ctg aac cgt ccg --- gcc gac ctc tac gtc tgc gcc ttc ggc

                              A   D   T   Q   S   A   A   M   A   L   A   E   R   L   R   D   E   L   P   G
swissprot|P60906|SYH_ECOLI    gct gat aca caa tct gcg gct atg gca tta gct gag cgt ctg cgt gat gaa tta ccg ggc
                              E   P   A   E   L   A   A   L   T   L   A   E   Q   L   R   S   A   I   P   G
swissprot|Q02RV6|SYH_PSEAB    gaa ccg gcc gag ctg gcc gcc ctg acc ctg gcc gaa cag ttg cgc agc gcc att ccc ggc

                              V   K   L   M   T   N   H   G   G   G   N   F   K   K   Q   F   A   R   A   D
swissprot|P60906|SYH_ECOLI    gtg aaa ttg atg acc aac cac ggc ggc ggc aac ttt aag aaa cag ttt gcc cgt gct gat
                              I   R   L   L   V   N   A   G   A   G   S   F   K   S   Q   F   K   K   A   D
swissprot|Q02RV6|SYH_PSEAB    ata cgc ttg ctg gtc aac gcc ggc gcc ggt agc ttc aag agc cag ttc aag aag gcc gac

                              K   W   G   A   R   V   A   V   V   L   G   E   S   E   V   A   N   G   T   A
swissprot|P60906|SYH_ECOLI    aaa tgg ggt gcc cgc gtt gct gtg gtg ctg ggt gag tct gaa gtg gct aac ggc aca gca
                              K   S   G   A   R   F   A   L   I   L   G   E   D   E   V   A   N   R   V   V
swissprot|Q02RV6|SYH_PSEAB    aag agc ggc gcg cgc ttt gcc ctg atc ctc ggg gag gac gag gtg gcc aat cgc gtg gta

                              V   V   K   D   L   R   -   S   G   E   Q   T   A   V   A   Q   D   S   V   A
swissprot|P60906|SYH_ECOLI    gta gtg aag gat ttg cgc --- tct ggt gag caa acg gca gtt gcg cag gat agc gta gcc
                              G   F   K   P   L   R   D   E   G   E   Q   Q   S   I   A   W   D   A   L   P
swissprot|Q02RV6|SYH_PSEAB    ggt ttc aag ccc ctg cgt gac gag ggc gag caa caa agc att gcc tgg gat gct ctg ccc

                              A   H   L   R   T   L   L   G   -   -
swissprot|P60906|SYH_ECOLI    gcg cat ttg cgc acg tta ctg ggt --- ---
                              E   H   L   A   A   C   L   A   Q   A
swissprot|Q02RV6|SYH_PSEAB    gag cac ctg gca gcc tgt ctg gca cag gct