Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.4.1, (Release date: Sat Aug 21 19:23:23 2021 -0700)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE fimo.fasta
Database contains 100 sequences, 2000 residues
MOTIFS motifs.meme (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
AGGARWA | 7 | AGGAAAA |
Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
AGGARWA | MEME-1 | 280 | + | 9 | 15 | 0.000144 | 0.134 | AGGAAAA |
AGGARWA | MEME-1 | 204 | + | 10 | 16 | 0.000144 | 0.134 | AGGAAAA |
AGGARWA | MEME-1 | 221 | + | 12 | 18 | 0.000289 | 0.134 | AGGAATA |
AGGARWA | MEME-1 | 227 | + | 9 | 15 | 0.000526 | 0.134 | AGGAGCA |
AGGARWA | MEME-1 | 228 | + | 9 | 15 | 0.000526 | 0.134 | AGGAGCA |
AGGARWA | MEME-1 | 229 | + | 9 | 15 | 0.000526 | 0.134 | AGGAGCA |
AGGARWA | MEME-1 | 275 | + | 9 | 15 | 0.000526 | 0.134 | AGGAACA |
AGGARWA | MEME-1 | 279 | + | 9 | 15 | 0.00108 | 0.134 | AGGTGAA |
AGGARWA | MEME-1 | 278 | + | 9 | 15 | 0.00108 | 0.134 | AGGTGAA |
AGGARWA | MEME-1 | 252 | + | 11 | 17 | 0.00108 | 0.134 | AGGAGAG |
AGGARWA | MEME-1 | 253 | + | 11 | 17 | 0.00108 | 0.134 | AGGAGAG |
AGGARWA | MEME-1 | 281 | + | 12 | 18 | 0.00108 | 0.134 | AGGAAAG |
AGGARWA | MEME-1 | 215 | + | 11 | 17 | 0.00131 | 0.134 | AGGAATC |
AGGARWA | MEME-1 | 216 | + | 11 | 17 | 0.00131 | 0.134 | AGGAATC |
AGGARWA | MEME-1 | 203 | + | 12 | 18 | 0.00149 | 0.134 | AAGAGAA |
AGGARWA | MEME-1 | 258 | + | 6 | 12 | 0.00164 | 0.134 | TGGAGTA |
AGGARWA | MEME-1 | 257 | + | 6 | 12 | 0.00164 | 0.134 | TGGAGTA |
AGGARWA | MEME-1 | 256 | + | 6 | 12 | 0.00164 | 0.134 | TGGAGTA |
AGGARWA | MEME-1 | 255 | + | 6 | 12 | 0.00164 | 0.134 | TGGAGTA |
AGGARWA | MEME-1 | 243 | + | 9 | 15 | 0.00164 | 0.134 | TGGAGTA |
AGGARWA | MEME-1 | 300 | + | 11 | 17 | 0.00164 | 0.134 | TGGAGTA |
AGGARWA | MEME-1 | 234 | + | 11 | 17 | 0.00173 | 0.134 | AGGAACC |
AGGARWA | MEME-1 | 207 | + | 6 | 12 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 261 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 273 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 272 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 270 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 268 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 263 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 271 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 265 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 264 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 262 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 260 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 269 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 267 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 259 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 266 | + | 9 | 15 | 0.00188 | 0.134 | AGGAATT |
AGGARWA | MEME-1 | 225 | + | 11 | 17 | 0.00214 | 0.135 | AGGAGTG |
AGGARWA | MEME-1 | 224 | + | 11 | 17 | 0.00214 | 0.135 | AGGAGTG |
AGGARWA | MEME-1 | 223 | + | 11 | 17 | 0.00214 | 0.135 | AGGAGTG |
AGGARWA | MEME-1 | 222 | + | 11 | 17 | 0.00214 | 0.135 | AGGAGTG |
AGGARWA | MEME-1 | 226 | + | 11 | 17 | 0.00214 | 0.135 | AGGAGTG |
AGGARWA | MEME-1 | 235 | + | 11 | 17 | 0.0025 | 0.154 | AGGAGCT |
AGGARWA | MEME-1 | 221 | + | 2 | 8 | 0.00339 | 0.205 | TGGAAAT |
AGGARWA | MEME-1 | 217 | + | 5 | 11 | 0.00433 | 0.255 | TGGAGTC |
AGGARWA | MEME-1 | 230 | + | 12 | 18 | 0.00514 | 0.297 | AGGACAA |
AGGARWA | MEME-1 | 229 | + | 12 | 18 | 0.00546 | 0.297 | AGCAATA |
AGGARWA | MEME-1 | 228 | + | 12 | 18 | 0.00546 | 0.297 | AGCAATA |
AGGARWA | MEME-1 | 227 | + | 12 | 18 | 0.00546 | 0.297 | AGCAATA |
AGGARWA | MEME-1 | 240 | + | 9 | 15 | 0.00599 | 0.319 | AAGAGAG |
AGGARWA | MEME-1 | 237 | + | 7 | 13 | 0.00792 | 0.406 | TAGAGTA |
AGGARWA | MEME-1 | 236 | + | 7 | 13 | 0.00792 | 0.406 | TAGAGTA |
AGGARWA | MEME-1 | 233 | - | 10 | 16 | 0.00864 | 0.419 | AAGAATT |
AGGARWA | MEME-1 | 232 | - | 10 | 16 | 0.00864 | 0.419 | AAGAATT |
AGGARWA | MEME-1 | 231 | - | 10 | 16 | 0.00864 | 0.419 | AAGAATT |
AGGARWA | MEME-1 | 206 | + | 12 | 18 | 0.00932 | 0.434 | AGGTGCG |
AGGARWA | MEME-1 | 205 | + | 12 | 18 | 0.00932 | 0.434 | AGGTGCG |
AGGARWA | MEME-1 | 201 | + | 2 | 8 | 0.00958 | 0.434 | AGCTAAA |
AGGARWA | MEME-1 | 277 | + | 3 | 9 | 0.00958 | 0.434 | AGCTAAA |
Command line:
fimo --oc . --verbosity 1 --thresh 0.01 motifs.meme fimo.fasta
Settings:
output_directory = . | MEME file name = motifs.meme | sequence file name = fimo.fasta |
background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.01 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.