RID: 38CS40Z9016 Job Title:RNA-directed RNA polymerase nsP4 Program: BLASTP Query: RNA-directed RNA polymerase nsP4 ID: lcl|Query_6795260(amino acid) Length: 610 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 1270 1270 100% 0.0 100.00 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 1032 1032 100% 0.0 80.16 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 1025 1025 100% 0.0 80.00 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 929 929 100% 0.0 72.50 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 923 923 100% 0.0 71.48 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 923 923 100% 0.0 72.53 2467 P13896.3 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Ross river v... NA 11032 920 920 100% 0.0 73.16 1149 P13888.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 918 918 100% 0.0 73.16 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 912 912 100% 0.0 72.18 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 910 910 100% 0.0 71.85 2467 Q9JGL0.3 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Middelburg v... NA 11023 910 910 100% 0.0 72.30 995 P03318.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 909 909 100% 0.0 72.50 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 907 907 100% 0.0 72.34 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 905 905 100% 0.0 72.43 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 903 903 100% 0.0 72.92 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 902 902 100% 0.0 72.76 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 902 902 100% 0.0 72.01 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 895 895 100% 0.0 72.82 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 894 894 100% 0.0 72.16 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11036 893 893 100% 0.0 72.16 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 892 892 100% 0.0 72.65 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 892 892 100% 0.0 72.65 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 891 891 100% 0.0 71.71 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 891 891 100% 0.0 71.88 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 883 883 100% 0.0 71.71 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 674 674 99% 0.0 55.76 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 669 669 99% 0.0 55.43 2601 Q8JJX1.1 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 65.5 65.5 62% 4e-11 24.55 1597 Q66220.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Brome mosaic... NA 12302 64.3 64.3 60% 8e-11 24.80 822 P03594.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 62.8 62.8 58% 3e-10 24.80 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 62.0 62.0 45% 5e-10 25.26 1616 P90211.1 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 58.2 58.2 45% 7e-09 26.41 1648 P69514.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 138663 57.4 57.4 68% 1e-08 24.18 1612 P89657.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Pepper mild ... NA 31745 57.4 57.4 68% 1e-08 24.18 1612 P29098.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cowpea chlor... NA 12303 56.2 56.2 27% 3e-08 27.38 808 P20179.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1890 to 2499 Score:1270 bits(3286), Expect:0.0, Method:Compositional matrix adjust., Identities:610/610(100%), Positives:610/610(100%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN Sbjct 1890 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 1949 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA Sbjct 1950 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 2009 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP Sbjct 2010 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 2069 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF Sbjct 2070 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 2129 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK Sbjct 2130 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 2189 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF Sbjct 2190 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 2249 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT Sbjct 2250 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 2309 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD Sbjct 2310 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 2369 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE Sbjct 2370 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 2429 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG Sbjct 2430 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 2489 Query 601 SPRHLYGGPK 610 SPRHLYGGPK Sbjct 2490 SPRHLYGGPK 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1904 to 2513 Score:1032 bits(2669), Expect:0.0, Method:Compositional matrix adjust., Identities:489/610(80%), Positives:537/610(88%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFS+DTGPGHLQ+KSV+QN TE +ER+ LE+IHAPVLD KEE LK RYQM PT AN Sbjct 1904 YIFSTDTGPGHLQKKSVLQNQLTEPTLERNVLERIHAPVLDTSKEEQLKLRYQMMPTEAN 1963 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 KSRYQSRKVEN KA+TT RLL GL++Y + + ECYK TYPKP+YS+SVP + P+ A Sbjct 1964 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPECYKITYPKPLYSSSVPANYSDPQFA 2023 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 VAVCNN+ HENYPTVASYQITDEYDAYLDMV+G+V+CLDTATFCPAKLRS+PK H Y P Sbjct 2024 VAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKKHEYRAP 2083 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 +RSAVPSA QNTLQNVL AATKRNCNVTQMRELP LDSA FNVECF+KYACN +YWEEF Sbjct 2084 NIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWEEF 2143 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 KPIRITTE VT+YVARLKGP+AAALFAKT+ LVPLQEVPMDRFVMDMKRDVKVTPGTK Sbjct 2144 ARKPIRITTEFVTAYVARLKGPKAAALFAKTYNLVPLQEVPMDRFVMDMKRDVKVTPGTK 2203 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIA +F Sbjct 2204 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAEHF 2263 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 PVLETDI SFDKSQDD++ALT LMILEDLGVD L+DLIECAFGEI+S HLPT T Sbjct 2264 KQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTGTR 2323 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLE+RL+ S+CAAFIGDDNIIHGVVSDK MA+ Sbjct 2324 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSRCAAFIGDDNIIHGVVSDKEMAE 2383 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATW+NMEVKIIDAVIG + PYFCGGFIL+D VT TACRV+DPLKRLFKLGKPLP DDE Sbjct 2384 RCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPADDE 2443 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 QD DRRRAL DET+AWFRVGI G L AV +RYEV + PVLLAL TF++S +AF+A+RG Sbjct 2444 QDEDRRRALLDETKAWFRVGITGTLAVAVTTRYEVDNITPVLLALRTFAQSKRAFQAIRG 2503 Query 601 SPRHLYGGPK 610 +HLYGGPK Sbjct 2504 EIKHLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1906 to 2515 Score:1025 bits(2649), Expect:0.0, Method:Compositional matrix adjust., Identities:488/610(80%), Positives:533/610(87%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFS+DTGPGHLQ KSV+QN TE +ER+ LE+I+APVLD KEE LK RYQM PT AN Sbjct 1906 YIFSTDTGPGHLQMKSVLQNQLTEPTLERNVLERIYAPVLDTSKEEQLKLRYQMMPTEAN 1965 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 KSRYQSRKVEN KA+TT RLL GL++Y + + ECYK TYPKP YS+SV + P+ A Sbjct 1966 KSRYQSRKVENQKAITTERLLSGLRLYNSATDQPECYKITYPKPSYSSSVAANYSDPKFA 2025 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 VAVCNN+ HENYPTVASYQITDEYDAYLDMV+G+V+CLDTATFCPAKLRS+PK H Y P Sbjct 2026 VAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKRHEYRAP 2085 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 +RSAVPSA QNTLQNVL AATKRNCNVTQMRELP LDSA FNVECF+KYACN +YWEEF Sbjct 2086 NIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWEEF 2145 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 KPIRITTE VT+YVARLKGP+AAALFAKTH LVPLQEVPMDRFVMDMKRDVKVTPGTK Sbjct 2146 ARKPIRITTEFVTAYVARLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGTK 2205 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIA +F Sbjct 2206 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAEHF 2265 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 PVLETDI SFDKSQDD++ALT LMILEDLGVD L+DLIECAFGEI+S HLPT T Sbjct 2266 KQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTGTR 2325 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLE+RL+ SKCAAFIGDDNIIHGVVSDK MA+ Sbjct 2326 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSKCAAFIGDDNIIHGVVSDKEMAE 2385 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATW+NMEVKIIDAVIG + PYFCGGFIL+D VT TACRV+DPLKRLFKLGKPLP DDE Sbjct 2386 RCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPADDE 2445 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 QD DRRRAL DET+AWFRVGI L AV +RYEV + PVLLAL TF++S +AF+A+RG Sbjct 2446 QDEDRRRALLDETKAWFRVGITDTLAVAVATRYEVDNITPVLLALRTFAQSKRAFQAIRG 2505 Query 601 SPRHLYGGPK 610 +HLYGGPK Sbjct 2506 EIKHLYGGPK 2515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 1819 to 2429 Score:929 bits(2400), Expect:0.0, Method:Compositional matrix adjust., Identities:443/611(73%), Positives:508/611(83%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q++ ++ EK++ P LD ++E++L + QM P+ AN Sbjct 1819 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 1878 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDV-EAECYKYTYPKPMYSASVPDRFVSPEV 119 KSRYQSRKVENMKA RL G ++Y DV Y YP+P+YS +V +RF SP+V Sbjct 1879 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 1938 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 A+A CN + NYPTVASYQITDEYDAYLDMV+GS SCLD ATFCPAKLR +PK H+Y + Sbjct 1939 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 1998 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 PT+RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP +DSAVFNVECFK+YAC+ +YWEE Sbjct 1999 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 2058 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 + ++PIRITTE +T+YV +LKGP+AAALFAKTH LVPLQEVPMDRF +DMKRDVKVTPGT Sbjct 2059 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 2118 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA++ Sbjct 2119 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 2178 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F PVLETDI SFDKSQDDSLALT LMILEDLGVD L+DLIE AFGEI+S HLPT T Sbjct 2179 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 2238 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLF+NTVLN+ IASRVLEQRL DS CAAFIGDDNI+HGV+SDK+MA Sbjct 2239 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 2298 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCA+W+NMEVKIIDAV+G K PYFCGGFI+ D VT TACRVSDPLKRLFKLGKPL +D Sbjct 2299 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 2358 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 +QD DRRRAL DE WFR G+ EL A+ SRYEV+ + +L+A+AT +R KAFK LR Sbjct 2359 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 2418 Query 600 GSPRHLYGGPK 610 G HLYGGP+ Sbjct 2419 GPVIHLYGGPR 2429 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1802 to 2411 Score:923 bits(2386), Expect:0.0, Method:Compositional matrix adjust., Identities:436/610(71%), Positives:503/610(82%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQ+SV+QN T E + E ++LEKIHAP LD KE++L+ +YQM P+ AN Sbjct 1802 YIFSSDTGPGHLQQRSVLQNCTAECIYEPAKLEKIHAPKLDKTKEDILRSKYQMKPSEAN 1861 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 KSRYQSRKVENMKA GRLLDGL Y+ + ECY+ TYP P+YS S S + A Sbjct 1862 KSRYQSRKVENMKAEIVGRLLDGLGEYLGTEHPVECYRITYPVPIYSTSDLRGLSSAKTA 1921 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 V CN F N+P+V SY+ITDEYDAYLDMV+GS SCLD ++F P++LRSFPKTHSYL+P Sbjct 1922 VRACNAFLEANFPSVTSYKITDEYDAYLDMVDGSESCLDRSSFSPSRLRSFPKTHSYLDP 1981 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 + SAVPS FQNTLQNVL+AATKRNCNVTQMRELP DSAV NVE F+KYAC D W+E+ Sbjct 1982 QINSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTYDSAVLNVEAFRKYACKPDVWDEY 2041 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 ++ PI ITTE VT+YVA+LKGP+AAALFAKTH L+PL +VPMD+F +DMKRDVKVTPGTK Sbjct 2042 RDNPICITTENVTTYVAKLKGPKAAALFAKTHNLIPLHQVPMDKFTVDMKRDVKVTPGTK 2101 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRL L PNIHTLFDMSAEDFDAIIA +F Sbjct 2102 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNNALFPNIHTLFDMSAEDFDAIIAEHF 2161 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 + VLETDI SFDKSQDDS+ALTALMILEDLGVD LM+LIE AFGEI S HLPT T Sbjct 2162 KHGDHVLETDIASFDKSQDDSMALTALMILEDLGVDQNLMNLIEAAFGEIVSTHLPTGTR 2221 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 FKFGAMMKSGMFLTLFVNT+LNVVIA RVLE +L S AFIGDDNIIHG++SDK+MAD Sbjct 2222 FKFGAMMKSGMFLTLFVNTILNVVIACRVLEDQLAQSPWPAFIGDDNIIHGIISDKLMAD 2281 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATWMNMEVKI+D+++GI+ PYFCGGFI+ D VT TACRV+DPLKRLFKLGKPLP+DD Sbjct 2282 RCATWMNMEVKILDSIVGIRPPYFCGGFIVCDDVTGTACRVADPLKRLFKLGKPLPLDDG 2341 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 QD DRRRAL DE + W RVG++ + +A+E RY V + VLLAL T S++ K+F+ +RG Sbjct 2342 QDEDRRRALHDEVKTWSRVGLRHRVCEAIEDRYAVHSSELVLLALTTLSKNLKSFRNIRG 2401 Query 601 SPRHLYGGPK 610 P HLYGGPK Sbjct 2402 KPIHLYGGPK 2411 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1860 to 2467 Score:923 bits(2386), Expect:0.0, Method:Compositional matrix adjust., Identities:441/608(73%), Positives:512/608(84%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSS+TG GHLQQKSV Q E +++R+ EK +AP LDL++E+ML+ + Q+ + N Sbjct 1860 YIFSSETGQGHLQQKSVRQCKLQEPILDRAVHEKYYAPRLDLEREKMLQKKLQLCASEGN 1919 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVE-AECYKYTYPKPMYSASVPDRFVSPEV 119 +SRYQSRKVENMKA+T RL+ GL Y++ +V ECY+ YP P+YS++V +RF S EV Sbjct 1920 RSRYQSRKVENMKAITAERLISGLGTYLSSEVNPVECYRVNYPVPIYSSTVINRFTSAEV 1979 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AV CN ENYPTVASY ITDEYDAYLDMV+G+ CLDTATFCPAKLRS+PK HSYL+ Sbjct 1980 AVKTCNLVIQENYPTVASYCITDEYDAYLDMVDGASCCLDTATFCPAKLRSYPKKHSYLQ 2039 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNV+CFKKYACN +YW+ Sbjct 2040 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVDCFKKYACNDEYWDT 2099 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 F++ PIR+TTE VT YV +LKGP+AAALFA TH L PLQE+PMD+FVMD+KRDVKVTPGT Sbjct 2100 FRDNPIRLTTENVTQYVTKLKGPKAAALFANTHNLKPLQEIPMDQFVMDLKRDVKVTPGT 2159 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA + Sbjct 2160 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2219 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F + PVLETDI SFDKS+DD++A++ALMILEDLGVD L+DLIE AFG ITSVHLPT T Sbjct 2220 FHHGDPVLETDIASFDKSEDDAIAISALMILEDLGVDQPLLDLIEAAFGNITSVHLPTGT 2279 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLFVNT++N++IASRVL +RL S CAA IGDDNI+HGVVSD +MA Sbjct 2280 RFKFGAMMKSGMFLTLFVNTLVNIMIASRVLRERLTTSACAASIGDDNIVHGVVSDTLMA 2339 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCATW+NMEVKIIDAVIGIKAPYFCGGFIL DQ+T TACRV+DPLKRLFKLGKPLPVDD Sbjct 2340 ERCATWLNMEVKIIDAVIGIKAPYFCGGFILVDQITGTACRVADPLKRLFKLGKPLPVDD 2399 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 QD DRRRAL DE W R+GI EL+KAVESRYE+ ++ +L+T + S K FK++R Sbjct 2400 TQDCDRRRALHDEAMRWNRIGITDELVKAVESRYEIILAGLIITSLSTLAESVKNFKSIR 2459 Query 600 GSPRHLYG 607 GSP LYG Sbjct 2460 GSPITLYG 2467 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN T48)] Sequence ID: P13888.2 Length: 1149 Range 1: 539 to 1149 Score:920 bits(2379), Expect:0.0, Method:Compositional matrix adjust., Identities:447/611(73%), Positives:504/611(82%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQKSV Q++ ++ E+ + P LD +E++L+ + QM+PT AN Sbjct 539 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 598 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEA-ECYKYTYPKPMYSASVPDRFVSPEV 119 KSRYQSRKVENMKAV RL DG + Y+T E Y YP+P+YS SV D +PEV Sbjct 599 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 658 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AVA CN F NYPTVASYQITDEYDAYLDMV+GS SCLD ATFCPAKLR +PK H+Y + Sbjct 659 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 718 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAV NVECFKK+ACN +YW+E Sbjct 719 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 778 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 FK+ PIRITTE +T+YV RLKGP+AAALFAKTH LVPLQEVPMDRFV+DMKRDVKVTPGT Sbjct 779 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 838 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIAA+ Sbjct 839 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 898 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F VLETDI SFDKSQDDSLALTALM+LEDLGVD L+DLIE AFGEITSVHLPT T Sbjct 899 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 958 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLFVNT+LN+VIA RVL ++L +S CAAFIGDDNI+HGV SD +MA Sbjct 959 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 1018 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCA+W+NMEVKIIDA + K PYFCGGFIL D+VT +ACRV+DPLKRLFKLGKPLP D Sbjct 1019 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 1078 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 QD DRRRAL+DET W RVG++ EL A+ SRYEV ++ A+AT ++S K FK LR Sbjct 1079 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 1138 Query 600 GSPRHLYGGPK 610 G HLYGGPK Sbjct 1139 GPIVHLYGGPK 1149 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 1870 to 2480 Score:918 bits(2373), Expect:0.0, Method:Compositional matrix adjust., Identities:447/611(73%), Positives:503/611(82%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQKSV Q++ ++ E+ + P LD +E++L+ + QM+PT AN Sbjct 1870 YIFSSDTGPGHLQQKSVRQHALPCEMLYAHEEERTYPPALDEAREKLLQAKMQMAPTEAN 1929 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEA-ECYKYTYPKPMYSASVPDRFVSPEV 119 KSRYQSRKVENMKAV RL DG + Y+ E Y YP+P+YS SV D SPEV Sbjct 1930 KSRYQSRKVENMKAVIIDRLKDGARTYLAEQSEKIPTYASKYPRPVYSPSVEDSLQSPEV 1989 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AVA CN F NYPTVASYQITDEYDAYLDMV+GS SCLD ATFCPAKLR +PK H+Y + Sbjct 1990 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2049 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAVFNVECFKK+ACN +YW+E Sbjct 2050 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNGEYWQE 2109 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 FK+ PIRITTE +T+YV RLKGP+AAALFAKTH LVPLQEVPMDRFV+DMKRDVKVTPGT Sbjct 2110 FKDDPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 2169 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIAA+ Sbjct 2170 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 2229 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F VLETDI SFDKSQDDSLALTALM+LEDLGVD L+DLIE AFGEITSVHLPT T Sbjct 2230 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEEAFGEITSVHLPTGT 2289 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLF+NT+LN+VIA RVL ++L +S CAAFIGDDNI+HGV SD +MA Sbjct 2290 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLREKLTNSICAAFIGDDNIVHGVRSDPLMA 2349 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCA+W+NMEVKIIDA + K PYFCGGFIL D VT +ACRV+DPLKRLFKLGKPLP D Sbjct 2350 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDNVTGSACRVADPLKRLFKLGKPLPAGD 2409 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 QD DRRRAL+DET W RVG++ EL A+ SRYEV ++ A+AT ++S K FK LR Sbjct 2410 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 2469 Query 600 GSPRHLYGGPK 610 G HLYGGPK Sbjct 2470 GPIVHLYGGPK 2480 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 1857 to 2467 Score:912 bits(2356), Expect:0.0, Method:Compositional matrix adjust., Identities:441/611(72%), Positives:502/611(82%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQKSV Q+ + E+I+ P D +KE++L+ + QM+PT AN Sbjct 1857 YIFSSDTGPGHLQQKSVRQHELPCETLYAHEDERIYPPAFDGEKEKVLQAKMQMAPTEAN 1916 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVE-AECYKYTYPKPMYSASVPDRFVSPEV 119 KSRYQSRKVENMKA+ RL +G K+Y+ + Y YP+P+YS SV D PEV Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSDPEV 1976 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AVA CN+F ENYPTVA+YQITDEYDAYLD+V+GS SCLD ATFCPAKLR +PK H+Y + Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP +DSAVFNVE FKKYAC +YW+E Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 FK+ PIRITTE +T+YVA+LKGP+AAALFAKTH LVPLQEVPMDRFVMDMKRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIAA+ Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F VLETDI SFDKSQDDSLALTALM+LEDLGVD L+DLIE AFGEITSVHLPT T Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLF+NT+LN+VIA RVL +L S CAAFIGDDNI+HGV SD +MA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCA+W+NMEVKIIDA + K PYFCGGFIL D V TACRV+DPLKRLFKLGKPLP DD Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 QD DRRRAL+DET W R+G++ EL A+ SRY+V V + A++T S+S K+F+ +R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKSLKSFRKIR 2456 Query 600 GSPRHLYGGPK 610 G HLYGGPK Sbjct 2457 GPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 1857 to 2467 Score:910 bits(2353), Expect:0.0, Method:Compositional matrix adjust., Identities:439/611(72%), Positives:503/611(82%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQ+SV Q+ + E+I+ P D +KE++L+ + QM+PT AN Sbjct 1857 YIFSSDTGPGHLQQRSVRQHELPCETLYAHEDERIYPPAFDGEKEKILQAKMQMAPTEAN 1916 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVE-AECYKYTYPKPMYSASVPDRFVSPEV 119 KSRYQSRKVENMKA+ RL +G K+Y+ + Y YP+P+YS SV D +PEV Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSNPEV 1976 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AVA CN+F ENYPTVA+YQITDEYDAYLD+V+GS SCLD ATFCPAKLR +PK H+Y + Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP +DSAVFNVE FKKYAC +YW+E Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 FK+ PIRITTE +T+YVA+LKGP+AAALFAKTH LVPLQEVPMDRFVMDMKRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PNIHTLFDMSAEDFDAIIAA+ Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F VLETDI SFDKSQDDSLALTALM+LEDLGVD L+DLIE AFGEITSVHLPT T Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLF+NT+LN+VIA RVL +L S CAAFIGDDNI+HGV SD +MA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCA+W+NMEVKIIDA + K PYFCGGFIL D V TACRV+DPLKRLFKLGKPLP DD Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 QD DRRRAL+DET W R+G++ EL A+ SRY+V V + A++T S++ K+F+ +R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKNLKSFRKIR 2456 Query 600 GSPRHLYGGPK 610 G HLYGGPK Sbjct 2457 GPIIHLYGGPK 2467 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Middelburg virus] Sequence ID: P03318.2 Length: 995 Range 1: 386 to 995 Score:910 bits(2353), Expect:0.0, Method:Compositional matrix adjust., Identities:441/610(72%), Positives:497/610(81%), Gaps:0/610(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQ+SV Q + + E E++ AP D +KE +L + QM+PT AN Sbjct 386 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 445 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 KSRYQSRKVENMKA RLL G K++VTP + + +PKPMYS SV S + A Sbjct 446 KSRYQSRKVENMKAEVIDRLLGGAKLFVTPTTDCRYVTHKHPKPMYSTSVAFYLSSAKTA 505 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 VA CN F NYPTV SYQITDEYDAYLDMV+GS SCLD A FCP+KLRSFPK HSY Sbjct 506 VAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKKHSYHRA 565 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAVFNVECFKKYACN DYW+EF Sbjct 566 EIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNNDYWDEF 625 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 +KPIR+TTE +TSYV RLKGP+AAALFAKT+ L PLQEVPMDRFV+DMKRDVKVTPGTK Sbjct 626 AQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVKVTPGTK 685 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAII+ +F Sbjct 686 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISEHF 745 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 VLETDI SFDKSQDDSLA T LM+LEDLGVD L++LIE +FGEITS HLPT T Sbjct 746 RPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTHLPTGTR 805 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE+RL +SKCAAFIGDDNI+HGV SDK++A+ Sbjct 806 FKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKSDKLLAE 865 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCA WMNMEVKIIDAV+ + PYFCGGFI+ DQVT T CRV+DPLKRLFKLGKPLP +D+ Sbjct 866 RCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKPLPAEDK 925 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 QD DRRRAL DE + W RVGIQ +L A+ SRYEV+ ++ V+ AL T SR+ F+ LRG Sbjct 926 QDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHNFRHLRG 985 Query 601 SPRHLYGGPK 610 LYGGPK Sbjct 986 PVIDLYGGPK 995 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1903 to 2513 Score:909 bits(2350), Expect:0.0, Method:Compositional matrix adjust., Identities:443/611(73%), Positives:494/611(80%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q + ++E EK + P LD KE++L R Q S + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDETKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDV-EAECYKYTYPKPMYSASVPDRFVSPEV 119 +SRYQSRKVENMKA RL +G ++Y+ D Y+ TYP P+YS S+ + +PE Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSINIKLSNPET 2022 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AVAVCN F NYPTVASYQ+TDEYDAYLDMV+GS SCLD ATF P+KLRS+PK HSY Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 PT+RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP +DSAVFNVECFKKYACN +YW E Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 F PIR+TTE +T YV +LKGP+AAALFAKTH L+PLQEVPMDRF MDMKRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAIIA + Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2262 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F VLETDI SFDKSQDDSLALTA+M+LEDLGVD ++DLIE AFGEI+S HLPT T Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE+RL S CAAFIGDDNIIHGVVSD +MA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 RCATWMNMEVKIIDAV+ KAPYFCGGFIL D VT T+CRV+DPLKRLFKLGKPL D Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 EQD DRRRAL DE W R G+ EL KAV SRYEVQ + V+ ++ATF+ S + FK LR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 600 GSPRHLYGGPK 610 G LYGGPK Sbjct 2503 GPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1903 to 2513 Score:907 bits(2343), Expect:0.0, Method:Compositional matrix adjust., Identities:442/611(72%), Positives:494/611(80%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q + ++E EK + P LD KE++L R Q S + AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDV-EAECYKYTYPKPMYSASVPDRFVSPEV 119 +SRYQSRKVENMKA RL +G ++Y+ D Y+ TYP P+YS S+ + +PE Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSISIKLNNPET 2022 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AVAVCN F NYPTVASYQ+TDEYDAYLDMV+GS SCLD ATF P+KLRS+PK HSY Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 PT+RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP +DSAVFNVECFKKYACN +YW E Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 F PIR+TTE +T YV +LKGP+AAALFAKTH L+PLQEVPMDRF MDMKRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAII+ + Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISTH 2262 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F VLETDI SFDKSQDDSLALTA+M+LEDLGVD ++DLIE AFGEI+S HLPT T Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE+RL S CAAFIGDDNIIHGVVSD +MA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 RCATWMNMEVKIIDAV+ KAPYFCGGFIL D VT T+CRV+DPLKRLFKLGKPL D Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 EQD DRRRAL DE W R G+ EL KAV SRYEVQ + V+ ++ATF+ S + FK LR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLITELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 600 GSPRHLYGGPK 610 G LYGGPK Sbjct 2503 GPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1904 to 2514 Score:905 bits(2340), Expect:0.0, Method:Compositional matrix adjust., Identities:444/613(72%), Positives:496/613(80%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q + ++E EK + P LD KE++L R Q S + AN Sbjct 1904 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1963 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYV---TPDVEAECYKYTYPKPMYSASVPDRFVSP 117 +SRYQSRKVENMKA RL +G ++Y+ TP V + Y+ TYP P+YS S+ + +P Sbjct 1964 RSRYQSRKVENMKATIIHRLKEGCRLYLASETPRVPS--YRVTYPAPIYSPSINIKLTNP 2021 Query 118 EVAVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSY 177 E AVAVCN F NYPTVASYQ+TDEYDAYLDMV+GS SCLD ATF P+KLRS+PK HSY Sbjct 2022 ETAVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2081 Query 178 LEPTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYW 237 PT+RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP +DSAVFNVECFKKYACN +YW Sbjct 2082 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYW 2141 Query 238 EEFKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTP 297 EF PIR+TTE +T YV +LKGP+AAALFAKTH L+PLQEVPMDRF MDMKRDVKVTP Sbjct 2142 REFASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTP 2201 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIA 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAIIA Sbjct 2202 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2261 Query 358 ANFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPT 417 +F VLETDI SFDKSQDDSLA TA+M+LEDLGVD ++DLIE AFGEI+S HLPT Sbjct 2262 THFKPGDAVLETDIASFDKSQDDSLASTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPT 2321 Query 418 ATTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKI 477 T FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE+RL S CAAFIGDDNIIHGVVSD + Sbjct 2322 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDAL 2381 Query 478 MADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPV 537 MA RCATWMNMEVKIIDAV+ KAPYFCGGFIL D VT T+CRV+DPLKRLFKLGKPL Sbjct 2382 MAARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAA 2441 Query 538 DDEQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKA 597 DEQD DRRRAL DE W R G+ EL KAV SRYEVQ + V+ ++ATF+ S + FK Sbjct 2442 GDEQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFANSKENFKK 2501 Query 598 LRGSPRHLYGGPK 610 LRG LYGGPK Sbjct 2502 LRGPVVTLYGGPK 2514 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1864 to 2474 Score:903 bits(2333), Expect:0.0, Method:Compositional matrix adjust., Identities:447/613(73%), Positives:496/613(80%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQ+SV Q +E + EK + P LD KE++L + Q S ++AN Sbjct 1864 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYV---TPDVEAECYKYTYPKPMYSASVPDRFVSP 117 +SRYQSRKVENMKA RL G K+Y+ TP V Y+ TYP P+YS + R +P Sbjct 1924 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPT--YRTTYPAPVYSPPINIRLSNP 1981 Query 118 EVAVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSY 177 E AVA CN F NYPTVASYQITDEYDAYLDMV+GS SCLD ATF P+KLRS+PK HSY Sbjct 1982 ESAVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSY 2041 Query 178 LEPTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYW 237 PT+RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAVFNVECFKK+ACN +YW Sbjct 2042 HAPTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW 2101 Query 238 EEFKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTP 297 +EF PIRITTE +T+YV +LKGP+AAALFAKTH L+PLQEVPMDRF +DMKRDVKVTP Sbjct 2102 KEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTP 2161 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIA 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAIIA Sbjct 2162 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2221 Query 358 ANFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPT 417 A+F VLETDI SFDKSQDDSLALTALM+LEDLGVD L+DLIE AFGEI+S HLPT Sbjct 2222 AHFKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPT 2281 Query 418 ATTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKI 477 T FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE RL S CAAFIGDDNIIHGVVSD++ Sbjct 2282 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDEL 2341 Query 478 MADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPV 537 MA RCATWMNMEVKIIDAV+ KAPYFCGGFIL D V TACRV+DPLKRLFKLGKPL Sbjct 2342 MAARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAA 2401 Query 538 DDEQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKA 597 DEQD DRRRAL DE W R G+ EL KAV SRYEVQ + V++++ATF+ S F+ Sbjct 2402 GDEQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEK 2461 Query 598 LRGSPRHLYGGPK 610 LRG LYGGPK Sbjct 2462 LRGPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1864 to 2474 Score:902 bits(2332), Expect:0.0, Method:Compositional matrix adjust., Identities:446/613(73%), Positives:497/613(81%), Gaps:5/613(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTGPGHLQQKSV Q+ +E EK + P LD KE++L + Q S ++AN Sbjct 1864 YIFSSDTGPGHLQQKSVRQSVLPVNTLEEVHEEKCYPPKLDEAKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYV---TPDVEAECYKYTYPKPMYSASVPDRFVSP 117 +SRYQSRKVENMKA RL G ++Y+ TP V Y+ TYP P+YS + R +P Sbjct 1924 RSRYQSRKVENMKATIIQRLKRGCRLYLMSETPKVPT--YRTTYPAPVYSPPINVRLSNP 1981 Query 118 EVAVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSY 177 E AVA CN F NYPTV+SYQITDEYDAYLDMV+GS SCLD ATF P+KLRS+PK H+Y Sbjct 1982 ESAVAACNEFLARNYPTVSSYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHAY 2041 Query 178 LEPTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYW 237 P++RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAVFNVECFKK+ACN +YW Sbjct 2042 HAPSIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYW 2101 Query 238 EEFKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTP 297 EEF PIRITTE +T+YV +LKGP+AAALFAKTH L+PLQEVPMDRF +DMKRDVKVTP Sbjct 2102 EEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTP 2161 Query 298 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIA 357 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPN+HTLFDMSAEDFDAIIA Sbjct 2162 GTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIA 2221 Query 358 ANFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPT 417 A+F VLETDI SFDKSQDDSLALTALM+LEDLGVD L+DLIE AFGEI+S HLPT Sbjct 2222 AHFKPGDTVLETDIASFDKSQDDSLALTALMLLEDLGVDHSLLDLIEAAFGEISSCHLPT 2281 Query 418 ATTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKI 477 T FKFGAMMKSGMFLTLFVNT+LN+ IASRVLE RL S CAAFIGDDNIIHGVVSD++ Sbjct 2282 GTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTKSACAAFIGDDNIIHGVVSDEL 2341 Query 478 MADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPV 537 MA RCATWMNMEVKIIDAV+ KAPYFCGGFIL D VT TACRV+DPLKRLFKLGKPL Sbjct 2342 MAARCATWMNMEVKIIDAVVSQKAPYFCGGFILHDIVTGTACRVADPLKRLFKLGKPLAA 2401 Query 538 DDEQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKA 597 DEQD DRRRAL DE W R G+ EL KAV SRYEVQ + V++++ATF+ S F+ Sbjct 2402 GDEQDEDRRRALADEVVRWQRTGLIDELEKAVYSRYEVQGISVVVMSMATFASSRSNFEK 2461 Query 598 LRGSPRHLYGGPK 610 LRG LYGGPK Sbjct 2462 LRGPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1827 to 2437 Score:902 bits(2331), Expect:0.0, Method:Compositional matrix adjust., Identities:440/611(72%), Positives:494/611(80%), Gaps:1/611(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSD GPGHLQQKSV Q+ +++R EK++ P LD KE+ L + QM T AN Sbjct 1827 YIFSSDVGPGHLQQKSVRQHDLEVPIMDRVIEEKVYPPKLDEAKEKQLLLKLQMHATDAN 1886 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVE-AECYKYTYPKPMYSASVPDRFVSPEV 119 +SRYQSRKVENMKA RL G YV+ + A Y Y KP YS V R S + Sbjct 1887 RSRYQSRKVENMKATIIDRLKQGSAYYVSAAADKAVTYHVRYAKPRYSVPVMQRLSSATI 1946 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AVA CN F NYPTVASYQITDEYDAYLDMV+GS SCLD A FCPAKLR +PK H+Y Sbjct 1947 AVATCNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRANFCPAKLRCYPKHHAYHM 2006 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP LDSAV+NVECF+KYACN +YWEE Sbjct 2007 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVYNVECFRKYACNNEYWEE 2066 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 F +KPIRITTE +T+YV +LKG +AAALFAKTH LVPLQEVPMDRF+MDMKRDVKVTPGT Sbjct 2067 FAKKPIRITTENLTTYVTKLKGGKAAALFAKTHNLVPLQEVPMDRFIMDMKRDVKVTPGT 2126 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAII+ + Sbjct 2127 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIISEH 2186 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F VLETDI SFDKSQDDSLALT LMILEDLGVD++L+DLIE AFG+ITS HLPT T Sbjct 2187 FKPGDHVLETDIASFDKSQDDSLALTGLMILEDLGVDNQLLDLIEAAFGQITSCHLPTGT 2246 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLF+NTVLN+ IASRVLE RL +S CAAFIGDDN++HGVVSDK+MA Sbjct 2247 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEARLTNSACAAFIGDDNVVHGVVSDKLMA 2306 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 DRCATW+NMEVKIIDAV+ IK PYFCGGF++ D VT TACR++DPLKRLFKLGKPLP DD Sbjct 2307 DRCATWVNMEVKIIDAVMCIKPPYFCGGFLVYDHVTRTACRIADPLKRLFKLGKPLPADD 2366 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 QD DRRRAL DE + W R G+ E+ A+ SRY ++ +LLA++TF+ S K F ALR Sbjct 2367 CQDEDRRRALYDEVKKWSRSGLGSEIEVALASRYRLEGSYNLLLAMSTFAHSMKNFSALR 2426 Query 600 GSPRHLYGGPK 610 G HLYGGPK Sbjct 2427 GPVIHLYGGPK 2437 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1887 to 2493 Score:895 bits(2312), Expect:0.0, Method:Compositional matrix adjust., Identities:442/607(73%), Positives:505/607(83%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q +E+++ER+ LE +AP LD +KEE+L+ + Q++PT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 +SRYQSRKVENMKA+T R+L GL Y+ + + ECY+ +P P+YS+SV F SP+VA Sbjct 1947 RSRYQSRKVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 2006 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 V CN EN+PTVASY I EYDAYLDMV+G+ CLDTA+FCPAKLRSFPK HSYLEP Sbjct 2007 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2066 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 T+RSAVPSA QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YWE F Sbjct 2067 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2126 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 KE PIR+T E V +Y+ +LKGP+AAALFAKTH L LQ++PMDRFVMD+KRDVKVTPGTK Sbjct 2127 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2186 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA +F Sbjct 2187 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2246 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 VLETDI SFDKS+DD++ALTALMILEDLGVD L+ LIE AFGEI+S+HLPT T Sbjct 2247 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2306 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 FKFGAMMKSGMFLTLFVNTV+N+VIASRVL +RL S CAAFIGDDNI+ GV SDK+MAD Sbjct 2307 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2366 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATW+NMEVKIIDAV+G KAPYFCGGFIL D VT TACRV+DPLKRLFKLGKPL DDE Sbjct 2367 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDE 2426 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 D DRRRAL +E+ W RVGI EL KAVESRYE +++A+ T + S K+F LRG Sbjct 2427 HDDDRRRALHEESTRWNRVGILSELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2486 Query 601 SPRHLYG 607 +P LYG Sbjct 2487 APITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1893 to 2499 Score:894 bits(2309), Expect:0.0, Method:Compositional matrix adjust., Identities:438/607(72%), Positives:508/607(83%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q +E+++ER+ LE +AP LDL KEE+L+ + Q++PT AN Sbjct 1893 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1952 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 +SRYQSR+VENMKA+TT R+L GL Y+ + + ECY+ +P P+YSASV F SP+VA Sbjct 1953 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 2012 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 V CN EN+PTVASY I EYDAYLDMV+G+ CLDTA+FCPAKLRSFPK H+YLEP Sbjct 2013 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 2072 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 T+RSAVPSA QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YWE + Sbjct 2073 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 2132 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 K+ PIR+T E V +Y+ +LKGP+AAAL+AKTH L LQ++PMDRF+MD+KRDVKVTPGTK Sbjct 2133 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 2192 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA +F Sbjct 2193 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2252 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 VLETDI SFDKS+DD++ALTALMILEDLGVD L+ LIE AFGEI+S+HLPT T Sbjct 2253 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 2312 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 F+FGAMMKSGMFLTLFVNTV+N+VIASRVL +RL +S CAAFIGDDNI+ GV SDK+MAD Sbjct 2313 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 2372 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATW+NMEVKIIDAV+G KAPYFCGGFIL D VT TACRV+DPLKRLFKLGKPL VDDE Sbjct 2373 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2432 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 D DRRRAL++E+ W RVGI EL KAVESRYE +++A+ T + S +F LRG Sbjct 2433 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVGSFGYLRG 2492 Query 601 SPRHLYG 607 +P LYG Sbjct 2493 APISLYG 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1891 to 2497 Score:893 bits(2308), Expect:0.0, Method:Compositional matrix adjust., Identities:438/607(72%), Positives:509/607(83%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q +E+++ER+ LE +AP LDL KEE+L+ + Q++PT AN Sbjct 1891 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1950 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 +SRYQSR+VENMKA+TT R+L GL Y+ + + ECY+ +P P+YSASV F SP+VA Sbjct 1951 RSRYQSRRVENMKAITTKRILQGLGHYLKSEGKVECYRTLHPVPLYSASVNRAFSSPKVA 2010 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 V CN EN+PTVASY I EYDAYLDMV+G+ CLDTA+FCPAKLRSFPK H+YLEP Sbjct 2011 VEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLEP 2070 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 T+RSAVPSA QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YWE + Sbjct 2071 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETY 2130 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 K+ PIR+T E V +Y+ +LKGP+AAAL+AKTH L LQ++PMDRF+MD+KRDVKVTPGTK Sbjct 2131 KKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGTK 2190 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA +F Sbjct 2191 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2250 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 VLETDI SFDKS+DD++ALTALMILEDLGVD L+ LIE AFGEI+S+HLPT T Sbjct 2251 QPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKTK 2310 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 F+FGAMMKSGMFLTLFVNTV+N+VIASRVL +RL +S CAAFIGDDNI+ GV SDK+MAD Sbjct 2311 FRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMAD 2370 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATW+NMEVKIIDAV+G KAPYFCGGFIL D VT TACRV+DPLKRLFKLGKPL VDDE Sbjct 2371 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2430 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 D DRRRAL++E+ W RVGI EL KAVESRYE +++A+ T + S ++F LRG Sbjct 2431 HDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLRG 2490 Query 601 SPRHLYG 607 +P LYG Sbjct 2491 APIALYG 2497 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1879 to 2485 Score:892 bits(2306), Expect:0.0, Method:Compositional matrix adjust., Identities:441/607(73%), Positives:505/607(83%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q +E+++ER+ LE +AP LD +KEE+L+ + Q++PT AN Sbjct 1879 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1938 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 +SRYQSR+VENMKA+T R+L GL Y+ + + ECY+ +P P+YS+SV F SP+VA Sbjct 1939 RSRYQSRRVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 1998 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 V CN EN+PTVASY I EYDAYLDMV+G+ CLDTA+FCPAKLRSFPK HSYLEP Sbjct 1999 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2058 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 T+RSAVPSA QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YWE F Sbjct 2059 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2118 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 KE PIR+T E V +Y+ +LKGP+AAALFAKTH L LQ++PMDRFVMD+KRDVKVTPGTK Sbjct 2119 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2178 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA +F Sbjct 2179 HTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2238 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 VLETDI SFDKS+DD++ALTALMILEDLGVD L+ LIE AFGEI+S+HLPT T Sbjct 2239 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2298 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 FKFGAMMKSGMFLTLFVNTV+N+VIASRVL +RL S CAAFIGDDNI+ GV SDK+MAD Sbjct 2299 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2358 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATW+NMEVKIIDAV+G KAPYFCGGFIL D VT TACRV+DPLKRLFKLGKPL DDE Sbjct 2359 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADDE 2418 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 D DRRRAL +E+ W RVGI EL KAVESRYE +++A+ T + S K+F LRG Sbjct 2419 HDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2478 Query 601 SPRHLYG 607 +P LYG Sbjct 2479 APITLYG 2485 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1887 to 2493 Score:892 bits(2305), Expect:0.0, Method:Compositional matrix adjust., Identities:441/607(73%), Positives:505/607(83%), Gaps:0/607(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSDTG GHLQQKSV Q +E+++ER+ LE +AP LD +KEE+L+ + Q++PT AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 +SRYQSR+VENMKA+T R+L GL Y+ + + ECY+ +P P+YS+SV F SP+VA Sbjct 1947 RSRYQSRRVENMKAITARRILQGLGHYLKAEGKVECYRTLHPVPLYSSSVNRAFSSPKVA 2006 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 V CN EN+PTVASY I EYDAYLDMV+G+ CLDTA+FCPAKLRSFPK HSYLEP Sbjct 2007 VEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLEP 2066 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEEF 240 T+RSAVPSA QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YWE F Sbjct 2067 TIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWETF 2126 Query 241 KEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGTK 300 KE PIR+T E V +Y+ +LKGP+AAALFAKTH L LQ++PMDRFVMD+KRDVKVTPGTK Sbjct 2127 KENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGTK 2186 Query 301 HTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANF 360 HTEERPKVQVIQAA+PLATA LCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA +F Sbjct 2187 HTEERPKVQVIQAADPLATADLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHF 2246 Query 361 SYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATT 420 VLETDI SFDKS+DD++ALTALMILEDLGVD L+ LIE AFGEI+S+HLPT T Sbjct 2247 QPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKTK 2306 Query 421 FKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMAD 480 FKFGAMMKSGMFLTLFVNTV+N+VIASRVL +RL S CAAFIGDDNI+ GV SDK+MAD Sbjct 2307 FKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMAD 2366 Query 481 RCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDDE 540 RCATW+NMEVKIIDAV+G KAPYFCGGFIL D VT TACRV+DPLKRLFKLGKPL VDDE Sbjct 2367 RCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDDE 2426 Query 541 QDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALRG 600 D DRRRAL +E+ W RVGI EL KAVESRYE +++A+ T + S K+F LRG Sbjct 2427 HDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLRG 2486 Query 601 SPRHLYG 607 +P LYG Sbjct 2487 APITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1864 to 2471 Score:891 bits(2302), Expect:0.0, Method:Compositional matrix adjust., Identities:436/608(72%), Positives:507/608(83%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSS+TG GHLQQKS Q ++ERS EK +AP LDL++E++L+ + Q+ + N Sbjct 1864 YIFSSETGQGHLQQKSTRQCKLQHPILERSVHEKFYAPRLDLEREKLLQRKLQLCASEGN 1923 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVE-AECYKYTYPKPMYSASVPDRFVSPEV 119 +SRYQSRKVENMKA+T RLL G+ Y++ + + ECYK YP P+YS + +RF S +V Sbjct 1924 RSRYQSRKVENMKAITAERLLQGIGAYLSAEPQPVECYKINYPVPVYSTTRSNRFSSADV 1983 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AV VCN EN+PTVASY ITDEYDAYLDMV+G+ CLDTATFCPAKLRSFPK HSYL+ Sbjct 1984 AVRVCNLVMQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLK 2043 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YWE Sbjct 2044 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWET 2103 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 FK PIR+TTE VT YV +LKGP+AAALFAKTH L PL E+PMDRFVMD+KRDVKVTPGT Sbjct 2104 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2163 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA + Sbjct 2164 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2223 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F + VLETDI SFDKS+DD++A++ALMILEDLGVD L+DLIE AFG ITSVHLPT T Sbjct 2224 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2283 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLF+NTV+N++IASRVL +RL +S CAAFIGDDNI+ GV SD +MA Sbjct 2284 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2343 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCATW+NMEVKIIDAV+G+KAPYFCGGFI+ DQ+T TACRV+DPLKRLFKLGKPLP+DD Sbjct 2344 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2403 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 +QD DRRRAL DE W R+GI EL+KAVESRY+V + V+ AL+T + + FK +R Sbjct 2404 DQDGDRRRALYDEALRWNRIGITDELVKAVESRYDVLYISLVITALSTLAATVSNFKHIR 2463 Query 600 GSPRHLYG 607 G+P LYG Sbjct 2464 GNPITLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1867 to 2474 Score:891 bits(2302), Expect:0.0, Method:Compositional matrix adjust., Identities:437/608(72%), Positives:504/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSS+TG GHLQQKS Q ++ERS EK +AP LDL++E++L+ + Q+ + N Sbjct 1867 YIFSSETGQGHLQQKSTRQCKLQNPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1926 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVE-AECYKYTYPKPMYSASVPDRFVSPEV 119 +SRYQSRKVENMKA+T RLL G+ Y++ + + ECYK YP P+YS + +RF S +V Sbjct 1927 RSRYQSRKVENMKAITAERLLQGIGAYLSAESQPVECYKVNYPVPIYSTTRSNRFSSADV 1986 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AV VCN EN+PTVASY ITDEYDAYLDMV+G+ CLDTATFCPAKLRSFPK HSYL Sbjct 1987 AVRVCNLVLQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2046 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YW+ Sbjct 2047 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDT 2106 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 FK PIR+TTE VT YV +LKGP+AAALFAKTH L PL E+PMDRFVMD+KRDVKVTPGT Sbjct 2107 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2166 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA + Sbjct 2167 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2226 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F + VLETDI SFDKS+DD++A++ALMILEDLGVD L+DLIE AFG ITSVHLPT T Sbjct 2227 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2286 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLF+NTV+N++IASRVL +RL +S CAAFIGDDNI+ GV SD +MA Sbjct 2287 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2346 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCATW+NMEVKIIDA +G+KAPYFCGGFI+ DQVT TACRV+DPLKRLFKLGKPLP+DD Sbjct 2347 ERCATWLNMEVKIIDATVGVKAPYFCGGFIVVDQVTGTACRVADPLKRLFKLGKPLPLDD 2406 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 +QD DRRRAL DE W R+GI EL+KAVESRYEV + V+ AL T + + FK +R Sbjct 2407 DQDGDRRRALYDEALRWNRIGITDELIKAVESRYEVFYISLVITALTTLAATVSNFKYIR 2466 Query 600 GSPRHLYG 607 G+P LYG Sbjct 2467 GNPITLYG 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1887 to 2494 Score:883 bits(2281), Expect:0.0, Method:Compositional matrix adjust., Identities:436/608(72%), Positives:503/608(82%), Gaps:1/608(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSS+TG GHLQQKS Q ++ERS EK +AP LDL++E++L+ + Q+ + N Sbjct 1887 YIFSSETGQGHLQQKSTRQCKLQYPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1946 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVE-AECYKYTYPKPMYSASVPDRFVSPEV 119 +SRYQSRKVENMKA+T RLL G+ Y++ + + ECYK TYP PMYS++ + F S EV Sbjct 1947 RSRYQSRKVENMKAITVERLLQGIGSYLSAEPQPVECYKVTYPAPMYSSTASNSFSSAEV 2006 Query 120 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 179 AV VCN EN+PTVASY ITDEYDAYLDMV+G+ CLDTATFCPAKLRSFPK HSYL Sbjct 2007 AVKVCNLVLQENFPTVASYNITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2066 Query 180 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 239 P +RSAVPS QNTLQNVL+AATKRNCNVTQMRELPVLDSA FNVECFKKYACN +YW+ Sbjct 2067 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDF 2126 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 299 +K PIR+T E VT YV +LKGP+AAALFAKTH L PL E+PMDRFVMD+KRDVKVTPGT Sbjct 2127 YKTNPIRLTAENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2186 Query 300 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 359 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRL AVLLPNIHTLFDMSAEDFDAIIA + Sbjct 2187 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2246 Query 360 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 419 F + VLETDI SFDKS+DD++A++ALMILEDLGVD L++LIE AFG ITSVHLPT T Sbjct 2247 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLNLIEAAFGNITSVHLPTGT 2306 Query 420 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 479 FKFGAMMKSGMFLTLF+NTV+N++IASRVL +RL S CAAFIGDDNI+ GV SD +MA Sbjct 2307 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTTSPCAAFIGDDNIVKGVTSDALMA 2366 Query 480 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 539 +RCATW+NMEVKIIDAV+G+KAPYFCGGFI+ DQ+T TACRV+DPLKRLFKLGKPLP+DD Sbjct 2367 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2426 Query 540 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 599 +QD DRRRAL DE W R+GI EL+KAVESRYEV V ++ AL T + S FK +R Sbjct 2427 DQDVDRRRALHDEAARWNRIGITEELVKAVESRYEVNYVSLIITALTTLASSVSNFKHIR 2486 Query 600 GSPRHLYG 607 G P LYG Sbjct 2487 GHPITLYG 2494 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1985 to 2592 Score:674 bits(1739), Expect:0.0, Method:Compositional matrix adjust., Identities:339/608(56%), Positives:423/608(69%), Gaps:2/608(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSD G HL Q + N+TTE+L+ S L DL E + YQM PT N Sbjct 1985 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLLAEMKKRLAYQMRPTQKN 2044 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 KSRY S KV NMK L G Y+ +K T+PKP YS + +F S A Sbjct 2045 KSRYLSAKVHNMKHKIVQCLQRGAGHYLREQHALPLWKNTFPKPRYSDACVVKFESVNTA 2104 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 + N F NYPT++S+ +TD+YDAYLDMV+G LDT TF PAK+RS PK Y +P Sbjct 2105 IVAANMFIGCNYPTLSSFGVTDKYDAYLDMVDGLNCNLDTVTFEPAKVRSLPKKSKYNQP 2164 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYAC-NTDYWEE 239 ++S VP +TLQ++L AATKRNCNVTQMRELP +DSA NVE FKK+AC +TD W E Sbjct 2165 LIQSQVPGPMASTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKKFACKDTDLWTE 2224 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVP-LQEVPMDRFVMDMKRDVKVTPG 298 F EKP+R++ + YV L+G +A + ++ P L EV MDRF +DMKRDVKVTPG Sbjct 2225 FAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAACPDLSEVAMDRFTLDMKRDVKVTPG 2284 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAA 358 TKH EERPKVQVIQAA+P+ATAYLC IHRELVRRL AVL P+IH LFDMS+EDFDAI+ Sbjct 2285 TKHVEERPKVQVIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDAIVGH 2344 Query 359 NFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTA 418 VLETDI SFDKSQD ++A+TALM+LEDLGV++ L+ LIE +FG+ITSVHLPT Sbjct 2345 GMKLGDKVLETDISSFDKSQDQAMAVTALMLLEDLGVEEDLLTLIEASFGDITSVHLPTG 2404 Query 419 TTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIM 478 T F+FG+MMKSG+FLTLFVNT+LN+ IA+RVL ++L D++CAAFIGDDN+I GVVSD +M Sbjct 2405 TRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVSDDMM 2464 Query 479 ADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVD 538 RCA+W+NMEVKI++ IG ++PYFCGGF+L D VT T RVSDP+KRL K+GKP D Sbjct 2465 VARCASWLNMEVKIMEMEIGDRSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKPALND 2524 Query 539 DEQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKAL 598 E D DR RAL +E +W+RVGIQ L A +RY V + +A+AT ++ +++ Sbjct 2525 PETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRSYLGA 2584 Query 599 RGSPRHLY 606 RG LY Sbjct 2585 RGEYVSLY 2592 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1993 to 2600 Score:669 bits(1727), Expect:0.0, Method:Compositional matrix adjust., Identities:337/608(55%), Positives:419/608(68%), Gaps:2/608(0%) Query 1 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 60 YIFSSD G HL Q + N+TTE+L+ S L DL E + YQM PT N Sbjct 1993 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLPAETRKRLAYQMRPTQKN 2052 Query 61 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDVEAECYKYTYPKPMYSASVPDRFVSPEVA 120 KSRY S KV NMK L G Y+ +K T+PKP YS + +F S A Sbjct 2053 KSRYLSAKVHNMKHKIVRCLQRGAGHYLREQHALPLWKNTFPKPRYSDACVVKFESVNTA 2112 Query 121 VAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEP 180 + N F NYPT++S+ ITD+YDAYLDMV+G LDT TF PAK+RS PK Y +P Sbjct 2113 IVAANMFIGCNYPTLSSFGITDKYDAYLDMVDGLNCNLDTVTFDPAKVRSLPKKSEYNQP 2172 Query 181 TLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYAC-NTDYWEE 239 ++S VP +TLQ++L AATKRNCNVTQMRELP +DSA NVE FK +AC +TD W E Sbjct 2173 LIQSQVPGPMTSTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKSFACKDTDLWTE 2232 Query 240 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVP-LQEVPMDRFVMDMKRDVKVTPG 298 F EKP+R++ + YV L+G +A + ++ + P L EV MDRF +DMKRDVKVTPG Sbjct 2233 FAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAVCPDLSEVAMDRFTLDMKRDVKVTPG 2292 Query 299 TKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAA 358 TKH EERPKVQ IQAA+P+ATAYLC IHRELVRRL AVL P+IH LFDMS+EDFDAI+ Sbjct 2293 TKHVEERPKVQEIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDAIVGH 2352 Query 359 NFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTA 418 VLETDI SFDKSQD ++A+TALM+L DLGV++ L+ LIE +FG+ITS HLPT Sbjct 2353 GMKLGDKVLETDISSFDKSQDQAMAVTALMLLRDLGVEEDLLTLIEASFGDITSAHLPTG 2412 Query 419 TTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIM 478 T F+FG+MMKSG+FLTLFVNT+LN+ IA+RVL ++L D++CAAFIGDDN+I GVVSD +M Sbjct 2413 TRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVSDDMM 2472 Query 479 ADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVD 538 RCA+W+NMEVKI+D IG +PYFCGGF+L D VT T RVSDP+KRL K+GKP D Sbjct 2473 VARCASWLNMEVKIMDMEIGNMSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKPALND 2532 Query 539 DEQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKAL 598 E D DR RAL +E +W+RVGIQ L A +RY V + +A+AT ++ +++ Sbjct 2533 PETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRSYLGA 2592 Query 599 RGSPRHLY 606 RG LY Sbjct 2593 RGEYVSLY 2600 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 1182 to 1548 Score:65.5 bits(158), Expect:4e-11, Method:Compositional matrix adjust., Identities:96/391(25%), Positives:151/391(38%), Gaps:38/391(9%) Query 177 YLEPTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMR-ELPVLDSAVFNVECFKKYACNTD 235 +++P LR+A L L A KRN N + + + D+A VE F Sbjct 1182 FMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKF-------- 1233 Query 236 YWEEFKEKP------IRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDM 289 W+ + K + +T E + ++++ + L V L V D + + Sbjct 1234 -WDAYVVKEFSGTDGMAMTRESFSRWLSKQESSTVGQL--ADFNFVDLPAV--DEYKHMI 1288 Query 290 KRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSA 349 K K +E P +Q I A + EL R L + + + Sbjct 1289 KSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLETIDTSKFLFYTRKT 1348 Query 350 ----EDFDAIIAANFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIEC 405 E+F + + + S +LE DI +DKSQ++ I E LG+DD L ++ Sbjct 1349 PTQIEEFFSDLDS--SQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQ 1406 Query 406 AFGEITSVHLPTATTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGD 465 + T KSG T NT++ S ++ + AAF GD Sbjct 1407 GHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIP--MDKVIKAAFCGD 1464 Query 466 DNIIH---GVVSDKIMADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVS 522 D++I+ G+ I A TW N E K+ G YFCG +++ A Sbjct 1465 DSLIYIPKGLDLPDIQAGANLTW-NFEAKLFRKKYG----YFCGRYVIHHD--RGAIVYY 1517 Query 523 DPLKRLFKLGKPLPVDDEQDHDRRRALEDET 553 DPLK + KLG D+ + RR+L D T Sbjct 1518 DPLKLISKLGCKHIRDEVHLEELRRSLCDVT 1548 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Brome mosaic virus] Sequence ID: P03594.1 Length: 822 Range 1: 282 to 629 Score:64.3 bits(155), Expect:8e-11, Method:Compositional matrix adjust., Identities:93/375(25%), Positives:152/375(40%), Gaps:37/375(9%) Query 177 YLEPTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRE-LPVLDSAVFNVECFKKYACNTD 235 Y +P + T + VL+A KRN +V +M + + + D+A + F+ N D Sbjct 282 YFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPEMGDAINMKDTAKAIAKRFRSTFLNVD 341 Query 236 YWEEFKEKPIRITTECVTSYVAR-----LKGPEAAALFAKTHQLVPLQEVPMDRFVMDMK 290 E+ + + T+C+ + L+G AA E + R+ +K Sbjct 342 G-EDCLRASMDVMTKCLEYHKKWGKHMDLQGVNVAA------------ETDLCRYQHMLK 388 Query 291 RDVK-VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPN-IHTLFDMS 348 DVK V T H E R I T+ +L+ L I + +S Sbjct 389 SDVKPVVTDTLHLE-RAVAATITFHSKGVTSNFSPFFTACFEKLSLALKSRFIVPIGKIS 447 Query 349 AEDFDAIIAANFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFG 408 + + + N + LE D+ FDKSQ + IL LG L + Sbjct 448 SLELKNVRLNNRYF----LEADLSKFDKSQGELHLEFQREILLALGFPAPLTNWWSDFHR 503 Query 409 E--ITSVHLPTATTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDD 466 + ++ H + F ++G T F NT+ V +A L D CA F GDD Sbjct 504 DSYLSDPHAKVGMSVSF--QRRTGDAFTYFGNTL--VTMAMIAYASDLSDCDCAIFSGDD 559 Query 467 NIIHGVVSDKIMADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLK 526 ++I V + D + NME+K++D + PY C F++E ++ + V DPL+ Sbjct 560 SLIISKVKPVLDTDMFTSLFNMEIKVMDPSV----PYVCSKFLVETEMGNLVS-VPDPLR 614 Query 527 RLFKLGKPLPVDDEQ 541 + +L K + DEQ Sbjct 615 EIQRLAKRKILRDEQ 629 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 1186 to 1531 Score:62.8 bits(151), Expect:3e-10, Method:Compositional matrix adjust., Identities:92/371(25%), Positives:144/371(38%), Gaps:40/371(10%) Query 177 YLEPTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMR-ELPVLDSAVFNVECFKKYACNTD 235 +L+P +R+A L L A KRN N + + + D+A VE F Sbjct 1186 FLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVEKF-------- 1237 Query 236 YWEEFKEKPIRITTECVT---SYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRD 292 W+ + +K T E S+ L E++ + QL V + V + K Sbjct 1238 -WDSYVDKEFSGTNEMTMTRESFSRWLSKQESSTV----GQLADFNFVDLPA-VDEYKHM 1291 Query 293 VKVTPGTKH----TEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMS 348 +K P K +E P +Q I A + EL R L + + + Sbjct 1292 IKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDSSKFLFYTRK 1351 Query 349 A----EDFDAIIAANFSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIE 404 EDF + + + + +LE DI +DKSQ++ I E LG+D+ L ++ + Sbjct 1352 TPAQIEDFFSDLDS--TQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWK 1409 Query 405 CAFGEITSVHLPTATTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIG 464 + T KSG T NT++ S ++ + AAF G Sbjct 1410 QGHRKTTLKDYTAGVKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIP--MDKVIKAAFCG 1467 Query 465 DDNIIH---GVVSDKIMADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRV 521 DD++I+ G+ I A W N E K+ G YFCG +++ A Sbjct 1468 DDSLIYIPKGLDLPDIQAGANLMW-NFEAKLFRKKYG----YFCGRYVIHHD--RGAIVY 1520 Query 522 SDPLKRLFKLG 532 DPLK + KLG Sbjct 1521 YDPLKLISKLG 1531 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 1323 to 1592 Score:62.0 bits(149), Expect:5e-10, Method:Compositional matrix adjust., Identities:72/285(25%), Positives:117/285(41%), Gaps:23/285(8%) Query 304 ERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAANFSYV 363 E P +Q I A I EL R++ + + + + F + ++ Sbjct 1323 EYPSLQTIVYHSKKINALFGPIFSELTRQMLSAIDTSRYLFFTRKTPEQIEEFFSDLDAH 1382 Query 364 HP--VLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATTF 421 P VLE D+ +DKSQ++ I + LG+D+ L ++ + + T Sbjct 1383 QPMEVLELDVSKYDKSQNEFHCAVEYEIWKRLGIDEFLAEVWKQGHRKTTLKDYTAGIKT 1442 Query 422 KFGAMMKSGMFLTLFVNTVLNVVIASRVL--EQRLRDSKCAAFIGDDNIIH---GVVSDK 476 KSG T NTV+ + +L E+ ++ AAF GDD++++ G Sbjct 1443 CLWYQRKSGDVTTFIGNTVIIAACMASMLPMEKVIK----AAFCGDDSLVYLPKGCELPN 1498 Query 477 IMADRCATWM-NMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPL 535 I + CA M N E K+ G YFCG +++ A DPLK + KLG Sbjct 1499 IQS--CANLMWNFEAKLFKKTYG----YFCGRYVIHHD--RGAIVYVDPLKIISKLGAKH 1550 Query 536 PVDDEQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQP 580 D E + R +L D +++ +L +AV EV + P Sbjct 1551 ITDKEHLEEFRISLADVSKSLNNCAYYAQLDEAVR---EVHKTAP 1592 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 1329 to 1600 Score:58.2 bits(139), Expect:7e-09, Method:Compositional matrix adjust., Identities:75/284(26%), Positives:111/284(39%), Gaps:20/284(7%) Query 282 MDRFVMDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNI 341 D ++ +KR K T E P +Q I + A + + L + +++ + Sbjct 1329 FDTYMHMIKRQPKSRLDTSIQSEYPALQTIVYHPKVVNAVFGPVFKYLTTKFLSMVDSSK 1388 Query 342 HTLFDMSA-EDFDAIIAANFSYV-HPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRL 399 + ED + S+ + +LE D+ +DKSQ D + I E LG+DD L Sbjct 1389 FFFYTRKKPEDLQEFFSDLSSHSDYEILELDVSKYDKSQSDFHFSIEMAIWEKLGLDDIL 1448 Query 400 MDLIECAFGEITSVHLPTATTFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKC 459 + KSG T NT +IA+ V D KC Sbjct 1449 AWMWSMGHKRTILQDFQAGIKTLIYYQRKSGDVTTFIGNT---FIIAACVASMLPLD-KC 1504 Query 460 --AAFIGDDNIIH---GVVSDKIMADRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQV 514 A+F GDD++I+ G+ I A W N E K+ G YFCG +I+ Sbjct 1505 FKASFCGDDSLIYLPKGLEYPDIQATANLVW-NFEAKLFRKKYG----YFCGKYIIHHA- 1558 Query 515 THTACRV-SDPLKRLFKLGKPLPVDDEQDHDRRRALEDETRAWF 557 C V DPLK + KLG V E + R +L D + F Sbjct 1559 --NGCIVYPDPLKLISKLGNKSLVGYEHVEEFRISLLDVAHSLF 1600 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Japan)] Sequence ID: P89657.1 Length: 1612 Range 1: 1158 to 1561 Score:57.4 bits(137), Expect:1e-08, Method:Compositional matrix adjust., Identities:103/426(24%), Positives:168/426(39%), Gaps:36/426(8%) Query 140 ITDEYDAY-LDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEPTLRSAVPSAFQNTLQNVL 198 I +EYDA + + E S++ D + ++ + L+P +R+A + L L Sbjct 1158 ILNEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENL 1217 Query 199 SAATKRNCNVTQMREL-PVLDSAVFNVECFKKYACNTDYWEEFKEKPIRITTECVTSYVA 257 A KRN N ++ + + D+A V+ F Y + K+KP I S Sbjct 1218 VAMIKRNFNSPELVGVVDIEDTASLVVDKFFD-----AYLIKEKKKPKNIPLLSRASLER 1272 Query 258 RLKGPEAAALFAKTHQLVPLQEVPM---DRFVMDMKRDVKVTPGTKHTEERPKVQVIQAA 314 ++ E + + QL + + D++ +K+ K E P +Q I Sbjct 1273 WIEKQEKSTI----GQLADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQTIVYH 1328 Query 315 EPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSA----EDFDAIIAANFSYVHPVLETD 370 A + EL R+L + + + E+F + + +N +LE D Sbjct 1329 SKKINALFGPVFSELTRQLLETIDSSRFMFYTRKTPTQIEEFFSDLDSNVPM--DILELD 1386 Query 371 IGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATTFKFGAMMKSG 430 I +DKSQ++ I + LG+DD L ++ + + T KSG Sbjct 1387 ISKYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTCLWYQRKSG 1446 Query 431 MFLTLFVNTVLNVVIASRVLE-QRLRDSKCAAFIGDDNIIH---GVVSDKIMADRCATWM 486 T NT++ S +L +RL AF GDD+I++ G I W Sbjct 1447 DVTTFIGNTIIIAACLSSMLPMERLIK---GAFCGDDSILYFPKGTDFPDIQQGANLLW- 1502 Query 487 NMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRV-SDPLKRLFKLGKPLPVDDEQDHDR 545 N E K+ G YFCG +I+ C V DPLK + KLG + E + Sbjct 1503 NFEAKLFRKRYG----YFCGRYIIHHD---RGCIVYYDPLKLISKLGAKHIKNREHLEEF 1555 Query 546 RRALED 551 R +L D Sbjct 1556 RTSLCD 1561 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Pepper mild mottle virus (strain Spain)] Sequence ID: P29098.2 Length: 1612 Range 1: 1158 to 1561 Score:57.4 bits(137), Expect:1e-08, Method:Compositional matrix adjust., Identities:103/426(24%), Positives:168/426(39%), Gaps:36/426(8%) Query 140 ITDEYDAY-LDMVEGSVSCLDTATFCPAKLRSFPKTHSYLEPTLRSAVPSAFQNTLQNVL 198 I +EYDA + + E S++ D + ++ + L+P +R+A + L L Sbjct 1158 ILNEYDAVTMQIRENSLNVKDCVLDMSKSVPLPRESETTLKPVIRTAAEKPRKPGLLENL 1217 Query 199 SAATKRNCNVTQMREL-PVLDSAVFNVECFKKYACNTDYWEEFKEKPIRITTECVTSYVA 257 A KRN N ++ + + D+A V+ F Y + K+KP I S Sbjct 1218 VAMIKRNFNSPELVGVVDIEDTASLVVDKFFD-----AYLIKEKKKPKNIPLLSRASLER 1272 Query 258 RLKGPEAAALFAKTHQLVPLQEVPM---DRFVMDMKRDVKVTPGTKHTEERPKVQVIQAA 314 ++ E + + QL + + D++ +K+ K E P +Q I Sbjct 1273 WIEKQEKSTI----GQLADFDFIDLPAVDQYRHMIKQQPKQRLDLSIQTEYPALQTIVYH 1328 Query 315 EPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSA----EDFDAIIAANFSYVHPVLETD 370 A + EL R+L + + + E+F + + +N +LE D Sbjct 1329 SKKINALFGPVFSELTRQLLETIDSSRFMFYTRKTPTQIEEFFSDLDSNVPM--DILELD 1386 Query 371 IGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTATTFKFGAMMKSG 430 I +DKSQ++ I + LG+DD L ++ + + T KSG Sbjct 1387 ISKYDKSQNEFHCAVEYEIWKRLGLDDFLAEVWKHGHRKTTLKDYTAGIKTCLWYQRKSG 1446 Query 431 MFLTLFVNTVLNVVIASRVLE-QRLRDSKCAAFIGDDNIIH---GVVSDKIMADRCATWM 486 T NT++ S +L +RL AF GDD+I++ G I W Sbjct 1447 DVTTFIGNTIIIAACLSSMLPMERLIK---GAFCGDDSILYFPKGTDFPDIQQGANLLW- 1502 Query 487 NMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRV-SDPLKRLFKLGKPLPVDDEQDHDR 545 N E K+ G YFCG +I+ C V DPLK + KLG + E + Sbjct 1503 NFEAKLFRKRYG----YFCGRYIIHHD---RGCIVYYDPLKLISKLGAKHIKNREHLEEF 1555 Query 546 RRALED 551 R +L D Sbjct 1556 RTSLCD 1561 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cowpea chlorotic mottle virus] Sequence ID: P20179.1 Length: 808 Range 1: 473 to 632 Score:56.2 bits(134), Expect:3e-08, Method:Compositional matrix adjust., Identities:46/168(27%), Positives:77/168(45%), Gaps:9/168(5%) Query 367 LETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTA-TTFKFGA 425 LE D+ FDKSQ + IL LG L + C F + + P A Sbjct 473 LEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNWW-CDFHRESMLSDPHAGVNMPVSF 531 Query 426 MMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMADRCATW 485 ++G T F NT++ + + + + D CA F GDD+++ + A+ + Sbjct 532 QRRTGDAFTYFGNTLVTMAMMAYCCDMNTVD--CAIFSGDDSLLICKSKPHLDANVFQSL 589 Query 486 MNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGK 533 NME+K++D + PY C F+LE ++ + V DP++ + +L K Sbjct 590 FNMEIKVMDPSL----PYVCSKFLLETEMNNLVS-VPDPMREIQRLAK 632