Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.5.1, (Release date: Sun Jan 29 10:33:12 2023 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE prac10_4_nogaps.fasta
Database contains 19 sequences, 12679 residues
MOTIFS results/meme.txt (Protein)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
ILYRGKBY | 8 | ILYRGKNY |
NIHLHWKR | 8 | NIHLHWKR |
KTGGLVIW | 8 | KTGGLVIW |
LKLGRRGV | 8 | LKLGRRGV |
Random model letter frequencies (--nrdb--):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
ILYRGKBY | MEME-1 | Q67XL4|reviewed|Uncharacterized/1-444 | + | 258 | 265 | 1.34e-11 | 1.68e-07 | IMYRGKNY |
ILYRGKBY | MEME-1 | Q9FYT6|reviewed|Chloroplastic/1-715 | + | 648 | 655 | 9.74e-11 | 4.06e-07 | ILYRGKNY |
ILYRGKBY | MEME-1 | Q6YYA3|reviewed|Chloroplastic/1-725 | + | 650 | 657 | 9.74e-11 | 4.06e-07 | ILYRGKNY |
ILYRGKBY | MEME-1 | Q0J7J7|reviewed|CRS2-associated/1-366 | + | 227 | 234 | 5.54e-10 | 1.6e-06 | ILYRGRNY |
ILYRGKBY | MEME-1 | Q8L7C2|reviewed|CRM-domain/1-1011 | + | 663 | 670 | 6.4e-10 | 1.6e-06 | IVYRGKNY |
ILYRGKBY | MEME-1 | Q8VYD9|reviewed|CRS2-associated/1-405 | + | 241 | 248 | 8.86e-10 | 1.73e-06 | VLYRGRNY |
ILYRGKBY | MEME-1 | F4JVH1|reviewed|CRM-domain/1-907 | + | 749 | 756 | 9.65e-10 | 1.73e-06 | IVYRGKDY |
ILYRGKBY | MEME-1 | Q657G7|reviewed|CRS2-associated/1-607 | + | 310 | 317 | 1.21e-09 | 1.9e-06 | FLYRGRNY |
ILYRGKBY | MEME-1 | Q6Z4U2|reviewed|CRS2-associated/1-428 | + | 357 | 364 | 2.28e-09 | 3.17e-06 | IVWRGKDY |
ILYRGKBY | MEME-1 | Q8VYD9|reviewed|CRS2-associated/1-405 | + | 359 | 366 | 3e-09 | 3.75e-06 | VIWRGKDY |
ILYRGKBY | MEME-1 | Q9FYT6|reviewed|Chloroplastic/1-715 | + | 433 | 440 | 3.43e-09 | 3.89e-06 | ILYRGKDF |
ILYRGKBY | MEME-1 | Q9LF10|reviewed|Chloroplastic/1-720 | + | 656 | 663 | 3.95e-09 | 3.89e-06 | LIYRGKNY |
ILYRGKBY | MEME-1 | Q9LT57|reviewed|CRM-domain/1-491 | + | 173 | 180 | 4.22e-09 | 3.89e-06 | IMFRGRNY |
ILYRGKBY | MEME-1 | Q9LF10|reviewed|Chloroplastic/1-720 | + | 442 | 449 | 4.66e-09 | 3.89e-06 | VLYRGKDF |
ILYRGKBY | MEME-1 | Q8L7C2|reviewed|CRM-domain/1-1011 | + | 459 | 466 | 4.66e-09 | 3.89e-06 | VLYRGKDF |
ILYRGKBY | MEME-1 | Q6Z4U2|reviewed|CRS2-associated/1-428 | + | 239 | 246 | 6.16e-09 | 4.82e-06 | ILYRGRHY |
ILYRGKBY | MEME-1 | Q6YYA3|reviewed|Chloroplastic/1-725 | + | 435 | 442 | 7.38e-09 | 5.44e-06 | IIYRGKDF |
ILYRGKBY | MEME-1 | A7XN92|reviewed|CRM-domain/1-842 | + | 668 | 675 | 8.98e-09 | 5.64e-06 | VVFRGKNY |
ILYRGKBY | MEME-1 | Q84N48|reviewed|CRS2-associated/1-611 | + | 314 | 321 | 9.81e-09 | 5.64e-06 | FLYRGRHY |
ILYRGKBY | MEME-1 | F4J2U9|reviewed|CRM-domain/1-881 | + | 504 | 511 | 1.03e-08 | 5.64e-06 | VFYRGKNF |
ILYRGKBY | MEME-1 | Q84N49|reviewed|CRS2-associated/1-674 | + | 265 | 272 | 1.04e-08 | 5.64e-06 | FLFRGRNY |
ILYRGKBY | MEME-1 | Q5VMQ5|reviewed|CRS2-associated/1-701 | + | 265 | 272 | 1.04e-08 | 5.64e-06 | FLFRGRNY |
ILYRGKBY | MEME-1 | Q9SL79|reviewed|CRS2-associated/1-701 | + | 323 | 330 | 1.04e-08 | 5.64e-06 | FLFRGRNY |
ILYRGKBY | MEME-1 | Q2R1U8|reviewed|CRM-domain/1-886 | + | 676 | 683 | 1.14e-08 | 5.93e-06 | VVFRGKDY |
ILYRGKBY | MEME-1 | A7XN92|reviewed|CRM-domain/1-842 | + | 454 | 461 | 1.28e-08 | 6.15e-06 | VFYRGKDF |
ILYRGKBY | MEME-1 | Q2R1U8|reviewed|CRM-domain/1-886 | + | 461 | 468 | 1.28e-08 | 6.15e-06 | VFYRGKDF |
ILYRGKBY | MEME-1 | Q8L7C2|reviewed|CRM-domain/1-1011 | + | 246 | 253 | 1.91e-08 | 8.86e-06 | LLYRGVNY |
ILYRGKBY | MEME-1 | F4J2U9|reviewed|CRM-domain/1-881 | + | 722 | 729 | 3.58e-08 | 1.6e-05 | IVYRGQDY |
ILYRGKBY | MEME-1 | A7XN92|reviewed|CRM-domain/1-842 | + | 249 | 256 | 4.83e-08 | 2.09e-05 | SLYRGVDY |
ILYRGKBY | MEME-1 | Q9LDA9|reviewed|CRS2-associated/1-564 | + | 283 | 290 | 6.2e-08 | 2.59e-05 | YLFRGRNY |
ILYRGKBY | MEME-1 | Q9LDA9|reviewed|CRS2-associated/1-564 | + | 401 | 408 | 6.48e-08 | 2.62e-05 | LMWRGREW |
ILYRGKBY | MEME-1 | Q84N49|reviewed|CRS2-associated/1-674 | + | 383 | 390 | 7.45e-08 | 2.91e-05 | LMWRGSDW |
ILYRGKBY | MEME-1 | F4JVH1|reviewed|CRM-domain/1-907 | + | 504 | 511 | 9.22e-08 | 3.49e-05 | VFYRGKSF |
ILYRGKBY | MEME-1 | Q657G7|reviewed|CRS2-associated/1-607 | + | 428 | 435 | 9.48e-08 | 3.49e-05 | LMFRGKEW |
ILYRGKBY | MEME-1 | Q5VMQ5|reviewed|CRS2-associated/1-701 | + | 383 | 390 | 1.27e-07 | 4.56e-05 | LMWRGNDW |
ILYRGKBY | MEME-1 | Q9SL79|reviewed|CRS2-associated/1-701 | + | 441 | 448 | 1.37e-07 | 4.77e-05 | LIWRGREW |
ILYRGKBY | MEME-1 | Q6YYA3|reviewed|Chloroplastic/1-725 | + | 236 | 243 | 1.8e-07 | 6.09e-05 | FVYRGSSY |
ILYRGKBY | MEME-1 | F4J2U9|reviewed|CRM-domain/1-881 | + | 301 | 308 | 2.49e-07 | 8.19e-05 | SLYRGVSY |
ILYRGKBY | MEME-1 | Q84N48|reviewed|CRS2-associated/1-611 | + | 432 | 439 | 2.85e-07 | 9.15e-05 | LMHRGKEW |
ILYRGKBY | MEME-1 | Q9FYT6|reviewed|Chloroplastic/1-715 | + | 251 | 258 | 3.26e-07 | 0.000102 | FVYRGSKY |
ILYRGKBY | MEME-1 | Q6YYA3|reviewed|Chloroplastic/1-725 | + | 426 | 433 | 4.74e-07 | 0.000145 | VILRNKDY |
ILYRGKBY | MEME-1 | Q2R1U8|reviewed|CRM-domain/1-886 | + | 256 | 263 | 4.99e-07 | 0.000149 | SLYRGVAY |
ILYRGKBY | MEME-1 | Q0J7J7|reviewed|CRS2-associated/1-366 | + | 345 | 352 | 7.03e-07 | 0.000205 | ILWRGKVK |
ILYRGKBY | MEME-1 | Q9FYT6|reviewed|Chloroplastic/1-715 | + | 424 | 431 | 9.82e-07 | 0.000279 | VILRNKDF |
ILYRGKBY | MEME-1 | Q8L7C2|reviewed|CRM-domain/1-1011 | + | 958 | 965 | 1.46e-06 | 0.000405 | ILYRGWGA |
ILYRGKBY | MEME-1 | Q0J7J7|reviewed|CRS2-associated/1-366 | + | 218 | 225 | 2.29e-06 | 0.000624 | VIYRNINI |
ILYRGKBY | MEME-1 | F4JVH1|reviewed|CRM-domain/1-907 | + | 495 | 502 | 1.55e-05 | 0.00413 | LLSRNKDF |
ILYRGKBY | MEME-1 | F4JVH1|reviewed|CRM-domain/1-907 | + | 233 | 240 | 4.57e-05 | 0.0119 | VMFRTKSK |
Command line:
fimo --norc -motif ILYRGKBY results/meme.txt prac10_4_nogaps.fasta
Settings:
output_directory = fimo_out | MEME file name = results/meme.txt | sequence file name = prac10_4_nogaps.fasta |
background file name = --nrdb-- | alphabet = Protein | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = false | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 2 |
This information can be useful in the event you wish to report a problem with the FIMO software.