******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= prac10_4_nogaps.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ A7XN92|reviewed|CRM-doma 1.0000 842 F4J2U9|reviewed|CRM-doma 1.0000 881 F4JVH1|reviewed|CRM-doma 1.0000 907 Q0J7J7|reviewed|CRS2-ass 1.0000 366 Q2R1U8|reviewed|CRM-doma 1.0000 886 Q5VMQ5|reviewed|CRS2-ass 1.0000 701 Q657G7|reviewed|CRS2-ass 1.0000 607 Q67XL4|reviewed|Uncharac 1.0000 444 Q6YYA3|reviewed|Chloropl 1.0000 725 Q6Z4U2|reviewed|CRS2-ass 1.0000 428 Q84N48|reviewed|CRS2-ass 1.0000 611 Q84N49|reviewed|CRS2-ass 1.0000 674 Q8L7C2|reviewed|CRM-doma 1.0000 1011 Q8VYD9|reviewed|CRS2-ass 1.0000 405 Q9FYT6|reviewed|Chloropl 1.0000 715 Q9LDA9|reviewed|CRS2-ass 1.0000 564 Q9LF10|reviewed|Chloropl 1.0000 720 Q9LT57|reviewed|CRM-doma 1.0000 491 Q9SL79|reviewed|CRS2-ass 1.0000 701 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme prac10_4_nogaps.fasta -o results -mod anr -minw 4 -maxw 8 -nmotifs 4 model: mod= anr nmotifs= 4 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values width: minw= 4 maxw= 8 nsites: minsites= 2 maxsites= 95 wnsites= 0.8 theta: spmap= pam spfuzz= 120 em: prior= megap b= 63395 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 12679 N= 19 sample: seed= 0 hsfrac= 0 searchsize= 12679 norand= no csites= 1000 Dirichlet mixture priors file: prior30.plib Letter frequencies in dataset: A 0.0648 C 0.00946 D 0.0589 E 0.0883 F 0.03 G 0.0607 H 0.0208 I 0.0383 K 0.0751 L 0.0967 M 0.022 N 0.037 P 0.0653 Q 0.0275 R 0.0831 S 0.0771 T 0.0472 V 0.0633 W 0.0118 Y 0.0226 Background letter frequencies (from file dataset with add-one prior applied): A 0.0648 C 0.00953 D 0.0589 E 0.0882 F 0.03 G 0.0607 H 0.0209 I 0.0383 K 0.075 L 0.0966 M 0.022 N 0.037 P 0.0653 Q 0.0276 R 0.0831 S 0.0771 T 0.0472 V 0.0632 W 0.0119 Y 0.0226 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ILYRGKBY MEME-1 width = 8 sites = 46 llr = 728 E-value = 1.2e-114 ******************************************************************************** -------------------------------------------------------------------------------- Motif ILYRGKBY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability D ::::::3: matrix E ::::::1: F 212::::2 G ::::9::: H :::::::: I 32:::::: K :::::5:: L 24:::::: M :2:::::: N ::::1:4: P :::::::: Q :::::::: R :::a:3:: S 1::::11: T :::::::: V 32:::1:: W ::2::::1 Y ::6::::6 bits 6.7 6.0 5.4 4.7 Relative 4.0 * * * Entropy 3.4 *** * (22.8 bits) 2.7 *** * 2.0 ******** 1.3 ******** 0.7 ******** 0.0 -------- Multilevel ILYRGKNY consensus V RD sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ILYRGKBY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- Q67XL4|reviewed|Uncharac 258 6.02e-12 VLDVHEGNTI IMYRGKNY VQPPTEIMSP Q9FYT6|reviewed|Chloropl 648 3.25e-11 VEKLTTSHAI ILYRGKNY RRPAKSSFSN Q6YYA3|reviewed|Chloropl 650 3.25e-11 IERFTTSHAI ILYRGKNY RRPTKSAPSN Q8L7C2|reviewed|CRM-doma 663 2.17e-10 VEMVSKGYAI IVYRGKNY ERPQCLRPQT Q0J7J7|reviewed|CRS2-ass 227 2.90e-10 KVIYRNINIL ILYRGRNY DPKQRPQIPL F4JVH1|reviewed|CRM-doma 749 5.96e-10 VDKISKGYAV IVYRGKDY KRPTTLRPKN Q657G7|reviewed|CRS2-ass 310 7.40e-10 KVIHRVGGVV FLYRGRNY NPRTRPRYPL Q8VYD9|reviewed|CRS2-ass 241 8.96e-10 QVVSKHSGTL VLYRGRNY DPKKRPKIPL Q9LF10|reviewed|Chloropl 656 1.62e-09 IEKLKEGHAI LIYRGKNY KRPSSKLMAQ Q9LT57|reviewed|CRM-doma 173 2.11e-09 VINIHNVKTI IMFRGRNY RQPKNLIPVN Q6Z4U2|reviewed|CRS2-ass 357 2.11e-09 IIVSFDKEQI IVWRGKDY NGTIQDNTQK Q9FYT6|reviewed|Chloropl 433 2.48e-09 TVILRNKDFI ILYRGKDF LPGGVAQTVI Q8VYD9|reviewed|CRS2-ass 359 2.93e-09 ILVTFDKEQV VIWRGKDY KPPKEDDEYS Q6YYA3|reviewed|Chloropl 435 3.47e-09 TVILRNKDYI IIYRGKDF LPGGVAESVI Q6Z4U2|reviewed|CRS2-ass 239 4.03e-09 LIIHRHGGQL ILYRGRHY NPKKRPVIPL Q9LF10|reviewed|Chloropl 442 5.69e-09 VLILRNKYLI VLYRGKDF LSDEVADLVE Q8L7C2|reviewed|CRM-doma 459 5.69e-09 TLISRDKDFI VLYRGKDF LPSAVSSAIE F4J2U9|reviewed|CRM-doma 504 5.69e-09 IMLSRNKDFL VFYRGKNF LSREVADALV Q9SL79|reviewed|CRS2-ass 323 7.56e-09 KVIYRRGGVL FLFRGRNY NHRTRPRFPL Q84N49|reviewed|CRS2-ass 265 7.56e-09 KVIHRQGGVI FLFRGRNY NYRTRPCFPL Q84N48|reviewed|CRS2-ass 314 7.56e-09 KVIHRVGGVV FLYRGRHY DPKTRPRYPL Q5VMQ5|reviewed|CRS2-ass 265 7.56e-09 KVIHHQGGVI FLFRGRNY NYRTRPIYPL A7XN92|reviewed|CRM-doma 668 7.56e-09 VDKVSKGYAI VVFRGKNY RRPSSLRPRN Q8L7C2|reviewed|CRM-doma 246 1.05e-08 LVIWRSGSKI LLYRGVNY QYPYFVSDRD Q2R1U8|reviewed|CRM-doma 461 1.05e-08 VMLSRNNDFM VFYRGKDF LSPELAEKLL F4J2U9|reviewed|CRM-doma 722 1.05e-08 IDKVTKGYAI IVYRGQDY KRPTMLRPKN A7XN92|reviewed|CRM-doma 454 1.05e-08 VMLSRNNEFI VFYRGKDF LSSELAEVLL Q2R1U8|reviewed|CRM-doma 676 1.30e-08 VDKVSKGYAI VVFRGKDY ARPSKLRPRN Q9LDA9|reviewed|CRS2-ass 283 3.84e-08 EIIHRVGGVV YLFRGRNY NYRTRPQYPL A7XN92|reviewed|CRM-doma 249 3.84e-08 LVIWRSGTSV SLYRGVDY DEPEPTKKSK F4JVH1|reviewed|CRM-doma 504 6.52e-08 MLLSRNKDFL VFYRGKSF LSLEVGEALM Q84N49|reviewed|CRS2-ass 383 1.08e-07 ILLSFEFEHI LMWRGSDW KSSLPPLENS Q6YYA3|reviewed|Chloropl 236 1.08e-07 LVVWTRGGIH FVYRGSSY LENAKRHRDF Q5VMQ5|reviewed|CRS2-ass 383 1.36e-07 TLLSFEFEHI LMWRGNDW KSSLPPLEEN Q9LDA9|reviewed|CRS2-ass 401 1.48e-07 VLLSFDDEQI LMWRGREW KSRFVDNPLI Q657G7|reviewed|CRS2-ass 428 1.60e-07 VLLSFDNEQI LMFRGKEW KSRYPKPLTL F4J2U9|reviewed|CRM-doma 301 1.87e-07 LVIWRSGTSI SLYRGVSY ELPSGKWNKQ Q9SL79|reviewed|CRS2-ass 441 2.34e-07 VLVSFENEQI LIWRGREW KSSLTTPDKK Q9FYT6|reviewed|Chloropl 251 2.34e-07 LVVWTKGDMH FVYRGSKY QQNAKHSHTF Q2R1U8|reviewed|CRM-doma 256 3.69e-07 LVIWRSGTSV SLYRGVAY DIPEPTKGTS Q84N48|reviewed|CRS2-ass 432 5.72e-07 VLLSFDDEQI LMHRGKEW KSRYSKPLTL Q6YYA3|reviewed|Chloropl 426 6.63e-07 RNLKRLTGGT VILRNKDY IIIYRGKDFL Q8L7C2|reviewed|CRM-doma 958 1.35e-06 LLVSQEPSKV ILYRGWGA EEEMKSFYPN Q0J7J7|reviewed|CRS2-ass 345 1.35e-06 VPLLFKDEQI ILWRGKVK QENSVSLQFS Q9FYT6|reviewed|Chloropl 424 1.90e-06 WNLKHLTGGT VILRNKDF IILYRGKDFL Q0J7J7|reviewed|CRS2-ass 218 2.34e-06 FHLEDKTGGK VIYRNINI LILYRGRNYD -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ILYRGKBY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- Q67XL4|reviewed|Uncharac 6e-12 257_[1]_179 Q9FYT6|reviewed|Chloropl 1.9e-06 250_[1]_165_[1]_1_[1]_207_[1]_60 Q6YYA3|reviewed|Chloropl 6.6e-07 235_[1]_182_[1]_1_[1]_207_[1]_68 Q8L7C2|reviewed|CRM-doma 1.3e-06 245_[1]_205_[1]_196_[1]_287_[1]_46 Q0J7J7|reviewed|CRS2-ass 1.3e-06 217_[1]_1_[1]_110_[1]_14 F4JVH1|reviewed|CRM-doma 6.5e-08 503_[1]_237_[1]_151 Q657G7|reviewed|CRS2-ass 1.6e-07 309_[1]_110_[1]_172 Q8VYD9|reviewed|CRS2-ass 2.9e-09 240_[1]_110_[1]_39 Q9LF10|reviewed|Chloropl 1.6e-09 441_[1]_206_[1]_57 Q9LT57|reviewed|CRM-doma 2.1e-09 172_[1]_311 Q6Z4U2|reviewed|CRS2-ass 2.1e-09 238_[1]_110_[1]_64 F4J2U9|reviewed|CRM-doma 1.9e-07 300_[1]_195_[1]_210_[1]_152 Q9SL79|reviewed|CRS2-ass 2.3e-07 322_[1]_110_[1]_253 Q84N49|reviewed|CRS2-ass 1.1e-07 264_[1]_110_[1]_284 Q84N48|reviewed|CRS2-ass 5.7e-07 313_[1]_110_[1]_172 Q5VMQ5|reviewed|CRS2-ass 1.4e-07 264_[1]_110_[1]_311 A7XN92|reviewed|CRM-doma 3.8e-08 248_[1]_197_[1]_206_[1]_167 Q2R1U8|reviewed|CRM-doma 3.7e-07 255_[1]_197_[1]_207_[1]_203 Q9LDA9|reviewed|CRS2-ass 1.5e-07 282_[1]_110_[1]_156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ILYRGKBY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ILYRGKBY width=8 seqs=46 Q67XL4|reviewed|Uncharac ( 258) IMYRGKNY 1 Q9FYT6|reviewed|Chloropl ( 648) ILYRGKNY 1 Q6YYA3|reviewed|Chloropl ( 650) ILYRGKNY 1 Q8L7C2|reviewed|CRM-doma ( 663) IVYRGKNY 1 Q0J7J7|reviewed|CRS2-ass ( 227) ILYRGRNY 1 F4JVH1|reviewed|CRM-doma ( 749) IVYRGKDY 1 Q657G7|reviewed|CRS2-ass ( 310) FLYRGRNY 1 Q8VYD9|reviewed|CRS2-ass ( 241) VLYRGRNY 1 Q9LF10|reviewed|Chloropl ( 656) LIYRGKNY 1 Q9LT57|reviewed|CRM-doma ( 173) IMFRGRNY 1 Q6Z4U2|reviewed|CRS2-ass ( 357) IVWRGKDY 1 Q9FYT6|reviewed|Chloropl ( 433) ILYRGKDF 1 Q8VYD9|reviewed|CRS2-ass ( 359) VIWRGKDY 1 Q6YYA3|reviewed|Chloropl ( 435) IIYRGKDF 1 Q6Z4U2|reviewed|CRS2-ass ( 239) ILYRGRHY 1 Q9LF10|reviewed|Chloropl ( 442) VLYRGKDF 1 Q8L7C2|reviewed|CRM-doma ( 459) VLYRGKDF 1 F4J2U9|reviewed|CRM-doma ( 504) VFYRGKNF 1 Q9SL79|reviewed|CRS2-ass ( 323) FLFRGRNY 1 Q84N49|reviewed|CRS2-ass ( 265) FLFRGRNY 1 Q84N48|reviewed|CRS2-ass ( 314) FLYRGRHY 1 Q5VMQ5|reviewed|CRS2-ass ( 265) FLFRGRNY 1 A7XN92|reviewed|CRM-doma ( 668) VVFRGKNY 1 Q8L7C2|reviewed|CRM-doma ( 246) LLYRGVNY 1 Q2R1U8|reviewed|CRM-doma ( 461) VFYRGKDF 1 F4J2U9|reviewed|CRM-doma ( 722) IVYRGQDY 1 A7XN92|reviewed|CRM-doma ( 454) VFYRGKDF 1 Q2R1U8|reviewed|CRM-doma ( 676) VVFRGKDY 1 Q9LDA9|reviewed|CRS2-ass ( 283) YLFRGRNY 1 A7XN92|reviewed|CRM-doma ( 249) SLYRGVDY 1 F4JVH1|reviewed|CRM-doma ( 504) VFYRGKSF 1 Q84N49|reviewed|CRS2-ass ( 383) LMWRGSDW 1 Q6YYA3|reviewed|Chloropl ( 236) FVYRGSSY 1 Q5VMQ5|reviewed|CRS2-ass ( 383) LMWRGNDW 1 Q9LDA9|reviewed|CRS2-ass ( 401) LMWRGREW 1 Q657G7|reviewed|CRS2-ass ( 428) LMFRGKEW 1 F4J2U9|reviewed|CRM-doma ( 301) SLYRGVSY 1 Q9SL79|reviewed|CRS2-ass ( 441) LIWRGREW 1 Q9FYT6|reviewed|Chloropl ( 251) FVYRGSKY 1 Q2R1U8|reviewed|CRM-doma ( 256) SLYRGVAY 1 Q84N48|reviewed|CRS2-ass ( 432) LMHRGKEW 1 Q6YYA3|reviewed|Chloropl ( 426) VILRNKDY 1 Q8L7C2|reviewed|CRM-doma ( 958) ILYRGWGA 1 Q0J7J7|reviewed|CRS2-ass ( 345) ILWRGKVK 1 Q9FYT6|reviewed|Chloropl ( 424) VILRNKDF 1 Q0J7J7|reviewed|CRS2-ass ( 218) VIYRNINI 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ILYRGKBY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 12546 bayes= 8.48992 E= 1.2e-114 -334 -248 -617 -585 226 -504 -419 292 -539 85 -214 -461 -573 -408 -555 -29 -317 211 -389 -1 -598 -463 -913 -880 153 -809 -682 199 -844 217 276 -778 -800 -612 -818 -797 -578 144 -519 -508 -670 -490 -754 -793 256 -716 13 -545 -731 -114 -528 -572 -762 -548 -706 -662 -634 -604 364 473 -738 -575 -792 -882 -764 -706 -594 -766 -612 -803 -777 -697 -761 -604 358 -777 -737 -854 -663 -716 -336 -385 -426 -534 -545 392 -445 -538 -503 -642 -511 48 -578 -452 -528 -411 -471 -541 -495 -490 -458 -479 -566 -469 -609 -535 -336 -84 270 -537 -450 -70 -613 -8 163 -28 -421 39 79 -469 -142 -455 250 -1 -550 -129 104 -560 -157 -610 -519 326 -543 -290 -489 -18 -362 -156 -589 -444 -146 -270 -475 -490 267 -484 -140 -83 -186 -379 -321 -389 -517 -365 -485 -395 -392 -381 321 470 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ILYRGKBY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 46 E= 1.2e-114 0.000000 0.000000 0.000000 0.000000 0.152174 0.000000 0.000000 0.304348 0.000000 0.173913 0.000000 0.000000 0.000000 0.000000 0.000000 0.065217 0.000000 0.282609 0.000000 0.021739 0.000000 0.000000 0.000000 0.000000 0.086957 0.000000 0.000000 0.152174 0.000000 0.434783 0.152174 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.173913 0.000000 0.021739 0.000000 0.000000 0.043478 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.152174 0.608696 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.934783 0.000000 0.000000 0.000000 0.000000 0.000000 0.065217 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021739 0.500000 0.000000 0.000000 0.021739 0.000000 0.021739 0.260870 0.065217 0.000000 0.086957 0.021739 0.000000 0.021739 0.000000 0.347826 0.086957 0.000000 0.021739 0.043478 0.000000 0.021739 0.000000 0.000000 0.369565 0.000000 0.000000 0.000000 0.065217 0.000000 0.021739 0.000000 0.000000 0.021739 0.000000 0.000000 0.000000 0.195652 0.000000 0.000000 0.021739 0.021739 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.608696 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ILYRGKBY MEME-1 regular expression -------------------------------------------------------------------------------- [IV]LYRG[KR][ND]Y -------------------------------------------------------------------------------- Time 10.50 secs. ******************************************************************************** ******************************************************************************** MOTIF NIHLHWKR MEME-2 width = 8 sites = 19 llr = 399 E-value = 1.2e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif NIHLHWKR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::1:::: probability D 2::1:::: matrix E 1::::::: F :::::::1 G 1::::::: H ::9:9::2 I :5:::::: K ::::::91 L 11:31::: M 14:1:::: N 5::2:::1 P :::::::: Q :::2:::: R ::::::14 S :::2:::: T :::::::: V :1:::::: W :::::a:: Y ::1::::3 bits 6.7 * 6.0 * 5.4 * ** 4.7 * ** Relative 4.0 * ** Entropy 3.4 ** *** (30.3 bits) 2.7 *** **** 2.0 ******** 1.3 ******** 0.7 ******** 0.0 -------- Multilevel NIHLHWKR consensus M Y sequence H -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NIHLHWKR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- Q8L7C2|reviewed|CRM-doma 612 3.36e-12 RRGVFDGTIE NMHLHWKY RELVKIICNE Q2R1U8|reviewed|CRM-doma 625 3.36e-12 RRGVFDGTIE NMHLHWKY RELVKILVKA F4JVH1|reviewed|CRM-doma 698 3.36e-12 RRGVFDGTVE NMHLHWKY RELIKILVKA F4J2U9|reviewed|CRM-doma 671 3.36e-12 RRGVFDGTVE NMHLHWKY RELVKIIVKA A7XN92|reviewed|CRM-doma 617 3.36e-12 RRGVFDGTIE NMHLHWKY RELVKILVKA Q84N49|reviewed|CRS2-ass 218 4.69e-11 RDGLTHNMLE NIHSHWKR KRVCKIKCKG Q5VMQ5|reviewed|CRS2-ass 218 4.69e-11 RDGLTHNMLE NIHSHWKR KRVCKIKCKG Q9LT57|reviewed|CRM-doma 125 6.65e-11 VRGVFGGVVQ NMHMHWKF HETVQVCCDN Q9FYT6|reviewed|Chloropl 597 8.58e-11 RRGIFDGVIE EIHQHWKH KEVVKVITKQ Q6YYA3|reviewed|Chloropl 599 8.58e-11 RRGVFEGVIE EIHQHWKH KEVVKVITKQ Q67XL4|reviewed|Uncharac 210 1.25e-10 RRGIYQGVIL NMHLHWKK HQTLQVVIKT Q0J7J7|reviewed|CRS2-ass 180 1.40e-10 KGGVTHNMID DIHNHWKR AEAVRIKCLG Q6Z4U2|reviewed|CRS2-ass 192 4.15e-10 RDGLTHNMLN DIHNHWKN DEAVRVKCLG Q84N48|reviewed|CRS2-ass 267 7.19e-10 RDGLTHNMLE MIHCHWRR QEICKVRCRG Q657G7|reviewed|CRS2-ass 263 7.19e-10 RDGLTHNMLE MIHCHWRR QEICKVRCRG Q9LDA9|reviewed|CRS2-ass 236 1.49e-09 RDGFTHNMLE LIHSHWKR RRVCKVRCKG Q9LF10|reviewed|Chloropl 605 2.32e-09 RRGVFFGVME GLHQHWKH REVAKVITMQ Q9SL79|reviewed|CRS2-ass 276 7.49e-09 RDGLTHNMLN NIHDLWKR RRVCKIKCKG Q8VYD9|reviewed|CRS2-ass 194 1.05e-08 RDGLTHNMLN DVYNHWKH AEAVRVKCLG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NIHLHWKR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- Q8L7C2|reviewed|CRM-doma 3.4e-12 611_[2]_392 Q2R1U8|reviewed|CRM-doma 3.4e-12 624_[2]_254 F4JVH1|reviewed|CRM-doma 3.4e-12 697_[2]_202 F4J2U9|reviewed|CRM-doma 3.4e-12 670_[2]_203 A7XN92|reviewed|CRM-doma 3.4e-12 616_[2]_218 Q84N49|reviewed|CRS2-ass 4.7e-11 217_[2]_449 Q5VMQ5|reviewed|CRS2-ass 4.7e-11 217_[2]_476 Q9LT57|reviewed|CRM-doma 6.7e-11 124_[2]_359 Q9FYT6|reviewed|Chloropl 8.6e-11 596_[2]_111 Q6YYA3|reviewed|Chloropl 8.6e-11 598_[2]_119 Q67XL4|reviewed|Uncharac 1.3e-10 209_[2]_227 Q0J7J7|reviewed|CRS2-ass 1.4e-10 179_[2]_179 Q6Z4U2|reviewed|CRS2-ass 4.2e-10 191_[2]_229 Q84N48|reviewed|CRS2-ass 7.2e-10 266_[2]_337 Q657G7|reviewed|CRS2-ass 7.2e-10 262_[2]_337 Q9LDA9|reviewed|CRS2-ass 1.5e-09 235_[2]_321 Q9LF10|reviewed|Chloropl 2.3e-09 604_[2]_108 Q9SL79|reviewed|CRS2-ass 7.5e-09 275_[2]_418 Q8VYD9|reviewed|CRS2-ass 1.1e-08 193_[2]_204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NIHLHWKR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NIHLHWKR width=8 seqs=19 Q8L7C2|reviewed|CRM-doma ( 612) NMHLHWKY 1 Q2R1U8|reviewed|CRM-doma ( 625) NMHLHWKY 1 F4JVH1|reviewed|CRM-doma ( 698) NMHLHWKY 1 F4J2U9|reviewed|CRM-doma ( 671) NMHLHWKY 1 A7XN92|reviewed|CRM-doma ( 617) NMHLHWKY 1 Q84N49|reviewed|CRS2-ass ( 218) NIHSHWKR 1 Q5VMQ5|reviewed|CRS2-ass ( 218) NIHSHWKR 1 Q9LT57|reviewed|CRM-doma ( 125) NMHMHWKF 1 Q9FYT6|reviewed|Chloropl ( 597) EIHQHWKH 1 Q6YYA3|reviewed|Chloropl ( 599) EIHQHWKH 1 Q67XL4|reviewed|Uncharac ( 210) NMHLHWKK 1 Q0J7J7|reviewed|CRS2-ass ( 180) DIHNHWKR 1 Q6Z4U2|reviewed|CRS2-ass ( 192) DIHNHWKN 1 Q84N48|reviewed|CRS2-ass ( 267) MIHCHWRR 1 Q657G7|reviewed|CRS2-ass ( 263) MIHCHWRR 1 Q9LDA9|reviewed|CRS2-ass ( 236) LIHSHWKR 1 Q9LF10|reviewed|Chloropl ( 605) GLHQHWKH 1 Q9SL79|reviewed|CRS2-ass ( 276) NIHDLWKR 1 Q8VYD9|reviewed|CRS2-ass ( 194) DVYNHWKH 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NIHLHWKR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 12546 bayes= 11.1814 E= 1.2e-069 -268 -336 136 33 -418 -20 -201 -402 -260 -103 201 366 -417 -150 -358 -234 -242 -413 -455 -324 -420 -292 -735 -725 -253 -658 -593 369 -695 -37 393 -614 -680 -529 -713 -631 -402 18 -463 -424 -403 -259 -356 -442 -175 -432 535 -405 -476 -390 -303 -144 -471 -80 -324 -342 -325 -417 -236 118 -152 307 -15 -191 -234 -262 -143 -167 -159 136 105 183 -335 227 -238 83 -141 -198 -293 -197 -457 -319 -416 -503 -289 -476 541 -449 -531 -111 -358 -210 -523 -146 -387 -405 -386 -474 -335 -132 -459 -308 -497 -546 -170 -467 -403 -423 -511 -349 -354 -429 -555 -379 -500 -499 -444 -434 631 -183 -342 -269 -490 -480 -488 -450 -344 -345 358 -484 -374 -321 -489 -313 -69 -445 -352 -458 -392 -413 -363 -338 -425 -393 95 -439 317 -378 -17 -408 -342 45 -513 -183 200 -378 -338 -413 -229 347 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NIHLHWKR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 19 E= 1.2e-069 0.000000 0.000000 0.157895 0.105263 0.000000 0.052632 0.000000 0.000000 0.000000 0.052632 0.105263 0.526316 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.526316 0.000000 0.052632 0.368421 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.947368 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.105263 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.315789 0.052632 0.157895 0.000000 0.157895 0.000000 0.157895 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.947368 0.000000 0.000000 0.052632 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.894737 0.000000 0.000000 0.000000 0.000000 0.000000 0.105263 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.052632 0.000000 0.210526 0.000000 0.052632 0.000000 0.000000 0.052632 0.000000 0.000000 0.368421 0.000000 0.000000 0.000000 0.000000 0.263158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NIHLHWKR MEME-2 regular expression -------------------------------------------------------------------------------- N[IM]HLHWK[RYH] -------------------------------------------------------------------------------- Time 18.88 secs. ******************************************************************************** ******************************************************************************** MOTIF KTGGLVIW MEME-3 width = 8 sites = 15 llr = 297 E-value = 4.5e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTGGLVIW MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability D :::::::: matrix E ::::1::: F :::::::: G ::aa:::: H :::::::4 I :1:::18: K a:::3::: L ::::6::1 M :::::::: N :::::::: P :::::::: Q :::::::: R :::::::: S :1:::::: T :7:::::: V :1:::92: W :::::::5 Y :::::::1 bits 6.7 6.0 5.4 4.7 Relative 4.0 * ** ** Entropy 3.4 * ** *** (28.5 bits) 2.7 **** *** 2.0 ******** 1.3 ******** 0.7 ******** 0.0 -------- Multilevel KTGGLVIW consensus K VH sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGLVIW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- Q8L7C2|reviewed|CRM-doma 232 3.63e-11 MKRTHDVLET KTGGLVIW RSGSKILLYR Q2R1U8|reviewed|CRM-doma 242 3.63e-11 MRLFHEILER KTGGLVIW RSGTSVSLYR F4JVH1|reviewed|CRM-doma 288 3.63e-11 MRRMHEILER KTGGLVIW RSGTSIALYN F4J2U9|reviewed|CRM-doma 287 3.63e-11 MRKMHEILEK KTGGLVIW RSGTSISLYR A7XN92|reviewed|CRM-doma 235 3.63e-11 MRLFHEILER KTGGLVIW RSGTSVSLYR Q9FYT6|reviewed|Chloropl 237 2.77e-10 MDRAREILEI KTGGLVVW TKGDMHFVYR Q6YYA3|reviewed|Chloropl 222 2.77e-10 MDRAREILEI KTGGLVVW TRGGIHFVYR Q6Z4U2|reviewed|CRS2-ass 225 3.48e-10 MQNVCHQLED KTGGLIIH RHGGQLILYR Q84N48|reviewed|CRS2-ass 300 1.41e-09 MKNLCYHLEE KSGGKVIH RVGGVVFLYR Q657G7|reviewed|CRS2-ass 296 1.41e-09 MKNLCYHLEE KSGGKVIH RVGGVVFLYR Q84N49|reviewed|CRS2-ass 251 1.55e-09 MDNICHQLEE KVGGKVIH RQGGVIFLFR Q5VMQ5|reviewed|CRS2-ass 251 1.55e-09 MDNVCQQLEE KVGGKVIH HQGGVIFLFR Q9LDA9|reviewed|CRS2-ass 269 3.00e-09 MNNVCRVLEE KTGGEIIH RVGGVVYLFR Q9SL79|reviewed|CRS2-ass 309 7.22e-09 MDNVCEQLEE KIGGKVIY RRGGVLFLFR Q9LF10|reviewed|Chloropl 273 1.49e-08 MERAQEIIEM KTGGLVVL SKKEFLVVYR -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGLVIW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- Q8L7C2|reviewed|CRM-doma 3.6e-11 231_[3]_772 Q2R1U8|reviewed|CRM-doma 3.6e-11 241_[3]_637 F4JVH1|reviewed|CRM-doma 3.6e-11 287_[3]_612 F4J2U9|reviewed|CRM-doma 3.6e-11 286_[3]_587 A7XN92|reviewed|CRM-doma 3.6e-11 234_[3]_600 Q9FYT6|reviewed|Chloropl 2.8e-10 236_[3]_471 Q6YYA3|reviewed|Chloropl 2.8e-10 221_[3]_496 Q6Z4U2|reviewed|CRS2-ass 3.5e-10 224_[3]_196 Q84N48|reviewed|CRS2-ass 1.4e-09 299_[3]_304 Q657G7|reviewed|CRS2-ass 1.4e-09 295_[3]_304 Q84N49|reviewed|CRS2-ass 1.5e-09 250_[3]_416 Q5VMQ5|reviewed|CRS2-ass 1.5e-09 250_[3]_443 Q9LDA9|reviewed|CRS2-ass 3e-09 268_[3]_288 Q9SL79|reviewed|CRS2-ass 7.2e-09 308_[3]_385 Q9LF10|reviewed|Chloropl 1.5e-08 272_[3]_440 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGLVIW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTGGLVIW width=8 seqs=15 Q8L7C2|reviewed|CRM-doma ( 232) KTGGLVIW 1 Q2R1U8|reviewed|CRM-doma ( 242) KTGGLVIW 1 F4JVH1|reviewed|CRM-doma ( 288) KTGGLVIW 1 F4J2U9|reviewed|CRM-doma ( 287) KTGGLVIW 1 A7XN92|reviewed|CRM-doma ( 235) KTGGLVIW 1 Q9FYT6|reviewed|Chloropl ( 237) KTGGLVVW 1 Q6YYA3|reviewed|Chloropl ( 222) KTGGLVVW 1 Q6Z4U2|reviewed|CRS2-ass ( 225) KTGGLIIH 1 Q84N48|reviewed|CRS2-ass ( 300) KSGGKVIH 1 Q657G7|reviewed|CRS2-ass ( 296) KSGGKVIH 1 Q84N49|reviewed|CRS2-ass ( 251) KVGGKVIH 1 Q5VMQ5|reviewed|CRS2-ass ( 251) KVGGKVIH 1 Q9LDA9|reviewed|CRS2-ass ( 269) KTGGEIIH 1 Q9SL79|reviewed|CRS2-ass ( 309) KIGGKVIY 1 Q9LF10|reviewed|Chloropl ( 273) KTGGLVVL 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGLVIW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 12546 bayes= 8.7737 E= 4.5e-038 -368 -292 -510 -507 -507 -466 -370 -372 363 -509 -402 -347 -510 -344 -147 -470 -379 -485 -414 -435 -242 -146 -389 -460 -332 -407 -316 22 -362 -386 -217 -179 -438 -241 -398 65 383 41 -367 -354 -308 -344 -399 -507 -504 398 -410 -507 -475 -600 -482 -322 -534 -420 -497 -383 -438 -510 -453 -452 -308 -344 -399 -507 -504 398 -410 -507 -475 -600 -482 -322 -534 -420 -497 -383 -438 -510 -453 -452 -316 -327 -352 -37 -379 -397 -219 -293 205 241 -258 -253 -474 -106 -151 -349 -289 -346 -392 -325 -210 -157 -501 -511 -304 -489 -412 178 -502 -251 -225 -441 -500 -414 -511 -452 -236 365 -475 -419 -317 -218 -493 -526 -263 -497 -461 423 -474 -128 -120 -402 -550 -396 -540 -434 -280 156 -415 -319 -544 -349 -621 -664 -25 -576 413 -396 -591 -55 -381 -426 -624 -401 -562 -527 -493 -459 516 208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGLVIW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 15 E= 4.5e-038 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.066667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.133333 0.666667 0.133333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.066667 0.000000 0.000000 0.000000 0.000000 0.333333 0.600000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.133333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.866667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.000000 0.066667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.466667 0.066667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTGGLVIW MEME-3 regular expression -------------------------------------------------------------------------------- KTGG[LK]V[IV][WH] -------------------------------------------------------------------------------- Time 27.02 secs. ******************************************************************************** ******************************************************************************** MOTIF LKLGRRGV MEME-4 width = 8 sites = 41 llr = 533 E-value = 1.9e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif LKLGRRGV MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1:1:: pos.-specific C 3:::2::: probability D :::1:2:: matrix E :::::::: F :::::::: G :::6::a: H :::::::: I 1:2::::1 K :5:131:: L 326::::2 M :::::::: N :2:::2:: P :::::::: Q :::::::: R :::142:: S :::::::: T 1::::::: V 2:1::::6 W :::::::: Y :::::::: bits 6.7 6.0 5.4 4.7 Relative 4.0 * Entropy 3.4 * (18.8 bits) 2.7 * * 2.0 ***** ** 1.3 ******** 0.7 ******** 0.0 -------- Multilevel CKLGRRGV consensus LNI KN L sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LKLGRRGV MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- Q9SL79|reviewed|CRS2-ass 380 3.70e-10 RRKGRELMPI CKLGKNGV YCDLVKNVKE Q84N49|reviewed|CRS2-ass 322 3.70e-10 RTRGHQLPPI CKLGKNGV YANLVNQVRE Q5VMQ5|reviewed|CRS2-ass 322 3.70e-10 RKRGRQLPPI CKLGKNGV YLNLVKQVRE Q9SL79|reviewed|CRS2-ass 287 1.92e-08 IHDLWKRRRV CKIKCKGV CTVDMDNVCE Q84N49|reviewed|CRS2-ass 229 1.92e-08 IHSHWKRKRV CKIKCKGV CTIDMDNICH Q84N48|reviewed|CRS2-ass 278 1.92e-08 IHCHWRRQEI CKVRCRGV PTVDMKNLCY Q657G7|reviewed|CRS2-ass 274 1.92e-08 IHCHWRRQEI CKVRCRGV PTVDMKNLCY Q5VMQ5|reviewed|CRS2-ass 229 1.92e-08 IHSHWKRKRV CKIKCKGV CTVDMDNVCQ Q9LDA9|reviewed|CRS2-ass 247 5.33e-08 IHSHWKRRRV CKVRCKGV PTVDMNNVCR Q84N48|reviewed|CRS2-ass 371 1.13e-07 RRKGRDLLPI CKLAKNGI YITLVKDVRD Q657G7|reviewed|CRS2-ass 367 1.13e-07 RRRGKDLLPI CKLAKNGI YIYLVRDVRD Q9LDA9|reviewed|CRS2-ass 340 1.28e-07 RVKGKSLRPI CKLSKNGV YVSLVKDVRD Q84N48|reviewed|CRS2-ass 253 1.77e-07 VKPHISHNRQ LNIGRDGL THNMLEMIHC Q657G7|reviewed|CRS2-ass 249 1.77e-07 VKPHISHNRQ LNIGRDGL THNMLEMIHC Q5VMQ5|reviewed|CRS2-ass 204 1.77e-07 VKATLKTKRQ LNIGRDGL THNMLENIHS Q8VYD9|reviewed|CRS2-ass 180 2.00e-07 LCQRNKTKRQ VNLGRDGL THNMLNDVYN Q8L7C2|reviewed|CRM-doma 598 2.24e-07 RKIGLKMKPF LLLGRRGV FDGTIENMHL Q6YYA3|reviewed|Chloropl 585 2.24e-07 RKIGLKMDEH VLLGRRGV FEGVIEEIHQ Q2R1U8|reviewed|CRM-doma 611 2.24e-07 RKLGLRMKAF LLLGRRGV FDGTIENMHL F4JVH1|reviewed|CRM-doma 684 2.24e-07 QKLGLKMKAF LLLGRRGV FDGTVENMHL F4J2U9|reviewed|CRM-doma 657 2.24e-07 RKLGLKMKAF LLLGRRGV FDGTVENMHL A7XN92|reviewed|CRM-doma 603 2.24e-07 RKLGLRMKAF LLLGRRGV FDGTIENMHL Q6Z4U2|reviewed|CRS2-ass 178 3.08e-07 KCQKSRTKKQ INLGRDGL THNMLNDIHN Q8L7C2|reviewed|CRM-doma 185 4.22e-07 RTVGIRLTKK LKIGKAGI TEGIVNGIHE Q9SL79|reviewed|CRS2-ass 262 5.76e-07 VTSCLKTTRQ LNMGRDGL THNMLNNIHD Q84N49|reviewed|CRS2-ass 204 5.76e-07 VKGSLKSKRQ LNMGRDGL THNMLENIHS Q9LDA9|reviewed|CRS2-ass 222 6.32e-07 IKPHMHDNRQ VNLGRDGF THNMLELIHS Q0J7J7|reviewed|CRS2-ass 166 7.61e-07 RYRHSDCSRQ INLGKGGV THNMIDDIHN Q9FYT6|reviewed|Chloropl 583 8.37e-07 RRIGRKMDGL VLLGRRGI FDGVIEEIHQ Q9LF10|reviewed|Chloropl 591 1.09e-06 RRIGLKMNSS LVLGRRGV FFGVMEGLHQ Q0J7J7|reviewed|CRS2-ass 284 1.86e-06 RNTGLNSSPL MKLTRNGV YVNVVDRVRE Q2R1U8|reviewed|CRM-doma 195 2.20e-06 RHAGMRLKSR IKVGGAGV TREIVERIRD Q84N48|reviewed|CRS2-ass 396 2.40e-06 VRDAFEGSDL VKIDCEGL NPSDYKKIGA Q657G7|reviewed|CRS2-ass 392 2.40e-06 VRDAFEGSDL VKIDCEGL NPSDYKKIGA A7XN92|reviewed|CRM-doma 188 2.83e-06 RHAAIRIKSR TKVGGAGV TREIVEKIKE Q8VYD9|reviewed|CRS2-ass 298 3.07e-06 RKKGLAVPAL TKLAKNGY YGSLVPMVRD Q6Z4U2|reviewed|CRS2-ass 296 3.07e-06 RKKGLYVPVL TKLAKNGY YASLVPMVRD Q9LF10|reviewed|Chloropl 226 3.59e-06 RREASKMRKW VNVRKAGV TELVVNKIKS Q9LT57|reviewed|CRM-doma 219 2.06e-05 SQKLNIKKTE QQLRRMGV NPEDPVAMAS Q9SL79|reviewed|CRS2-ass 405 2.20e-05 VKEAFEVCEL VRIDCQGM KGSDFRKIGA Q84N48|reviewed|CRS2-ass 488 1.12e-04 AIREVLRPKM FKLWKSAV DSSLALLLDD -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LKLGRRGV MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- Q9SL79|reviewed|CRS2-ass 5.8e-07 261_[4]_17_[4]_85_[4]_17_[4]_289 Q84N49|reviewed|CRS2-ass 5.8e-07 203_[4]_17_[4]_85_[4]_345 Q5VMQ5|reviewed|CRS2-ass 1.8e-07 203_[4]_17_[4]_85_[4]_372 Q84N48|reviewed|CRS2-ass 1.9e-08 252_[4]_17_[4]_85_[4]_17_[4]_84_ [4]_116 Q657G7|reviewed|CRS2-ass 1.9e-08 248_[4]_17_[4]_85_[4]_17_[4]_208 Q9LDA9|reviewed|CRS2-ass 6.3e-07 221_[4]_17_[4]_85_[4]_217 Q8VYD9|reviewed|CRS2-ass 3.1e-06 179_[4]_110_[4]_100 Q8L7C2|reviewed|CRM-doma 2.2e-07 184_[4]_405_[4]_406 Q6YYA3|reviewed|Chloropl 2.2e-07 584_[4]_133 Q2R1U8|reviewed|CRM-doma 2.2e-07 194_[4]_408_[4]_268 F4JVH1|reviewed|CRM-doma 2.2e-07 683_[4]_216 F4J2U9|reviewed|CRM-doma 2.2e-07 656_[4]_217 A7XN92|reviewed|CRM-doma 2.8e-06 187_[4]_407_[4]_232 Q6Z4U2|reviewed|CRS2-ass 3.1e-06 177_[4]_110_[4]_125 Q0J7J7|reviewed|CRS2-ass 7.6e-07 165_[4]_110_[4]_75 Q9FYT6|reviewed|Chloropl 8.4e-07 582_[4]_125 Q9LF10|reviewed|Chloropl 3.6e-06 225_[4]_357_[4]_122 Q9LT57|reviewed|CRM-doma 2.1e-05 218_[4]_265 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LKLGRRGV MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF LKLGRRGV width=8 seqs=41 Q9SL79|reviewed|CRS2-ass ( 380) CKLGKNGV 1 Q84N49|reviewed|CRS2-ass ( 322) CKLGKNGV 1 Q5VMQ5|reviewed|CRS2-ass ( 322) CKLGKNGV 1 Q9SL79|reviewed|CRS2-ass ( 287) CKIKCKGV 1 Q84N49|reviewed|CRS2-ass ( 229) CKIKCKGV 1 Q84N48|reviewed|CRS2-ass ( 278) CKVRCRGV 1 Q657G7|reviewed|CRS2-ass ( 274) CKVRCRGV 1 Q5VMQ5|reviewed|CRS2-ass ( 229) CKIKCKGV 1 Q9LDA9|reviewed|CRS2-ass ( 247) CKVRCKGV 1 Q84N48|reviewed|CRS2-ass ( 371) CKLAKNGI 1 Q657G7|reviewed|CRS2-ass ( 367) CKLAKNGI 1 Q9LDA9|reviewed|CRS2-ass ( 340) CKLSKNGV 1 Q84N48|reviewed|CRS2-ass ( 253) LNIGRDGL 1 Q657G7|reviewed|CRS2-ass ( 249) LNIGRDGL 1 Q5VMQ5|reviewed|CRS2-ass ( 204) LNIGRDGL 1 Q8VYD9|reviewed|CRS2-ass ( 180) VNLGRDGL 1 Q8L7C2|reviewed|CRM-doma ( 598) LLLGRRGV 1 Q6YYA3|reviewed|Chloropl ( 585) VLLGRRGV 1 Q2R1U8|reviewed|CRM-doma ( 611) LLLGRRGV 1 F4JVH1|reviewed|CRM-doma ( 684) LLLGRRGV 1 F4J2U9|reviewed|CRM-doma ( 657) LLLGRRGV 1 A7XN92|reviewed|CRM-doma ( 603) LLLGRRGV 1 Q6Z4U2|reviewed|CRS2-ass ( 178) INLGRDGL 1 Q8L7C2|reviewed|CRM-doma ( 185) LKIGKAGI 1 Q9SL79|reviewed|CRS2-ass ( 262) LNMGRDGL 1 Q84N49|reviewed|CRS2-ass ( 204) LNMGRDGL 1 Q9LDA9|reviewed|CRS2-ass ( 222) VNLGRDGF 1 Q0J7J7|reviewed|CRS2-ass ( 166) INLGKGGV 1 Q9FYT6|reviewed|Chloropl ( 583) VLLGRRGI 1 Q9LF10|reviewed|Chloropl ( 591) LVLGRRGV 1 Q0J7J7|reviewed|CRS2-ass ( 284) MKLTRNGV 1 Q2R1U8|reviewed|CRM-doma ( 195) IKVGGAGV 1 Q84N48|reviewed|CRS2-ass ( 396) VKIDCEGL 1 Q657G7|reviewed|CRS2-ass ( 392) VKIDCEGL 1 A7XN92|reviewed|CRM-doma ( 188) TKVGGAGV 1 Q8VYD9|reviewed|CRS2-ass ( 298) TKLAKNGY 1 Q6Z4U2|reviewed|CRS2-ass ( 296) TKLAKNGY 1 Q9LF10|reviewed|Chloropl ( 226) VNVRKAGV 1 Q9LT57|reviewed|CRM-doma ( 219) QQLRRMGV 1 Q9SL79|reviewed|CRS2-ass ( 405) VRIDCQGM 1 Q84N48|reviewed|CRS2-ass ( 488) FKLWKSAV 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LKLGRRGV MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 20 w= 8 n= 12546 bayes= 7.7157 E= 1.9e-040 -276 478 -557 -524 -13 -442 -359 107 -477 152 36 -399 -513 -20 -493 -380 62 159 -336 -270 -462 -475 -584 -472 -618 -533 -328 -501 273 74 -446 263 -614 7 -112 -484 -420 -138 -526 -466 -554 -421 -868 -849 -326 -786 -690 265 -818 251 119 -747 -786 -616 -813 -770 -535 122 -537 -516 14 -326 -20 -410 -466 343 -339 -450 -53 -538 -415 -257 -499 -305 -3 -173 -131 -456 42 -402 -459 443 -592 -481 -626 -37 -334 -509 197 -539 -453 -388 -619 -222 235 -485 -425 -531 -532 -473 56 -311 156 -59 -358 -119 -197 -333 42 -383 10 239 -393 27 138 -114 -211 -342 -391 -281 -139 -335 -387 -492 -504 395 -406 -493 -461 -599 -465 -306 -536 -410 -486 -362 -422 -492 -454 -449 -484 -375 -780 -750 -16 -673 -574 140 -708 123 33 -633 -710 -535 -709 -628 -466 315 -474 106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LKLGRRGV MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 20 w= 8 nsites= 41 E= 1.9e-040 0.000000 0.292683 0.000000 0.000000 0.024390 0.000000 0.000000 0.073171 0.000000 0.292683 0.024390 0.000000 0.000000 0.024390 0.000000 0.000000 0.073171 0.195122 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.512195 0.170732 0.000000 0.243902 0.000000 0.024390 0.024390 0.000000 0.000000 0.024390 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.243902 0.000000 0.560976 0.048780 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.146341 0.000000 0.000000 0.097561 0.000000 0.073171 0.000000 0.000000 0.560976 0.000000 0.000000 0.073171 0.000000 0.000000 0.000000 0.000000 0.000000 0.121951 0.024390 0.024390 0.000000 0.024390 0.000000 0.000000 0.219512 0.000000 0.000000 0.000000 0.048780 0.000000 0.000000 0.292683 0.000000 0.000000 0.000000 0.000000 0.000000 0.439024 0.000000 0.000000 0.000000 0.000000 0.000000 0.097561 0.000000 0.195122 0.048780 0.000000 0.024390 0.000000 0.000000 0.097561 0.000000 0.024390 0.219512 0.000000 0.024390 0.243902 0.024390 0.000000 0.000000 0.000000 0.000000 0.024390 0.000000 0.000000 0.000000 0.000000 0.975610 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.024390 0.000000 0.000000 0.097561 0.000000 0.219512 0.024390 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.585366 0.000000 0.048780 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif LKLGRRGV MEME-4 regular expression -------------------------------------------------------------------------------- [CL][KN][LI]G[RKC][RN]G[VL] -------------------------------------------------------------------------------- Time 35.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- A7XN92|reviewed|CRM-doma 3.37e-21 187_[4(2.83e-06)]_39_[3(3.63e-11)]_\ 6_[1(3.84e-08)]_197_[1(1.05e-08)]_141_[4(2.24e-07)]_6_[2(3.36e-12)]_43_\ [1(7.56e-09)]_167 F4J2U9|reviewed|CRM-doma 3.06e-21 286_[3(3.63e-11)]_6_[1(1.87e-07)]_\ 195_[1(5.69e-09)]_145_[4(2.24e-07)]_6_[2(3.36e-12)]_43_[1(1.05e-08)]_152 F4JVH1|reviewed|CRM-doma 4.01e-22 232_[1(5.58e-05)]_47_[3(3.63e-11)]_\ 199_[1(3.28e-05)]_1_[1(6.52e-08)]_172_[4(2.24e-07)]_6_[2(3.36e-12)]_43_\ [1(5.96e-10)]_151 Q0J7J7|reviewed|CRS2-ass 1.06e-20 165_[4(7.61e-07)]_6_[2(1.40e-10)]_3_\ [4(4.50e-05)]_14_[3(6.55e-10)]_6_[1(2.90e-10)]_49_[4(1.86e-06)]_53_\ [1(1.35e-06)]_14 Q2R1U8|reviewed|CRM-doma 5.60e-21 14_[2(5.75e-05)]_172_[4(2.20e-06)]_\ 39_[3(3.63e-11)]_6_[1(3.69e-07)]_197_[1(1.05e-08)]_142_[4(2.24e-07)]_6_\ [2(3.36e-12)]_43_[1(1.30e-08)]_203 Q5VMQ5|reviewed|CRS2-ass 1.64e-21 203_[4(1.77e-07)]_6_[2(4.69e-11)]_3_\ [4(1.92e-08)]_14_[3(1.55e-09)]_6_[1(7.56e-09)]_49_[4(3.70e-10)]_17_\ [4(5.10e-05)]_28_[1(1.36e-07)]_311 Q657G7|reviewed|CRS2-ass 5.35e-20 248_[4(1.77e-07)]_6_[2(7.19e-10)]_3_\ [4(1.92e-08)]_14_[3(1.41e-09)]_6_[1(7.40e-10)]_49_[4(1.13e-07)]_17_\ [4(2.40e-06)]_28_[1(1.60e-07)]_172 Q67XL4|reviewed|Uncharac 1.24e-14 195_[4(6.94e-05)]_6_[2(1.25e-10)]_\ 40_[1(6.02e-12)]_179 Q6YYA3|reviewed|Chloropl 1.60e-21 221_[3(2.77e-10)]_6_[1(1.08e-07)]_\ 182_[1(6.63e-07)]_1_[1(3.47e-09)]_142_[4(2.24e-07)]_6_[2(8.58e-11)]_43_\ [1(3.25e-11)]_68 Q6Z4U2|reviewed|CRS2-ass 8.30e-20 177_[4(3.08e-07)]_6_[2(4.15e-10)]_3_\ [4(8.34e-05)]_14_[3(3.48e-10)]_6_[1(4.03e-09)]_49_[4(3.07e-06)]_53_\ [1(2.11e-09)]_64 Q84N48|reviewed|CRS2-ass 4.93e-19 252_[4(1.77e-07)]_6_[2(7.19e-10)]_3_\ [4(1.92e-08)]_14_[3(1.41e-09)]_6_[1(7.56e-09)]_49_[4(1.13e-07)]_17_\ [4(2.40e-06)]_28_[1(5.72e-07)]_172 Q84N49|reviewed|CRS2-ass 1.41e-21 203_[4(5.76e-07)]_6_[2(4.69e-11)]_3_\ [4(1.92e-08)]_14_[3(1.55e-09)]_6_[1(7.56e-09)]_49_[4(3.70e-10)]_17_\ [4(5.10e-05)]_28_[1(1.08e-07)]_284 Q8L7C2|reviewed|CRM-doma 2.32e-22 184_[4(4.22e-07)]_6_[2(7.69e-05)]_\ 25_[3(3.63e-11)]_6_[1(1.05e-08)]_205_[1(5.69e-09)]_131_[4(2.24e-07)]_6_\ [2(3.36e-12)]_43_[1(2.17e-10)]_287_[1(1.35e-06)]_46 Q8VYD9|reviewed|CRS2-ass 4.13e-14 179_[4(2.00e-07)]_6_[2(1.05e-08)]_3_\ [4(8.34e-05)]_14_[3(7.58e-05)]_6_[1(8.96e-10)]_49_[4(3.07e-06)]_17_\ [4(9.40e-05)]_28_[1(2.93e-09)]_39 Q9FYT6|reviewed|Chloropl 5.30e-21 236_[3(2.77e-10)]_6_[1(2.34e-07)]_\ 165_[1(1.90e-06)]_1_[1(2.48e-09)]_142_[4(8.37e-07)]_6_[2(8.58e-11)]_43_\ [1(3.25e-11)]_60 Q9LDA9|reviewed|CRS2-ass 1.78e-17 221_[4(6.32e-07)]_6_[2(1.49e-09)]_3_\ [4(5.33e-08)]_14_[3(3.00e-09)]_6_[1(3.84e-08)]_49_[4(1.28e-07)]_17_\ [4(3.06e-05)]_28_[1(1.48e-07)]_156 Q9LF10|reviewed|Chloropl 2.67e-16 225_[4(3.59e-06)]_39_[3(1.49e-08)]_\ 161_[1(5.69e-09)]_141_[4(1.09e-06)]_6_[2(2.32e-09)]_43_[1(1.62e-09)]_57 Q9LT57|reviewed|CRM-doma 2.26e-13 124_[2(6.65e-11)]_40_[1(2.11e-09)]_\ 38_[4(2.06e-05)]_265 Q9SL79|reviewed|CRS2-ass 8.57e-19 261_[4(5.76e-07)]_6_[2(7.49e-09)]_3_\ [4(1.92e-08)]_14_[3(7.22e-09)]_6_[1(7.56e-09)]_49_[4(3.70e-10)]_17_\ [4(2.20e-05)]_28_[1(2.34e-07)]_253 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (4) found. ******************************************************************************** CPU: kodomo ********************************************************************************