[0.000001] Reading roadmap file velv/Roadmaps
[0.038991] 3650 roadmaps read
[0.039083] Creating insertion markers
[0.041625] Ordering insertion markers
[0.050941] Counting preNodes
[0.052585] 5125 preNodes counted, creating them now
[0.078981] Adjusting marker info...
[0.082369] Connecting preNodes
[0.088398] Cleaning up memory
[0.088557] Done creating preGraph
[0.088562] Concatenation...
[0.090527] Renumbering preNodes
[0.090529] Initial preNode count 5125
[0.090652] Destroyed 4462 preNodes
[0.090653] Concatenation over!
[0.090655] Clipping short tips off preGraph
[0.090745] Concatenation...
[0.090953] Renumbering preNodes
[0.090954] Initial preNode count 663
[0.090992] Destroyed 209 preNodes
[0.090994] Concatenation over!
[0.090995] 107 tips cut off
[0.090996] 454 nodes left
[0.091096] Writing into pregraph file velv/PreGraph...
[0.094702] Reading read set file velv/Sequences;
[0.095906] 3650 sequences found
[0.100518] Done
[0.103166] Reading pre-graph file velv/PreGraph
[0.103192] Graph has 454 nodes and 3650 sequences
[0.105344] Scanning pre-graph file velv/PreGraph for k-mers
[0.106764] 18832 kmers found
[0.109581] Sorting kmer occurence table ... 
[0.114927] Sorting done.
[0.114929] Computing acceleration table... 
[0.173987] Computing offsets... 
[0.177654] Ghost Threading through reads 0 / 3650
[0.179405]  === Ghost-Threaded in 0.005138 s
[0.181017] Threading through reads 0 / 3650
[0.192445]  === Threaded in 0.013035 s
[0.199733] Correcting graph with cutoff 0.200000
[0.199925] Determining eligible starting points
[0.200303] Done listing starting nodes
[0.200305] Initializing todo lists
[0.200362] Done with initilization
[0.200364] Activating arc lookup table
[0.200477] Done activating arc lookup table
[0.203963] Concatenation...
[0.203974] Renumbering nodes
[0.203976] Initial node count 454
[0.203987] Removed 267 null nodes
[0.203988] Concatenation over!
[0.203989] Clipping short tips off graph, drastic
[0.204028] Concatenation...
[0.204047] Renumbering nodes
[0.204047] Initial node count 187
[0.204051] Removed 25 null nodes
[0.204052] Concatenation over!
[0.204053] 162 nodes left
[0.204167] Writing into graph file velv/Graph...
[0.207405] WARNING: NO COVERAGE CUTOFF PROVIDED
[0.207407] Velvet will probably leave behind many detectable errors
[0.207408] See manual for instructions on how to set the coverage cutoff parameter
[0.207411] Removing contigs with coverage < -1.000000...
[0.207420] Concatenation...
[0.207426] Renumbering nodes
[0.207427] Initial node count 162
[0.207429] Removed 0 null nodes
[0.207430] Concatenation over!
[0.207435] Concatenation...
[0.207441] Renumbering nodes
[0.207442] Initial node count 162
[0.207443] Removed 0 null nodes
[0.207444] Concatenation over!
[0.207447] Clipping short tips off graph, drastic
[0.207452] Concatenation...
[0.207457] Renumbering nodes
[0.207458] Initial node count 162
[0.207460] Removed 0 null nodes
[0.207461] Concatenation over!
[0.207462] 162 nodes left
[0.207463] WARNING: NO EXPECTED COVERAGE PROVIDED
[0.207464] Velvet will be unable to resolve any repeats
[0.207465] See manual for instructions on how to set the expected coverage parameter
[0.207466] Concatenation...
[0.207472] Renumbering nodes
[0.207473] Initial node count 162
[0.207475] Removed 0 null nodes
[0.207476] Concatenation over!
[0.207477] Removing reference contigs with coverage < -1.000000...
[0.207485] Concatenation...
[0.207491] Renumbering nodes
[0.207492] Initial node count 162
[0.207493] Removed 0 null nodes
[0.207494] Concatenation over!
[0.207551] Writing contigs into velv/contigs.fa...
[0.209920] Writing into stats file velv/stats.txt...
[0.210513] Writing into graph file velv/LastGraph...
Final graph has 162 nodes and n50 of 315, max 1333, total 15408, using 0/3650 reads