TBLASTN 2.2.28+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: X5.fasta
           1,868 sequences; 23,962,143 total letters



Query= EIF3G_SCHPO P78795 Eukaryotic translation initiation factor 3
subunit G {ECO:0000255|HAMAP-Rule:MF_03006} (eIF3g
{ECO:0000255|HAMAP-Rule:MF_03006}) (Eukaryotic translation
initiation factor 3 RNA-binding subunit
{ECO:0000255|HAMAP-Rule:MF_03006}) (eIF-3 RNA-binding subunit
{ECO:0000255|HAMAP-Rule:MF_03006}) (Translation initiation factor
eIF3 p33 subunit homolog {ECO:0000255|HAMAP-Rule:MF_03006}) (eIF3
p33 homolog {ECO:0000255|HAMAP-Rule:MF_03006})

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold-20                                                         95.5    2e-21
  scaffold-444                                                        92.0    2e-20
  scaffold-170                                                        38.9    0.002
  scaffold-17                                                         37.4    0.008


> scaffold-20
Length=45210

 Score = 95.5 bits (236),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 109/287 (38%), Positives = 157/287 (55%), Gaps = 32/287 (11%)
 Frame = -1

Query  20    PSIQTFDNPDGTKTMIEFRIDDNGkkvkvtrvirktvitERVQHAVaerkkwkkfgkeag  79
             P I+  +  DG K ++E+  +D G+K+K+TR ++  V   +  HAV ER+ WKKFG   G
Sbjct  8619  PEIKVTEQ-DGLKVIVEYSTNDKGEKIKITRKVKTVVRK*KANHAVIERR*WKKFG*ATG  8443

Query  80    kNSGVDARTTSVGENVQLRLQLGWTTTkeeeqdeaalaaakvkakGSSVVRCRACKGNHF  139
               +  D   T++GE V L+L  G     E E          VK   +S + CR CKG HF
Sbjct  8442  HGT-FDEGITTLGEEVTLKL--GVRALNEVE*KPKLTVDE*VKKLTTSAITCRVCKGEHF  8272

Query  140   TAQCPYKSIIGPVDEPPLD--ASPVS------SRASGALGEK-----GRYIAPHLRA---  183
             TA+CPYK  + P+ E  LD  ASP +      S A GA G K     G+YI P  RA   
Sbjct  8271  TAKCPYKDTLTPLSET-LDKLASPAAFSSDSVSGADGAAGAKPTLGGGKYIPPSQRAKMG  8095

Query  184   ------GSGRESG--DSMFKRERDDSA---TLRVTNlsddtreeelrdlfrrFGGIQRVY  232
                    +G  SG   S ++    D     TLRV+NLS+  ++ +L  LF +FGGI RV 
Sbjct  8094  IPPSASAAGSTSGRPSSAYQPPGGDGGELTTLRVSNLSEYAQD*DLYSLFSKFGGI*RVK  7915

Query  233   LAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK  279
             +A+D ET   +G+AFV++  R  A  A +++DGY ++NLIL+ E+++
Sbjct  7914  VAQDYETRMCRGYAFVTFNIRRSAELAMEKMDGYPFDNLILKVEWAQ  7774


> scaffold-444
Length=851481

 Score = 92.0 bits (227),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 151/287 (53%), Gaps = 32/287 (11%)
 Frame = -2

Query  20      PSIQTFDNPDGTKTMIEFRIDDNGkkvkvtrvirktvitERVQHAVaerkkwkkfgkeag  79
               P I+  +  DG K ++E+ I+D G+K+K+TR ++  V   +  HAV ER+ WKKFG   G
Sbjct  817421  PEIKVTEQ-DGLKVIVEYSINDKGEKIKITRKVKTVVRK*KANHAVIERR*WKKFG*ATG  817245

Query  80      kNSGVDARTTSVGENVQLRLQLGWTTTkeeeqdeaalaaakvkakGSSVVRCRACKGNHF  139
                 +  D   T++GE V L+L  G     E EQ         VK   +S + CR CKG HF
Sbjct  817244  HGT-FDEGITTLGEEVTLKL--GVRALNEVEQKPKLTVDE*VKKLTTSAITCRVCKGEHF  817074

Query  140     TAQCPYKSIIGPVDEPPLD--ASPV---SSRASGALGEK--------GRYIAPHLRAGSG  186
               TA+CPYK  + P+ E  LD  ASP    S   SGA G          G+YI P  RA  G
Sbjct  817073  TAKCPYKDTLTPLSET-LDKLASPAAFSSDNVSGADGSAAAKPTLGGGKYIPPSQRAKMG  816897

Query  187     RESGDSMFKRERD--------------DSATLRVTNlsddtreeelrdlfrrFGGIQRVY  232
                    S                     +  TLRV+NLS+  ++ +L  LF +FGGI RV 
Sbjct  816896  IPPSASAAGSSSGRSSSAYQPPGGDGGELTTLRVSNLSEYAQD*DLYSLFSKFGGI*RVK  816717

Query  233     LAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK  279
               +A D ET   +G+AFV++  R  A  A +++DGY ++NLIL+ E+++
Sbjct  816716  VA*DYETRMCRGYAFVTFNIRRSAELAMEKMDGYPFDNLILKVEWAQ  816576


> scaffold-170
Length=449377

 Score = 38.9 bits (89),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 34/54 (63%), Gaps = 0/54 (0%)
 Frame = -2

Query  225     FGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFS  278
               FG +  +++  D+ TG AKG+AF+ Y + + A++A  +++     N I+R +F+
Sbjct  220797  FGKV*SIHMNLDRRTGFAKGYAFIEYGEYEEALEAIKKMNNTELYNQIIRVDFA  220636


> scaffold-17
Length=2125590

 Score = 37.4 bits (85),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 21/53 (40%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
 Frame = +2

Query  226      GGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFS  278
                G ++ V +  DK+TGR KG+ FV Y D D A  A   L+G   +   LR  +S
Sbjct  2050544  GPVRSVRILTDKDTGRYKGYGFVEYDDFDTAESAVRNLNGEKLSGRPLRVHYS  2050702



Lambda      K        H        a         alpha
   0.316    0.134    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1444144225


  Database: X5.fasta
    Posted date:  Oct 27, 2018  7:16 PM
  Number of letters in database: 23,962,143
  Number of sequences in database:  1,868



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40