TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: X5.fasta 1,868 sequences; 23,962,143 total letters Query= TBB_NEUCR P05220 Tubulin beta chain (Beta-tubulin) Length=447 Score E Sequences producing significant alignments: (Bits) Value unplaced-665 742 0.0 scaffold-26 693 0.0 unplaced-5 348 1e-105 scaffold-57 348 1e-105 scaffold-423 161 6e-49 > unplaced-665 Length=20473 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/450 (82%), Positives = 398/450 (88%), Gaps = 22/450 (5%) Frame = -2 Query 1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDASGVYNGTSELQLERMN------------ 48 MREIVHL TG CGN IGA FW+ IS EHG+D +G Y G S+LQLER+N Sbjct 7236 MREIVHL*TG*CGN*IGAKFWEVISDEHGIDPNGRYEGDSDLQLERINGEFLNVLFCA** 7057 Query 49 ----------VYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAG 98 VYFNEASG KYVPRAVLVDLEPGTMD+VRAGP+G LFRPDNF+FGQSGAG Sbjct 7056 AFCITLLLIVVYFNEASGGKYVPRAVLVDLEPGTMDSVRAGPYGNLFRPDNFIFGQSGAG 6877 Query 99 NNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSlgggtgagmgtllISKIREE 158 NNWAKGHYTEGAELVD VLDVVR+EAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREE Sbjct 6876 NNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREE 6697 Query 159 FPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLS 218 +PDRMM TFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDIC RTLKL+ Sbjct 6696 YPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLT 6517 Query 219 NPSYGDLNHLVSAVMSGVTVSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGA 278 P+YGDLNHLVSAVMSGVT S+RFPGQLN+DLRKLAVNMVPFPRLHFFMVGFAPLTSRG+ Sbjct 6516 TPTYGDLNHLVSAVMSGVTTSIRFPGQLNADLRKLAVNMVPFPRLHFFMVGFAPLTSRGS 6337 Query 279 HHFRAVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNS 338 +RA+SV ELT QMFD KNMMAASD R+GRYL +AIFRGK+SMKEV++QM +VQ KNS Sbjct 6336 QQYRALSVAELTTQMFDAKNMMAASDPRHGRYLAVAAIFRGKMSMKEVDEQMLSVQTKNS 6157 Query 339 SYFVEWIPNNVQTALCSIPPRGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWY 398 SYFVEWIPNNV+TA+C IPP+GLKMS+TF+GNSTAIQELFKRI +QF+ MF+RKAFLHWY Sbjct 6156 SYFVEWIPNNVKTAVCDIPPKGLKMSATFIGNSTAIQELFKRISDQFSVMFKRKAFLHWY 5977 Query 399 TGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 TGEGMDEMEFTEAESNMNDLVSEYQQYQDA Sbjct 5976 TGEGMDEMEFTEAESNMNDLVSEYQQYQDA 5887 > scaffold-26 Length=483268 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/386 (87%), Positives = 363/386 (94%), Gaps = 0/386 (0%) Frame = -3 Query 43 QLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWA 102 QL + VY+NEASG KYVPRAVLVDLEPGTMD+VRAGP+G LFRPDNF+FGQSGAGNNWA Sbjct 109811 QLYLIVVYYNEASGGKYVPRAVLVDLEPGTMDSVRAGPYGNLFRPDNFIFGQSGAGNNWA 109632 Query 103 KGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSlgggtgagmgtllISKIREEFPDR 162 KGHYTEGAELVD VLDVVR+EAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREE+PDR Sbjct 109631 KGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDR 109452 Query 163 MMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSY 222 MM TFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDIC RTLKL+ P+Y Sbjct 109451 MMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTTPTY 109272 Query 223 GDLNHLVSAVMSGVTVSLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHHFR 282 GDLNHLVSAVMSGVT S+RFPGQLN+DLRKLAVNMVPFPRLHFFMVGFAPLTSRG+ +R Sbjct 109271 GDLNHLVSAVMSGVTTSIRFPGQLNADLRKLAVNMVPFPRLHFFMVGFAPLTSRGSQQYR 109092 Query 283 AVSVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFV 342 A+SV ELT QMFD KNMMAASD R+GRYL +AIFRGK+SMKEV++QM +VQ KNSSYFV Sbjct 109091 ALSVAELTTQMFDAKNMMAASDPRHGRYLAVAAIFRGKMSMKEVDEQMLSVQTKNSSYFV 108912 Query 343 EWIPNNVQTALCSIPPRGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEG 402 EWIPNNV+TA+C IPP+GLKMS+TF+GNSTAIQELFKRI +QF+ MF+RKAFLHWYTGEG Sbjct 108911 EWIPNNVKTAVCDIPPKGLKMSATFIGNSTAIQELFKRISDQFSVMFKRKAFLHWYTGEG 108732 Query 403 MDEMEFTEAESNMNDLVSEYQQYQDA 428 MDEMEFTEAESNMNDLVSEYQQYQDA Sbjct 108731 MDEMEFTEAESNMNDLVSEYQQYQDA 108654 Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/51 (67%), Positives = 39/51 (76%), Gaps = 0/51 (0%) Frame = -2 Query 1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDASGVYNGTSELQLERMNVYF 51 MREIVHL TG CGN IGA FW+ IS EHG+D +G Y G S+LQLER+N F Sbjct 110007 MREIVHL*TG*CGN*IGAKFWEVISDEHGIDPNGRYEGDSDLQLERINGKF 109855 > unplaced-5 Length=12763 Score = 348 bits (892), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 176/441 (40%), Positives = 262/441 (59%), Gaps = 13/441 (3%) Frame = +2 Query 1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDASGVYNGTSELQL--ERMNVYFNEASGNK 58 MRE + + GQ G QIG A W+ EHG+ G + + + N +F+E K Sbjct 3257 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDKSVGVGDDSFNTFFSETGAGK 3436 Query 59 YVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLD 118 +VPR V DLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E++D VL+ Sbjct 3437 HVPRTVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDSVLE 3616 Query 119 VVRREAEGCDCLQGFQITHSlgggtgagmgtllISKIREEFPDRMMATFSVVPSPKVSDT 178 VR+ A+ C L GF + HS GGGTG+G G LL+ ++ ++ + F+V P+P++S Sbjct 3617 RVRKLADNCTGL*GFLVFHSFGGGTGSGFGALLLERLSVDYGKKSKLEFAVYPAPQISTA 3796 Query 179 VVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTV 238 VVEPYN+ L+ H +E+SD F +DNEA+YDIC R L + PSY +LN L++ V+S +T Sbjct 3797 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIGRPSYTNLNRLIAQVVSSITA 3976 Query 239 SLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHHFRAVSVPELTQQMFDPKN 298 SLRF G LN DL + N+VP+PR+HF + +AP+ S + +SV E+TQ F+P N Sbjct 3977 SLRFDGSLNVDLTEFQTNLVPYPRIHFPLATYAPIISAEKAYHEQLSVHEITQACFEPNN 4156 Query 299 MMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP 358 M D RNG+Y+ C ++RG V K+V + ++ K + FV+W P + + PP Sbjct 4157 QMVKCDPRNGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 4336 Query 359 R--------GLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410 + + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+E Sbjct 4337 TVVPGGDVAKVPRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 4516 Query 411 AESNMNDLVSEYQQYQDAGVD 431 A DL + + Y++ G D Sbjct 4517 ARE---DLAALEKDYEEVGTD 4570 > scaffold-57 Length=110052 Score = 348 bits (894), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 177/441 (40%), Positives = 262/441 (59%), Gaps = 13/441 (3%) Frame = -2 Query 1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDASGVYNGTSELQL--ERMNVYFNEASGNK 58 MRE + + GQ G QIG A W+ EHG+ G + + + N +F+E K Sbjct 88586 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDKSVGVGDDSFNTFFSETGAGK 88407 Query 59 YVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLD 118 +VPR V DLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E++D VL+ Sbjct 88406 HVPRTVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDSVLE 88227 Query 119 VVRREAEGCDCLQGFQITHSlgggtgagmgtllISKIREEFPDRMMATFSVVPSPKVSDT 178 VR+ A+ C L GF + HS GGGTG+G G LL+ ++ ++ + F+V P+P+VS Sbjct 88226 RVRKLADNCTGL*GFLVFHSFGGGTGSGFGALLLERLSVDYGKKSKLEFAVYPAPQVSTA 88047 Query 179 VVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTV 238 VVEPYN+ L+ H +E+SD F +DNEA+YDIC R L + PSY +LN L++ V+S +T Sbjct 88046 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIGRPSYTNLNRLIAQVVSSITA 87867 Query 239 SLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHHFRAVSVPELTQQMFDPKN 298 SLRF G LN DL + N+VP+PR+HF + +AP+ S + +SV E+TQ F+P N Sbjct 87866 SLRFDGSLNVDLTEFQTNLVPYPRIHFPLATYAPIISAEKAYHEQLSVHEITQACFEPNN 87687 Query 299 MMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP 358 M D RNG+Y+ C ++RG V K+V + ++ K + FV+W P + + PP Sbjct 87686 QMVKCDPRNGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 87507 Query 359 R--------GLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTE 410 + + + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+E Sbjct 87506 TVVPGGDVAKVPRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 87327 Query 411 AESNMNDLVSEYQQYQDAGVD 431 A DL + + Y++ G D Sbjct 87326 ARE---DLAALEKDYEEVGTD 87273 > scaffold-423 Length=1446679 Score = 161 bits (408), Expect(3) = 6e-49, Method: Compositional matrix adjust. Identities = 112/389 (29%), Positives = 197/389 (51%), Gaps = 41/389 (11%) Frame = +3 Query 80 PFGQLFRPDNFVFG--QSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITH 137 P+G L P+N SGAGNNWA G Y G L + + D++ REA+ + L+GF + H Sbjct 190311 PYGLLHNPENVY*S*DGSGAGNNWASG-Y*SGERLSEDLFDILDREADNSESLEGFNLMH 190487 Query 138 SlgggtgagmgtllISKIREEFPDRMMATFSVVPS--PKVSDTVVEPYNATLSVHQLVEN 195 S+ GGTG+G+G+ L+ + + FP +++ T+SV PS VSD VV+PYN+ LS+ +L EN Sbjct 190488 SIAGGTGSGLGSYLLEMLSDRFPKKLIQTYSVFPSHTEAVSDVVVQPYNSLLSLKRLTEN 190667 Query 196 SDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTVSLRFPGQLNSDLRKLAV 255 +D +DN AL + L + N S+ +N +VS +M+ ++ +RFP + + L Sbjct 190668 ADMVTVLDNAALNRLAQD*LHIKNASFAQINRMVSTIMATSSIQMRFPSYTYNSMIGLMS 190847 Query 256 NMVPFPRLHFFMVGFAPLTSRGAHHFRAVS-------------------------VPELT 290 ++VP + H+ + P T + A+S + ++ Sbjct 190848 SLVPIRKCHYITCAYTPFTHNDLRDYAAISNVNAASENSTNAVNRSR*SLMKKAGLSDIM 191027 Query 291 QQMFDPKN-MMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNV 349 +++ PK+ +++ + YL+ +I +G V K+V + ++ KN+ F W P+++ Sbjct 191028 RRLL*PKSRVISVENTPLNCYLSAMSIVQGDVGAKDVHKAILKLKEKNTMQFAPWKPSSM 191207 Query 350 QTALCSIPPR-------GLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGEG 402 + P G ++S + N T++ +LFK +Q+ + +R AFL Y Sbjct 191208 *INVARRSPCLEDGDT*GGRVSGLMLANHTSVAQLFKSTIDQYDRLRKRNAFLE*YRKLD 191387 Query 403 M--DEM-EFTEAESNMNDLVSEYQQYQDA 428 M D + EF + ++ D+ EY + A Sbjct 191388 MFKDGLEEFDVSRESLLDVTEEYLACEQA 191474 Score = 45.4 bits (106), Expect(3) = 6e-49, Method: Compositional matrix adjust. Identities = 22/80 (28%), Positives = 38/80 (48%), Gaps = 18/80 (23%) Frame = +2 Query 9 TGQCGNQIGAAFWQTISGEHGLDASGVYNGTSE------------------LQLERMNVY 50 TG + +G FW + EHGL G+ +S+ ++R +++ Sbjct 189959 TGMLLSVVGMEFWAQLCAEHGLAPDGLPLTSSD**************SPSIPLMDRKDIF 190138 Query 51 FNEASGNKYVPRAVLVDLEP 70 F +A Y+PR++L+DLEP Sbjct 190139 FYQAEDGHYIPRSILIDLEP 190198 Score = 26.6 bits (57), Expect(3) = 6e-49, Method: Compositional matrix adjust. Identities = 10/13 (77%), Positives = 11/13 (85%), Gaps = 0/13 (0%) Frame = +3 Query 2 REIVHLQTGQCGN 14 REI+ LQ GQCGN Sbjct 189873 REIISLQVGQCGN 189911 Score = 150 bits (380), Expect(3) = 2e-46, Method: Compositional matrix adjust. Identities = 105/384 (27%), Positives = 191/384 (50%), Gaps = 42/384 (11%) Frame = -2 Query 80 PFGQLFRPDNFVFG--QSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITH 137 P+G L P+N SGAGNNWA G Y G L + + D++ REA+ + L+GF + H Sbjct 1101339 PYGLLHNPENVY*S*DGSGAGNNWASG-YQSGGRLSEDLFDILDREADNAESLEGFNLMH 1101163 Query 138 SlgggtgagmgtllISKIREEFPDRMMATFSVVPS--PKVSDTVVEPYNATLSVHQLVEN 195 S+ GGTG+G+G+ L+ + + FP +++ T+SV PS VSD VV+PYN+ LS+ +L EN Sbjct 1101162 SIAGGTGSGLGSYLLEMLSDRFPKKLIQTYSVFPSHTEAVSDVVVQPYNSVLSLKRLTEN 1100983 Query 196 SDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTVSLRFPGQLNSDLRKLAV 255 +D +DN AL + L + N S+ +N +VS +M+ ++ +RFP + + L Sbjct 1100982 ADMVTVLDNAALNRLAQD*LHIKNASFAQINRMVSTIMATSSIQMRFPSYTYNSMIGLMS 1100803 Query 256 NMVPFPRLHFFMVGFAPLTSRGAHHF--------------------------RAVSVPEL 289 ++VP + H+ ++P T + + + ++ Sbjct 1100802 SLVPIRKCHYITCAYSPFTHNDLRDYAASSNVNAAASENSANAVNRSR*SLMKKAGLSDI 1100623 Query 290 TQQMFDPKN-MMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNN 348 +++ K+ +++ + +L+ + G V K+V + ++ KN+ F W P++ Sbjct 1100622 MRRLL*TKSRVISVENTPLNCFLSAMTLV*GDVGAKDVHKAILKLKEKNTMQFAPWKPSS 1100443 Query 349 V-------QTALCSIPPRGLKMSSTFVGNSTAIQELFKRIGEQFTAMFRRKAFLHWYTGE 401 + L P+ ++S + N T++ +LFK +Q+ + +R AFL Y Sbjct 1100442 M*INVARRSPCLEDGDPQSGRVSGLMLANHTSVAQLFKSTIDQYDRLRKRNAFLE*YRKL 1100263 Query 402 GM--DEM-EFTEAESNMNDLVSEY 422 M D + EF + ++ ++ EY Sbjct 1100262 DMFKDGLEEFDVSRESLLEVTEEY 1100191 Score = 47.4 bits (111), Expect(3) = 2e-46, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (56%), Gaps = 8/63 (13%) Frame = -1 Query 16 IGAAFWQTISGEHGLDASGVYNGTSE--------LQLERMNVYFNEASGNKYVPRAVLVD 67 +G FW + EHGL G+ +S+ ++R +++F +A Y+PR++LVD Sbjct 1101622 VGMEFWAQLCAEHGLAPDGLPLTSSD****SSSPPLMDRKDIFFYQAEDGHYIPRSILVD 1101443 Query 68 LEP 70 LEP Sbjct 1101442 LEP 1101434 Score = 26.9 bits (58), Expect(3) = 2e-46, Method: Compositional matrix adjust. Identities = 10/13 (77%), Positives = 11/13 (85%), Gaps = 0/13 (0%) Frame = -3 Query 2 REIVHLQTGQCGN 14 REI+ LQ GQCGN Sbjct 1101728 REIISLQVGQCGN 1101690 Lambda K H a alpha 0.320 0.134 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2698354698 Database: X5.fasta Posted date: Oct 27, 2018 7:16 PM Number of letters in database: 23,962,143 Number of sequences in database: 1,868 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40