SheeP homepage

SheeP
Sheet Puzzle (ver. 2.3)
SheeP displays schemes of β-sheet called draws β-sheet maps
Older version of SheeP is available.

Outline of SheeP algorithm: 1. Protein structure in PDB format is taken as input. 2. Secondary structures are detected. 3. β-sheet maps are created. 4. Maps are modified.

Job done!
Status: maps builded
File name: beta.pdb

Download results: XMAP (XML) Reports Maps Script Everything

Sheet sht_0, map_0 You can mark contacts or flip rows or columns

						237	236
		pro 130 :E	glu 129 :E	phe 128 :E	val 127 :E	ala 126 :E	val 125 :E	glu 124 :E
lys 140 :E	ala 141 :E	thr 142 :E	leu 143 :E	val 144 :E	cys 145 :E	leu 146 :E	ala 147 :E	thr 148 :E
ser 197 :E	val 196 :E	arg 195 :E	leu 194 :E	arg 193 :E	ser 192 :E	ser 191 :E	leu 190 :E	ser 189 :E	tyr 188 :E	arg 187 :E	ser 186 :E
		gly 169 :E	val 170 :E	ser 171 :E	thr 172 :E	asp 173 :E	pro 176 :E	leu 177 :E	lys 178 :E	glu 179 :E	gln 180 :E

Sheet sht_1, map_1 You can mark contacts or flip rows or columns

				126	125
gly 241 :E	trp 240 :E	ala 239 :E	glu 238 :E	ala 237 :E	ser 236 :E	val 235 :E	ile 234 :E	gln 233 :E	thr 232 :E
asn 206 :E	his 207 :E	phe 208 :E	arg 209 :E	cys 210 :E	gln 211 :E	val 212 :E	gln 213 :E	phe 214 :E	tyr 215 :E
	asn 162 :E	val 161 :E	trp 160 :E	trp 159 :E	ser 158 :E	leu 157 :E	glu 156 :E	val 155 :E	his 154 :E

Beta-sheets
sht_id map_ids adjust_alpha_layer_red adjust_alpha_layer_yellow
sht_0 map_0
sht_1 map_1

Contact: evaksianov@gmail.com
Please, cite: Aksianov E., Alexeevski A. SheeP: A Tool for Description of β-Sheets in Protein 3D Structures. J. Bioinform. Comput. Biol. 2012. 10(2).

Work on this service is supported by Russian Foundation of Basic Research, grants 13-07-00969 and 14-04-31709_mol_a.

sht_id	map_ids	adjust_alpha_layer_red	adjust_alpha_layer_yellow
sht_0	map_0
sht_1	map_1

Select contacts of sheet sht_