Operon IdGene Type COGgene PosLeft postRight Strand Function 1 thrL CDS NA 190 255 + NA 2 thrA CDS COG0527 337 2799 + [E] Aspartokinases thrB CDS COG0083 2801 3733 + [E] Homoserine kinase thrC CDS COG0498 3734 5020 + [E] Threonine synthase 3 yaaX CDS ROG2395 5234 5530 + NA 4 yaaA CDS COG3022 5683 6459 - [S] Uncharacterized protein conserved in bacteria yaaJ CDS COG1115 6529 7959 - [E] Na+/alanine symporter 5 talB CDS COG0176 8238 9191 + [G] Transaldolase mog CDS COG0521 9306 9893 + [H] Molybdopterin biosynthesis enzymes 6 satP CDS COG1584 9928 10494 - [S] Predicted membrane protein 7 yaaW CDS COG4735 10643 11356 - [S] Uncharacterized protein conserved in bacteria 8 mbiA CDS NA 10830 11315 + NA 9 yaaI CDS NA 11382 11786 - NA 10 dnaK CDS COG0443 12163 14079 + [O] Molecular chaperone dnaJ CDS COG0484 14168 15298 + [O] DnaJ-class molecular chaperone with C-terminal Zn 11 insL1 CDS COG3385 15445 16557 + [L] FOG: Transposase and inactivated derivatives 12 mokC CDS ROG2120 16751 16960 - NA hokC CDS NA 16751 16903 - NA 13 nhaA CDS COG3004 17489 18655 + [P] Na+/H+ antiporter nhaR CDS COG0583 18715 19620 + [K] Transcriptional regulator 14 insB1 CDS COG1662 19811 20314 - [L] Transposase and inactivated derivatives, IS1 family insA1 CDS COG3677 20233 20508 - [L] Transposase and inactivated derivatives 15 rpsT CDS COG0268 20815 21078 - [J] Ribosomal protein S20 16 yaaY CDS NA 21181 21399 + NA ribF CDS COG0196 21407 22348 + [H] FAD synthase ileS CDS COG0060 22391 25207 + [J] Isoleucyl-tRNA synthetase lspA CDS COG0597 25207 25701 + [MU] Lipoprotein signal peptidase fkpB CDS COG1047 25826 26275 + [O] FKBP-type peptidyl-prolyl cis-trans isomerases 2 ispH CDS COG0761 26277 27227 + [IM] Penicillin tolerance protein 17 rihC CDS COG1957 27293 28207 + [F] Inosine-uridine nucleoside N-ribohydrolase 18 dapB CDS COG0289 28374 29195 + [E] Dihydrodipicolinate reductase 19 carA CDS COG0505 29651 30799 + [EF] Carbamoylphosphate synthase small subunit carB CDS COG0458 30817 34038 + [EF] Carbamoylphosphate synthase large subunit (split gene 20 caiF CDS NA 34300 34695 + NA 21 caiE CDS COG0663 34781 35371 - [R] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily caiD CDS COG1024 35377 36162 - [I] Enoyl-CoA hydratase/carnithine racemase caiC CDS COG0318 36271 37824 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II caiB CDS COG1804 37898 39115 - [C] Predicted acyl-CoA transferases/carnitine dehydratase caiA CDS COG1960 39244 40386 - [I] Acyl-CoA dehydrogenases caiT CDS COG1292 40417 41931 - [M] Choline-glycine betaine transporter 22 fixA CDS COG2086 42403 43173 + [C] Electron transfer flavoprotein, beta subunit fixB CDS COG2025 43188 44129 + [C] Electron transfer flavoprotein, alpha subunit fixC CDS COG0644 44180 45466 + [C] Dehydrogenases (flavoproteins) fixX CDS COG2440 45463 45750 + [C] Ferredoxin-like protein yaaU CDS ROG2472 45807 47138 + NA 23 kefF CDS COG2249 47246 47776 + [R] Putative NADPH-quinone reductase (modulator of drug kefC CDS COG0475 47769 49631 + [P] Kef-type K+ transport systems, membrane components 24 folA CDS COG0262 49823 50302 + [H] Dihydrofolate reductase 25 apaH CDS COG1408 50380 51222 - [R] Predicted phosphohydrolases apaG CDS COG2967 51229 51606 - [P] Uncharacterized protein affecting Mg2+/Co2+ transport rsmA CDS COG0030 51609 52430 - [J] Dimethyladenosine transferase (rRNA methylation) pdxA CDS COG1995 52427 53416 - [H] Pyridoxal phosphate biosynthesis protein surA CDS COG0760 53416 54702 - [O] Parvulin-like peptidyl-prolyl isomerase lptD CDS COG1452 54755 57109 - [M] Organic solvent tolerance protein OstA 26 djlA CDS COG1076 57364 58179 + [O] DnaJ-domain-containing proteins 1 27 yabP CDS NA 58474 59124 + NA yabQ CDS NA 59121 59279 + NA 28 rluA CDS COG0564 59687 60346 - [J] Pseudouridylate synthases, 23S RNA-specific rapA CDS COG0553 60358 63264 - [KL] Superfamily II DNA/RNA helicases, SNF2 family polB CDS COG0417 63429 65780 - [L] DNA polymerase elongation subunit (family B) araD CDS COG0235 65855 66550 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and araA CDS COG2160 66835 68337 - [G] L-arabinose isomerase araB CDS COG1069 68348 70048 - [C] Ribulose kinase 29 araC CDS COG2207 70387 71265 + [K] AraC-type DNA-binding domain-containing proteins yabI CDS COG0586 71351 72115 + [S] Uncharacterized membrane-associated protein 30 thiQ CDS COG3840 72229 72927 - [H] ABC-type thiamine transport system, ATPase component thiP CDS COG1178 72911 74521 - [P] ABC-type Fe3+ transport system, permease component thiB CDS COG4143 74497 75480 - [H] ABC-type thiamine transport system, periplasmic component sgrR CDS COG4533 75644 77299 - [R] ABC-type uncharacterized transport system, periplasmic component 31 sgrT CDS NA 77388 77519 + NA 32 setA CDS NA 77621 78799 + NA 33 leuD CDS COG0066 78848 79453 - [E] 3-isopropylmalate dehydratase small subunit leuC CDS COG0065 79464 80864 - [E] 3-isopropylmalate dehydratase large subunit leuB CDS COG0473 80867 81958 - [CE] Isocitrate/isopropylmalate dehydrogenase leuA CDS COG0119 81958 83529 - [E] Isopropylmalate/homocitrate/citramalate synthases 34 leuL CDS NA 83622 83708 - NA 35 leuO CDS COG0583 84368 85312 + [K] Transcriptional regulator 36 yabR CDS NA 85467 85511 - NA 37 ilvI CDS COG0028 85630 87354 + [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate ilvH CDS COG0440 87357 87848 + [E] Acetolactate synthase, small (regulatory) subunit 38 cra CDS COG1609 88028 89032 + [K] Transcriptional regulators 39 mraZ CDS COG2001 89634 90092 + [S] Uncharacterized protein conserved in bacteria rsmH CDS COG0275 90094 91035 + [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in cell ftsL CDS COG3116 91032 91397 + [D] Cell division protein ftsI CDS COG0768 91413 93179 + [M] Cell division protein FtsI/penicillin-binding protein 2 murE CDS COG0769 93166 94653 + [M] UDP-N-acetylmuramyl tripeptide synthase murF CDS COG0770 94650 96008 + [M] UDP-N-acetylmuramyl pentapeptide synthase mraY CDS COG0472 96002 97084 + [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase murD CDS COG0771 97087 98403 + [M] UDP-N-acetylmuramoylalanine-D-glutamate ligase ftsW CDS COG0772 98403 99647 + [D] Bacterial cell division membrane protein murG CDS COG0707 99644 100711 + [M] UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase murC CDS COG0773 100765 102240 + [M] UDP-N-acetylmuramate-alanine ligase ddlB CDS COG1181 102233 103153 + [M] D-alanine-D-alanine ligase and related ATP-grasp enzymes ftsQ CDS COG1589 103155 103985 + [M] Cell division septal protein ftsA CDS COG0849 103982 105244 + [D] Actin-like ATPase involved in cell division ftsZ CDS COG0206 105305 106456 + [D] Cell division GTPase lpxC CDS COG0774 106557 107474 + [M] UDP-3-O-acyl-N-acetylglucosamine deacetylase 40 secM CDS NA 107705 108217 + NA secA CDS COG0653 108279 110984 + [U] Preprotein translocase subunit SecA (ATPase, RNA mutT CDS COG0494 111044 111433 + [LR] NTP pyrophosphohydrolases including oxidative damage repair 41 yacG CDS COG3024 111649 111846 - [S] Uncharacterized protein conserved in bacteria zapD CDS COG4582 111856 112599 - [S] Uncharacterized protein conserved in bacteria coaE CDS COG0237 112599 113219 - [H] Dephospho-CoA kinase 42 yacM CDS NA 113244 113288 + NA 43 guaC CDS COG0516 113444 114487 + [F] IMP dehydrogenase/GMP reductase 44 hofC CDS COG1459 114522 115724 - [NU] Type II secretory pathway, component PulF hofB CDS COG2804 115714 117099 - [NU] Type II secretory pathway, ATPase PulE/Tfp ppdD CDS COG4969 117109 117549 - [NU] Tfp pilus assembly protein, major pilin 45 nadC CDS COG0157 117752 118645 - [H] Nicotinate-nucleotide pyrophosphorylase 46 ampD CDS COG3023 118733 119284 + [V] Negative regulator of beta-lactamase expression ampE CDS COG3725 119281 120135 + [V] Membrane protein required for beta-lactamase induction 47 aroP CDS COG1113 120178 121551 - [E] Gamma-aminobutyrate permease and related permeases 48 pdhR CDS COG2186 122092 122856 + [K] Transcriptional regulators aceE CDS COG2609 123017 125680 + [C] Pyruvate dehydrogenase complex, dehydrogenase (E1) component aceF CDS COG0508 125695 127587 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) lpd CDS COG1249 127912 129336 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 49 yacH CDS ROG0224 129407 131260 - NA 50 acnB CDS COG1049 131615 134212 + [C] Aconitase B 51 yacL CDS COG3112 134388 134750 + [S] Uncharacterized protein conserved in bacteria 52 speD CDS COG1586 134788 135582 - [E] S-adenosylmethionine decarboxylase speE CDS COG0421 135598 136464 - [E] Spermidine synthase 53 yacC CDS NA 136570 136917 - NA 54 cueO CDS COG2132 137083 138633 + [Q] Putative multicopper oxidases 55 gcd CDS COG4993 138835 141225 - [G] Glucose dehydrogenase 56 hpt CDS COG0634 141431 141967 + [F] Hypoxanthine-guanine phosphoribosyltransferase 57 can CDS COG0288 142008 142670 - [P] Carbonic anhydrase 58 yadG CDS COG1131 142779 143705 + [V] ABC-type multidrug transport system, ATPase component yadH CDS COG0842 143702 144472 + [V] ABC-type multidrug transport system, permease component 59 yadI CDS COG2893 144577 145017 + [G] Phosphotransferase system, mannose/fructose-specific component IIA 60 yadE CDS COG0726 145081 146310 + [G] Predicted xylanase/chitin deacetylase 61 panD CDS COG0853 146314 146694 - [H] Aspartate 1-decarboxylase 62 rpnC CDS COG5464 146968 147870 + [S] Uncharacterized conserved protein 63 panC CDS COG0414 147944 148795 - [H] Panthothenate synthetase panB CDS COG0413 148807 149601 - [H] Ketopantoate hydroxymethyltransferase 64 yadC CDS COG3539 149715 150953 - [NU] P pilus assembly protein, pilin FimA yadK CDS COG3539 151003 151599 - [NU] P pilus assembly protein, pilin FimA yadL CDS COG3539 151626 152231 - [NU] P pilus assembly protein, pilin FimA yadM CDS COG3539 152243 152812 - [NU] P pilus assembly protein, pilin FimA htrE CDS COG3188 152829 155426 - [NU] P pilus assembly protein, porin PapC yadV CDS COG3121 155461 156201 - [NU] P pilus assembly protein, chaperone PapD yadN CDS COG3539 156299 156883 - [NU] P pilus assembly protein, pilin FimA 65 folK CDS COG0801 157253 157732 - [H] 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase pcnB CDS COG0617 157729 159126 - [J] tRNA nucleotidyltransferase/poly(A) polymerase gluQ CDS COG0008 159186 160112 - [J] Glutamyl- and glutaminyl-tRNA synthetases dksA CDS COG1734 160149 160604 - [T] DnaK suppressor protein 66 sfsA CDS COG1489 160782 161486 - [R] DNA-binding protein, stimulates sugar fermentation thpR CDS COG1514 161501 162031 - [J] 2'-5' RNA ligase 67 hrpB CDS COG1643 162105 164534 + [L] HrpA-like helicases 68 mrcB CDS COG0744 164730 167264 + [M] Membrane carboxypeptidase (penicillin-binding protein) 69 mrcB_2 CDS COG0744 164865 167264 + [M] Membrane carboxypeptidase (penicillin-binding protein) 70 fhuA CDS COG1629 167484 169727 + [P] Outer membrane receptor proteins, mostly Fe fhuC CDS COG1120 169778 170575 + [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fhuD CDS COG0614 170575 171465 + [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component fhuB CDS COG0609 171462 173444 + [P] ABC-type Fe3+-siderophore transport system, permease component 71 hemL CDS COG0001 173602 174882 - [H] Glutamate-1-semialdehyde aminotransferase 72 yadX CDS NA 175048 175095 + NA clcA CDS COG0038 175107 176528 + [P] Chloride channel protein EriC yadW CDS NA 176552 176617 + NA erpA CDS COG0316 176610 176954 + [S] Uncharacterized conserved protein 73 yadS CDS COG2860 177001 177624 - [S] Predicted membrane protein btuF CDS COG0614 177662 178462 - [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component mtn CDS COG0775 178455 179153 - [F] Nucleoside phosphorylase 74 dgt CDS COG0232 179237 180754 + [F] dGTP triphosphohydrolase 75 degP CDS COG0265 180884 182308 + [O] Trypsin-like serine proteases, typically periplasmic, contain 76 cdaR CDS COG3835 182463 183620 + [KT] Sugar diacid utilization regulator 77 yaeH CDS ROG5092 183709 184095 - NA 78 yaeI CDS COG1408 184257 185069 - [R] Predicted phosphohydrolases dapD CDS COG2171 185123 185947 - [E] Tetrahydrodipicolinate N-succinyltransferase glnD CDS COG2844 185978 188650 - [O] UTP:GlnB (protein PII) uridylyltransferase map CDS COG0024 188712 189506 - [J] Methionine aminopeptidase 79 rpsB CDS COG0052 189874 190599 + [J] Ribosomal protein S2 tsf CDS COG0264 190857 191708 + [J] Translation elongation factor Ts pyrH CDS COG0528 191855 192580 + [F] Uridylate kinase frr CDS COG0233 192872 193429 + [J] Ribosome recycling factor dxr CDS COG0743 193521 194717 + [I] 1-deoxy-D-xylulose 5-phosphate reductoisomerase ispU CDS COG0020 194903 195664 + [I] Undecaprenyl pyrophosphate synthase cdsA CDS COG0575 195677 196534 + [I] CDP-diglyceride synthetase rseP CDS COG0750 196546 197898 + [M] Predicted membrane-associated Zn-dependent proteases 1 bamA CDS COG4775 197928 200360 + [M] Outer membrane protein/protective antigen OMA87 skp CDS COG2825 200482 200967 + [M] Outer membrane protein lpxD CDS COG1044 200971 201996 + [M] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase fabZ CDS COG0764 202101 202556 + [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases lpxA CDS COG1043 202560 203348 + [M] Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase lpxB CDS COG0763 203348 204496 + [M] Lipid A disaccharide synthetase rnhB CDS COG0164 204493 205089 + [L] Ribonuclease HII dnaE CDS COG0587 205126 208608 + [L] DNA polymerase III, alpha subunit accA CDS COG0825 208621 209580 + [I] Acetyl-CoA carboxylase alpha subunit ldcC CDS COG1982 209679 211820 + [E] Arginine/lysine/ornithine decarboxylases yaeR CDS COG0346 211877 212266 + [E] Lactoylglutathione lyase and related lyases 80 tilS CDS COG0037 212331 213629 + [D] Predicted ATPase of the PP-loop superfamily 81 rof CDS COG4568 213678 213932 - [K] Transcriptional antiterminator yaeP CDS NA 213925 214125 - NA 82 yaeQ CDS COG4681 214291 214836 + [S] Uncharacterized protein conserved in bacteria arfB CDS COG1186 214833 215255 + [J] Protein chain release factor B nlpE CDS COG3015 215269 215979 + [MP] Uncharacterized lipoprotein NlpE involved in copper 83 yaeF CDS COG0791 216179 217003 - [M] Cell wall-associated hydrolases (invasion-associated proteins) 84 proS CDS COG0442 217057 218775 - [J] Prolyl-tRNA synthetase trmO CDS COG1720 218887 219594 - [S] Uncharacterized conserved protein rcsF CDS ROG4703 219591 219995 - NA 85 metQ CDS COG1464 220113 220928 - [P] ABC-type metal ion transport system, periplasmic metI CDS COG2011 220968 221621 - [P] ABC-type metal ion transport system, permease metN CDS COG1135 221614 222645 - [P] ABC-type metal ion transport system, ATPase 86 gmhB CDS COG0241 222833 223408 + [E] Histidinol phosphatase and related phosphatases 87 rrsH rRNA NA 223771 225312 + NA ileV tRNA NA 225381 225457 + NA alaV tRNA NA 225500 225575 + NA rrlH rRNA NA 225759 228662 + NA rrfH rRNA NA 228756 228875 + NA aspU tRNA NA 228928 229004 + NA 88 dkgB CDS COG0656 229167 229970 + [R] Aldo/keto reductases, related to diketogulonate reductase 89 yafC CDS COG0583 229967 230881 - [K] Transcriptional regulator 90 yafD CDS COG3021 231122 231922 + [S] Uncharacterized protein conserved in bacteria yafE CDS COG0500 231926 232549 + [QR] SAM-dependent methyltransferases 91 mltD CDS COG1388 232597 233955 - [M] FOG: LysM repeat 92 gloB CDS COG0491 234027 234782 - [R] Zn-dependent hydrolases, including glyoxylases 93 ykfO CDS NA 234288 234320 + NA 94 yafS CDS COG0500 234816 235538 + [QR] SAM-dependent methyltransferases 95 rnhA CDS COG0328 235535 236002 - [L] Ribonuclease HI 96 dnaQ CDS COG0847 236067 236798 + [L] DNA polymerase III, epsilon subunit and 97 aspV tRNA NA 236931 237007 + NA 98 yafT CDS ROG1186 237335 238120 + NA 99 ykfM CDS NA 238257 238736 - NA 100 yafV CDS COG0388 239419 240189 - [R] Predicted amidohydrolase 101 ivy CDS ROG7878 240343 240816 + NA 102 fadE CDS COG1960 240859 243303 - [I] Acyl-CoA dehydrogenases 103 gmhA CDS COG0279 243543 244121 + [G] Phosphoheptose isomerase 104 yafJ CDS COG0121 244327 245094 + [R] Predicted glutamine amidotransferase 105 dpaA CDS COG3034 245065 245805 - [S] Uncharacterized protein conserved in bacteria 106 yafQ CDS COG3041 245961 246239 - [S] Uncharacterized protein conserved in bacteria dinJ CDS COG3077 246242 246502 - [L] DNA-damage-inducible protein J 107 yafL CDS COG0791 246712 247461 + [M] Cell wall-associated hydrolases (invasion-associated proteins) 108 rayT CDS COG1943 247637 248134 + [L] Transposase and inactivated derivatives 109 dinB CDS COG0389 250898 251953 + [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair yafN CDS COG2161 252005 252298 + [D] Antitoxin of toxin-antitoxin stability system yafO CDS NA 252301 252699 + NA yafP CDS COG0454 252709 253161 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 110 pepD CDS COG2195 254259 255716 - [E] Di- and tripeptidases 111 gpt CDS COG2236 255977 256435 + [R] Predicted phosphoribosyltransferases 112 frsA CDS COG0412 256527 257771 + [Q] Dienelactone hydrolase and related enzymes crl CDS NA 257829 257899 + NA 113 crl_2 CDS NA 258676 259006 + NA 114 insB9 CDS COG1662 257923 258426 - [L] Transposase and inactivated derivatives, IS1 family insA9 CDS COG3677 258345 258620 - [L] Transposase and inactivated derivatives 115 phoE CDS COG3203 259045 260100 - [M] Outer membrane protein (porin) 116 proB CDS COG0263 260388 261491 + [E] Glutamate 5-kinase proA CDS COG0014 261503 262756 + [E] Gamma-glutamyl phosphate reductase 117 thrW tRNA NA 262871 262946 + NA 118 ykfI CDS NA 263328 263669 - NA yafW CDS NA 263690 264007 - NA ykfH CDS NA 264026 264247 - NA ykfG CDS COG2003 264256 264732 - [L] DNA repair proteins yafX CDS ROG6574 264748 265206 - NA 119 ykfF CDS NA 265304 265543 - NA 120 ykfB CDS NA 265620 266087 - NA yafY CDS NA 266110 266553 - NA 121 yafZ CDS ROG1397 267184 268005 - NA 122 ykfA CDS COG3596 268097 268960 - [R] Predicted GTPase 123 perR CDS COG0583 269289 270182 - [K] Transcriptional regulator 124 insN CDS COG2963 270278 270540 + [L] Transposase and inactivated derivatives 125 insN_2 CDS COG2801 271764 272190 + [L] Transposase and inactivated derivatives 126 insI1 CDS COG2826 270603 271754 + [L] Transposase and inactivated derivatives, IS30 family 127 ykfC CDS COG3344 272847 273992 + [L] Retron-type reverse transcriptase 128 insH1 CDS COG3039 274101 275081 - [L] Transposase and inactivated derivatives, IS5 family 129 mmuP CDS COG0833 275325 276728 + [E] Amino acid transporters mmuM CDS COG2040 276715 277647 + [E] Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) 130 afuC CDS COG3842 277756 278802 - [E] ABC-type spermidine/putrescine transport systems, ATPase components 131 insB2 CDS COG1662 279178 279681 - [L] Transposase and inactivated derivatives, IS1 family insA2 CDS COG3677 279600 279875 - [L] Transposase and inactivated derivatives 132 yagB CDS NA 280385 280735 - NA 133 yagA CDS COG2801 280829 281983 - [L] Transposase and inactivated derivatives 134 yagE CDS COG0329 282278 283186 + [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase yagF CDS COG0129 283201 285168 + [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase 135 yagG CDS COG2211 285395 286777 + [G] Na+/melibiose symporter and related transporters yagH CDS COG3507 286789 288399 + [G] Beta-xylosidase 136 xynR CDS COG1414 288404 289162 - [K] Transcriptional regulator 137 argF CDS COG0078 289301 290305 - [E] Ornithine carbamoyltransferase argL CDS NA 290275 290370 - NA 138 ykgS CDS ROG1110 290510 290638 + NA 139 insB3 CDS COG1662 290649 291152 - [L] Transposase and inactivated derivatives, IS1 family insA3 CDS COG3677 291071 291346 - [L] Transposase and inactivated derivatives 140 yagJ CDS ROG8081 291500 292231 + NA 141 yagK CDS ROG3235 292322 292948 - NA 142 yagL CDS COG4584 293220 293918 - [L] Transposase and inactivated derivatives yagM CDS NA 293945 294799 - NA 143 ykgV CDS ROG6460 294918 295142 - NA yagN CDS NA 295139 295579 - NA 144 intF CDS COG0582 295696 297096 - [L] Integrase 145 yagP CDS COG0583 297381 297791 - [K] Transcriptional regulator paoD CDS COG1975 297770 298726 - [O] Xanthine and CO dehydrogenases maturation factor, paoC CDS COG1529 298736 300934 - [C] Aerobic-type carbon monoxide dehydrogenase, large subunit paoB CDS COG1319 300931 301887 - [C] Aerobic-type carbon monoxide dehydrogenase, middle subunit paoA CDS COG2080 301884 302573 - [C] Aerobic-type carbon monoxide dehydrogenase, small subunit 146 yagU CDS COG3477 302991 303605 + [S] Predicted periplasmic/secreted protein 147 ykgJ CDS COG0727 303853 304182 - [R] Predicted Fe-S-cluster oxidoreductase 148 ecpE CDS ROG8001 304495 305205 - NA ecpD CDS NA 305174 306817 - NA ecpC CDS NA 306807 309332 - NA ecpB CDS ROG8001 309358 310026 - NA ecpA CDS NA 310084 310671 - NA 149 matA CDS COG2771 310746 311336 - [K] DNA-binding HTH domain-containing proteins 150 ykgL CDS NA 312112 312339 + NA 151 ykgO CDS COG0257 312374 312514 - [J] Ribosomal protein L36 ykgM CDS COG0254 312514 312777 - [J] Ribosomal protein L31 152 ykgR CDS NA 313141 313242 - NA 153 insE1 CDS COG2963 315291 315590 + [L] Transposase and inactivated derivatives insF1 CDS COG2801 315587 316453 + [L] Transposase and inactivated derivatives 154 rclC CDS COG3059 317726 318319 - [S] Predicted membrane protein rclB CDS NA 318331 318567 - NA 155 rclA CDS COG1249 318676 320001 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 156 rclR CDS COG2207 320227 321081 + [K] AraC-type DNA-binding domain-containing proteins 157 ykgE CDS COG0247 321608 322327 + [C] Fe-S oxidoreductase ykgF CDS COG1139 322338 323765 + [C] Uncharacterized conserved protein containing a ferredoxin-like ykgG CDS COG1556 323758 324453 + [S] Uncharacterized conserved protein 158 ykgH CDS NA 324696 325364 - NA 159 betA CDS COG2303 325577 327247 - [E] Choline dehydrogenase and related flavoproteins betB CDS COG1012 327261 328733 - [C] NAD-dependent aldehyde dehydrogenases betI CDS COG1309 328747 329334 - [K] Transcriptional regulator 160 betT CDS COG1292 329463 331496 + [M] Choline-glycine betaine transporter 161 yahV CDS NA 331802 331876 + NA 162 pdeL CDS COG2200 332371 333459 + [T] FOG: EAL domain 163 yahB CDS COG0583 333501 334433 - [K] Transcriptional regulator 164 yahC CDS ROG2796 334525 335022 - NA 165 yahD CDS COG0666 335280 335885 + [R] FOG: Ankyrin repeat yahE CDS NA 335925 336788 + NA yahF CDS COG0074 336778 338325 + [C] Succinyl-CoA synthetase, alpha subunit yahG CDS ROG1330 338325 339743 + NA yahH CDS ROG5454 339769 340089 + NA 166 yahI CDS COG0549 340165 341115 + [E] Carbamate kinase yahJ CDS NA 341125 342507 + NA 167 yahK CDS COG1064 342884 343933 + [R] Zn-dependent alcohol dehydrogenases 168 yahL CDS NA 344176 344991 + NA 169 yahM CDS NA 345404 345649 + NA 170 yahN CDS COG1280 345666 346337 - [E] Putative threonine efflux protein 171 yahO CDS ROG8156 346484 346759 + NA 172 prpR CDS COG1221 346857 348443 - [KT] Transcriptional regulators containing an AAA-type ATPase 173 prpB CDS COG2513 348682 349572 + [G] PEP phosphonomutase and related enzymes prpC CDS COG0372 350012 351181 + [C] Citrate synthase prpD CDS COG2079 351215 352666 + [R] Uncharacterized protein involved in propionate catabolism prpE CDS COG0365 352706 354592 + [I] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 174 codB CDS COG1457 354922 356181 + [F] Purine-cytosine permease and related proteins codA CDS COG1574 356171 357454 + [R] Predicted metal-dependent hydrolase with the TIM-barrel 175 cynR CDS COG0583 357791 358690 - [K] Transcriptional regulator 176 cynT CDS COG0288 358799 359458 + [P] Carbonic anhydrase cynS CDS COG1513 359489 359959 + [P] Cyanate lyase cynX CDS COG2807 359992 361146 + [P] Cyanate permease 177 lacA CDS COG0110 361249 361860 - [R] Acetyltransferase (isoleucine patch superfamily) lacY CDS COG0477 361926 363179 - [GEPR] Permeases of the major facilitator superfamily lacZ CDS COG3250 363231 366305 - [G] Beta-galactosidase/beta-glucuronidase lacI CDS COG1609 366428 367510 - [K] Transcriptional regulators mhpR CDS COG1414 367587 368420 - [K] Transcriptional regulator 178 mhpA CDS COG0654 368611 370275 + [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases mhpB CDS ROG7549 370277 371221 + NA mhpC CDS COG0596 371239 372105 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase mhpD CDS COG3971 372115 372924 + [Q] 2-keto-4-pentenoate hydratase mhpF CDS COG4569 372921 373871 + [Q] Acetaldehyde dehydrogenase (acetylating) mhpE CDS NA 373868 374881 + NA 179 mhpT CDS COG2814 375459 376670 + [G] Arabinose efflux permease 180 yaiL CDS COG3122 376772 377311 + [S] Uncharacterized protein conserved in bacteria 181 frmB CDS COG0627 377535 378368 - [R] Predicted esterase frmA CDS COG1062 378462 379571 - [C] Zn-dependent alcohol dehydrogenases, class III frmR CDS COG1937 379606 379881 - [S] Uncharacterized protein conserved in bacteria 182 yaiO CDS NA 380069 380842 - NA 183 yaiX CDS COG1208 382591 382872 - [MJ] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation 184 yaiX_2 CDS COG1208 380844 381260 - [MJ] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation 185 insC1 CDS COG2963 381351 381716 + [L] Transposase and inactivated derivatives insD1 CDS COG2801 381674 382579 + [L] Transposase and inactivated derivatives 186 yaiP CDS COG1215 382739 383935 - [M] Glycosyltransferases, probably involved in cell wall 187 ykiC CDS NA 383960 384079 + NA 188 yaiS CDS COG2120 384059 384616 - [S] Uncharacterized proteins, LmbE homologs 189 tauA CDS COG4521 385232 386194 + [P] ABC-type taurine transport system, periplasmic component tauB CDS COG4525 386207 386974 + [P] ABC-type taurine transport system, ATPase component tauC CDS COG0600 386971 387798 + [P] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component tauD CDS COG2175 387795 388646 + [Q] Probable taurine catabolism dioxygenase 190 hemB CDS COG0113 388753 389727 - [H] Delta-aminolevulinic acid dehydratase 191 yaiT CDS NA 390251 391708 + NA 192 yaiT_2 CDS COG3468 392970 394418 + [MU] Type V secretory pathway, adhesin AidA 193 ytiB CDS NA 391592 391648 - NA 194 insF2 CDS COG2801 391739 392605 - [L] Transposase and inactivated derivatives insE2 CDS COG2963 392602 392901 - [L] Transposase and inactivated derivatives 195 iprA CDS NA 394506 395129 + NA 196 ampH CDS COG1680 395130 396287 - [V] Beta-lactamase class C and other penicillin 197 sbmA CDS COG1133 396639 397859 + [I] ABC-type long-chain fatty acid transport system, yaiW CDS ROG1186 397872 398966 + NA 198 yaiY CDS COG3174 399025 399333 - [S] Predicted membrane protein 199 yaiZ CDS ROG0102 399593 399805 + NA 200 ddlA CDS COG1181 399829 400923 - [M] D-alanine-D-alanine ligase and related ATP-grasp enzymes 201 iraP CDS NA 401386 401646 + NA 202 phoA CDS COG1785 401747 403162 + [P] Alkaline phosphatase 203 psiF CDS ROG1291 403281 403601 + NA 204 dgcC CDS COG3706 403703 404818 + [T] Response regulator containing a CheY-like receiver 205 proC CDS COG0345 404835 405644 - [E] Pyrroline-5-carboxylate reductase 206 yaiI CDS COG1671 405764 406222 + [S] Uncharacterized protein conserved in bacteria 207 aroL CDS COG0703 406405 406929 + [E] Shikimate kinase yaiA CDS NA 406979 407170 + NA 208 aroM CDS ROG4371 407428 408105 + NA 209 ppnP CDS COG3123 408177 408461 + [S] Uncharacterized protein conserved in bacteria 210 ykiD CDS NA 408947 409030 + NA 211 rdgC CDS COG2974 409108 410019 - [L] DNA recombination-dependent growth factor C 212 mak CDS COG1940 410144 411052 + [KG] Transcriptional regulator/sugar kinase 213 araJ CDS COG2814 411297 412481 - [G] Arabinose efflux permease 214 sbcC CDS COG0419 412607 415753 - [L] ATPase involved in DNA repair sbcD CDS COG0420 415750 416952 - [L] DNA repair exonuclease 215 phoB CDS COG0745 417142 417831 + [TK] Response regulators consisting of a CheY-like phoR CDS COG0642 417889 419184 + [T] Signal transduction histidine kinase 216 brnQ CDS COG1114 419591 420910 + [E] Branched-chain amino acid permeases proY CDS COG1113 420986 422359 + [E] Gamma-aminobutyrate permease and related permeases 217 malZ CDS COG0366 422518 424332 + [G] Glycosidases 218 acpH CDS COG3124 424337 424918 - [S] Uncharacterized protein conserved in bacteria 219 queA CDS COG0809 425011 426081 + [J] S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) tgt CDS COG0343 426137 427264 + [J] Queuine/archaeosine tRNA-ribosyltransferase yajC CDS COG1862 427287 427619 + [U] Preprotein translocase subunit YajC secD CDS COG0342 427647 429494 + [U] Preprotein translocase subunit SecD secF CDS COG0341 429505 430476 + [U] Preprotein translocase subunit SecF 220 yajD CDS ROG0341 430605 430952 + NA 221 tsx CDS COG3248 431129 432013 - [M] Nucleoside-binding outer membrane protein 222 yajI CDS ROG1922 432312 432851 - NA 223 nrdR CDS COG1327 433002 433451 + [K] Predicted transcriptional regulator, consists of a ribD CDS COG1985 433455 434558 + [H] Pyrimidine reductase, riboflavin biosynthesis ribE CDS COG0054 434647 435117 + [H] Riboflavin synthase beta-chain nusB CDS COG0781 435137 435556 + [K] Transcription termination factor thiL CDS COG0611 435634 436611 + [H] Thiamine monophosphate kinase pgpA CDS COG1267 436589 437107 + [I] Phosphatidylglycerophosphatase A and related proteins 224 yajO CDS COG0667 437161 438135 - [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 225 dxs CDS COG1154 438315 440177 - [HI] Deoxyxylulose-5-phosphate synthase ispA CDS COG0142 440202 441101 - [H] Geranylgeranyl pyrophosphate synthase xseB CDS COG1722 441101 441343 - [L] Exonuclease VII small subunit 226 thiI CDS COG0301 441549 442997 + [H] Thiamine biosynthesis ATP pyrophosphatase 227 yajL CDS COG0693 443051 443641 - [R] Putative intracellular protease/amidase panE CDS COG1893 443604 444515 - [H] Ketopantoate reductase 228 yajQ CDS COG1666 444683 445174 + [S] Uncharacterized protein conserved in bacteria 229 yajR CDS COG0477 445302 446666 - [GEPR] Permeases of the major facilitator superfamily 230 cyoE CDS COG0109 446815 447705 - [O] Polyprenyltransferase (cytochrome oxidase assembly factor) cyoD CDS COG3125 447717 448046 - [C] Heme/copper-type cytochrome/quinol oxidase, subunit 4 cyoC CDS COG1845 448046 448660 - [C] Heme/copper-type cytochrome/quinol oxidase, subunit 3 cyoB CDS COG0843 448650 450641 - [C] Heme/copper-type cytochrome/quinol oxidases, subunit 1 cyoA CDS COG1622 450663 451610 - [C] Heme/copper-type cytochrome/quinol oxidases, subunit 2 231 ampG CDS NA 452070 453545 - NA yajG CDS COG3056 453589 454167 - [M] Uncharacterized lipoprotein 232 bolA CDS COG0271 454472 454789 + [T] Stress-induced morphogen (activity unknown) 233 tig CDS COG0544 455133 456431 + [O] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) clpP CDS COG0740 456677 457300 + [OU] Protease subunit of ATP-dependent Clp proteases clpX CDS COG1219 457426 458700 + [O] ATP-dependent protease Clp, ATPase subunit lon CDS COG0466 458888 461242 + [O] ATP-dependent Lon protease, bacterial type 234 hupB CDS COG0776 461451 461723 + [L] Bacterial nucleoid DNA-binding protein 235 ppiD CDS COG0760 461915 463786 + [O] Parvulin-like peptidyl-prolyl isomerase 236 ybaV CDS COG1555 463937 464308 + [L] DNA uptake protein and related DNA-binding 237 fadM CDS COG0824 464402 464800 + [R] Predicted thioesterase 238 queC CDS COG0603 464852 465547 - [R] Predicted PP-loop superfamily ATPase 239 ybaE CDS COG4533 465612 467312 - [R] ABC-type uncharacterized transport system, periplasmic component 240 cof CDS COG0561 467412 468230 + [R] Predicted hydrolases of the HAD superfamily 241 decR CDS COG1522 468383 468841 + [K] Transcriptional regulators mdlA CDS COG1132 468871 470643 + [V] ABC-type multidrug transport system, ATPase and mdlB CDS COG1132 470636 472417 + [V] ABC-type multidrug transport system, ATPase and 242 glnK CDS COG0347 472598 472936 + [E] Nitrogen regulatory protein PII amtB CDS COG0004 472966 474252 + [P] Ammonia permease 243 tesB CDS COG1946 474301 475161 - [I] Acyl-CoA thioesterase 244 ybaY CDS COG3126 475379 475951 + [S] Uncharacterized protein conserved in bacteria 245 ybaZ CDS COG3695 475982 476371 - [L] Predicted methylated DNA-protein cysteine methyltransferase 246 ybaA CDS COG5507 476672 477025 + [S] Uncharacterized conserved protein 247 pdeB CDS COG4943 477067 478617 - [T] Predicted signal transduction protein containing sensor 248 ylaC CDS NA 478781 479251 - NA 249 maa CDS COG0110 479367 479918 - [R] Acetyltransferase (isoleucine patch superfamily) 250 hha CDS NA 480090 480308 - NA tomB CDS NA 480334 480708 - NA 251 acrB CDS COG0841 481254 484403 - [V] Cation/multidrug efflux pump acrA CDS COG0845 484426 485619 - [M] Membrane-fusion protein 252 acrR CDS COG1309 485761 486408 + [K] Transcriptional regulator 253 mscK CDS COG3264 486536 489898 + [M] Small-conductance mechanosensitive channel 254 ybaM CDS NA 490110 490271 - NA priC CDS COG3923 490285 490812 - [L] Primosomal replication protein N'' 255 ybaN CDS COG2832 490882 491259 + [S] Uncharacterized protein conserved in bacteria 256 apt CDS COG0503 491412 491963 + [F] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins dnaX CDS COG2812 492092 494023 + [L] DNA polymerase III, gamma/tau subunits 257 dnaX_2 CDS COG2812 492092 493375 + [L] DNA polymerase III, gamma/tau subunits dnaX_3 CDS NA 493375 493386 + NA 258 ybaB CDS COG0718 494076 494405 + [S] Uncharacterized protein conserved in bacteria recR CDS COG0353 494405 495010 + [L] Recombinational DNA repair protein (RecF pathway) 259 htpG CDS COG0326 495120 496994 + [O] Molecular chaperone, HSP90 family 260 adk CDS COG0563 497175 497819 + [F] Adenylate kinase and related kinases 261 hemH CDS COG0276 498055 499017 + [H] Protoheme ferro-lyase (ferrochelatase) 262 aes CDS COG0657 499014 499973 - [I] Esterase/lipase 263 gsk CDS COG0524 500125 501429 + [G] Sugar kinases, ribokinase family 264 ybaL CDS COG4651 501562 503238 - [P] Kef-type K+ transport system, predicted NAD-binding 265 fsr CDS NA 503476 504696 - NA 266 ushA CDS COG0737 504914 506566 + [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 267 ybaK CDS COG2606 506603 507082 - [S] Uncharacterized conserved protein 268 ybaP CDS COG3735 507286 508080 - [S] Uncharacterized protein conserved in bacteria 269 ybaQ CDS COG3093 508218 508559 + [R] Plasmid maintenance system antidote protein 270 copA CDS COG2217 508875 511379 - [P] Cation transport ATPase copA_2 CDS COG2608 511176 511379 - [P] Copper chaperone copA_3 CDS NA 511168 511176 - NA 271 glsA CDS COG2066 511641 512573 + [E] Glutaminase ybaT CDS COG0531 512576 513868 + [E] Amino acid transporters cueR CDS COG0789 513993 514400 + [K] Predicted transcriptional regulators 272 ybbJ CDS COG1585 514401 514859 - [OU] Membrane protein implicated in regulation of qmcA CDS COG0330 514856 515773 - [O] Membrane protease subunits, stomatin/prohibitin homologs 273 fetA CDS COG4619 515919 516596 + [R] ABC-type uncharacterized transport system, ATPase component fetB CDS COG0390 516583 517362 + [R] ABC-type uncharacterized transport system, permease component 274 cnoX CDS COG3118 517425 518279 - [O] Thioredoxin domain-containing protein ybbO CDS COG0300 518340 519149 - [R] Short-chain dehydrogenases of various substrate specificities tesA CDS COG2755 519139 519765 - [E] Lysophospholipase L1 and related esterases 275 ybbA CDS COG4181 519733 520419 + [Q] Predicted ABC-type transport system involved in ybbP CDS COG3127 520416 522830 + [Q] Predicted ABC-type transport system involved in 276 rhsD CDS COG3209 523261 527541 + [M] Rhs family protein ybbC CDS NA 527581 527949 + NA 277 ylbG CDS ROG6591 529645 530016 - NA 278 selU CDS COG2603 530132 531226 - [R] Predicted ATPase 279 allS CDS COG0583 531295 532221 - [K] Transcriptional regulator 280 allA CDS COG3194 532451 532933 + [F] Ureidoglycolate hydrolase 281 allR CDS COG1414 533011 533826 + [K] Transcriptional regulator gcl CDS COG3960 533916 535697 + [R] Glyoxylate carboligase hyi CDS COG3622 535710 536486 + [G] Hydroxypyruvate isomerase glxR CDS COG2084 536586 537464 + [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 282 ybbW CDS COG1953 537633 539087 + [FH] Cytosine/uracil/thiamine/allantoin permeases allB CDS COG0044 539147 540508 + [F] Dihydroorotase and related cyclic amidohydrolases ybbY CDS NA 540565 541866 + NA glxK CDS COG1929 541888 543033 + [G] Glycerate kinase 283 allE CDS COG3257 543261 544046 - [R] Uncharacterized protein, possibly involved in glyoxylate allC CDS COG0624 544057 545292 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases allD CDS COG2055 545314 546363 - [C] Malate/L-lactate dehydrogenases 284 fdrA CDS COG0074 546680 548347 + [C] Succinyl-CoA synthetase, alpha subunit ylbE CDS ROG1330 548357 549616 + NA ylbF CDS NA 549627 550442 + NA ybcF CDS COG0549 550439 551332 + [E] Carbamate kinase 285 purK CDS COG0026 551527 552594 - [F] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) purE CDS COG0041 552591 553100 - [F] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 286 lpxH CDS COG2908 553218 553940 - [S] Uncharacterized protein conserved in bacteria ppiB CDS COG0652 553943 554437 - [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin 287 cysS CDS COG0215 554611 555996 + [J] Cysteinyl-tRNA synthetase 288 ybcI CDS COG1988 556032 556553 - [R] Predicted membrane-bound metal-dependent hydrolases 289 ybcJ CDS COG2501 556661 556873 - [S] Uncharacterized conserved protein folD CDS COG0190 556875 557741 - [H] 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 290 sfmA CDS COG3539 558212 558754 + [NU] P pilus assembly protein, pilin FimA sfmC CDS COG3121 558974 559666 + [NU] P pilus assembly protein, chaperone PapD sfmD CDS COG3188 559697 562300 + [NU] P pilus assembly protein, porin PapC sfmH CDS COG3539 562336 563319 + [NU] P pilus assembly protein, pilin FimA sfmF CDS COG3539 563330 563845 + [NU] P pilus assembly protein, pilin FimA 291 fimZ CDS COG2197 563848 564480 - [TK] Response regulator containing a CheY-like receiver 292 argU tRNA NA 564723 564799 + NA 293 intD CDS COG0582 564815 565978 - [L] Integrase 294 renD CDS NA 566684 566776 + NA 295 renD_2 CDS NA 568035 568247 + NA insE3 CDS COG2963 566842 567141 + [L] Transposase and inactivated derivatives insF3 CDS COG2801 567138 568004 + [L] Transposase and inactivated derivatives 296 emrE CDS COG2076 568315 568647 + [P] Membrane transporters of cations and cationic ylcJ CDS NA 568695 568844 + NA ybcK CDS COG1961 568902 570428 + [L] Site-specific recombinases, DNA invertase Pin homologs 297 ybcL CDS COG1881 570893 571444 + [R] Phospholipid-binding protein ybcM CDS COG2207 571454 572251 + [K] AraC-type DNA-binding domain-containing proteins 298 ylcH CDS NA 572368 572469 + NA ybcN CDS NA 572466 572921 + NA ninE CDS NA 572921 573091 + NA ybcO CDS NA 573084 573374 + NA rusA CDS COG4570 573371 573733 + [L] Holliday junction resolvase ylcG CDS NA 573730 573870 + NA 299 quuD CDS NA 573956 574339 + NA 300 nmpC CDS COG3203 575786 576825 - [M] Outer membrane protein (porin) 301 nmpC_2 CDS NA 574529 574586 - NA 302 insH2 CDS COG3039 574737 575717 - [L] Transposase and inactivated derivatives, IS5 family 303 essD CDS NA 577398 577613 + NA rrrD CDS COG3772 577613 578110 + [R] Phage-related lysozyme (muraminidase) rzpD CDS ROG1905 578107 578568 + NA rzoD CDS NA 578327 578509 + NA 304 borD CDS COG3187 578600 578893 - [O] Heat shock protein 305 ybcV CDS COG5562 579184 579594 - [R] Phage envelope protein 306 ybcW CDS NA 579880 580086 + NA 307 ylcI CDS NA 580251 580445 - NA 308 nohD CDS COG4220 580834 581379 + [L] Phage DNA packaging protein, Nu1 subunit tfaD CDS COG5525 581534 582097 + [R] Bacteriophage tail assembly protein 309 tfaX CDS NA 582875 583060 + NA 310 appY CDS COG2207 583681 584430 + [K] AraC-type DNA-binding domain-containing proteins 311 ompT CDS COG4571 584680 585633 - [M] Outer membrane protease 312 envY CDS COG2207 586147 586908 - [K] AraC-type DNA-binding domain-containing proteins 313 ybcH CDS ROG5154 587091 587981 - NA nfrA CDS COG0457 587982 590954 - [R] FOG: TPR repeat nfrB CDS ROG3437 590941 593178 - NA 314 cusS CDS COG0642 593328 594770 - [T] Signal transduction histidine kinase cusR CDS COG0745 594760 595443 - [TK] Response regulators consisting of a CheY-like 315 cusC CDS COG1538 595600 596973 + [MU] Outer membrane protein cusF CDS COG5569 597131 597463 + [S] Uncharacterized conserved protein cusB CDS COG0845 597479 598702 + [M] Membrane-fusion protein cusA CDS COG3696 598714 601857 + [P] Putative silver efflux pump 316 pheP CDS COG1113 601959 603335 + [E] Gamma-aminobutyrate permease and related permeases 317 ybdG CDS COG0668 603416 604663 - [M] Small-conductance mechanosensitive channel 318 nfsB CDS COG0778 604771 605424 - [C] Nitroreductase 319 ybdF CDS COG2315 605518 605886 - [S] Uncharacterized protein conserved in bacteria 320 ybdJ CDS COG5130 605951 606199 - [UT] Prenylated rab acceptor 1 and related 321 ybdK CDS COG2170 606265 607383 - [S] Uncharacterized conserved protein 322 hokE CDS NA 607836 607988 + NA 323 insL2 CDS COG3385 608065 609177 + [L] FOG: Transposase and inactivated derivatives 324 entD CDS COG2977 609459 610079 - [Q] Phosphopantetheinyl transferase component of siderophore synthetase fepA CDS COG4771 610254 612494 - [P] Outer membrane receptor for ferrienterochelin and 325 fes CDS COG2382 612737 613939 + [P] Enterochelin esterase and related enzymes ybdZ CDS COG3251 613942 614160 + [S] Uncharacterized protein conserved in bacteria entF CDS COG1020 614157 618038 + [Q] Non-ribosomal peptide synthetase modules and related 326 fepE CDS COG3765 618254 619387 + [M] Chain length determinant protein 327 fepC CDS COG1120 619384 620199 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fepG CDS COG4779 620196 621188 - [P] ABC-type enterobactin transport system, permease component fepD CDS COG0609 621185 622189 - [P] ABC-type Fe3+-siderophore transport system, permease component 328 entS CDS NA 622300 623550 + NA 329 fepB CDS COG4592 623554 624510 - [P] ABC-type Fe2+-enterobactin transport system, periplasmic component 330 entC CDS COG1169 624885 626060 + [HQ] Isochorismate synthase entE CDS COG1021 626070 627680 + [Q] Peptide arylation enzymes entB CDS COG1535 627694 628551 + [Q] Isochorismate hydrolase entA CDS COG1028 628551 629297 + [IQR] Dehydrogenases with different specificities (related to entH CDS COG2050 629300 629713 + [Q] Uncharacterized protein, possibly involved in aromatic 331 cstA CDS COG1966 629894 631999 + [T] Carbon starvation protein, predicted membrane protein ybdD CDS COG2879 632182 632379 + [S] Uncharacterized small protein 332 hcxA CDS COG0371 632389 633477 - [C] Glycerol dehydrogenase and related enzymes 333 ybdL CDS COG0436 633586 634746 + [E] Aspartate/tyrosine/aromatic aminotransferase 334 ybdM CDS NA 634747 635376 - NA ybdN CDS COG3969 635349 636569 - [R] Predicted phosphoadenosine phosphosulfate sulfotransferase 335 ybdO CDS COG0583 636716 637618 - [K] Transcriptional regulator 336 dsbG CDS COG1651 637827 638573 - [O] Protein-disulfide isomerase 337 ahpC CDS COG0450 638945 639508 + [O] Peroxiredoxin ahpF CDS COG3634 639753 641318 + [O] Alkyl hydroperoxide reductase, large subunit 338 uspG CDS COG0589 641439 641867 - [T] Universal stress protein UspA and related 339 ybdR CDS COG1063 642088 643326 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 340 yldA CDS NA 643330 643419 - NA 341 rnk CDS COG0782 643557 643967 - [K] Transcription elongation factor 342 rna CDS COG3719 644197 645003 - [J] Ribonuclease I 343 citT CDS COG0471 645117 646580 - [P] Di- and tricarboxylate transporters citG CDS COG1767 646631 647509 - [H] Triphosphoribosyl-dephospho-CoA synthetase citX CDS COG3697 647484 648035 - [HI] Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) citF CDS COG3051 648039 649571 - [C] Citrate lyase, alpha subunit citE CDS COG2301 649582 650490 - [G] Citrate lyase beta subunit citD CDS COG3052 650487 650783 - [C] Citrate lyase, gamma subunit citC CDS COG3053 650798 651856 - [C] Citrate lyase synthetase 344 dpiB CDS COG3290 652235 653893 + [T] Signal transduction histidine kinase regulating citrate/malate dpiA CDS COG4565 653862 654542 + [KT] Response regulator of citrate/malate metabolism 345 dcuC CDS COG3069 654583 655968 - [C] C4-dicarboxylate transporter 346 pagP CDS ROG4459 656557 657117 + NA 347 cspE CDS COG1278 657292 657501 + [K] Cold shock proteins 348 crcB CDS COG0239 657555 657938 - [D] Integral membrane protein possibly involved in 349 tatE CDS COG1826 658947 659150 + [U] Sec-independent protein secretion pathway components 350 lipA CDS COG0320 659251 660216 - [H] Lipoate synthase 351 ybeF CDS COG0583 660425 661378 - [K] Transcriptional regulator 352 lipB CDS COG0321 661637 662278 - [H] Lipoate-protein ligase B ybeD CDS COG2921 662379 662642 - [S] Uncharacterized conserved protein dacA CDS COG1686 662752 663963 - [M] D-alanyl-D-alanine carboxypeptidase rlpA CDS COG0797 664102 665190 - [M] Lipoproteins mrdB CDS COG0772 665201 666313 - [D] Bacterial cell division membrane protein mrdA CDS COG0768 666316 668217 - [M] Cell division protein FtsI/penicillin-binding protein 2 rlmH CDS COG1576 668248 668715 - [S] Uncharacterized conserved protein rsfS CDS COG0799 668719 669036 - [S] Uncharacterized homolog of plant Iojap protein 353 cobC CDS COG0406 669296 669907 - [G] Fructose-2,6-bisphosphatase nadD CDS COG1057 669931 670572 - [H] Nicotinic acid mononucleotide adenylyltransferase holA CDS COG1466 670574 671605 - [L] DNA polymerase III, delta subunit lptE CDS COG2980 671605 672186 - [M] Rare lipoprotein B leuS CDS COG0495 672201 674783 - [J] Leucyl-tRNA synthetase 354 ybeL CDS ROG1153 675018 675500 + NA 355 ybeQ CDS COG0790 675570 676547 - [R] FOG: TPR repeat, SEL1 subfamily 356 ybeR CDS ROG2994 676711 677418 + NA djlB CDS NA 677415 678842 + NA 357 ybeT CDS COG0790 678852 679406 - [R] FOG: TPR repeat, SEL1 subfamily 358 ybeU CDS ROG2994 679508 680215 + NA djlC CDS NA 680212 681663 + NA 359 hscC CDS COG0443 681723 683393 - [O] Molecular chaperone 360 rihA CDS COG1957 683477 684412 - [F] Inosine-uridine nucleoside N-ribohydrolase 361 gltL CDS COG1126 684530 685255 - [E] ABC-type polar amino acid transport system, gltK CDS COG0765 685255 685929 - [E] ABC-type amino acid transport system, permease gltJ CDS COG0765 685929 686669 - [E] ABC-type amino acid transport system, permease gltI CDS COG0834 686839 687747 - [ET] ABC-type amino acid transport/signal transduction systems, 362 insH3 CDS COG3039 687997 688977 - [L] Transposase and inactivated derivatives, IS5 family 363 lnt CDS COG0815 689343 690881 - [M] Apolipoprotein N-acyltransferase ybeX CDS COG4535 690906 691784 - [P] Putative Mg2+ and Co2+ transporter CorC ybeY CDS COG0319 691874 692341 - [R] Predicted metal-dependent hydrolase ybeZ CDS COG1702 692338 693378 - [T] Phosphate starvation-inducible protein PhoH, predicted ATPase miaB CDS COG0621 693531 694955 - [J] 2-methylthioadenine synthetase 364 ubiF CDS COG0654 695101 696276 + [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 365 glnX tRNA NA 696430 696504 - NA glnV tRNA NA 696542 696616 - NA metU tRNA NA 696664 696740 - NA glnW tRNA NA 696756 696830 - NA glnU tRNA NA 696865 696939 - NA leuW tRNA NA 696963 697047 - NA metT tRNA NA 697057 697133 - NA 366 asnB CDS COG0367 697513 699177 - [E] Asparagine synthase (glutamine-hydrolyzing) 367 umpH CDS COG0647 699574 700326 - [G] Predicted sugar phosphatases of the HAD nagC CDS COG1940 700374 701594 - [KG] Transcriptional regulator/sugar kinase nagA CDS COG1820 701603 702751 - [G] N-acetylglucosamine-6-phosphate deacetylase nagB CDS COG0363 702811 703611 - [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 368 nagE CDS COG1263 703944 705890 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 369 glnS CDS COG0008 706093 707757 + [J] Glutamyl- and glutaminyl-tRNA synthetases 370 chiP CDS ROG8456 708334 709740 + NA chiQ CDS COG5633 709790 710116 + [R] Predicted periplasmic lipoprotein 371 fur CDS COG0735 710200 710646 - [P] Fe2+/Zn2+ uptake regulation proteins uof CDS NA 710639 710725 - NA 372 fldA CDS COG0716 710935 711465 - [C] Flavodoxins 373 ybfE CDS ROG2075 711605 711898 - NA 374 ybfF CDS COG0596 712038 712802 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 375 seqA CDS COG3057 712987 713532 + [L] Negative regulator of replication initiationR pgm CDS COG0033 713558 715198 + [G] Phosphoglucomutase 376 ybfP CDS NA 715412 715906 + NA 377 potE CDS COG0531 716946 718265 - [E] Amino acid transporters speF CDS COG1982 718262 720460 - [E] Arginine/lysine/ornithine decarboxylases 378 speFL CDS NA 720718 720822 - NA 379 kdpE CDS COG0745 721056 721733 - [TK] Response regulators consisting of a CheY-like kdpD CDS COG2205 721730 724414 - [T] Osmosensitive K+ channel histidine kinase kdpC CDS COG2156 724407 724979 - [P] K+-transporting ATPase, c chain kdpB CDS COG2216 724988 727036 - [P] High-affinity K+ transport system, ATPase chain kdpA CDS COG2060 727059 728732 - [P] K+-transporting ATPase, A chain kdpF CDS NA 728732 728821 - NA 380 ybfA CDS NA 729134 729340 + NA 381 rhsC CDS COG3209 729583 733776 + [M] Rhs family protein ybfB CDS NA 733776 734102 + NA 382 ybfC CDS NA 735650 736219 + NA 383 ybfQ CDS COG5433 736445 736699 + [L] Transposase 384 ybfD CDS COG5433 738092 738853 + [L] Transposase 385 ybgA CDS COG3272 739001 739510 + [S] Uncharacterized conserved protein phr CDS COG0415 739507 740925 + [L] Deoxyribodipyrimidine photolyase 386 dtpD CDS COG3104 741075 742556 - [E] Dipeptide/tripeptide permease 387 ybgI CDS COG0327 742827 743570 + [S] Uncharacterized conserved protein pxpB CDS COG2049 743593 744249 + [E] Allophanate hydrolase subunit 1 pxpC CDS COG1984 744243 745175 + [E] Allophanate hydrolase subunit 2 pxpA CDS COG1540 745165 745899 + [R] Uncharacterized proteins, homologs of lactam utilization nei CDS COG0266 745935 746726 + [L] Formamidopyrimidine-DNA glycosylase 388 abrB CDS COG3180 746723 747769 - [R] Putative ammonia monooxygenase 389 ybgO CDS NA 747921 748982 - NA ybgP CDS COG3121 748979 749707 - [NU] P pilus assembly protein, chaperone PapD ybgQ CDS COG3188 749722 752169 - [NU] P pilus assembly protein, porin PapC ybgD CDS COG3539 752229 752795 - [NU] P pilus assembly protein, pilin FimA 390 gltA CDS COG0372 753185 754468 - [C] Citrate synthase 391 ybgV CDS NA 754658 754690 - NA ybgU CDS NA 754674 754781 - NA 392 sdhC CDS COG2009 755177 755566 + [C] Succinate dehydrogenase/fumarate reductase, cytochrome b subunit sdhD CDS COG2142 755560 755907 + [C] Succinate dehydrogenase, hydrophobic anchor subunit sdhA CDS COG1053 755907 757673 + [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit sdhB CDS COG0479 757689 758405 + [C] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit sucA CDS COG0567 758706 761507 + [C] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, sucB CDS COG0508 761522 762739 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) sucC CDS COG0045 763014 764180 + [C] Succinyl-CoA synthetase, beta subunit sucD CDS COG0074 764180 765049 + [C] Succinyl-CoA synthetase, alpha subunit 393 mngR CDS COG2188 765153 765875 - [K] Transcriptional regulators 394 mngA CDS COG1299 765984 767960 + [G] Phosphotransferase system, fructose-specific IIC component mngB CDS COG0383 767978 770611 + [G] Alpha-mannosidase 395 cydA CDS COG1271 771458 773026 + [C] Cytochrome bd-type quinol oxidase, subunit 1 cydB CDS COG1294 773042 774181 + [C] Cytochrome bd-type quinol oxidase, subunit 2 cydX CDS COG4890 774196 774309 + [S] Predicted outer membrane lipoprotein ybgE CDS COG3790 774309 774602 + [S] Predicted membrane protein 396 ybgC CDS COG0824 774752 775156 + [R] Predicted thioesterase tolQ CDS COG0811 775153 775845 + [U] Biopolymer transport proteins tolR CDS COG0848 775849 776277 + [U] Biopolymer transport protein tolA CDS COG3064 776342 777607 + [M] Membrane protein involved in colicin uptake tolB CDS COG0823 777740 779032 + [U] Periplasmic component of the Tol biopolymer pal CDS COG2885 779067 779588 + [M] Outer membrane protein and related peptidoglycan-associated cpoB CDS COG1729 779598 780389 + [S] Uncharacterized protein conserved in bacteria 397 lysT tRNA NA 780554 780629 + NA valT tRNA NA 780765 780840 + NA lysW tRNA NA 780843 780918 + NA valZ tRNA NA 781068 781143 + NA lysY tRNA NA 781147 781222 + NA lysZ tRNA NA 781369 781444 + NA lysQ tRNA NA 781577 781652 + NA 398 nadA CDS COG0379 782085 783128 + [H] Quinolinate synthase pnuC CDS COG3201 783166 783885 + [H] Nicotinamide mononucleotide transporter 399 zitB CDS COG1230 783882 784823 - [P] Co/Zn/Cd efflux system component 400 ybgS CDS ROG3493 784937 785317 - NA 401 aroG CDS COG0722 785633 786685 + [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 402 gpmA CDS COG0588 786843 787595 - [G] Phosphoglycerate mutase 1 galM CDS COG2017 787797 788837 - [G] Galactose mutarotase and related enzymes galK CDS COG0153 788831 789979 - [G] Galactokinase galT CDS COG1085 789983 791029 - [C] Galactose-1-phosphate uridylyltransferase galE CDS COG1087 791039 792055 - [M] UDP-glucose 4-epimerase 403 modF CDS COG1119 792316 793788 - [P] ABC-type molybdenum transport system, ATPase component/photorepair modE CDS COG2005 793856 794644 - [R] N-terminal domain of molybdenum-binding protein 404 acrZ CDS NA 794773 794922 + NA 405 modA CDS COG0725 795089 795862 + [P] ABC-type molybdate transport system, periplasmic component modB CDS COG4149 795862 796551 + [P] ABC-type molybdate transport system, permease component modC CDS COG4148 796554 797612 + [P] ABC-type molybdate transport system, ATPase component 406 ybhA CDS COG0561 797613 798431 - [R] Predicted hydrolases of the HAD superfamily 407 pgl CDS COG2706 798586 799581 + [G] 3-carboxymuconate cyclase 408 ybhD CDS COG0583 799622 800575 - [K] Transcriptional regulator 409 ybhH CDS COG2828 800759 801811 + [S] Uncharacterized protein conserved in bacteria 410 ybhI CDS COG0471 801887 803320 + [P] Di- and tricarboxylate transporters 411 ybhJ CDS COG1048 803503 805764 + [C] Aconitase A 412 ybhC CDS COG4677 805998 807281 - [G] Pectin methylesterase ybhB CDS COG1881 807433 807909 - [R] Phospholipid-binding protein bioA CDS COG0161 807968 809257 - [H] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 413 bioB CDS COG0502 809344 810384 + [H] Biotin synthase and related enzymes bioF CDS COG0156 810381 811535 + [H] 7-keto-8-aminopelargonate synthetase and related enzymes bioC CDS COG0500 811522 812277 + [QR] SAM-dependent methyltransferases bioD CDS COG0132 812270 812947 + [H] Dethiobiotin synthetase 414 uvrB CDS COG0556 813526 815547 + [L] Helicase subunit of the DNA excision 415 ybhK CDS COG0391 815739 816647 - [S] Uncharacterized conserved protein 416 moaA CDS COG2896 817044 818033 + [H] Molybdenum cofactor biosynthesis enzyme moaB CDS COG0521 818055 818567 + [H] Molybdopterin biosynthesis enzymes moaC CDS COG0315 818570 819055 + [H] Molybdenum cofactor biosynthesis enzyme moaD CDS COG1977 819048 819293 + [H] Molybdopterin converting factor, small subunit moaE CDS COG0314 819295 819747 + [H] Molybdopterin converting factor, large subunit 417 ybhL CDS COG0670 819884 820588 + [R] Integral membrane protein, interacts with FtsH ybhM CDS COG0670 820793 821506 + [R] Integral membrane protein, interacts with FtsH 418 ybhN CDS COG0392 821542 822498 - [S] Predicted integral membrane protein clsB CDS COG1502 822498 823739 - [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes ybhP CDS COG3568 823736 824497 - [R] Metal-dependent hydrolase 419 ybhQ CDS ROG0816 824630 825040 + NA 420 ybhR CDS COG0842 825002 826108 - [V] ABC-type multidrug transport system, permease component ybhS CDS COG0842 826119 827252 - [V] ABC-type multidrug transport system, permease component ybhF CDS COG1131 827245 828981 - [V] ABC-type multidrug transport system, ATPase component ybhG CDS COG1566 828974 829972 - [V] Multidrug resistance efflux pump cecR CDS COG1309 829972 830643 - [K] Transcriptional regulator 421 rhlE CDS COG0513 830872 832236 + [LKJ] Superfamily II DNA and RNA helicases 422 ybiA CDS COG3236 832468 832950 - [S] Uncharacterized protein conserved in bacteria 423 dinG CDS COG1199 833070 835220 + [KL] Rad3-related DNA helicases ybiB CDS COG0547 835248 836210 + [E] Anthranilate phosphoribosyltransferase 424 hcxB CDS COG2055 836351 837436 + [C] Malate/L-lactate dehydrogenases 425 ybiE CDS NA 837503 837562 + NA 426 ybiJ CDS NA 837665 837925 - NA 427 ybiI CDS COG1734 838190 838456 - [T] DnaK suppressor protein 428 ybiX CDS COG3128 838530 839207 - [S] Uncharacterized iron-regulated protein fiu CDS COG4774 839249 841531 - [P] Outer membrane receptor for monomeric catechols 429 mcbA CDS ROG2411 841796 842056 - NA 430 rlmF CDS COG3129 842332 843258 + [R] Predicted SAM-dependent methyltransferase 431 ybiO CDS COG0668 843255 845480 - [M] Small-conductance mechanosensitive channel 432 glnQ CDS COG1126 845741 846463 - [E] ABC-type polar amino acid transport system, glnP CDS COG0765 846460 847119 - [E] ABC-type amino acid transport system, permease glnH CDS COG0834 847258 848004 - [ET] ABC-type amino acid transport/signal transduction systems, 433 dps CDS COG0783 848408 848911 - [P] DNA-binding ferritin-like protein (oxidative damage protectant) 434 rhtA CDS COG5006 849210 850097 - [R] Predicted permease, DMT superfamily 435 yliM CDS NA 850332 850397 + NA ompX CDS COG3637 850450 850965 + [M] Opacity protein and related surface antigens 436 opgE CDS COG2194 851014 852597 - [R] Predicted membrane-associated, metal-dependent hydrolase 437 mntS CDS NA 852869 852997 - NA 438 mntR CDS COG1321 853183 853650 + [K] Mn-dependent transcriptional regulator ybiR CDS COG1055 853647 854765 + [P] Na+/H+ antiporter NhaD and related arsenite 439 ldtB CDS COG1376 854824 855744 - [S] Uncharacterized protein conserved in bacteria 440 ybiT CDS COG0488 855963 857555 + [R] ATPase components of ABC transporters with 441 ybiU CDS NA 857796 859061 - NA 442 ybiV CDS COG0561 859213 860028 - [R] Predicted hydrolases of the HAD superfamily 443 ybiW CDS COG1882 860174 862606 - [C] Pyruvate-formate lyase ybiY CDS COG1180 862612 863511 - [O] Pyruvate-formate lyase-activating enzyme 444 fsaA CDS COG0176 863642 864304 + [G] Transaldolase 445 moeB CDS COG0476 864380 865129 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and moeA CDS COG0303 865129 866364 - [H] Molybdopterin biosynthesis enzyme 446 iaaA CDS COG1446 866568 867533 + [E] Asparaginase gsiA CDS COG1123 867520 869391 + [R] ATPase components of various ABC-type transport gsiB CDS COG0747 869411 870949 + [E] ABC-type dipeptide transport system, periplasmic component gsiC CDS COG0601 870967 871887 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components gsiD CDS COG1173 871890 872801 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 447 pdeI CDS COG2200 872979 875327 + [T] FOG: EAL domain dgcI CDS COG2199 875335 876663 + [T] FOG: GGDEF domain 448 rimO CDS COG0621 876710 878035 - [J] 2-methylthioadenine synthetase 449 bssR CDS NA 878248 878631 + NA 450 yliI CDS COG2133 878742 879857 + [G] Glucose/sorbosone dehydrogenases 451 gstB CDS COG0625 879854 880480 - [O] Glutathione S-transferase 452 dacC CDS COG1686 880727 881929 + [M] D-alanyl-D-alanine carboxypeptidase 453 deoR CDS COG1349 881976 882734 - [KG] Transcriptional regulators of sugar metabolism 454 ybjG CDS COG0671 882792 883388 - [I] Membrane-associated phospholipid phosphatase 455 mdfA CDS COG0477 883673 884905 + [GEPR] Permeases of the major facilitator superfamily 456 ybjH CDS NA 884946 885230 - NA 457 ybjI CDS COG0561 885316 886131 - [R] Predicted hydrolases of the HAD superfamily ybjJ CDS COG2814 886131 887339 - [G] Arabinose efflux permease 458 rcdA CDS COG3226 887423 887959 + [S] Uncharacterized protein conserved in bacteria 459 ybjL CDS COG2985 888134 889819 - [R] Predicted permease 460 ybjM CDS NA 890089 890466 + NA 461 grxA CDS COG0695 890496 890753 - [O] Glutaredoxin and related proteins 462 ybjC CDS NA 890913 891200 + NA nfsA CDS COG0778 891184 891906 + [C] Nitroreductase rimK CDS COG0189 891967 892869 + [HJ] Glutathione synthase/Ribosomal protein S6 modification enzyme 463 ybjN CDS ROG6463 892957 893433 + NA 464 potF CDS COG0687 893784 894896 + [E] Spermidine/putrescine-binding periplasmic protein potG CDS COG3842 894991 896124 + [E] ABC-type spermidine/putrescine transport systems, ATPase components potH CDS COG1176 896134 897087 + [E] ABC-type spermidine/putrescine transport system, permease component potI CDS COG1177 897084 897929 + [E] ABC-type spermidine/putrescine transport system, permease component ybjO CDS NA 897989 898477 + NA rlmC CDS COG2265 898518 899645 + [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 465 artJ CDS COG0834 899844 900575 - [ET] ABC-type amino acid transport/signal transduction systems, 466 artM CDS COG4160 900866 901534 - [E] ABC-type arginine/histidine transport system, permease component artQ CDS COG4215 901534 902250 - [E] ABC-type arginine transport system, permease component artI CDS COG0834 902257 902988 - [ET] ABC-type amino acid transport/signal transduction systems, artP CDS COG4161 903006 903734 - [E] ABC-type arginine transport system, ATPase component 467 ybjP CDS ROG8085 903952 904467 - NA 468 ybjQ CDS COG0393 904593 904916 + [S] Uncharacterized conserved protein amiD CDS COG3023 904913 905743 + [V] Negative regulator of beta-lactamase expression 469 ybjS CDS COG0451 905740 906753 - [MG] Nucleoside-diphosphate-sugar epimerases ybjT CDS COG0702 906852 908282 - [MG] Predicted nucleoside-diphosphate-sugar epimerases ltaE CDS COG2008 908293 909294 - [E] Threonine aldolase poxB CDS COG0028 909331 911049 - [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate 470 hcr CDS COG1018 911182 912150 - [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 hcp CDS COG1151 912162 913814 - [C] 6Fe-6S prismane cluster-containing protein 471 lysO CDS COG2431 913958 914857 - [S] Predicted membrane protein 472 aqpZ CDS COG0580 915352 916047 - [G] Glycerol uptake facilitator and related permeases 473 ybjD CDS COG3593 916473 918131 + [L] Predicted ATP-dependent endonuclease of the OLD 474 ybjX CDS COG2990 918128 919120 - [S] Uncharacterized protein conserved in bacteria 475 macA CDS COG0845 919235 920350 + [M] Membrane-fusion protein macB CDS COG0577 920347 922293 + [V] ABC-type antimicrobial peptide transport system, permease 476 cspD CDS COG1278 922366 922590 - [K] Cold shock proteins 477 yljB CDS NA 922740 922814 + NA 478 clpS CDS COG2127 922913 923233 + [S] Uncharacterized conserved protein clpA CDS COG0542 923264 925540 + [O] ATPases with chaperone activity, ATP-binding subunit 479 serW tRNA NA 925884 925971 - NA 480 infA CDS COG0361 926225 926443 - [J] Translation initiation factor 1 (IF-1) aat CDS COG2360 926728 927432 - [O] Leu/Phe-tRNA-protein transferase cydC CDS COG4987 927474 929195 - [CO] ABC-type transport system involved in cytochrome cydD CDS COG4988 929196 930962 - [CO] ABC-type transport system involved in cytochrome 481 trxB CDS COG0492 931085 932050 - [O] Thioredoxin reductase 482 lrp CDS COG1522 932595 933089 + [K] Transcriptional regulators 483 ftsK CDS COG1674 933224 937213 + [D] DNA segregation ATPase FtsK/SpoIIIE and related lolA CDS COG2834 937372 937983 + [M] Outer membrane lipoprotein-sorting protein rarA CDS COG2256 937994 939337 + [L] ATPase related to the helicase subunit serS CDS COG0172 939428 940720 + [J] Seryl-tRNA synthetase 484 dmsA CDS COG0243 940959 943403 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing dmsB CDS COG0437 943414 944031 + [C] Fe-S-cluster-containing hydrogenase components 1 dmsC CDS COG3302 944033 944896 + [R] DMSO reductase anchor subunit 485 ycaC CDS COG1335 944931 945557 - [Q] Amidases related to nicotinamidase 486 ycaD CDS NA 945871 947019 + NA 487 ycaM CDS COG0531 947229 948659 + [E] Amino acid transporters 488 ycaN CDS COG0583 948660 949568 - [K] Transcriptional regulator 489 ycaK CDS COG2249 949668 950258 + [R] Putative NADPH-quinone reductase (modulator of drug 490 pflA CDS COG1180 950340 951080 - [O] Pyruvate-formate lyase-activating enzyme pflB CDS COG1882 951272 953554 - [C] Pyruvate-formate lyase focA CDS COG2116 953609 954466 - [P] Formate/nitrite family of transporters 491 ycaO CDS COG1944 954872 956632 - [S] Uncharacterized conserved protein 492 ycaP CDS COG2323 956762 957454 + [S] Predicted membrane protein 493 serC CDS COG1932 957653 958741 + [HE] Phosphoserine aminotransferase aroA CDS COG0128 958812 960095 + [E] 5-enolpyruvylshikimate-3-phosphate synthase 494 ycaL CDS COG4784 960264 961028 + [R] Putative Zn-dependent protease 495 cmk CDS COG0283 961201 961884 + [F] Cytidylate kinase rpsA CDS COG0539 961995 963668 + [J] Ribosomal protein S1 ihfB CDS COG0776 963828 964112 + [L] Bacterial nucleoid DNA-binding protein 496 ycaI CDS COG0658 964320 966584 + [R] Predicted membrane metal-binding protein msbA CDS COG1132 966621 968369 + [V] ABC-type multidrug transport system, ATPase and lpxK CDS COG1663 968366 969352 + [M] Tetraacyldisaccharide-1-P 4'-kinase ycaQ CDS COG3214 969389 970621 + [S] Uncharacterized protein conserved in bacteria 497 ycaR CDS COG2835 970673 970855 + [S] Uncharacterized conserved protein kdsB CDS COG1212 970852 971598 + [M] CMP-2-keto-3-deoxyoctulosonic acid synthetase 498 ycbJ CDS NA 971752 972645 + NA 499 elyC CDS COG1434 972622 973401 - [S] Uncharacterized conserved protein 500 cmoM CDS COG0500 973537 974322 + [QR] SAM-dependent methyltransferases mukF CDS COG3006 974319 975641 + [D] Uncharacterized protein involved in chromosome partitioning mukE CDS COG3095 975622 976326 + [D] Uncharacterized protein involved in chromosome partitioning mukB CDS COG3096 976326 980786 + [D] Uncharacterized protein involved in chromosome partitioning 501 ldtD CDS COG2989 981047 982894 + [S] Uncharacterized protein conserved in bacteria mepK CDS COG3108 983075 983623 + [S] Uncharacterized protein conserved in bacteria gloC CDS COG0491 983650 984297 + [R] Zn-dependent hydrolases, including glyoxylases 502 aspC CDS COG1448 984519 985709 - [E] Aspartate/tyrosine/aromatic aminotransferase 503 ompF CDS COG3203 985894 986982 - [M] Outer membrane protein (porin) 504 asnS CDS COG0017 987585 988985 - [J] Aspartyl/asparaginyl-tRNA synthetases 505 pncB CDS COG1488 989154 990356 - [H] Nicotinic acid phosphoribosyltransferase 506 pepN CDS COG0308 990622 993234 + [E] Aminopeptidase N 507 ssuB CDS COG1116 993277 994044 - [P] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component ssuC CDS COG0600 994041 994832 - [P] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component ssuD CDS COG2141 994843 995988 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and ssuA CDS COG0715 995985 996944 - [P] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components ssuE CDS COG0431 996937 997512 - [R] Predicted flavoprotein 508 elfA CDS COG3539 997868 998407 + [NU] P pilus assembly protein, pilin FimA elfD CDS COG3121 998490 999191 + [NU] P pilus assembly protein, chaperone PapD elfC CDS COG3188 999216 1001816 + [NU] P pilus assembly protein, porin PapC elfG CDS COG3539 1001807 1002877 + [NU] P pilus assembly protein, pilin FimA ycbU CDS COG3539 1002889 1003431 + [NU] P pilus assembly protein, pilin FimA ycbV CDS COG3539 1003439 1003954 + [NU] P pilus assembly protein, pilin FimA ycbF CDS COG3121 1003947 1004657 + [NU] P pilus assembly protein, chaperone PapD 509 pyrD CDS COG0167 1004768 1005778 + [F] Dihydroorotate dehydrogenase 510 zapC CDS ROG3478 1005952 1006494 + NA 511 ycbX CDS COG3217 1006491 1007600 - [R] Uncharacterized Fe-S protein 512 rlmL CDS COG0116 1007844 1009952 + [L] Predicted N6-adenine-specific DNA methylase uup CDS COG0488 1009964 1011871 + [R] ATPase components of ABC transporters with 513 pqiA CDS COG2995 1012001 1013254 + [S] Uncharacterized paraquat-inducible protein A pqiB CDS COG3008 1013259 1014899 + [R] Paraquat-inducible protein B pqiC CDS COG3009 1014896 1015459 + [S] Uncharacterized protein conserved in bacteria 514 rmf CDS COG3130 1015715 1015882 + [J] Ribosome modulation factor 515 fabA CDS COG0764 1015952 1016470 - [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases ycbZ CDS COG1067 1016539 1018299 - [O] Predicted ATP-dependent protease 516 matP CDS COG3120 1018485 1018937 + [S] Uncharacterized protein conserved in bacteria 517 ompA CDS COG2885 1019013 1020053 - [M] Outer membrane protein and related peptidoglycan-associated 518 sulA CDS COG5404 1020410 1020919 - [D] SOS-response cell division inhibitor, blocks FtsZ 519 sxy CDS COG3070 1021138 1021767 + [K] Regulator of competence-specific genes 520 yccS CDS COG1289 1021730 1023883 - [S] Predicted membrane protein yccF CDS COG3304 1023902 1024348 - [S] Predicted membrane protein 521 helD CDS COG1074 1024471 1026525 + [L] ATP-dependent exoDNAse (exonuclease V) beta subunit 522 mgsA CDS COG1803 1026557 1027015 - [G] Methylglyoxal synthase yccT CDS COG3110 1027111 1027773 - [S] Uncharacterized protein conserved in bacteria 523 yccU CDS COG1832 1027946 1028359 + [R] Predicted CoA-binding protein 524 hspQ CDS COG3785 1028404 1028721 - [S] Uncharacterized conserved protein rlmI CDS COG1092 1028779 1029969 - [R] Predicted SAM-dependent methyltransferases 525 yccX CDS COG1254 1030064 1030342 + [C] Acylphosphatases 526 tusE CDS COG2920 1030339 1030668 - [P] Dissimilatory sulfite reductase (desulfoviridin), gamma subunit yccA CDS COG0670 1030759 1031418 - [R] Integral membrane protein, interacts with FtsH 527 serT tRNA NA 1031625 1031712 - NA 528 hyaA CDS COG1740 1032139 1033257 + [C] Ni,Fe-hydrogenase I small subunit hyaB CDS COG0374 1033254 1035047 + [C] Ni,Fe-hydrogenase I large subunit hyaC CDS COG1969 1035066 1035773 + [C] Ni,Fe-hydrogenase I cytochrome b subunit hyaD CDS COG0680 1035770 1036357 + [C] Ni,Fe-hydrogenase maturation factor hyaE CDS ROG1104 1036354 1036752 + NA hyaF CDS ROG0413 1036749 1037606 + NA 529 appC CDS COG1271 1037740 1039284 + [C] Cytochrome bd-type quinol oxidase, subunit 1 appB CDS COG1294 1039296 1040432 + [C] Cytochrome bd-type quinol oxidase, subunit 2 appX CDS ROG3054 1040445 1040537 + NA 530 appA CDS ROG1885 1040617 1041915 + NA 531 etk CDS COG3206 1042030 1044210 - [M] Uncharacterized protein involved in exopolysaccharide biosynthesis etp CDS COG0394 1044230 1044676 - [T] Protein-tyrosine-phosphatase gfcE CDS COG1596 1044664 1045803 - [M] Periplasmic protein involved in polysaccharide export gfcD CDS ROG0647 1045849 1047945 - NA gfcC CDS ROG0647 1047945 1048691 - NA gfcB CDS ROG4342 1048688 1049332 - NA 532 gfcA CDS NA 1049439 1049744 - NA 533 insA4 CDS COG3677 1049833 1050108 + [L] Transposase and inactivated derivatives insB4 CDS COG1662 1050027 1050530 + [L] Transposase and inactivated derivatives, IS1 family 534 cspH CDS COG1278 1050963 1051175 - [K] Cold shock proteins 535 cspG CDS COG1278 1051461 1051673 + [K] Cold shock proteins ymcF CDS ROG5189 1051684 1051872 + NA ymcE CDS NA 1051847 1052077 + NA gnsA CDS NA 1052067 1052240 + NA 536 yccM CDS COG0348 1052289 1053362 - [C] Polyferredoxin torS CDS COG0642 1053434 1056178 - [T] Signal transduction histidine kinase 537 torT CDS COG1879 1056261 1057289 + [G] ABC-type sugar transport system, periplasmic component 538 torR CDS COG0745 1057262 1057954 - [TK] Response regulators consisting of a CheY-like 539 torC CDS COG3005 1058084 1059256 + [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c torA CDS COG0243 1059256 1061802 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing torD CDS COG3381 1061799 1062398 + [R] Uncharacterized component of anaerobic dehydrogenases 540 cbpM CDS ROG0188 1062550 1062855 - NA cbpA CDS COG2214 1062855 1063775 - [O] DnaJ-class molecular chaperone 541 yccE CDS NA 1064036 1065292 + NA 542 agp CDS ROG1885 1065585 1066826 + NA 543 yccJ CDS NA 1066864 1067091 - NA wrbA CDS COG0655 1067112 1067708 - [R] Multimeric flavodoxin WrbA 544 ymdF CDS COG3729 1068081 1068254 + [R] General stress protein 545 rutG CDS COG2233 1068511 1069839 - [F] Xanthine/uracil permeases rutF CDS COG1853 1069860 1070354 - [R] Conserved protein/domain typically associated with flavoprotein rutE CDS COG0778 1070365 1070955 - [C] Nitroreductase rutD CDS COG0596 1070965 1071765 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase rutC CDS COG0251 1071773 1072159 - [J] Putative translation initiation inhibitor, yjgF family rutB CDS COG1335 1072171 1072863 - [Q] Amidases related to nicotinamidase rutA CDS COG2141 1072863 1074011 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 546 rutR CDS COG1309 1074242 1074880 + [K] Transcriptional regulator 547 putA CDS COG4230 1074920 1078882 - [C] Delta 1-pyrroline-5-carboxylate dehydrogenase 548 ymdG CDS NA 1079120 1079146 + NA 549 putP CDS COG0591 1079305 1080813 + [ER] Na+/proline symporter 550 efeO CDS COG2822 1082243 1083370 + [P] Predicted periplasmic lipoprotein involved in iron efeB CDS COG2837 1083376 1084647 + [P] Predicted iron-dependent peroxidase 551 phoH CDS COG1702 1084992 1086056 + [T] Phosphate starvation-inducible protein PhoH, predicted ATPase 552 pgaD CDS ROG5746 1086106 1086519 - NA pgaC CDS COG1215 1086521 1087846 - [M] Glycosyltransferases, probably involved in cell wall pgaB CDS COG0726 1087839 1089857 - [G] Predicted xylanase/chitin deacetylase pgaA CDS ROG6308 1089866 1092289 - NA 553 dgcT CDS COG3706 1092876 1094234 + [T] Response regulator containing a CheY-like receiver 554 insF4 CDS COG2801 1094275 1095141 - [L] Transposase and inactivated derivatives insE4 CDS COG2963 1095138 1095437 - [L] Transposase and inactivated derivatives 555 ycdU CDS NA 1095843 1096829 + NA 556 serX tRNA NA 1097565 1097652 - NA 557 ghrA CDS COG0111 1097886 1098824 + [HE] Phosphoglycerate dehydrogenase and related dehydrogenases ycdX CDS COG1387 1098879 1099616 + [ER] Histidinol phosphatase and related hydrolases of ycdY CDS COG3381 1099640 1100194 + [R] Uncharacterized component of anaerobic dehydrogenases 558 ycdZ CDS ROG2796 1100296 1100787 + NA 559 csgG CDS COG1462 1100851 1101684 - [M] Uncharacterized protein involved in formation of csgF CDS ROG3787 1101711 1102127 - NA csgE CDS NA 1102152 1102541 - NA csgD CDS COG2197 1102546 1103196 - [TK] Response regulator containing a CheY-like receiver 560 csgB CDS ROG1255 1103951 1104406 + NA csgA CDS ROG1255 1104447 1104902 + NA csgC CDS NA 1104961 1105293 + NA 561 ymdA CDS COG3539 1105414 1105725 + [NU] P pilus assembly protein, pilin FimA 562 ymdB CDS COG2110 1105820 1106353 + [R] Predicted phosphatase homologous to the C-terminal clsC CDS COG1502 1106355 1107776 + [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes 563 opgC CDS ROG0348 1107784 1108941 - NA 564 opgG CDS COG3131 1109335 1110870 + [P] Periplasmic glucans biosynthesis protein opgH CDS COG2943 1110863 1113406 + [M] Membrane glycosyltransferase 565 yceK CDS COG5645 1113579 1113806 + [R] Predicted periplasmic lipoprotein 566 msyB CDS NA 1113807 1114181 - NA 567 mdtG CDS ROG2472 1114264 1115490 - NA 568 lpxL CDS COG1560 1115662 1116582 - [M] Lauroyl/myristoyl acyltransferase 569 trhO CDS COG1054 1116807 1117859 + [R] Predicted sulfurtransferase 570 yceI CDS COG2353 1117901 1118476 - [S] Uncharacterized conserved protein yceJ CDS COG3038 1118480 1119046 - [C] Cytochrome B561 571 yceO CDS NA 1119307 1119447 - NA solA CDS COG0665 1119468 1120586 - [E] Glycine/D-amino acid oxidases (deaminating) 572 bssS CDS NA 1120701 1120955 - NA 573 dinI CDS NA 1121242 1121487 - NA 574 pyrC CDS COG0418 1121561 1122607 - [F] Dihydroorotase 575 yceB CDS ROG2451 1122713 1123273 - NA 576 grxB CDS COG2999 1123407 1124054 - [O] Glutaredoxin 2 577 mdtH CDS NA 1124118 1125326 - NA 578 rimJ CDS COG1670 1125562 1126146 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins yceH CDS COG3132 1126157 1126804 + [S] Uncharacterized protein conserved in bacteria yceM CDS COG0673 1126806 1127729 + [R] Predicted dehydrogenases and related proteins 579 murJ CDS COG0728 1127839 1129374 + [R] Uncharacterized membrane protein, putative virulence factor 580 flgN CDS COG3418 1129414 1129830 - [NUO] Flagellar biosynthesis/type III secretory pathway chaperone flgM CDS COG2747 1129835 1130128 - [KNU] Negative regulator of flagellin synthesis (anti-sigma28 flgA CDS COG1261 1130204 1130863 - [NO] Flagellar basal body P-ring biosynthesis protein 581 flgB CDS COG1815 1131018 1131434 + [N] Flagellar basal body protein flgC CDS COG1558 1131438 1131842 + [N] Flagellar basal body rod protein flgD CDS COG1843 1131854 1132549 + [N] Flagellar hook capping protein flgE CDS COG1749 1132574 1133782 + [N] Flagellar hook protein FlgE flgF CDS COG4787 1133802 1134557 + [N] Flagellar basal body rod protein flgG CDS COG4786 1134729 1135511 + [N] Flagellar basal body rod protein flgH CDS COG2063 1135564 1136262 + [N] Flagellar basal body L-ring protein flgI CDS COG1706 1136274 1137371 + [N] Flagellar basal-body P-ring protein flgJ CDS COG3951 1137371 1138312 + [MNO] Rod binding protein flgK CDS COG1256 1138378 1140021 + [N] Flagellar hook-associated protein flgL CDS ROG2554 1140033 1140986 + NA 582 rne CDS COG1530 1141182 1144367 - [J] Ribonucleases G and E 583 yceQ CDS NA 1144502 1144822 + NA 584 rluC CDS COG0564 1144940 1145899 + [J] Pseudouridylate synthases, 23S RNA-specific 585 yceF CDS COG0424 1146011 1146595 - [D] Nucleotide-binding protein implicated in inhibition of 586 yceD CDS COG1399 1146794 1147315 + [R] Predicted metal-binding, possibly nucleic acid-binding protein rpmF CDS COG0333 1147367 1147540 + [J] Ribosomal protein L32 plsX CDS COG0416 1147621 1148691 + [I] Fatty acid/phospholipid biosynthesis enzyme fabH CDS COG0332 1148759 1149712 + [I] 3-oxoacyl-[acyl-carrier-protein] synthase III fabD CDS COG0331 1149728 1150657 + [I] (acyl-carrier-protein) S-malonyltransferase fabG CDS COG1028 1150670 1151404 + [IQR] Dehydrogenases with different specificities (related to acpP CDS COG0236 1151615 1151851 + [IQ] Acyl carrier protein fabF CDS COG0304 1151939 1153180 + [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase pabC CDS COG0115 1153300 1154109 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase mltG CDS COG1559 1154112 1155134 + [R] Predicted periplasmic solute-binding protein tmk CDS COG0125 1155124 1155765 + [F] Thymidylate kinase holB CDS COG2812 1155762 1156766 + [L] DNA polymerase III, gamma/tau subunits ycfH CDS COG0084 1156777 1157574 + [L] Mg-dependent DNase 587 ptsG CDS COG1263 1157869 1159302 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 588 fhuE CDS COG4773 1159362 1161551 - [P] Outer membrane receptor for ferric coprogen 589 hinT CDS COG0537 1161885 1162244 + [FGR] Diadenosine tetraphosphate (Ap4A) hydrolase and other ycfL CDS COG5633 1162247 1162624 + [R] Predicted periplasmic lipoprotein lpoB CDS COG3417 1162638 1163279 + [R] Collagen-binding surface adhesin SpaP (antigen I/II thiK CDS COG0510 1163260 1164084 + [M] Predicted choline kinase involved in LPS nagZ CDS COG1472 1164095 1165120 + [G] Beta-glucosidase-related glycosidases ycfP CDS COG3150 1165143 1165685 + [R] Predicted esterase 590 ndh CDS COG1252 1166085 1167389 + [C] NADH dehydrogenase, FAD-containing subunit 591 ycfJ CDS COG3134 1167599 1168138 + [S] Predicted outer membrane lipoprotein 592 comR CDS COG1309 1168200 1168832 - [K] Transcriptional regulator 593 bhsA CDS NA 1169073 1169330 + NA 594 ldtC CDS COG1376 1169412 1170374 - [S] Uncharacterized protein conserved in bacteria 595 mfd CDS COG1197 1170518 1173964 - [LK] Transcription-repair coupling factor (superfamily II helicase) 596 ycfT CDS COG4763 1174092 1175165 - [S] Predicted membrane protein 597 lolC CDS COG4591 1175427 1176626 + [M] ABC-type transport system, involved in lipoprotein lolD CDS COG1136 1176619 1177320 + [V] ABC-type antimicrobial peptide transport system, ATPase lolE CDS COG4591 1177320 1178564 + [M] ABC-type transport system, involved in lipoprotein nagK CDS COG1940 1178593 1179504 + [KG] Transcriptional regulator/sugar kinase cobB CDS COG0846 1179520 1180359 + [K] NAD-dependent protein deacetylases, SIR2 family cobB_2 CDS COG0846 1179631 1180359 + [K] NAD-dependent protein deacetylases, SIR2 family 598 ycfZ CDS NA 1180479 1181267 - NA ymfA CDS ROG4598 1181264 1181725 - NA potD CDS COG0687 1181783 1182829 - [E] Spermidine/putrescine-binding periplasmic protein potC CDS COG1177 1182826 1183620 - [E] ABC-type spermidine/putrescine transport system, permease component potB CDS COG1176 1183617 1184444 - [E] ABC-type spermidine/putrescine transport system, permease component potA CDS COG3842 1184458 1185594 - [E] ABC-type spermidine/putrescine transport systems, ATPase components 599 pepT CDS COG2195 1185844 1187070 + [E] Di- and tripeptidases 600 roxA CDS COG2850 1187119 1188240 - [S] Uncharacterized conserved protein 601 phoQ CDS COG2205 1188316 1189776 - [T] Osmosensitive K+ channel histidine kinase phoP CDS COG0745 1189776 1190447 - [TK] Response regulators consisting of a CheY-like 602 purB CDS COG0015 1190616 1191986 - [F] Adenylosuccinate lyase hflD CDS COG2915 1191990 1192631 - [R] Uncharacterized protein involved in purine metabolism mnmA CDS COG0482 1192667 1193773 - [J] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop nudJ CDS COG1051 1193827 1194288 - [F] ADP-ribose pyrophosphatase rluE CDS COG1187 1194298 1194951 - [J] 16S rRNA uridine-516 pseudouridylate synthase and 603 icd CDS COG0538 1195123 1196373 + [C] Isocitrate dehydrogenases 604 ymfD CDS NA 1196867 1197532 - NA ymfE CDS ROG6902 1197533 1198237 - NA 605 lit CDS NA 1198695 1199588 + NA 606 intE CDS NA 1199679 1200806 - NA xisE CDS NA 1200787 1201032 - NA ymfH CDS NA 1201069 1201380 - NA 607 ymfI CDS NA 1201497 1201838 + NA 608 ymfJ CDS NA 1201776 1202084 - NA 609 ymfK CDS COG2932 1202259 1202933 - [K] Predicted transcriptional regulator 610 ymfT CDS NA 1203024 1203224 + NA ymfL CDS NA 1203268 1203825 + NA ymfM CDS NA 1203822 1204160 + NA ymfN CDS COG4626 1204170 1205537 + [R] Phage terminase-like protein, large subunit ymfR CDS NA 1205549 1205731 + NA beeE CDS COG4695 1205731 1206204 + [S] Phage-related protein 611 ymfQ CDS COG3778 1206913 1207497 + [S] Uncharacterized protein conserved in bacteria ycfK CDS NA 1207501 1208130 + NA tfaP CDS NA 1208132 1208545 + NA 612 tfaE CDS NA 1208517 1209119 - NA 613 pinE CDS COG1961 1209685 1210239 + [L] Site-specific recombinases, DNA invertase Pin homologs 614 mcrA CDS COG1403 1210346 1211179 + [V] Restriction endonuclease 615 iraM CDS NA 1211680 1212003 - NA 616 ymgK CDS NA 1212260 1212304 - NA 617 ymgL CDS NA 1212540 1212650 - NA ycgX CDS COG5562 1212703 1213107 - [R] Phage envelope protein 618 bluR CDS COG0789 1213328 1214059 - [K] Predicted transcriptional regulators 619 bluF CDS ROG0024 1214264 1215475 - NA 620 ycgZ CDS NA 1215789 1216025 + NA ymgA CDS NA 1216068 1216340 + NA ariR CDS NA 1216369 1216635 + NA 621 ymgC CDS ROG8327 1216748 1216996 + NA 622 pdeG CDS COG2200 1217328 1218851 + [T] FOG: EAL domain 623 ymgF CDS ROG7340 1218983 1219201 + NA 624 ymgD CDS NA 1222305 1222634 - NA ymgG CDS ROG6708 1222644 1222988 - NA ymgI CDS NA 1222990 1223163 - NA 625 ymgJ CDS NA 1223264 1223449 + NA 626 minE CDS COG0851 1224279 1224545 - [D] Septum formation topological specificity factor minD CDS COG2894 1224549 1225361 - [D] Septum formation inhibitor-activating ATPase minC CDS COG0850 1225385 1226080 - [D] Septum formation inhibitor 627 ycgJ CDS NA 1226600 1226968 + NA 628 pliG CDS ROG8156 1227071 1227472 - NA 629 ymgN CDS NA 1227368 1227427 + NA 630 ycgL CDS COG3100 1227681 1228007 + [S] Uncharacterized protein conserved in bacteria 631 ycgM CDS COG0179 1228079 1228738 + [Q] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) ycgN CDS COG2983 1228815 1229276 + [S] Uncharacterized conserved protein 632 hlyE CDS ROG5138 1229483 1230394 - NA 633 umuD CDS COG1974 1230767 1231186 + [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) umuC CDS COG0389 1231186 1232454 + [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair 634 dsbB CDS COG1495 1232500 1233030 - [O] Disulfide bond formation protein DsbB nhaB CDS COG3067 1233176 1234717 - [P] Na+/H+ antiporter 635 fadR CDS COG2186 1234938 1235657 + [K] Transcriptional regulators 636 ycgB CDS COG2719 1235709 1237241 - [S] Uncharacterized conserved protein 637 dadA CDS COG0665 1237571 1238869 + [E] Glycine/D-amino acid oxidases (deaminating) dadX CDS COG0787 1238879 1239949 + [M] Alanine racemase 638 ymgM CDS NA 1240260 1240463 + NA 639 cvrA CDS COG3263 1240335 1242071 - [P] NhaP-type Na+/H+ and K+/H+ antiporters with 640 ldcA CDS COG1619 1242166 1243080 - [V] Uncharacterized proteins, homologs of microcin C7 641 emtA CDS COG0741 1243180 1243791 + [M] Soluble lytic murein transglycosylase and related 642 ycgR CDS COG5581 1243793 1244527 - [M] Predicted glycosyltransferase 643 ymgE CDS COG2261 1244728 1244982 + [S] Predicted membrane protein 644 ycgY CDS NA 1245160 1245600 + NA 645 treA CDS COG1626 1245679 1247376 - [G] Neutral trehalase 646 dhaM CDS COG3412 1247696 1249114 - [S] Uncharacterized protein conserved in bacteria dhaL CDS COG2376 1249125 1249757 - [G] Dihydroxyacetone kinase dhaK CDS COG2376 1249768 1250838 - [G] Dihydroxyacetone kinase 647 dhaR CDS COG3284 1251066 1252985 + [QK] Transcriptional activator of acetoin/glycerol metabolism 648 ycgV CDS COG3468 1253085 1255952 - [MU] Type V secretory pathway, adhesin AidA 649 ychF CDS COG0012 1256721 1257812 - [J] Predicted GTPase, probable translation factor pth CDS COG0193 1257929 1258513 - [J] Peptidyl-tRNA hydrolase 650 ychH CDS NA 1258791 1259069 + NA 651 dauA CDS COG0659 1259124 1260803 - [P] Sulfate permease and related transporters (MFS 652 prs CDS COG0462 1260928 1261875 - [FE] Phosphoribosylpyrophosphate synthetase ispE CDS COG1947 1262026 1262877 - [I] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase lolB CDS COG3017 1262877 1263500 - [M] Outer membrane lipoprotein involved in outer 653 hemA CDS COG0373 1263714 1264970 + [H] Glutamyl-tRNA reductase prfA CDS COG0216 1265012 1266094 + [J] Protein chain release factor A prmC CDS COG2890 1266094 1266927 + [J] Methylase of polypeptide chain release factors ychQ CDS COG3094 1266924 1267316 + [S] Uncharacterized protein conserved in bacteria ychA CDS COG2912 1267320 1268129 + [S] Uncharacterized conserved protein kdsA CDS COG2877 1268165 1269019 + [M] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 654 ldrA CDS NA 1269168 1269275 - NA 655 ldrB CDS NA 1269703 1269810 - NA 656 ldrC CDS NA 1270238 1270345 - NA 657 chaA CDS COG0387 1270749 1271849 - [P] Ca2+/H+ antiporter 658 chaB CDS COG4572 1272119 1272349 + [R] Putative cation transport regulator 659 chaC CDS COG3703 1272507 1273202 + [P] Uncharacterized protein involved in cation transport 660 ychN CDS COG1553 1273246 1273599 - [P] Uncharacterized conserved protein involved in intracellular 661 ychO CDS ROG3089 1273784 1275178 + NA 662 narL CDS COG2197 1275179 1275829 - [TK] Response regulator containing a CheY-like receiver narX CDS COG3850 1275822 1277618 - [T] Signal transduction histidine kinase, nitrate/nitrite-specific 663 narK CDS COG2223 1277957 1279348 + [P] Nitrate/nitrite transporter 664 narG CDS COG5013 1279864 1283607 + [C] Nitrate reductase alpha subunit narH CDS COG1140 1283604 1285142 + [C] Nitrate reductase beta subunit narJ CDS COG2180 1285139 1285849 + [C] Nitrate reductase delta subunit narI CDS COG2181 1285849 1286526 + [C] Nitrate reductase gamma subunit 665 ychS CDS NA 1286709 1286984 + NA 666 tpr CDS NA 1287087 1287176 - NA 667 tyrV tRNA NA 1287244 1287328 - NA tyrT tRNA NA 1287538 1287622 - NA 668 purU CDS COG0788 1287782 1288624 - [F] Formyltetrahydrofolate hydrolase ychJ CDS COG3012 1288674 1289132 - [S] Uncharacterized protein conserved in bacteria 669 rssA CDS COG1752 1289245 1290150 + [R] Predicted esterase of the alpha-beta hydrolase 670 rssB CDS COG2204 1290242 1291255 + [T] Response regulator containing CheY-like receiver, AAA-type 671 galU CDS COG1210 1291457 1292365 + [M] UDP-glucose pyrophosphorylase 672 hns CDS COG2916 1292509 1292922 - [R] DNA-binding protein H-NS 673 tdk CDS COG1435 1293527 1294144 + [F] Thymidine kinase 674 adhE CDS COG1454 1295446 1298121 - [C] Alcohol dehydrogenase, class IV 675 ychT CDS NA 1298514 1298567 + NA ychE CDS COG2095 1298598 1299245 + [U] Multiple antibiotic transporter 676 insH21 CDS COG3039 1299567 1300547 + [L] Transposase and inactivated derivatives, IS5 family 677 oppA CDS COG4166 1301182 1302813 + [E] ABC-type oligopeptide transport system, periplasmic component oppB CDS COG0601 1302899 1303819 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppC CDS COG1173 1303834 1304742 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppD CDS COG0444 1304754 1305767 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component oppF CDS COG4608 1305764 1306768 + [E] ABC-type oligopeptide transport system, ATPase component 678 yciU CDS COG3099 1306821 1307150 - [S] Uncharacterized protein conserved in bacteria clsA CDS COG1502 1307185 1308645 - [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes 679 yciY CDS NA 1308788 1308961 + NA 680 kch CDS COG1226 1309016 1310269 - [P] Kef-type K+ transport systems, predicted NAD-binding 681 yciI CDS COG2350 1310569 1310865 - [S] Uncharacterized protein conserved in bacteria 682 tonB CDS COG0810 1311089 1311808 + [M] Periplasmic protein TonB, links inner and 683 yciA CDS COG1607 1311848 1312246 - [I] Acyl-CoA hydrolase 684 yciB CDS COG2917 1312351 1312890 - [D] Intracellular septation protein A yciC CDS ROG3022 1312920 1313663 - NA 685 ompW CDS COG3047 1314020 1314658 + [M] Outer membrane protein W 686 yciE CDS COG3685 1314718 1315224 - [S] Uncharacterized protein conserved in bacteria yciF CDS COG3685 1315270 1315770 - [S] Uncharacterized protein conserved in bacteria yciG CDS COG3729 1315856 1316035 - [R] General stress protein 687 trpA CDS COG0159 1316416 1317222 - [E] Tryptophan synthase alpha chain trpB CDS COG0133 1317222 1318415 - [E] Tryptophan synthase beta chain trpC CDS COG0134 1318427 1319788 - [E] Indole-3-glycerol phosphate synthase trpD CDS COG0547 1319789 1321384 - [E] Anthranilate phosphoribosyltransferase trpE CDS COG0147 1321384 1322946 - [EH] Anthranilate/para-aminobenzoate synthases component I 688 trpL CDS NA 1323038 1323082 - NA 689 rnm CDS COG0613 1323220 1324101 + [R] Predicted metal-dependent phosphoesterases (PHP family) yciO CDS COG0009 1324098 1324718 + [J] Putative translation factor (SUA5) yciQ CDS ROG1462 1324746 1326641 + NA 690 rluB CDS COG1187 1326852 1327727 + [J] 16S rRNA uridine-516 pseudouridylate synthase and 691 btuR CDS COG2109 1327767 1328357 - [H] ATP:corrinoid adenosyltransferase yciK CDS COG0300 1328354 1329112 - [R] Short-chain dehydrogenases of various substrate specificities 692 sohB CDS COG0616 1329332 1330381 + [OU] Periplasmic serine proteases (ClpP class) 693 yciN CDS NA 1330417 1330668 - NA 694 topA CDS COG0550 1331048 1333645 + [L] Topoisomerase IA 695 cysB CDS COG0583 1333855 1334829 + [K] Transcriptional regulator 696 ymiA CDS COG0392 1335148 1335288 + [S] Predicted integral membrane protein yciX CDS NA 1335291 1335458 + NA 697 ymiC CDS NA 1335572 1335667 + NA 698 acnA CDS COG1048 1335831 1338506 + [C] Aconitase A 699 ribA CDS COG0807 1338570 1339160 - [H] GTP cyclohydrolase II 700 pgpB CDS COG0671 1339330 1340094 + [I] Membrane-associated phospholipid phosphatase 701 lapA CDS COG3771 1340243 1340551 + [S] Predicted membrane protein lapB CDS COG2956 1340558 1341727 + [G] Predicted N-acetylglucosaminyl transferase 702 pyrF CDS COG0284 1341921 1342658 + [F] Orotidine-5'-phosphate decarboxylase yciH CDS COG0023 1342658 1342984 + [J] Translation initiation factor 1 (eIF-1/SUI1) and 703 osmB CDS ROG6708 1343110 1343328 - NA 704 yciT CDS COG1349 1343597 1344346 - [KG] Transcriptional regulators of sugar metabolism 705 yciZ CDS NA 1344436 1344609 - NA 706 ymiD CDS NA 1344647 1344775 + NA 707 pdeR CDS COG2200 1344757 1346742 - [T] FOG: EAL domain 708 ymiB CDS NA 1346796 1346900 + NA 709 rnb CDS COG4776 1346978 1348912 - [K] Exoribonuclease II 710 yciW CDS COG4950 1348980 1350107 - [S] Uncharacterized protein conserved in bacteria 711 fabI CDS COG0623 1350251 1351039 - [I] Enoyl-[acyl-carrier-protein] reductase (NADH) 712 ycjD CDS COG2852 1351407 1351760 - [S] Uncharacterized protein conserved in bacteria sapF CDS COG4167 1351828 1352634 - [V] ABC-type antimicrobial peptide transport system, ATPase sapD CDS COG4170 1352636 1353628 - [V] ABC-type antimicrobial peptide transport system, ATPase sapC CDS COG4171 1353628 1354518 - [V] ABC-type antimicrobial peptide transport system, permease sapB CDS COG4168 1354505 1355470 - [V] ABC-type antimicrobial peptide transport system, permease sapA CDS COG0747 1355467 1357110 - [E] ABC-type dipeptide transport system, periplasmic component 713 ymjA CDS NA 1357423 1357668 - NA 714 puuP CDS COG0531 1357802 1359187 - [E] Amino acid transporters ymjE CDS NA 1359177 1359341 - NA 715 puuA CDS COG0174 1359490 1360908 - [E] Glutamine synthetase 716 puuD CDS COG2071 1361120 1361884 + [R] Predicted glutamine amidotransferases puuR CDS COG1396 1361911 1362468 + [K] Predicted transcriptional regulators 717 puuC CDS COG1012 1362743 1364230 + [C] NAD-dependent aldehyde dehydrogenases puuB CDS COG0665 1364232 1365512 + [E] Glycine/D-amino acid oxidases (deaminating) puuE CDS COG0160 1365550 1366815 + [E] 4-aminobutyrate aminotransferase and related aminotransferases 718 pspF CDS COG1221 1366935 1367912 - [KT] Transcriptional regulators containing an AAA-type ATPase 719 pspA CDS COG1842 1368079 1368747 + [KT] Phage shock protein A (IM30), suppresses pspB CDS ROG0730 1368801 1369025 + NA pspC CDS COG1983 1369025 1369384 + [KT] Putative stress-responsive transcriptional regulator pspD CDS NA 1369393 1369614 + NA 720 pspE CDS COG0607 1369689 1370003 + [P] Rhodanese-related sulfurtransferase 721 ycjM CDS COG0366 1370216 1371895 + [G] Glycosidases ycjN CDS COG1653 1371909 1373201 + [G] ABC-type sugar transport system, periplasmic component ycjO CDS COG1175 1373222 1374103 + [G] ABC-type sugar transport systems, permease components ycjP CDS COG0395 1374090 1374932 + [G] ABC-type sugar transport system, permease component ycjQ CDS COG1063 1374963 1376015 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases ycjR CDS COG1082 1376034 1376822 + [G] Sugar phosphate isomerases/epimerases ycjS CDS COG0673 1376832 1377887 + [R] Predicted dehydrogenases and related proteins ycjT CDS COG1554 1377884 1380151 + [G] Trehalose and maltose hydrolases (possible phosphorylases) ycjU CDS COG0637 1380148 1380807 + [R] Predicted phosphatase/phosphohexomutase 722 ompG CDS ROG0333 1381947 1382852 + NA 723 ycjW CDS COG1609 1382963 1383961 - [K] Transcriptional regulators 724 ycjX CDS COG3106 1384117 1385514 + [R] Predicted ATPase ycjF CDS COG3768 1385511 1386572 + [S] Predicted membrane protein tyrR CDS COG3283 1386720 1388261 + [KE] Transcriptional regulator of aromatic amino acids 725 tpx CDS COG2077 1388305 1388811 - [O] Peroxiredoxin 726 ycjG CDS COG4948 1388930 1389895 + [MR] L-alanine-DL-glutamate epimerase and related enzymes of 727 mpaA CDS COG2866 1389870 1390598 - [E] Predicted carboxypeptidase 728 ymjC CDS COG0702 1390680 1390862 - [MG] Predicted nucleoside-diphosphate-sugar epimerases ymjD CDS NA 1390868 1390933 - NA ycjY CDS COG1073 1390933 1391853 - [R] Hydrolases of the alpha/beta superfamily 729 pgrR CDS COG0583 1391991 1392890 + [K] Transcriptional regulator 730 mppA CDS COG4166 1393227 1394840 + [E] ABC-type oligopeptide transport system, periplasmic component 731 ynaI CDS COG0668 1394891 1395922 - [M] Small-conductance mechanosensitive channel 732 insH4 CDS COG3039 1396112 1397092 + [L] Transposase and inactivated derivatives, IS5 family 733 ynaJ CDS COG0601 1397365 1397622 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 734 uspE CDS COG0589 1397672 1398622 - [T] Universal stress protein UspA and related fnr CDS COG0664 1398774 1399526 - [T] cAMP-binding proteins - catabolite gene activator 735 ogt CDS COG0350 1399721 1400236 - [L] Methylated DNA-protein cysteine methyltransferase abgT CDS COG2978 1400247 1401773 - [H] Putative p-aminobenzoyl-glutamate transporter abgB CDS COG0624 1401810 1403255 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases abgA CDS COG1473 1403255 1404565 - [R] Metal-dependent amidase/aminoacylase/carboxypeptidase 736 abgR CDS COG0583 1404741 1405649 + [K] Transcriptional regulator 737 smrA CDS COG2840 1405979 1406542 + [S] Uncharacterized protein conserved in bacteria 738 dgcM CDS COG2199 1406563 1407795 - [T] FOG: GGDEF domain 739 ynaN CDS NA 1407989 1408036 + NA zntB CDS COG0598 1408050 1409033 + [P] Mg2+ and Co2+ transporters 740 ynaL CDS NA 1409308 1409481 + NA dbpA CDS COG0513 1409511 1410884 + [LKJ] Superfamily II DNA and RNA helicases 741 ttcA CDS COG0037 1411013 1411948 - [D] Predicted ATPase of the PP-loop superfamily intR CDS COG0582 1412000 1413235 - [L] Integrase xisR CDS NA 1413237 1413452 - NA 742 rcbA CDS NA 1413531 1413740 - NA ralR CDS NA 1413733 1413927 - NA recT CDS COG3723 1413984 1414793 - [L] Recombinational DNA repair protein (RecE pathway) recE CDS ROG6166 1414786 1417386 - NA 743 racC CDS NA 1417488 1417763 - NA 744 ydaE CDS NA 1417838 1418008 - NA kilR CDS NA 1418008 1418229 - NA 745 sieB CDS ROG7057 1418671 1419159 + NA 746 ydaF CDS NA 1419156 1419311 - NA ydaG CDS ROG3250 1419322 1419456 - NA 747 racR CDS ROG0229 1419765 1420241 - NA 748 ydaS CDS COG4197 1420365 1420661 + [S] Uncharacterized protein conserved in bacteria, prophage-related ydaT CDS NA 1420684 1421106 + NA ydaU CDS COG3756 1421119 1421976 + [S] Uncharacterized protein conserved in bacteria ydaV CDS COG1484 1421983 1422729 + [L] DNA replication protein ydaW CDS ROG5980 1422752 1423312 + NA 749 rzoR CDS NA 1423400 1423585 + NA 750 trkG CDS COG0168 1423782 1425239 + [P] Trk-type K+ transport systems, membrane components 751 ynaK CDS ROG8515 1425377 1425640 + NA ydaY CDS NA 1425621 1425980 + NA 752 ynaA CDS COG5281 1426454 1427482 + [S] Phage-related minor tail protein lomR CDS COG3637 1427389 1427598 + [M] Opacity protein and related surface antigens 753 lomR_2 CDS COG3637 1428796 1428984 + [M] Opacity protein and related surface antigens 754 insH5 CDS COG3039 1427746 1428726 - [L] Transposase and inactivated derivatives, IS5 family 755 stfR CDS NA 1429049 1432411 + NA tfaR CDS NA 1432411 1432986 + NA 756 pinR CDS COG1961 1433084 1433674 - [L] Site-specific recombinases, DNA invertase Pin homologs 757 ynaE CDS ROG5360 1433991 1434224 - NA 758 ynaM CDS NA 1434293 1434406 - NA 759 uspF CDS COG0589 1435185 1435619 - [T] Universal stress protein UspA and related 760 ompN CDS COG3203 1435760 1436893 - [M] Outer membrane protein (porin) 761 ydbK CDS COG0674 1437260 1440784 - [C] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, 762 ydbJ CDS COG3042 1441058 1441324 + [R] Putative hemolysin 763 hslJ CDS COG3187 1441321 1441743 - [O] Heat shock protein 764 ldhA CDS COG1052 1441854 1442843 - [CHR] Lactate dehydrogenase and related dehydrogenases 765 ydbH CDS ROG3879 1443051 1445690 + NA ynbE CDS ROG0130 1445687 1445872 + NA ydbL CDS COG3784 1445880 1446206 + [S] Uncharacterized protein conserved in bacteria 766 feaR CDS COG2207 1446378 1447283 - [K] AraC-type DNA-binding domain-containing proteins 767 feaB CDS COG1012 1447519 1449018 + [C] NAD-dependent aldehyde dehydrogenases 768 tynA CDS COG3733 1449076 1451349 - [Q] Cu2+-containing amine oxidase 769 paaZ CDS COG2030 1451597 1453642 - [I] Acyl dehydratase 770 paaA CDS COG3396 1453927 1454856 + [S] Uncharacterized conserved protein paaB CDS COG3460 1454868 1455155 + [Q] Uncharacterized enzyme of phenylacetate metabolism paaC CDS COG3396 1455164 1455910 + [S] Uncharacterized conserved protein paaD CDS COG2151 1455925 1456422 + [R] Predicted metal-sulfur cluster biosynthetic enzyme paaE CDS COG1018 1456430 1457500 + [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 paaF CDS COG1024 1457497 1458264 + [I] Enoyl-CoA hydratase/carnithine racemase paaG CDS COG1024 1458264 1459052 + [I] Enoyl-CoA hydratase/carnithine racemase paaH CDS COG1250 1459054 1460481 + [I] 3-hydroxyacyl-CoA dehydrogenase paaI CDS COG2050 1460471 1460893 + [Q] Uncharacterized protein, possibly involved in aromatic paaJ CDS COG0183 1460893 1462098 + [I] Acetyl-CoA acetyltransferase paaK CDS COG1541 1462125 1463438 + [H] Coenzyme F390 synthetase paaX CDS COG3327 1463539 1464489 + [K] Phenylacetic acid-responsive transcriptional repressor paaY CDS COG0663 1464471 1465061 + [R] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 771 ynbG CDS NA 1465165 1465230 - NA 772 ydbA CDS ROG0140 1465392 1467909 + NA 773 ydbA_2 CDS NA 1469246 1469295 + NA 774 ydbA_3 CDS NA 1470519 1474013 + NA 775 insD2 CDS COG2801 1467921 1468826 - [L] Transposase and inactivated derivatives insC2 CDS COG2963 1468784 1469149 - [L] Transposase and inactivated derivatives 776 insI2 CDS COG2826 1469358 1470509 + [L] Transposase and inactivated derivatives, IS30 family 777 pdxI CDS COG0667 1474221 1475081 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 778 ydbD CDS NA 1475144 1477450 + NA 779 ynbA CDS COG0558 1477621 1478226 + [I] Phosphatidylglycerophosphate synthase ynbB CDS COG4589 1478226 1479122 + [R] Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase ynbC CDS COG2267 1479138 1480895 + [I] Lysophospholipase ynbD CDS COG0671 1480909 1482201 + [I] Membrane-associated phospholipid phosphatase 780 azoR CDS COG1182 1482255 1482860 - [I] Acyl carrier protein phosphodiesterase 781 hrpA CDS COG1643 1483061 1486963 + [L] HrpA-like helicases 782 ydcF CDS COG1434 1487235 1488035 + [S] Uncharacterized conserved protein 783 aldA CDS COG1012 1488232 1489671 + [C] NAD-dependent aldehyde dehydrogenases 784 cybB CDS COG3038 1490902 1491432 + [C] Cytochrome B561 785 ydcA CDS NA 1491677 1491850 + NA yncP CDS NA 1491876 1491944 + NA 786 hokB CDS NA 1491922 1492071 - NA mokB CDS NA 1491962 1492129 - NA 787 trg CDS COG0840 1492470 1494110 + [NT] Methyl-accepting chemotaxis protein 788 ydcI CDS COG0583 1494148 1495071 - [K] Transcriptional regulator 789 ydcJ CDS COG5383 1495288 1496631 + [S] Uncharacterized protein conserved in bacteria 790 opgD CDS COG3131 1496856 1498511 + [P] Periplasmic glucans biosynthesis protein 791 ydcH CDS COG2841 1498651 1498875 + [S] Uncharacterized protein conserved in bacteria 792 rimL CDS COG1670 1498938 1499477 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins 793 ydcK CDS ROG3573 1499469 1500449 - NA 794 tehA CDS COG1275 1500573 1501565 + [P] Tellurite resistance protein and related permeases tehB CDS COG0500 1501562 1502155 + [QR] SAM-dependent methyltransferases 795 ydcL CDS ROG4587 1502457 1503125 + NA 796 insQ CDS COG0675 1503657 1504865 + [L] Transposase and inactivated derivatives 797 ydcO CDS COG3135 1504905 1506080 - [Q] Uncharacterized protein involved in benzoate metabolism 798 sutR CDS COG1396 1506172 1506708 + [K] Predicted transcriptional regulators rlhA CDS COG0826 1506781 1508742 + [O] Collagenase and related proteases 799 yncJ CDS NA 1508834 1509064 - NA 800 hicA CDS ROG8027 1509286 1509462 + NA hicB CDS COG1598 1509508 1509924 + [S] Uncharacterized conserved protein 801 ydcR CDS COG1167 1510003 1511409 + [KE] Transcriptional regulators containing a DNA-binding HTH 802 ydcS CDS COG0687 1511654 1512799 + [E] Spermidine/putrescine-binding periplasmic protein ydcT CDS COG3842 1512817 1513830 + [E] ABC-type spermidine/putrescine transport systems, ATPase components ydcU CDS COG1176 1513831 1514772 + [E] ABC-type spermidine/putrescine transport system, permease component ydcV CDS COG1177 1514762 1515556 + [E] ABC-type spermidine/putrescine transport system, permease component patD CDS COG1012 1515578 1517002 + [C] NAD-dependent aldehyde dehydrogenases 803 yncL CDS NA 1517099 1517194 - NA 804 ortT CDS NA 1517389 1517562 + NA 805 ydcY CDS NA 1517648 1517881 + NA 806 ydcZ CDS COG3238 1517882 1518331 - [S] Uncharacterized protein conserved in bacteria mnaT CDS COG1247 1518328 1518846 - [M] Sortase and related acyltransferases 807 curA CDS COG2130 1519027 1520064 + [R] Putative NADP-dependent oxidoreductases 808 mcbR CDS COG1802 1520262 1520927 + [K] Transcriptional regulators 809 yncD CDS COG1629 1520963 1523065 - [P] Outer membrane receptor proteins, mostly Fe 810 yncE CDS COG3391 1523307 1524368 + [S] Uncharacterized conserved protein 811 ansP CDS COG1113 1524481 1525980 - [E] Gamma-aminobutyrate permease and related permeases 812 yncG CDS NA 1526247 1526864 + NA 813 yncH CDS NA 1526940 1527152 + NA 814 ydcD CDS ROG8282 1529922 1530404 + NA 815 yncO CDS NA 1530319 1530504 - NA 816 ydcC CDS COG5433 1531816 1532952 + [L] Transposase 817 pptA CDS COG1942 1533052 1533285 + [R] Uncharacterized protein, 4-oxalocrotonate tautomerase homolog 818 yddH CDS COG1853 1533282 1533851 - [R] Conserved protein/domain typically associated with flavoprotein 819 nhoA CDS COG2162 1534024 1534869 + [Q] Arylamine N-acetyltransferase 820 yddE CDS COG0384 1534965 1535858 - [R] Predicted epimerase, PhzC/PhzF homolog 821 narV CDS COG2181 1535937 1536617 - [C] Nitrate reductase gamma subunit narW CDS COG2180 1536614 1537309 - [C] Nitrate reductase delta subunit narY CDS COG1140 1537309 1538853 - [C] Nitrate reductase beta subunit narZ CDS COG5013 1538850 1542590 - [C] Nitrate reductase alpha subunit narU CDS COG2223 1542672 1544060 - [P] Nitrate/nitrite transporter 822 yddK CDS COG4886 1544758 1545714 - [S] Leucine-rich repeat (LRR) protein yddL CDS COG3203 1545738 1546028 - [M] Outer membrane protein (porin) 823 yddG CDS COG0697 1546288 1547169 - [GER] Permeases of the drug/metabolite transporter (DMT) 824 fdnG CDS COG0243 1547401 1550448 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing fdnH CDS COG0437 1550461 1551345 + [C] Fe-S-cluster-containing hydrogenase components 1 fdnI CDS COG2864 1551338 1551991 + [C] Cytochrome b subunit of formate dehydrogenase 825 yddM CDS COG3093 1552398 1552682 - [R] Plasmid maintenance system antidote protein 826 adhP CDS COG1064 1552828 1553838 - [R] Zn-dependent alcohol dehydrogenases maeA CDS COG0281 1553972 1555669 - [C] Malic enzyme 827 sra CDS NA 1555826 1555963 - NA 828 bdm CDS ROG0864 1556065 1556280 - NA 829 osmC CDS COG1764 1556625 1557056 + [O] Predicted redox protein, regulator of disulfide 830 ddpF CDS COG1124 1557112 1558038 - [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component ddpD CDS COG1123 1558031 1559017 - [R] ATPase components of various ABC-type transport ddpC CDS COG1173 1559014 1559910 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components ddpB CDS COG0601 1559907 1560929 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components ddpA CDS COG0747 1560931 1562481 - [E] ABC-type dipeptide transport system, periplasmic component ddpX CDS COG2173 1562495 1563076 - [M] D-alanyl-D-alanine dipeptidase 831 dosP CDS COG2200 1563334 1565733 - [T] FOG: EAL domain dosC CDS COG2199 1565758 1567140 - [T] FOG: GGDEF domain yddY CDS NA 1567178 1567219 - NA 832 digH CDS COG1649 1567504 1568823 - [S] Uncharacterized protein conserved in bacteria 833 gadC CDS COG0531 1568954 1570489 - [E] Amino acid transporters gadB CDS COG0076 1570645 1572045 - [E] Glutamate decarboxylase and related PLP-dependent proteins 834 pqqL CDS COG0612 1572407 1575202 - [R] Predicted Zn-dependent peptidases yddB CDS ROG2295 1575247 1577619 - NA yddA CDS COG4178 1577657 1579342 - [R] ABC-type uncharacterized transport system, permease and 835 yneP CDS NA 1579545 1579667 + NA 836 ydeM CDS COG0641 1579633 1580790 - [R] Arylsulfatase regulator (Fe-S oxidoreductase) ydeN CDS COG3119 1580842 1582524 - [P] Arylsulfatase A and related enzymes 837 ydeO CDS COG2207 1582926 1583687 - [K] AraC-type DNA-binding domain-containing proteins 838 safA CDS NA 1583762 1583959 - NA 839 ydeP CDS COG0243 1584207 1586486 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 840 ydeQ CDS COG3539 1586820 1587734 - [NU] P pilus assembly protein, pilin FimA ydeR CDS COG3539 1587793 1588296 - [NU] P pilus assembly protein, pilin FimA ydeS CDS COG3539 1588309 1588839 - [NU] P pilus assembly protein, pilin FimA ydeT CDS COG3188 1588853 1590001 - [NU] P pilus assembly protein, porin PapC 841 hipA CDS COG3550 1590854 1592176 - [R] Uncharacterized protein related to capsule biosynthesis hipB CDS ROG6392 1592176 1592442 - NA 842 lsrK CDS COG1070 1598617 1600209 - [G] Sugar (pentulose and hexulose) kinases lsrR CDS COG2390 1600288 1601241 - [K] Transcriptional regulator, contains sigma factor-related N-terminal 843 lsrA CDS COG1129 1601490 1603025 + [G] ABC-type sugar transport system, ATPase component lsrC CDS COG1172 1603019 1604047 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components lsrD CDS COG1172 1604047 1605039 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components lsrB CDS COG1879 1605051 1606073 + [G] ABC-type sugar transport system, periplasmic component lsrF CDS COG1830 1606100 1606975 + [G] DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes lsrG CDS COG1359 1606999 1607289 + [S] Uncharacterized conserved protein 844 tam CDS COG4106 1607346 1608104 + [R] Trans-aconitate methyltransferase 845 yneE CDS COG3781 1608108 1609022 - [S] Predicted membrane protein 846 uxaB CDS COG0246 1609229 1610680 - [G] Mannitol-1-phosphate/altronate dehydrogenases 847 dgcF CDS COG2199 1610907 1611854 - [T] FOG: GGDEF domain 848 yneG CDS ROG2377 1611966 1612325 - NA glsB CDS COG2066 1612325 1613251 - [E] Glutaminase sad CDS COG1012 1613315 1614703 - [C] NAD-dependent aldehyde dehydrogenases 849 yneJ CDS COG0583 1614804 1615685 + [K] Transcriptional regulator 850 yneK CDS NA 1615763 1616878 + NA 851 ydeA CDS COG2814 1617028 1618218 + [G] Arabinose efflux permease 852 marC CDS COG2095 1618243 1618908 - [U] Multiple antibiotic transporter 853 marR CDS COG1846 1619120 1619554 + [K] Transcriptional regulators marA CDS COG2207 1619574 1619957 + [K] AraC-type DNA-binding domain-containing proteins marB CDS NA 1619989 1620207 + NA 854 eamA CDS COG0697 1620238 1621137 - [GER] Permeases of the drug/metabolite transporter (DMT) 855 ydeE CDS ROG2472 1621332 1622519 + NA 856 mgtS CDS NA 1622646 1622741 + NA mgtT CDS NA 1622741 1622845 + NA 857 dgcZ CDS COG3706 1622960 1623850 - [T] Response regulator containing a CheY-like receiver 858 ydeI CDS COG3111 1624105 1624497 - [S] Uncharacterized conserved protein 859 ydeJ CDS COG1546 1624773 1625291 + [R] Uncharacterized protein (competence- and mitomycin-induced) 860 dcp CDS COG0339 1625335 1627380 - [E] Zn-dependent oligopeptidases 861 ydfG CDS COG4221 1627517 1628263 + [R] Short-chain alcohol dehydrogenase of unknown specificity 862 rspR CDS COG1802 1628352 1629038 + [K] Transcriptional regulators 863 ydfZ CDS NA 1629215 1629418 + NA 864 ydfI CDS COG0246 1629453 1630913 - [G] Mannitol-1-phosphate/altronate dehydrogenases ydfJ CDS COG0477 1631002 1632285 - [GEPR] Permeases of the major facilitator superfamily 865 ynfT CDS NA 1632890 1633003 + NA 866 ydfK CDS NA 1633072 1633305 + NA 867 pinQ CDS COG1961 1633622 1634212 + [L] Site-specific recombinases, DNA invertase Pin homologs 868 tfaQ CDS NA 1634310 1634885 - NA stfQ CDS NA 1634885 1635847 - NA nohA CDS COG4220 1635798 1636367 - [L] Phage DNA packaging protein, Nu1 subunit 869 ynfO CDS NA 1636756 1636989 + NA ydfO CDS COG5562 1637047 1637457 + [R] Phage envelope protein 870 gnsB CDS NA 1637609 1637782 - NA 871 ynfN CDS NA 1637954 1638109 - NA 872 ynfR CDS NA 1638188 1638253 - NA ynfQ CDS NA 1638256 1638444 - NA cspI CDS COG1278 1638455 1638667 - [K] Cold shock proteins 873 rzpQ CDS NA 1639030 1639527 - NA rzoQ CDS NA 1639080 1639334 - NA 874 rrrQ CDS COG3772 1639524 1640057 - [R] Phage-related lysozyme (muraminidase) ydfR CDS NA 1640054 1640365 - NA essQ CDS NA 1640370 1640585 - NA 875 ynfU CDS ROG0525 1640805 1640975 + NA 876 cspB CDS COG1278 1641339 1641554 - [K] Cold shock proteins 877 cspF CDS COG1278 1641855 1642067 + [K] Cold shock proteins ynfS CDS NA 1642122 1642211 + NA 878 ydfT CDS NA 1642489 1643241 - NA ydfU CDS ROG3846 1643255 1644304 - NA 879 rem CDS NA 1644651 1644902 - NA 880 hokD CDS NA 1645119 1645274 - NA 881 relE CDS COG2026 1645346 1645633 - [JD] Cytotoxic translational repressor of toxin-antitoxin stability relB CDS COG3077 1645633 1645872 - [L] DNA-damage-inducible protein J 882 ydfV CDS NA 1645897 1646202 + NA 883 flxA CDS ROG3559 1646405 1646737 + NA 884 ydfW CDS NA 1647174 1647323 - NA ydfX CDS NA 1647346 1647636 - NA dicC CDS NA 1647620 1647850 - NA 885 dicA CDS COG2932 1647934 1648341 + [K] Predicted transcriptional regulator 886 ydfA CDS NA 1648508 1648663 + NA ydfB CDS NA 1648665 1648793 + NA ydfC CDS NA 1648823 1649041 + NA 887 dicB CDS NA 1649609 1649797 + NA ydfD CDS NA 1649794 1649985 + NA 888 ynfP CDS NA 1652728 1652838 - NA rspB CDS COG1063 1652896 1653915 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases rspA CDS COG4948 1653927 1655141 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of 889 ynfA CDS COG1742 1655347 1655673 - [S] Uncharacterized conserved protein 890 ynfB CDS ROG7712 1655808 1656149 + NA speG CDS COG1670 1656184 1656744 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins 891 ynfC CDS NA 1656747 1657457 - NA 892 ynfD CDS NA 1657565 1657870 + NA 893 ynfE CDS COG0243 1658069 1660495 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing ynfF CDS COG0243 1660556 1662979 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing ynfG CDS COG0437 1662990 1663607 + [C] Fe-S-cluster-containing hydrogenase components 1 ynfH CDS COG3302 1663609 1664463 + [R] DMSO reductase anchor subunit dmsD CDS COG3381 1664506 1665120 + [R] Uncharacterized component of anaerobic dehydrogenases 894 clcB CDS COG0038 1665315 1666571 + [P] Chloride channel protein EriC 895 bidA CDS COG0132 1666524 1667219 - [H] Dethiobiotin synthetase 896 mlc CDS COG1940 1667344 1668564 - [KG] Transcriptional regulator/sugar kinase 897 ynfL CDS COG0583 1668699 1669592 - [K] Transcriptional regulator 898 ynfM CDS COG0477 1669699 1670952 + [GEPR] Permeases of the major facilitator superfamily 899 asr CDS NA 1671376 1671684 + NA 900 ydgU CDS NA 1671777 1671860 + NA 901 ydgD CDS COG3591 1671960 1672781 + [E] V8-like Glu-specific endopeptidase 902 mdtI CDS COG2076 1672820 1673149 - [P] Membrane transporters of cations and cationic mdtJ CDS COG2076 1673136 1673501 - [P] Membrane transporters of cations and cationic 903 mdtU CDS NA 1673608 1673709 - NA 904 tqsA CDS COG0628 1673913 1674947 + [R] Predicted permease 905 pntB CDS COG1282 1674972 1676360 - [C] NAD/NADP transhydrogenase beta subunit pntA CDS COG3288 1676371 1677903 - [C] NAD/NADP transhydrogenase alpha subunit 906 ydgH CDS NA 1678427 1679371 + NA 907 ydgI CDS COG0531 1679557 1680939 + [E] Amino acid transporters folM CDS COG1028 1680976 1681698 + [IQR] Dehydrogenases with different specificities (related to 908 ydgC CDS COG3136 1681695 1682030 - [R] Uncharacterized membrane protein required for alginate 909 rstA CDS COG0745 1682159 1682878 + [TK] Response regulators consisting of a CheY-like rstB CDS COG2205 1682882 1684183 + [T] Osmosensitive K+ channel histidine kinase 910 tus CDS NA 1684259 1685188 + NA 911 fumC CDS COG0114 1685185 1686588 - [C] Fumarase fumA CDS COG1951 1686731 1688377 - [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class 912 manA CDS COG1482 1688576 1689751 + [G] Phosphomannose isomerase 913 ydgA CDS COG5339 1689852 1691360 + [S] Uncharacterized protein conserved in bacteria 914 uidC CDS ROG8456 1691586 1692851 - NA uidB CDS COG2211 1692890 1694263 - [G] Na+/melibiose symporter and related transporters uidA CDS COG3250 1694260 1696071 - [G] Beta-galactosidase/beta-glucuronidase 915 uidR CDS COG1309 1696462 1697052 - [K] Transcriptional regulator hdhA CDS COG1028 1697273 1698040 - [IQR] Dehydrogenases with different specificities (related to malI CDS COG1609 1698152 1699180 - [K] Transcriptional regulators 916 malX CDS COG1263 1699355 1700947 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific malY CDS COG1168 1700957 1702129 + [E] Bifunctional PLP-dependent enzyme with beta-cystathionase and 917 add CDS COG1816 1702233 1703234 + [F] Adenosine deaminase 918 ydgJ CDS COG0673 1703268 1704308 - [R] Predicted dehydrogenases and related proteins 919 blr CDS NA 1704551 1704676 + NA 920 cnu CDS NA 1704949 1705164 + NA 921 ydgK CDS NA 1705250 1705690 + NA 922 rsxA CDS COG4657 1705767 1706348 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfA rsxB CDS COG2878 1706348 1706926 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfB rsxC CDS COG4656 1706919 1709141 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC rsxD CDS COG4658 1709142 1710200 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD rsxG CDS COG4659 1710204 1710824 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfG rsxE CDS COG4660 1710828 1711523 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfE nth CDS COG0177 1711523 1712158 + [L] Predicted EndoIII-related endonuclease 923 dtpA CDS COG3104 1712769 1714271 + [E] Dipeptide/tripeptide permease gstA CDS COG0625 1714377 1714982 + [O] Glutathione S-transferase 924 pdxY CDS COG2240 1715026 1715889 - [H] Pyridoxal/pyridoxine/pyridoxamine kinase tyrS CDS COG0162 1715948 1717222 - [J] Tyrosyl-tRNA synthetase pdxH CDS COG0259 1717351 1718007 - [H] Pyridoxamine-phosphate oxidase mliC CDS COG3895 1718066 1718395 - [R] Predicted periplasmic protein 925 anmK CDS COG2377 1718493 1719602 - [O] Predicted molecular chaperone distantly related to 926 slyB CDS COG3133 1719876 1720343 + [M] Outer membrane lipoprotein 927 slyA CDS COG1846 1720390 1720824 - [K] Transcriptional regulators 928 ydhI CDS NA 1721025 1721261 + NA ydhJ CDS COG1566 1721264 1722121 + [V] Multidrug resistance efflux pump ydhK CDS COG1289 1722121 1724133 + [S] Predicted membrane protein 929 sodC CDS COG2032 1724134 1724655 - [P] Cu/Zn superoxide dismutase 930 ydhF CDS COG4989 1724736 1725632 - [R] Predicted oxidoreductase ydhL CDS COG3313 1725681 1725920 - [R] Predicted Fe-S protein 931 nemR CDS COG1309 1726023 1726622 + [K] Transcriptional regulator nemA CDS COG1902 1726659 1727756 + [C] NADH:flavin oxidoreductases, Old Yellow Enzyme family gloA CDS COG0346 1727837 1728244 + [E] Lactoylglutathione lyase and related lyases 932 rnt CDS COG0847 1728347 1728994 + [L] DNA polymerase III, epsilon subunit and 933 lhr CDS COG1201 1729087 1733703 + [R] Lhr-like helicases 934 grxD CDS COG0278 1733754 1734101 - [O] Glutaredoxin-related protein 935 mepH CDS COG0791 1734435 1735250 + [M] Cell wall-associated hydrolases (invasion-associated proteins) 936 sodB CDS COG0605 1735378 1735959 + [P] Superoxide dismutase 937 ydhP CDS COG2814 1736121 1737290 - [G] Arabinose efflux permease 938 cydH CDS NA 1737456 1737545 - NA 939 purR CDS COG1609 1737844 1738869 + [K] Transcriptional regulators 940 punR CDS COG0583 1738866 1739798 - [K] Transcriptional regulator 941 punC CDS COG0477 1739911 1741122 + [GEPR] Permeases of the major facilitator superfamily 942 cfa CDS COG2230 1741413 1742561 + [M] Cyclopropane fatty acid synthase and related 943 ribC CDS COG0307 1742601 1743242 - [H] Riboflavin synthase alpha chain 944 mdtK CDS COG0534 1743457 1744830 + [V] Na+-driven multidrug efflux pump 945 ydhQ CDS COG3468 1744871 1746127 - [MU] Type V secretory pathway, adhesin AidA 946 valV tRNA NA 1746435 1746511 + NA valW tRNA NA 1746516 1746592 + NA 947 ydhR CDS ROG2175 1746700 1747005 + NA 948 ydhS CDS COG4529 1747131 1748735 + [S] Uncharacterized protein conserved in bacteria 949 ydhT CDS ROG6905 1748747 1749559 - NA ydhU CDS COG4117 1749563 1750348 - [C] Thiosulfate reductase cytochrome B subunit (membrane ydhX CDS COG0437 1750345 1751013 - [C] Fe-S-cluster-containing hydrogenase components 1 950 ydhW CDS NA 1751077 1751724 - NA ydhV CDS COG2414 1751728 1753830 - [C] Aldehyde:ferredoxin oxidoreductase ydhY CDS COG1142 1753851 1754477 - [C] Fe-S-cluster-containing hydrogenase components 2 951 fumD CDS NA 1754932 1755141 - NA 952 ynhH CDS NA 1755496 1755690 + NA pykF CDS COG0469 1755698 1757110 + [G] Pyruvate kinase 953 lpp CDS COG4238 1757421 1757657 + [M] Murein lipoprotein 954 ldtE CDS COG1376 1757721 1758725 - [S] Uncharacterized protein conserved in bacteria 955 sufE CDS COG2166 1758874 1759290 - [R] SufE protein probably involved in Fe-S sufS CDS COG0520 1759303 1760523 - [E] Selenocysteine lyase sufD CDS COG0719 1760520 1761791 - [O] ABC-type transport system involved in Fe-S sufC CDS COG0396 1761766 1762512 - [O] ABC-type transport system involved in Fe-S sufB CDS COG0719 1762522 1764009 - [O] ABC-type transport system involved in Fe-S sufA CDS COG0316 1764018 1764386 - [S] Uncharacterized conserved protein 956 ydiH CDS NA 1764934 1765122 - NA 957 menI CDS COG2050 1765222 1765632 - [Q] Uncharacterized protein, possibly involved in aromatic ydiJ CDS COG0277 1765629 1768685 - [C] FAD/FMN-containing dehydrogenases 958 ydiK CDS NA 1769074 1770186 + NA 959 ydiL CDS NA 1770615 1770971 + NA 960 ydiM CDS COG0477 1771071 1772285 + [GEPR] Permeases of the major facilitator superfamily ydiN CDS COG0477 1772512 1773777 + [GEPR] Permeases of the major facilitator superfamily ydiB CDS COG0169 1773789 1774655 + [E] Shikimate 5-dehydrogenase aroD CDS COG0710 1774686 1775444 + [E] 3-dehydroquinate dehydratase 961 ydiF CDS COG4670 1775587 1777182 + [I] Acyl CoA:acetate/3-ketoacid CoA transferase ydiO CDS COG1960 1777196 1778347 + [I] Acyl-CoA dehydrogenases 962 ydiP CDS COG2207 1778390 1779301 - [K] AraC-type DNA-binding domain-containing proteins 963 ydiQ CDS COG2086 1779617 1780381 + [C] Electron transfer flavoprotein, beta subunit ydiR CDS COG2025 1780401 1781339 + [C] Electron transfer flavoprotein, alpha subunit ydiS CDS COG0644 1781395 1782684 + [C] Dehydrogenases (flavoproteins) ydiT CDS COG2440 1782681 1782974 + [C] Ferredoxin-like protein fadK CDS COG0318 1782977 1784677 + [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 964 ppsA CDS COG0574 1784734 1787112 - [G] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 965 ppsR CDS COG1806 1787445 1788278 + [S] Uncharacterized protein conserved in bacteria 966 aroH CDS COG0722 1788435 1789481 + [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 967 ydiE CDS COG4256 1789613 1789804 + [P] Hemin uptake protein 968 selO CDS COG0397 1789808 1791244 - [S] Uncharacterized conserved protein 969 rflP CDS NA 1791307 1792020 - NA 970 nlpC CDS COG0791 1792267 1792731 - [M] Cell wall-associated hydrolases (invasion-associated proteins) 971 btuD CDS COG4138 1792809 1793558 - [H] ABC-type cobalamin transport system, ATPase component btuE CDS COG0386 1793558 1794109 - [O] Glutathione peroxidase btuC CDS COG4139 1794172 1795152 - [H] ABC-type cobalamin transport system, permease component 972 ihfA CDS COG0776 1795253 1795552 - [L] Bacterial nucleoid DNA-binding protein pheT CDS COG0072 1795557 1797944 - [J] Phenylalanyl-tRNA synthetase beta subunit pheS CDS COG0016 1797959 1798942 - [J] Phenylalanyl-tRNA synthetase alpha subunit 973 pheM CDS NA 1799226 1799270 - NA 974 rplT CDS COG0292 1799393 1799749 - [J] Ribosomal protein L20 rpmI CDS COG0291 1799802 1799999 - [J] Ribosomal protein L35 infC CDS COG0290 1800096 1800638 - [J] Translation initiation factor 3 (IF-3) thrS CDS COG0441 1800642 1802570 - [J] Threonyl-tRNA synthetase 975 yniD CDS NA 1805165 1805272 + NA 976 ydiY CDS COG3137 1805325 1806083 - [M] Putative salt-induced outer membrane protein 977 pfkB CDS COG1105 1806370 1807299 + [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase 978 ydiZ CDS NA 1807400 1807690 + NA 979 yniA CDS COG3001 1807796 1808656 + [G] Fructosamine-3-kinase 980 yniB CDS NA 1808697 1809233 - NA 981 hxpB CDS COG0637 1809380 1810048 + [R] Predicted phosphatase/phosphohexomutase 982 ydjM CDS COG1988 1810211 1810801 + [R] Predicted membrane-bound metal-dependent hydrolases 983 tcyP CDS COG1823 1810934 1812325 + [R] Predicted Na+/dicarboxylate symporter 984 ydjO CDS NA 1812329 1813132 - NA 985 cedA CDS NA 1813421 1813663 - NA 986 katE CDS COG0753 1813867 1816128 + [P] Catalase 987 chbG CDS COG3394 1816386 1817135 - [S] Uncharacterized protein conserved in bacteria chbF CDS COG1486 1817148 1818500 - [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases chbR CDS COG2207 1818605 1819447 - [K] AraC-type DNA-binding domain-containing proteins chbA CDS COG1447 1819455 1819805 - [G] Phosphotransferase system cellobiose-specific component IIA chbC CDS COG1455 1819856 1821214 - [G] Phosphotransferase system cellobiose-specific component IIC chbB CDS COG1440 1821299 1821619 - [G] Phosphotransferase system cellobiose-specific component IIB 988 osmE CDS ROG1335 1821918 1822256 - NA 989 nadE CDS COG0171 1822458 1823285 + [H] NAD synthase 990 cho CDS COG0322 1823515 1824402 + [L] Nuclease subunit of the excinuclease complex 991 ves CDS COG3758 1824362 1824937 - [S] Uncharacterized protein conserved in bacteria 992 spy CDS COG3678 1825140 1825625 - [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 993 astE CDS COG2988 1825955 1826923 - [E] Succinylglutamate desuccinylase astB CDS COG3724 1826916 1828259 - [E] Succinylarginine dihydrolase astD CDS COG1012 1828256 1829734 - [C] NAD-dependent aldehyde dehydrogenases astA CDS COG3138 1829731 1830765 - [E] Arginine/ornithine N-succinyltransferase beta subunit astC CDS COG4992 1830762 1831982 - [E] Ornithine/acetylornithine aminotransferase 994 xthA CDS COG0708 1832428 1833234 + [L] Exonuclease III 995 ydjX CDS COG0398 1833401 1834111 + [S] Uncharacterized conserved protein ydjY CDS NA 1834116 1834793 + NA ydjZ CDS COG0398 1834808 1835515 + [S] Uncharacterized conserved protein ynjA CDS COG2128 1835515 1836063 + [S] Uncharacterized conserved protein ynjB CDS COG4134 1836073 1837239 + [R] ABC-type uncharacterized transport system, periplasmic component ynjC CDS COG4135 1837212 1838747 + [R] ABC-type uncharacterized transport system, permease component ynjD CDS COG4136 1838747 1839400 + [R] ABC-type uncharacterized transport system, ATPase component ynjE CDS COG2897 1839467 1840774 + [P] Rhodanese-related sulfurtransferase 996 ynjF CDS ROG5552 1840783 1841403 - NA 997 nudG CDS COG1051 1841490 1841897 + [F] ADP-ribose pyrophosphatase 998 ynjH CDS NA 1841863 1842135 - NA 999 gdhA CDS COG0334 1842371 1843714 + [E] Glutamate dehydrogenase/leucine dehydrogenase 1000 ynjI CDS ROG2994 1843831 1844871 - NA 1001 topB CDS COG0550 1844999 1846960 - [L] Topoisomerase IA selD CDS COG0709 1846965 1848008 - [E] Selenophosphate synthase 1002 ydjA CDS COG0778 1848125 1848676 - [C] Nitroreductase 1003 sppA CDS COG0616 1848837 1850693 + [OU] Periplasmic serine proteases (ClpP class) 1004 ansA CDS COG0252 1850860 1851876 + [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D pncA CDS COG1335 1851887 1852528 + [Q] Amidases related to nicotinamidase 1005 ydjE CDS NA 1852621 1853979 - NA 1006 ydjF CDS COG1349 1854096 1854854 - [KG] Transcriptional regulators of sugar metabolism ydjG CDS COG0667 1854991 1855971 - [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) ydjH CDS COG0524 1855981 1856928 - [G] Sugar kinases, ribokinase family ydjI CDS COG0191 1856933 1857769 - [G] Fructose/tagatose bisphosphate aldolase ydjJ CDS COG1063 1857790 1858833 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases ydjK CDS COG1585 1858850 1860229 - [OU] Membrane protein implicated in regulation of ydjL CDS COG1063 1860256 1861332 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 1007 yeaC CDS COG3139 1861702 1861974 - [S] Uncharacterized protein conserved in bacteria msrB CDS COG0229 1862016 1862429 - [O] Conserved domain frequently associated with peptide 1008 gapA CDS COG0057 1862771 1863766 + [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase yeaD CDS COG0676 1863850 1864734 + [G] Uncharacterized enzymes related to aldose 1-epimerase 1009 yeaE CDS COG0667 1864782 1865636 - [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1010 mipA CDS COG3713 1865726 1866472 - [M] Outer membrane protein V 1011 yeaG CDS COG2766 1866908 1868842 + [T] Putative Ser protein kinase yeaH CDS COG2718 1868955 1870238 + [S] Uncharacterized conserved protein 1012 cdgI CDS COG3706 1870385 1871860 + [T] Response regulator containing a CheY-like receiver dgcJ CDS COG3706 1872041 1873531 + [T] Response regulator containing a CheY-like receiver yeaK CDS COG2606 1873574 1874077 + [S] Uncharacterized conserved protein 1013 yoaI CDS NA 1874078 1874182 - NA 1014 yeaL CDS COG2707 1874352 1874798 + [S] Predicted membrane protein 1015 nimR CDS COG2207 1874755 1875576 - [K] AraC-type DNA-binding domain-containing proteins 1016 nimT CDS COG2807 1875673 1876854 + [P] Cyanate permease yeaO CDS COG3189 1876909 1877256 + [S] Uncharacterized conserved protein 1017 yoaF CDS COG3042 1877278 1877532 - [R] Putative hemolysin 1018 dgcP CDS COG2199 1877715 1878740 + [T] FOG: GGDEF domain yoaK CDS NA 1878773 1878871 + NA yoaJ CDS COG4649 1878874 1878948 + [S] Uncharacterized protein conserved in bacteria 1019 yeaQ CDS COG2261 1879007 1879255 - [S] Predicted membrane protein 1020 yoaG CDS NA 1879403 1879585 - NA yeaR CDS COG3615 1879589 1879948 - [P] Uncharacterized protein/domain, possibly involved in tellurite 1021 leuE CDS COG1280 1880121 1880759 - [E] Putative threonine efflux protein dmlR CDS COG0583 1880886 1881809 - [K] Transcriptional regulator 1022 dmlA CDS COG0473 1881912 1882997 + [CE] Isocitrate/isopropylmalate dehydrogenase 1023 yeaV CDS COG1292 1883188 1884633 + [M] Choline-glycine betaine transporter yeaW CDS COG4638 1884665 1885789 + [PR] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, yeaX CDS COG1018 1885845 1886810 + [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 1024 rnd CDS COG0349 1886864 1887991 - [J] Ribonuclease D fadD CDS COG0318 1888061 1889746 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 1025 yeaY CDS COG3065 1889951 1890532 - [M] Starvation-inducible outer membrane lipoprotein tsaB CDS COG1214 1890572 1891267 - [O] Inactive homolog of metal-dependent proteases, putative yoaA CDS COG1199 1891325 1893235 - [KL] Rad3-related DNA helicases 1026 yoaB CDS COG0251 1893367 1893711 + [J] Putative translation initiation inhibitor, yjgF family 1027 yoaC CDS NA 1894133 1894432 + NA 1028 yoaH CDS COG3140 1894552 1894731 - [S] Uncharacterized protein conserved in bacteria 1029 pabB CDS COG0147 1894805 1896166 + [EH] Anthranilate/para-aminobenzoate synthases component I nudL CDS COG0494 1896170 1896748 + [LR] NTP pyrophosphohydrolases including oxidative damage repair 1030 sdaA CDS COG1760 1896932 1898296 + [E] L-serine deaminase 1031 pdeD CDS COG2200 1898427 1900025 + [T] FOG: EAL domain 1032 yoaE CDS COG0861 1900029 1901585 - [P] Membrane protein TerC, possibly involved in yoaL CDS NA 1901573 1901731 - NA 1033 manX CDS COG3444 1902048 1903019 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB manY CDS COG3715 1903082 1903882 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC manZ CDS COG3716 1903895 1904746 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID yobD CDS COG4811 1904801 1905259 + [S] Predicted membrane protein 1034 mntP CDS COG1971 1905688 1906254 + [S] Predicted membrane protein 1035 rlmA CDS COG0500 1906251 1907060 - [QR] SAM-dependent methyltransferases 1036 cspC CDS COG1278 1907226 1907435 - [K] Cold shock proteins yobF CDS NA 1907448 1907591 - NA 1037 yebO CDS ROG0210 1908261 1908548 - NA 1038 mgrB CDS NA 1908623 1908766 - NA 1039 yobH CDS ROG7461 1908925 1909164 + NA 1040 kdgR CDS COG1414 1909308 1910099 - [K] Transcriptional regulator 1041 yebQ CDS ROG2472 1910276 1911649 + NA 1042 htpX CDS COG0501 1911695 1912576 - [O] Zn-dependent protease with chaperone function 1043 prc CDS COG0793 1912768 1914816 - [M] Periplasmic protease proQ CDS COG3109 1914836 1915534 - [T] Activator of osmoprotectant transporter ProP msrC CDS COG1956 1915631 1916128 - [T] GAF domain-containing protein 1044 letA CDS COG2995 1916258 1917541 + [S] Uncharacterized paraquat-inducible protein A letB CDS COG3008 1917510 1920143 + [R] Paraquat-inducible protein B 1045 rsmF CDS COG0144 1920223 1921662 + [J] tRNA and rRNA cytosine-C5-methylases 1046 yebV CDS NA 1921780 1922016 + NA 1047 yebW CDS NA 1922121 1922312 + NA 1048 pphA CDS NA 1922313 1922969 - NA 1049 yebY CDS NA 1923365 1923706 - NA yebZ CDS COG1276 1923719 1924591 - [P] Putative copper export protein yobA CDS COG2372 1924595 1924969 - [R] Uncharacterized protein, homolog of Cu resistance 1050 holE CDS NA 1925108 1925338 + NA 1051 yobB CDS NA 1925440 1926096 + NA exoX CDS COG0847 1926120 1926782 + [L] DNA polymerase III, epsilon subunit and 1052 ptrB CDS COG1770 1926779 1928839 - [E] Protease II 1053 yebE CDS COG2979 1929048 1929707 - [S] Uncharacterized protein conserved in bacteria 1054 yebF CDS NA 1930034 1930390 - NA 1055 yebG CDS COG3141 1930457 1930747 - [S] Uncharacterized protein conserved in bacteria 1056 purT CDS COG0027 1930881 1932059 + [F] Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) 1057 eda CDS COG0800 1932115 1932756 - [G] 2-keto-3-deoxy-6-phosphogluconate aldolase edd CDS COG0129 1932793 1934604 - [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase zwf CDS COG0364 1934839 1936314 - [G] Glucose-6-phosphate 1-dehydrogenase 1058 yebK CDS COG1737 1936652 1937521 + [K] Transcriptional regulators 1059 pykA CDS COG0469 1937649 1939091 + [G] Pyruvate kinase 1060 lpxM CDS COG1560 1939222 1940193 - [M] Lauroyl/myristoyl acyltransferase 1061 mepM CDS COG0739 1940313 1941635 - [M] Membrane proteins related to metalloendopeptidases znuA CDS COG4531 1941651 1942583 - [P] ABC-type Zn2+ transport system, periplasmic component/surface 1062 znuC CDS COG1121 1942662 1943417 + [P] ABC-type Mn/Zn transport systems, ATPase component znuB CDS COG1108 1943414 1944199 + [P] ABC-type Mn2+/Zn2+ transport systems, permease components 1063 ruvB CDS COG2255 1944346 1945356 - [L] Holliday junction resolvasome, helicase subunit ruvA CDS COG0632 1945365 1945976 - [L] Holliday junction resolvasome, DNA-binding subunit 1064 yobI CDS NA 1946115 1946180 - NA 1065 yebB CDS ROG3369 1946251 1946853 + NA 1066 ruvC CDS COG0817 1946855 1947376 - [L] Holliday junction resolvasome, endonuclease subunit yebC CDS COG0217 1947411 1948151 - [S] Uncharacterized conserved protein nudB CDS COG1051 1948180 1948632 - [F] ADP-ribose pyrophosphatase 1067 aspS CDS COG0173 1948750 1950522 - [J] Aspartyl-tRNA synthetase 1068 yecD CDS COG1335 1950832 1951398 + [Q] Amidases related to nicotinamidase yecE CDS COG1801 1951395 1952213 + [S] Uncharacterized conserved protein yecN CDS COG3788 1952266 1952661 + [R] Uncharacterized relative of glutathione S-transferase, MAPEG cmoA CDS COG0500 1952702 1953445 + [QR] SAM-dependent methyltransferases cmoB CDS COG0500 1953442 1954413 + [QR] SAM-dependent methyltransferases 1069 torZ CDS COG0243 1954578 1957007 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing torY CDS COG3005 1957032 1958132 - [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c 1070 cutC CDS COG3142 1958520 1959266 - [P] Uncharacterized protein involved in copper resistance yecM CDS COG3102 1959280 1959846 - [S] Uncharacterized protein conserved in bacteria 1071 argS CDS COG0018 1960062 1961795 + [J] Arginyl-tRNA synthetase 1072 yecV CDS NA 1961837 1961881 - NA 1073 yecT CDS COG3755 1961972 1962460 + [S] Uncharacterized protein conserved in bacteria 1074 flhE CDS NA 1962580 1962972 - NA flhA CDS COG1298 1962972 1965050 - [NU] Flagellar biosynthesis pathway, component FlhA flhB CDS COG1377 1965043 1966191 - [NU] Flagellar biosynthesis pathway, component FlhB cheZ CDS COG3143 1966393 1967037 - [NT] Chemotaxis protein cheY CDS COG0784 1967048 1967437 - [T] FOG: CheY-like receiver cheB CDS COG2201 1967452 1968501 - [NT] Chemotaxis response regulator containing a CheY-like cheR CDS COG1352 1968504 1969364 - [NT] Methylase of chemotaxis methyl-accepting proteins tap CDS COG0840 1969383 1970984 - [NT] Methyl-accepting chemotaxis protein tar CDS COG0840 1971030 1972691 - [NT] Methyl-accepting chemotaxis protein cheW CDS COG0835 1972836 1973339 - [NT] Chemotaxis signal transduction protein cheA CDS COG0643 1973360 1975324 - [NT] Chemotaxis protein histidine kinase and related 1075 cheA_2 CDS COG0643 1973360 1975033 - [NT] Chemotaxis protein histidine kinase and related motB CDS COG1360 1975329 1976255 - [N] Flagellar motor protein motA CDS COG1291 1976252 1977139 - [N] Flagellar motor component 1076 flhC CDS ROG0388 1977266 1977844 - NA flhD CDS ROG0481 1977847 1978197 - NA 1077 insB5 CDS COG1662 1978518 1979021 - [L] Transposase and inactivated derivatives, IS1 family insA5 CDS COG3677 1978940 1979215 - [L] Transposase and inactivated derivatives 1078 uspC CDS COG0589 1979753 1980181 + [T] Universal stress protein UspA and related 1079 otsA CDS COG0380 1980188 1981612 - [G] Trehalose-6-phosphate synthase otsB CDS COG1877 1981587 1982387 - [G] Trehalose-6-phosphatase 1080 araH CDS COG1172 1982554 1983540 - [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components araG CDS COG1129 1983555 1985069 - [G] ABC-type sugar transport system, ATPase component araF CDS COG4213 1985139 1986128 - [G] ABC-type xylose transport system, periplasmic component 1081 ftnB CDS COG1528 1986925 1987428 + [P] Ferritin-like protein 1082 yecJ CDS NA 1987507 1987758 - NA 1083 azuC CDS NA 1987873 1987959 - NA 1084 yecR CDS NA 1988222 1988545 + NA 1085 ftnA CDS COG1528 1988716 1989213 + [P] Ferritin-like protein 1086 yecH CDS ROG7097 1989251 1989490 - NA 1087 tyrP CDS COG0814 1989681 1990892 + [E] Amino acid permeases 1088 yecA CDS COG3318 1990954 1991619 - [R] Predicted metal-binding protein related to the 1089 leuZ tRNA NA 1991815 1991901 - NA cysT tRNA NA 1991914 1991987 - NA glyW tRNA NA 1992042 1992117 - NA 1090 pgsA CDS COG0558 1992269 1992817 - [I] Phosphatidylglycerophosphate synthase uvrC CDS COG0322 1992874 1994706 - [L] Nuclease subunit of the excinuclease complex uvrY CDS COG2197 1994703 1995359 - [TK] Response regulator containing a CheY-like receiver 1091 yecU CDS NA 1995655 1995831 + NA yecF CDS NA 1995818 1996042 + NA 1092 sdiA CDS COG2771 1996110 1996832 - [K] DNA-binding HTH domain-containing proteins 1093 tcyN CDS COG1126 1997062 1997814 - [E] ABC-type polar amino acid transport system, tcyL CDS COG0765 1997811 1998479 - [E] ABC-type amino acid transport system, permease dcyD CDS COG2515 1998494 1999480 - [E] 1-aminocyclopropane-1-carboxylate deaminase 1094 tcyJ CDS COG0834 1999585 2000385 - [ET] ABC-type amino acid transport/signal transduction systems, 1095 fliZ CDS NA 2000473 2001024 - NA fliA CDS COG1191 2001070 2001789 - [K] DNA-directed RNA polymerase specialized sigma subunit fliC CDS COG1344 2002110 2003606 - [N] Flagellin and related hook-associated proteins 1096 fliD CDS COG1345 2003872 2005278 + [N] Flagellar capping protein fliS CDS COG1516 2005303 2005713 + [NUO] Flagellin-specific chaperone FliS fliT CDS ROG0925 2005713 2006078 + NA 1097 amyA CDS NA 2006156 2007643 + NA 1098 yedD CDS COG3056 2007677 2008090 - [M] Uncharacterized lipoprotein 1099 yedE CDS COG2391 2008277 2009482 + [R] Predicted transporter component yedF CDS COG0425 2009479 2009712 + [O] Predicted redox protein, regulator of disulfide 1100 yedK CDS COG2135 2009821 2010489 + [S] Uncharacterized conserved protein 1101 yedL CDS COG0454 2010600 2011079 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1102 fliE CDS COG1677 2012700 2013014 - [NU] Flagellar hook-basal body protein 1103 fliF CDS COG1766 2013229 2014887 + [NU] Flagellar biosynthesis/type III secretory pathway lipoprotein fliG CDS COG1536 2014880 2015875 + [N] Flagellar motor switch protein fliH CDS COG1317 2015868 2016554 + [NU] Flagellar biosynthesis/type III secretory pathway protein fliI CDS COG1157 2016554 2017927 + [NU] Flagellar biosynthesis/type III secretory pathway ATPase fliJ CDS COG2882 2017946 2018389 + [NUO] Flagellar biosynthesis chaperone fliK CDS COG3144 2018386 2019513 + [N] Flagellar hook-length control protein fliL CDS COG1580 2019618 2020082 + [N] Flagellar basal body-associated protein fliM CDS COG1868 2020087 2021091 + [N] Flagellar motor switch protein fliN CDS COG1886 2021088 2021501 + [NU] Flagellar motor switch/type III secretory pathway fliO CDS COG3190 2021504 2021869 + [N] Flagellar biogenesis protein fliP CDS COG1338 2021869 2022606 + [NU] Flagellar biosynthesis pathway, component FliP fliQ CDS COG1987 2022616 2022885 + [NU] Flagellar biosynthesis pathway, component FliQ fliR CDS COG1684 2022893 2023678 + [NU] Flagellar biosynthesis pathway, component FliR 1104 rcsA CDS NA 2023968 2024591 + NA 1105 dsrB CDS NA 2024635 2024823 - NA 1106 yodD CDS NA 2024986 2025213 + NA 1107 yedP CDS COG3769 2025511 2026326 + [R] Predicted hydrolase (HAD superfamily) 1108 dgcQ CDS COG2199 2026323 2028017 - [T] FOG: GGDEF domain 1109 yodC CDS COG5475 2028188 2028370 - [S] Uncharacterized small protein yedI CDS COG2354 2028449 2029366 - [S] Uncharacterized protein conserved in bacteria 1110 yedA CDS COG0697 2029539 2030459 + [GER] Permeases of the drug/metabolite transporter (DMT) 1111 vsr CDS COG3727 2030448 2030918 - [L] DNA G:T-mismatch repair endonuclease dcm CDS COG0270 2030899 2032317 - [L] Site-specific DNA methylase 1112 yedJ CDS COG1418 2032384 2033079 - [R] Predicted HD superfamily hydrolase drpB CDS NA 2033119 2033421 - NA 1113 hchA CDS COG0693 2035835 2036686 + [R] Putative intracellular protease/amidase 1114 hprS CDS COG2205 2036794 2038152 - [T] Osmosensitive K+ channel histidine kinase hprR CDS COG0745 2038152 2038823 - [TK] Response regulators consisting of a CheY-like 1115 hiuH CDS COG2351 2038956 2039369 + [R] Transthyretin-like protein msrP CDS COG2041 2039478 2040482 + [R] Sulfite oxidase and related enzymes msrQ CDS COG2717 2040483 2041118 + [S] Predicted membrane protein 1116 zinT CDS COG3443 2041375 2042025 + [R] Predicted periplasmic or secreted protein 1117 yodB CDS COG3038 2042368 2042898 + [C] Cytochrome B561 1118 serU tRNA NA 2043468 2043557 - NA 1119 mtfA CDS COG3228 2043651 2044448 + [S] Uncharacterized protein conserved in bacteria 1120 asnT tRNA NA 2044549 2044624 + NA 1121 yeeJ CDS ROG3089 2044938 2052014 + NA 1122 shiA CDS COG0477 2053643 2054959 + [GEPR] Permeases of the major facilitator superfamily 1123 amn CDS COG0775 2055061 2056515 + [F] Nucleoside phosphorylase 1124 yeeN CDS COG0217 2056858 2057574 + [S] Uncharacterized conserved protein 1125 asnW tRNA NA 2058027 2058102 - NA 1126 yeeO CDS COG0534 2058203 2059846 - [V] Na+-driven multidrug efflux pump 1127 asnU tRNA NA 2059851 2059926 + NA 1128 cbl CDS COG0583 2059964 2060914 - [K] Transcriptional regulator nac CDS COG0583 2061016 2061933 - [K] Transcriptional regulator 1129 asnV tRNA NA 2062260 2062335 + NA 1130 ldtA CDS COG1376 2062391 2063323 - [S] Uncharacterized protein conserved in bacteria cobT CDS COG2038 2063388 2064467 - [H] NaMN:DMB phosphoribosyltransferase cobS CDS COG0368 2064479 2065222 - [H] Cobalamin-5-phosphate synthase cobU CDS COG2087 2065219 2065764 - [H] Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase 1131 insH6 CDS COG3039 2066305 2067285 - [L] Transposase and inactivated derivatives, IS5 family 1132 yoeA CDS COG4206 2068635 2068940 + [H] Outer membrane cobalamin receptor protein 1133 yoeA_2 CDS COG1629 2070277 2070474 + [P] Outer membrane receptor proteins, mostly Fe 1134 insD3 CDS COG2801 2068952 2069857 - [L] Transposase and inactivated derivatives insC3 CDS COG2963 2069815 2070180 - [L] Transposase and inactivated derivatives 1135 flu CDS COG3468 2071539 2074658 + [MU] Type V secretory pathway, adhesin AidA 1136 yeeR CDS NA 2074779 2076311 + NA yeeS CDS COG2003 2076308 2076754 + [L] DNA repair proteins 1137 yeeT CDS NA 2076817 2077038 + NA 1138 cbeA CDS NA 2077112 2077480 + NA 1139 cbtA CDS NA 2077569 2077943 + NA yeeW CDS COG0403 2077940 2078134 + [E] Glycine cleavage system protein P (pyridoxal-binding), 1140 yoeF CDS COG4917 2078575 2078931 + [E] Ethanolamine utilization protein 1141 tmaR CDS COG2926 2079032 2079361 - [S] Uncharacterized protein conserved in bacteria 1142 yoeJ CDS NA 2079427 2079477 - NA yeeA CDS COG1289 2079533 2080591 - [S] Predicted membrane protein 1143 sbmC CDS COG3449 2080789 2081262 - [L] DNA gyrase inhibitor 1144 dacD CDS COG1686 2081381 2082547 - [M] D-alanyl-D-alanine carboxypeptidase 1145 sbcB CDS COG2925 2082756 2084183 + [L] Exonuclease I 1146 tsuB CDS COG0425 2084226 2084453 - [O] Predicted redox protein, regulator of disulfide tsuA CDS COG2391 2084467 2085525 - [R] Predicted transporter component 1147 plaP CDS COG0531 2085704 2087062 - [E] Amino acid transporters yoeI CDS NA 2087052 2087114 - NA 1148 yeeY CDS COG0583 2087329 2088258 - [K] Transcriptional regulator yeeZ CDS COG0451 2088304 2089128 - [MG] Nucleoside-diphosphate-sugar epimerases 1149 yoeB CDS COG4115 2089211 2089465 - [S] Uncharacterized protein conserved in bacteria yefM CDS COG2161 2089462 2089713 - [D] Antitoxin of toxin-antitoxin stability system 1150 hisL CDS NA 2089996 2090046 + NA 1151 hisG CDS COG0040 2090192 2091091 + [E] ATP phosphoribosyltransferase hisD CDS COG0141 2091097 2092401 + [E] Histidinol dehydrogenase hisC CDS COG0079 2092398 2093468 + [E] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase hisB CDS COG0131 2093468 2094535 + [E] Imidazoleglycerol-phosphate dehydratase hisH CDS COG0118 2094535 2095125 + [E] Glutamine amidotransferase hisA CDS COG0106 2095125 2095862 + [E] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase hisF CDS COG0107 2095844 2096620 + [E] Imidazoleglycerol-phosphate synthase hisI CDS COG0139 2096614 2097225 + [E] Phosphoribosyl-AMP cyclohydrolase 1152 wzzB CDS COG3765 2097321 2098301 - [M] Chain length determinant protein 1153 ugd CDS COG1004 2098447 2099613 - [M] Predicted UDP-glucose 6-dehydrogenase 1154 gnd CDS COG0362 2099862 2101268 - [G] 6-phosphogluconate dehydrogenase 1155 wbbL CDS COG1216 2102944 2103389 - [R] Predicted glycosyltransferases 1156 wbbL_2 CDS NA 2101396 2101744 - NA 1157 insH7 CDS COG3039 2101895 2102875 - [L] Transposase and inactivated derivatives, IS5 family 1158 wbbK CDS COG0438 2103391 2104509 - [M] Glycosyltransferase wbbJ CDS COG0110 2104494 2105084 - [R] Acetyltransferase (isoleucine patch superfamily) wbbI CDS ROG1116 2105065 2106057 - NA wbbH CDS COG4585 2106060 2107226 - [T] Signal transduction histidine kinase glf CDS COG0562 2107226 2108329 - [M] UDP-galactopyranose mutase rfbX CDS COG2244 2108337 2109584 - [R] Membrane protein involved in the export rfbC CDS COG1898 2109581 2110138 - [M] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes rfbA CDS COG1209 2110138 2111019 - [M] dTDP-glucose pyrophosphorylase rfbD CDS COG1091 2111077 2111976 - [M] dTDP-4-dehydrorhamnose reductase rfbB CDS COG1088 2111976 2113061 - [M] dTDP-D-glucose 4,6-dehydratase galF CDS COG1210 2113434 2114327 - [M] UDP-glucose pyrophosphorylase 1159 wcaM CDS NA 2114502 2115896 - NA wcaL CDS COG0438 2115907 2117127 - [M] Glycosyltransferase wcaK CDS COG2327 2117124 2118404 - [S] Uncharacterized conserved protein 1160 wzxC CDS COG2244 2118680 2120158 - [R] Membrane protein involved in the export wcaJ CDS COG2148 2120160 2121554 - [M] Sugar transferases involved in lipopolysaccharide synthesis cpsG CDS COG1109 2121609 2122979 - [G] Phosphomannomutase cpsB CDS COG0836 2123084 2124520 - [M] Mannose-1-phosphate guanylyltransferase wcaI CDS COG0438 2124523 2125746 - [M] Glycosyltransferase gmm CDS COG1051 2125743 2126222 - [F] ADP-ribose pyrophosphatase fcl CDS COG0451 2126225 2127190 - [MG] Nucleoside-diphosphate-sugar epimerases gmd CDS COG1089 2127193 2128314 - [M] GDP-D-mannose dehydratase wcaF CDS COG0110 2128340 2128888 - [R] Acetyltransferase (isoleucine patch superfamily) wcaE CDS COG1216 2128904 2129650 - [R] Predicted glycosyltransferases wcaD CDS NA 2129661 2130878 - NA wcaC CDS COG0438 2130853 2132070 - [M] Glycosyltransferase wcaB CDS COG1045 2132067 2132555 - [E] Serine acetyltransferase wcaA CDS COG0463 2132558 2133397 - [M] Glycosyltransferases involved in cell wall biogenesis wzc CDS COG3206 2133490 2135652 - [M] Uncharacterized protein involved in exopolysaccharide biosynthesis wzb CDS COG0394 2135655 2136098 - [T] Protein-tyrosine-phosphatase wza CDS COG1596 2136104 2137243 - [M] Periplasmic protein involved in polysaccharide export 1161 yegH CDS COG0861 2137902 2139485 + [P] Membrane protein TerC, possibly involved in 1162 asmA CDS COG2982 2139759 2141612 - [M] Uncharacterized protein involved in outer membrane dcd CDS COG0717 2141634 2142215 - [F] Deoxycytidine deaminase udk CDS COG0572 2142307 2142948 - [F] Uridine kinase 1163 dgcE CDS COG3447 2143266 2146583 + [T] Predicted integral membrane sensor domain 1164 alkA CDS COG0122 2146692 2147540 - [L] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 1165 yegD CDS COG0443 2147674 2149026 + [O] Molecular chaperone 1166 yegI CDS COG4248 2149039 2150985 - [R] Uncharacterized protein with protein kinase and 1167 yegJ CDS COG3779 2151185 2151646 + [S] Uncharacterized protein conserved in bacteria 1168 pphC CDS ROG2884 2151711 2152472 - NA yegL CDS COG4245 2152469 2153128 - [R] Uncharacterized protein encoded in toxicity protection 1169 ibsA CDS NA 2153349 2153408 - NA 1170 ibsB CDS NA 2153681 2153737 - NA 1171 mdtA CDS COG0845 2154016 2155263 + [M] Membrane-fusion protein mdtB CDS COG0841 2155263 2158385 + [V] Cation/multidrug efflux pump mdtC CDS COG0841 2158386 2161463 + [V] Cation/multidrug efflux pump mdtD CDS COG0477 2161464 2162879 + [GEPR] Permeases of the major facilitator superfamily baeS CDS COG0642 2162876 2164279 + [T] Signal transduction histidine kinase baeR CDS COG0745 2164276 2164998 + [TK] Response regulators consisting of a CheY-like 1172 yegP CDS COG3422 2165189 2165521 + [S] Uncharacterized conserved protein 1173 trhP CDS COG0826 2165668 2167029 + [O] Collagenase and related proteases 1174 ogrK CDS ROG4411 2167302 2167520 - NA 1175 yegR CDS NA 2167989 2168306 - NA 1176 yegS CDS COG1597 2168712 2169611 + [IR] Sphingosine kinase and enzymes related to 1177 gatR CDS COG1349 2171429 2171727 - [KG] Transcriptional regulators of sugar metabolism 1178 gatR_2 CDS NA 2169693 2170167 - NA 1179 insE5 CDS COG2963 2170236 2170535 + [L] Transposase and inactivated derivatives insF5 CDS COG2801 2170532 2171398 + [L] Transposase and inactivated derivatives 1180 gatD CDS COG1063 2171833 2172873 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 1181 gatB CDS COG3414 2174282 2174566 - [G] Phosphotransferase system, galactitol-specific IIB component gatA CDS COG1762 2174597 2175049 - [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) gatZ CDS COG4573 2175059 2176321 - [G] Predicted tagatose 6-phosphate kinase gatY CDS COG0191 2176350 2177204 - [G] Fructose/tagatose bisphosphate aldolase fbaB CDS COG1830 2177512 2178564 - [G] DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes 1182 yegT CDS NA 2178821 2180098 + NA yegU CDS COG1397 2180095 2181099 + [O] ADP-ribosylglycohydrolase yegV CDS COG0524 2181096 2182061 + [G] Sugar kinases, ribokinase family 1183 yegW CDS COG2188 2182035 2182781 - [K] Transcriptional regulators yegX CDS COG3757 2182833 2183651 - [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 1184 thiD CDS COG0351 2183716 2184516 - [H] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase thiM CDS COG2145 2184513 2185301 - [H] Hydroxyethylthiazole kinase, sugar kinase family 1185 rcnR CDS COG1937 2185524 2185796 - [S] Uncharacterized protein conserved in bacteria 1186 rcnA CDS COG2215 2185917 2186741 + [R] ABC-type uncharacterized transport system, permease component 1187 rcnB CDS COG5455 2186960 2187298 + [S] Predicted integral membrane protein 1188 yehA CDS NA 2187380 2188414 - NA yehB CDS COG3188 2188430 2190910 - [NU] P pilus assembly protein, porin PapC yehC CDS COG3121 2190926 2191645 - [NU] P pilus assembly protein, chaperone PapD yehD CDS COG3539 2191680 2192222 - [NU] P pilus assembly protein, pilin FimA yehE CDS COG3539 2192515 2192796 - [NU] P pilus assembly protein, pilin FimA 1189 mrp CDS COG0489 2193059 2194168 - [D] ATPases involved in chromosome partitioning 1190 metG CDS COG0143 2194300 2196333 + [J] Methionyl-tRNA synthetase 1191 yehF CDS COG3831 2196474 2197298 + [S] Uncharacterized conserved protein 1192 yehI CDS ROG5968 2200279 2203911 + NA yehK CDS NA 2203972 2204289 + NA 1193 yehL CDS COG1401 2204596 2205684 + [V] GTPase subunit of restriction endonuclease yehM CDS ROG0128 2205695 2207974 + NA yehP CDS ROG0128 2207967 2209103 + NA yehQ CDS NA 2209100 2210944 + NA 1194 yehR CDS COG4808 2211225 2211686 + [S] Uncharacterized protein conserved in bacteria 1195 yehS CDS COG4807 2211726 2212196 - [S] Uncharacterized protein conserved in bacteria btsR CDS COG3279 2212243 2212962 - [KT] Response regulator of the LytR/AlgR family btsS CDS COG3275 2212959 2214644 - [T] Putative regulator of cell autolysis 1196 mlrA CDS COG2452 2214866 2215597 + [L] Predicted site-specific integrase-resolvase yohO CDS NA 2215657 2215764 + NA 1197 yehW CDS COG1174 2215745 2216476 - [E] ABC-type proline/glycine betaine transport systems, permease yehX CDS COG1125 2216481 2217407 - [E] ABC-type proline/glycine betaine transport systems, ATPase yehY CDS COG1174 2217400 2218557 - [E] ABC-type proline/glycine betaine transport systems, permease osmF CDS COG1732 2218564 2219481 - [M] Periplasmic glycine betaine/choline-binding (lipo)protein of an 1198 bglX CDS COG1472 2219692 2221989 - [G] Beta-glucosidase-related glycosidases 1199 dld CDS COG0277 2222185 2223900 + [C] FAD/FMN-containing dehydrogenases 1200 pbpG CDS COG1686 2223938 2224870 - [M] D-alanyl-D-alanine carboxypeptidase 1201 yohC CDS ROG0339 2225044 2225631 - NA 1202 yohD CDS COG0586 2225801 2226379 + [S] Uncharacterized membrane-associated protein 1203 yohF CDS COG1028 2226509 2227270 - [IQR] Dehydrogenases with different specificities (related to 1204 yohP CDS NA 2228982 2229065 + NA 1205 dusC CDS COG0042 2229438 2230385 - [J] tRNA-dihydrouridine synthase 1206 yohJ CDS COG1380 2230624 2231022 + [R] Putative effector of murein hydrolase LrgA yohK CDS COG1346 2231019 2231714 + [M] Putative effector of murein hydrolase 1207 cdd CDS COG0295 2231844 2232728 + [F] Cytidine deaminase 1208 sanA CDS COG2949 2232878 2233597 + [S] Uncharacterized membrane protein yeiS CDS NA 2233600 2233839 + NA 1209 preT CDS COG0493 2234033 2235271 + [ER] NADPH-dependent glutamate synthase beta chain and preA CDS COG0167 2235265 2236500 + [F] Dihydroorotate dehydrogenase 1210 mglC CDS COG4211 2236743 2237753 - [G] ABC-type glucose/galactose transport system, permease component mglA CDS COG1129 2237769 2239289 - [G] ABC-type sugar transport system, ATPase component mglB CDS COG1879 2239350 2240348 - [G] ABC-type sugar transport system, periplasmic component galS CDS COG1609 2240628 2241668 - [K] Transcriptional regulators 1211 yeiB CDS COG2311 2241810 2242967 - [S] Predicted membrane protein folE CDS COG0302 2242984 2243652 - [H] GTP cyclohydrolase I 1212 yeiG CDS COG0627 2243910 2244746 + [R] Predicted esterase 1213 cirA CDS COG4771 2244778 2246769 - [P] Outer membrane receptor for ferrienterochelin and 1214 lysP CDS COG0833 2247063 2248532 - [E] Amino acid transporters 1215 yeiE CDS COG0583 2248737 2249618 - [K] Transcriptional regulator 1216 yeiH CDS COG2855 2249717 2250766 + [S] Predicted membrane protein 1217 nfo CDS COG0648 2250840 2251697 + [L] Endonuclease IV yeiI CDS COG0524 2251700 2252788 + [G] Sugar kinases, ribokinase family 1218 nupX CDS COG1972 2252895 2254145 - [F] Nucleoside permease rihB CDS COG1957 2254245 2255186 - [F] Inosine-uridine nucleoside N-ribohydrolase 1219 yeiL CDS COG0664 2255355 2256014 + [T] cAMP-binding proteins - catabolite gene activator 1220 psuT CDS COG1972 2256085 2257335 - [F] Nucleoside permease psuG CDS COG2313 2257429 2258367 - [Q] Uncharacterized enzyme involved in pigment biosynthesis psuK CDS COG0524 2258355 2259296 - [G] Sugar kinases, ribokinase family 1221 fruA CDS COG1299 2259719 2261410 - [G] Phosphotransferase system, fructose-specific IIC component fruK CDS COG1105 2261427 2262365 - [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase fruB CDS COG4668 2262365 2263495 - [G] Mannitol/fructose-specific phosphotransferase system, IIA domain 1222 setB CDS COG3619 2263863 2265044 + [S] Predicted membrane protein 1223 yeiW CDS COG0727 2265041 2265295 - [R] Predicted Fe-S-cluster oxidoreductase 1224 yeiP CDS COG0231 2265450 2266022 + [J] Translation elongation factor P (EF-P)/translation initiation 1225 yeiQ CDS COG0246 2266245 2267711 + [G] Mannitol-1-phosphate/altronate dehydrogenases 1226 yeiR CDS COG0523 2267829 2268815 + [R] Putative GTPases (G3E family) lpxT CDS ROG3410 2268854 2269567 + NA 1227 mepS CDS COG0791 2269979 2270545 + [M] Cell wall-associated hydrolases (invasion-associated proteins) 1228 pdeN CDS COG2200 2270726 2272282 + [T] FOG: EAL domain 1229 yejA CDS COG0747 2272364 2274178 + [E] ABC-type dipeptide transport system, periplasmic component yejB CDS COG4174 2274179 2275273 + [R] ABC-type uncharacterized transport system, permease component yejE CDS COG4239 2275273 2276298 + [R] ABC-type uncharacterized transport system, permease component yejF CDS COG4172 2276300 2277889 + [R] ABC-type uncharacterized transport system, duplicated ATPase 1230 yejG CDS NA 2277893 2278237 - NA 1231 bcr CDS COG2814 2278570 2279760 - [G] Arabinose efflux permease rsuA CDS COG1187 2279788 2280483 - [J] 16S rRNA uridine-516 pseudouridylate synthase and 1232 radD CDS COG1061 2280632 2282392 + [KL] DNA or RNA helicases of superfamily 1233 rplY CDS COG1825 2282517 2282801 + [J] Ribosomal protein L25 (general stress protein 1234 yejK CDS COG3081 2282940 2283947 - [R] Nucleoid-associated protein 1235 yejL CDS COG3082 2284129 2284356 + [S] Uncharacterized protein conserved in bacteria lapC CDS COG3083 2284376 2286136 + [R] Predicted hydrolase of alkaline phosphatase superfamily 1236 proL tRNA NA 2286211 2286287 + NA 1237 yejO CDS NA 2290114 2290180 - NA 1238 yejO_2 CDS NA 2286390 2288914 - NA 1239 insH8 CDS COG3039 2289065 2290045 - [L] Transposase and inactivated derivatives, IS5 family 1240 narP CDS COG2197 2290500 2291147 + [TK] Response regulator containing a CheY-like receiver 1241 ccmH CDS COG3088 2291358 2292410 - [O] Uncharacterized protein involved in biosynthesis of ccmG CDS COG0526 2292407 2292964 - [OC] Thiol-disulfide isomerase and thioredoxins ccmF CDS COG1138 2292961 2294904 - [O] Cytochrome c biogenesis factor ccmE CDS COG2332 2294901 2295380 - [O] Cytochrome c-type biogenesis protein CcmE ccmD CDS COG3114 2295377 2295586 - [U] Heme exporter protein D ccmC CDS COG0755 2295583 2296320 - [O] ABC-type transport system involved in cytochrome ccmB CDS COG2386 2296362 2297024 - [O] ABC-type transport system involved in cytochrome ccmA CDS COG4133 2297021 2297644 - [O] ABC-type transport system involved in cytochrome napC CDS COG3005 2297657 2298259 - [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c napB CDS COG3043 2298269 2298718 - [C] Nitrate reductase cytochrome c-type subunit napH CDS COG0348 2298715 2299578 - [C] Polyferredoxin napG CDS COG1145 2299565 2300260 - [C] Ferredoxin napA CDS COG0243 2300267 2302753 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing napD CDS COG3062 2302750 2303013 - [P] Uncharacterized protein involved in formation of napF CDS COG1145 2303003 2303497 - [C] Ferredoxin 1242 yojO CDS NA 2303606 2303770 + NA 1243 eco CDS COG4574 2303905 2304393 + [R] Serine protease inhibitor ecotin 1244 mqo CDS COG0579 2305108 2306754 - [R] Predicted dehydrogenase 1245 yojI CDS COG4615 2306972 2308615 - [QP] ABC-type siderophore export system, fused ATPase alkB CDS COG3145 2308691 2309341 - [L] Alkylated DNA repair protein ada CDS COG2169 2309341 2310405 - [F] Adenosine deaminase 1246 ftp CDS COG1477 2310479 2311534 - [H] Membrane-associated lipoprotein involved in thiamine biosynthesis 1247 ompC CDS COG3203 2311646 2312749 - [M] Outer membrane protein (porin) 1248 rcsD CDS COG2198 2313488 2316160 + [T] FOG: HPt domain rcsB CDS COG2197 2316177 2316827 + [TK] Response regulator containing a CheY-like receiver 1249 rcsC CDS COG0642 2317027 2319876 - [T] Signal transduction histidine kinase 1250 atoS CDS COG4191 2320043 2321869 + [T] Signal transduction histidine kinase regulating C4-dicarboxylate atoC CDS COG2204 2321866 2323251 + [T] Response regulator containing CheY-like receiver, AAA-type 1251 atoD CDS COG1788 2323447 2324109 + [I] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit atoA CDS COG2057 2324109 2324759 + [I] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit atoE CDS COG2031 2324756 2326078 + [I] Short chain fatty acids transporter atoB CDS COG0183 2326109 2327293 + [I] Acetyl-CoA acetyltransferase 1252 yfaP CDS COG4676 2327367 2328143 - [S] Uncharacterized protein conserved in bacteria yfaQ CDS COG5445 2328148 2329797 - [S] Predicted secreted protein 1253 yfaT CDS COG3234 2334336 2334959 - [S] Uncharacterized protein conserved in bacteria yfaA CDS COG4685 2334956 2336644 - [S] Uncharacterized protein conserved in bacteria 1254 gyrA CDS COG0188 2336793 2339420 - [L] Type IIA topoisomerase (DNA gyrase/topo II, 1255 ubiG CDS COG2227 2339567 2340289 + [H] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 1256 yfaL CDS COG3468 2340417 2344169 - [MU] Type V secretory pathway, adhesin AidA 1257 ypaB CDS NA 2344594 2344737 - NA 1258 nrdA CDS COG0209 2344865 2347150 + [F] Ribonucleotide reductase, alpha subunit 1259 yoaM CDS NA 2347350 2347385 - NA 1260 nrdB CDS COG0208 2347384 2348514 + [F] Ribonucleotide reductase, beta subunit yfaE CDS COG0633 2348514 2348768 + [C] Ferredoxin 1261 inaA CDS ROG4187 2348822 2349472 - NA 1262 glpQ CDS COG0584 2349935 2351011 - [C] Glycerophosphoryl diester phosphodiesterase glpT CDS COG2271 2351016 2352374 - [G] Sugar phosphate permease 1263 glpA CDS COG0578 2352647 2354275 + [C] Glycerol-3-phosphate dehydrogenase glpB CDS COG3075 2354265 2355524 + [E] Anaerobic glycerol-3-phosphate dehydrogenase glpC CDS COG0247 2355521 2356711 + [C] Fe-S oxidoreductase 1264 rpnE CDS COG5464 2356904 2357803 + [S] Uncharacterized conserved protein 1265 yfaU CDS COG3836 2358042 2358845 - [G] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase yfaV CDS COG3247 2358863 2360152 - [S] Uncharacterized conserved protein rhmD CDS COG4948 2360209 2361414 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of yfaX CDS COG1414 2361429 2362211 - [K] Transcriptional regulator 1266 yfaY CDS COG1058 2362431 2363633 - [R] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis 1267 yfaZ CDS ROG1990 2363733 2364275 - NA 1268 nudI CDS COG1051 2364554 2364979 + [F] ADP-ribose pyrophosphatase 1269 ais CDS ROG3466 2365018 2365620 - NA 1270 arnB CDS COG0399 2365910 2367067 + [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved arnC CDS COG0463 2367071 2368039 + [M] Glycosyltransferases involved in cell wall biogenesis arnA CDS COG0223 2368039 2370021 + [J] Methionyl-tRNA formyltransferase arnD CDS COG0726 2370018 2370908 + [G] Predicted xylanase/chitin deacetylase arnT CDS COG1807 2370908 2372560 + [M] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of arnE CDS COG0697 2372557 2372892 + [GER] Permeases of the drug/metabolite transporter (DMT) arnF CDS NA 2372892 2373278 + NA 1271 pmrD CDS NA 2373272 2373538 - NA 1272 menE CDS COG0318 2373648 2375003 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II menC CDS COG1441 2375000 2375962 - [H] O-succinylbenzoate synthase menB CDS COG0447 2375962 2376819 - [H] Dihydroxynaphthoic acid synthase menH CDS COG0596 2376834 2377592 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase menD CDS COG1165 2377589 2379259 - [H] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase menF CDS COG1169 2379348 2380643 - [HQ] Isochorismate synthase 1273 elaB CDS COG4575 2380722 2381027 - [S] Uncharacterized conserved protein elaA CDS COG2153 2381082 2381543 - [R] Predicted acyltransferase 1274 rbn CDS COG1234 2381608 2382525 + [R] Metal-dependent hydrolases of the beta-lactamase superfamily 1275 elaD CDS NA 2382713 2383924 + NA 1276 yfbK CDS COG2304 2383995 2385722 - [R] Uncharacterized protein containing a von Willebrand 1277 yfbL CDS COG2234 2385860 2386831 + [R] Predicted aminopeptidases 1278 yfbM CDS ROG5086 2386934 2387437 + NA 1279 yfbN CDS ROG0383 2387710 2388426 - NA 1280 yfbO CDS NA 2388635 2389057 + NA yfbP CDS COG0457 2389116 2389964 + [R] FOG: TPR repeat 1281 nuoN CDS COG1007 2390048 2391505 - [C] NADH:ubiquinone oxidoreductase subunit 2 (chain N) nuoM CDS COG1008 2391512 2393041 - [C] NADH:ubiquinone oxidoreductase subunit 4 (chain M) nuoL CDS COG1009 2393205 2395046 - [CP] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit nuoK CDS COG0713 2395043 2395345 - [C] NADH:ubiquinone oxidoreductase subunit 11 or 4L nuoJ CDS COG0839 2395342 2395896 - [C] NADH:ubiquinone oxidoreductase subunit 6 (chain J) nuoI CDS COG1143 2395908 2396450 - [C] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 nuoH CDS COG1005 2396465 2397442 - [C] NADH:ubiquinone oxidoreductase subunit 1 (chain H) nuoG CDS COG1034 2397439 2400165 - [C] NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit nuoF CDS COG1894 2400218 2401555 - [C] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit nuoE CDS COG1905 2401552 2402052 - [C] NADH:ubiquinone oxidoreductase 24 kD subunit nuoC CDS COG0649 2402055 2403845 - [C] NADH:ubiquinone oxidoreductase 49 kD subunit 7 nuoB CDS COG0377 2403951 2404613 - [C] NADH:ubiquinone oxidoreductase 20 kD subunit and nuoA CDS COG0838 2404629 2405072 - [C] NADH:ubiquinone oxidoreductase subunit 3 (chain A) 1282 lrhA CDS COG0583 2405703 2406641 - [K] Transcriptional regulator 1283 alaA CDS COG0436 2407561 2408778 + [E] Aspartate/tyrosine/aromatic aminotransferase yfbR CDS COG1896 2408862 2409461 + [R] Predicted hydrolases of HD superfamily 1284 yfbS CDS COG0471 2409520 2411352 - [P] Di- and tricarboxylate transporters 1285 hxpA CDS COG0637 2411439 2412089 - [R] Predicted phosphatase/phosphohexomutase yfbU CDS COG3013 2412100 2412594 - [S] Uncharacterized conserved protein yfbV CDS COG3092 2412677 2413132 - [S] Uncharacterized protein conserved in bacteria 1286 ackA CDS COG0282 2413470 2414672 + [C] Acetate kinase pta CDS COG0280 2414747 2416891 + [C] Phosphotransacetylase 1287 yfcC CDS COG1288 2417081 2418601 + [S] Predicted membrane protein 1288 yfcD CDS COG0494 2418634 2419176 - [LR] NTP pyrophosphohydrolases including oxidative damage repair yfcE CDS COG0622 2419234 2419788 - [R] Predicted phosphoesterase 1289 yfcF CDS COG0625 2419841 2420485 - [O] Glutathione S-transferase 1290 yfcG CDS COG0625 2420621 2421268 + [O] Glutathione S-transferase folX CDS COG1539 2421325 2421687 + [H] Dihydroneopterin aldolase yfcH CDS COG1090 2421708 2422601 + [R] Predicted nucleoside-diphosphate sugar epimerase 1291 rpnB CDS COG5464 2422649 2423539 - [S] Uncharacterized conserved protein 1292 hisP CDS COG4598 2423736 2424509 - [E] ABC-type histidine transport system, ATPase component hisM CDS COG4160 2424517 2425233 - [E] ABC-type arginine/histidine transport system, permease component hisQ CDS COG4215 2425230 2425916 - [E] ABC-type arginine transport system, permease component hisJ CDS COG0834 2426006 2426788 - [ET] ABC-type amino acid transport/signal transduction systems, argT CDS COG0834 2427009 2427791 - [ET] ABC-type amino acid transport/signal transduction systems, 1293 ubiX CDS COG0163 2428057 2428626 - [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase purF CDS COG0034 2428721 2430238 - [F] Glutamine phosphoribosylpyrophosphate amidotransferase cvpA CDS COG1286 2430275 2430763 - [R] Uncharacterized membrane protein, required for colicin 1294 dedD CDS COG3147 2431022 2431684 - [S] Uncharacterized protein conserved in bacteria folC CDS COG0285 2431674 2432942 - [H] Folylpolyglutamate synthase accD CDS COG0777 2433012 2433926 - [I] Acetyl-CoA carboxylase beta subunit 1295 dedA CDS COG0586 2434082 2434741 - [S] Uncharacterized membrane-associated protein truA CDS COG0101 2434824 2435636 - [J] Pseudouridylate synthase usg CDS COG0136 2435636 2436649 - [E] Aspartate-semialdehyde dehydrogenase pdxB CDS COG0111 2436715 2437851 - [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 1296 flk CDS NA 2437950 2438945 + NA 1297 yfcJ CDS NA 2438942 2440120 - NA 1298 fabB CDS COG0304 2440385 2441605 - [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase 1299 mnmC CDS COG4121 2441764 2443770 + [S] Uncharacterized conserved protein 1300 yfcL CDS ROG4992 2443891 2444169 - NA epmC CDS COG3101 2444203 2444751 - [S] Uncharacterized protein conserved in bacteria yfcA CDS COG0730 2444751 2445560 - [R] Predicted permeases mepA CDS COG3770 2445560 2446384 - [M] Murein endopeptidase aroC CDS COG0082 2446388 2447473 - [E] Chorismate synthase prmB CDS COG2890 2447508 2448440 - [J] Methylase of polypeptide chain release factors 1301 smrB CDS COG2840 2448606 2449157 + [S] Uncharacterized protein conserved in bacteria 1302 yfcO CDS NA 2449228 2450049 - NA yfcP CDS COG3539 2450051 2450590 - [NU] P pilus assembly protein, pilin FimA yfcQ CDS COG3539 2450587 2451075 - [NU] P pilus assembly protein, pilin FimA yfcR CDS COG3539 2451072 2451584 - [NU] P pilus assembly protein, pilin FimA yfcS CDS COG3121 2451584 2452336 - [NU] P pilus assembly protein, chaperone PapD 1303 yfcV CDS COG3539 2455083 2455646 - [NU] P pilus assembly protein, pilin FimA 1304 sixA CDS COG2062 2456327 2456812 - [T] Phosphohistidine phosphatase SixA 1305 fadJ CDS COG1250 2457015 2459159 - [I] 3-hydroxyacyl-CoA dehydrogenase fadI CDS COG0183 2459159 2460469 - [I] Acetyl-CoA acetyltransferase 1306 yfcZ CDS COG3691 2460650 2460934 - [S] Uncharacterized protein conserved in bacteria 1307 fadL CDS COG2067 2461306 2462646 + [I] Long-chain fatty acid transport protein 1308 yfdF CDS NA 2463012 2464070 + NA 1309 mlaA CDS COG2853 2464252 2465007 - [M] Surface lipoprotein 1310 yfdC CDS COG2116 2465301 2466233 + [P] Formate/nitrite family of transporters 1311 argW tRNA NA 2466309 2466383 + NA 1312 intS CDS COG0582 2466545 2467702 + [L] Integrase 1313 yfdG CDS COG2246 2467855 2468217 + [S] Predicted membrane protein yfdH CDS COG0463 2468214 2469134 + [M] Glycosyltransferases involved in cell wall biogenesis yfdI CDS ROG1883 2469131 2470462 + NA 1314 yodE CDS NA 2470497 2470643 - NA 1315 yfdK CDS ROG5293 2471077 2471517 - NA 1316 yfdM CDS NA 2472112 2472387 - NA yfdN CDS ROG5267 2472387 2472881 - NA yfdO CDS NA 2472878 2473246 - NA 1317 yfdP CDS NA 2473604 2473966 + NA 1318 yfdQ CDS COG5532 2474032 2474856 + [S] Uncharacterized conserved protein 1319 yfdR CDS COG1896 2474984 2475520 + [R] Predicted hydrolases of HD superfamily yfdS CDS NA 2475511 2475873 + NA yfdT CDS NA 2475873 2476178 + NA ypdJ CDS NA 2476094 2476234 + NA 1320 torI CDS COG3311 2476310 2476510 + [K] Predicted transcriptional regulator 1321 dsdC CDS COG0583 2476694 2477629 - [K] Transcriptional regulator 1322 dsdX CDS COG2610 2477847 2479184 + [GE] H+/gluconate symporter and related permeases dsdA CDS COG3048 2479202 2480530 + [E] D-serine dehydratase 1323 emrY CDS NA 2480638 2482176 - NA emrK CDS COG1566 2482176 2483339 - [V] Multidrug resistance efflux pump 1324 evgL CDS NA 2483729 2483758 + NA evgA CDS COG2197 2483755 2484369 + [TK] Response regulator containing a CheY-like receiver evgS CDS COG0642 2484374 2487967 + [T] Signal transduction histidine kinase 1325 yfdE CDS COG1804 2488023 2489168 - [C] Predicted acyl-CoA transferases/carnitine dehydratase yfdV CDS COG0679 2489242 2490186 - [R] Predicted permeases 1326 oxc CDS COG3960 2490256 2491950 - [R] Glyoxylate carboligase frc CDS COG1804 2492004 2493254 - [C] Predicted acyl-CoA transferases/carnitine dehydratase 1327 yfdX CDS ROG1668 2493767 2494402 - NA 1328 ypdI CDS NA 2494698 2494973 + NA 1329 yfdY CDS COG3856 2495050 2495292 - [S] Uncharacterized conserved protein (small basic protein) 1330 lpxP CDS COG1560 2495645 2496565 + [M] Lauroyl/myristoyl acyltransferase 1331 ypdK CDS NA 2496921 2496992 + NA 1332 alaC CDS COG0436 2497057 2498295 - [E] Aspartate/tyrosine/aromatic aminotransferase 1333 pyrS CDS COG3275 2498671 2500368 + [T] Putative regulator of cell autolysis pyrR CDS COG3279 2500383 2501117 + [KT] Response regulator of the LytR/AlgR family ypdC CDS COG2207 2501130 2501987 + [K] AraC-type DNA-binding domain-containing proteins 1334 fryA CDS COG1080 2501990 2504485 - [G] Phosphoenolpyruvate-protein kinase (PTS system EI component ypdE CDS COG1363 2504510 2505547 - [G] Cellulase M and related proteins ypdF CDS COG0006 2505547 2506632 - [E] Xaa-Pro aminopeptidase fryC CDS COG1299 2506647 2507894 - [G] Phosphotransferase system, fructose-specific IIC component fryB CDS COG1445 2507916 2508242 - [G] Phosphotransferase system fructose-specific component IIB 1335 glk CDS COG0837 2508461 2509426 - [G] Glucokinase 1336 yfeO CDS ROG4630 2509630 2510886 + NA 1337 ypeC CDS ROG0756 2511001 2511327 + NA 1338 mntH CDS COG1914 2511468 2512706 - [P] Mn2+ and Fe2+ transporters of the ypeD CDS NA 2512687 2512776 - NA 1339 nupC CDS COG1972 2513042 2514244 + [F] Nucleoside permease 1340 insL3 CDS COG3385 2514331 2515443 + [L] FOG: Transposase and inactivated derivatives 1341 pdeA CDS COG2200 2515643 2517832 - [T] FOG: EAL domain 1342 alaX tRNA NA 2518041 2518116 - NA alaW tRNA NA 2518156 2518231 - NA 1343 yfeC CDS ROG3866 2518467 2518811 + NA yfeD CDS COG1476 2518813 2519205 + [K] Predicted transcriptional regulators 1344 gltX CDS COG0008 2519257 2520672 - [J] Glutamyl- and glutaminyl-tRNA synthetases 1345 valU tRNA NA 2520931 2521006 + NA valX tRNA NA 2521051 2521126 + NA valY tRNA NA 2521173 2521248 + NA lysV tRNA NA 2521253 2521328 + NA 1346 xapR CDS COG0583 2521593 2522477 - [K] Transcriptional regulator 1347 xapB CDS NA 2522729 2523985 - NA xapA CDS COG0005 2524045 2524878 - [F] Purine nucleoside phosphorylase 1348 yfeN CDS ROG0103 2525127 2525891 + NA 1349 yfeR CDS COG0583 2525930 2526856 - [K] Transcriptional regulator 1350 yfeH CDS COG0385 2526946 2527944 + [R] Predicted Na+-dependent transporter 1351 ypeB CDS COG3530 2527941 2528159 - [S] Uncharacterized protein conserved in bacteria ligA CDS COG0272 2528161 2530176 - [L] NAD-dependent DNA ligase (contains BRCT domain zipA CDS COG3115 2530247 2531233 - [D] Cell division protein 1352 cysZ CDS COG2981 2531463 2532224 + [E] Uncharacterized protein involved in cysteine biosynthesis 1353 cysK CDS COG0031 2532409 2533380 + [E] Cysteine synthase 1354 ptsH CDS COG1925 2533764 2534021 + [G] Phosphotransferase system, HPr-related proteins ptsI CDS COG1080 2534066 2535793 + [G] Phosphoenolpyruvate-protein kinase (PTS system EI component crr CDS COG2190 2535834 2536343 + [G] Phosphotransferase system IIA components 1355 pdxK CDS COG2240 2536386 2537237 - [H] Pyridoxal/pyridoxine/pyridoxamine kinase 1356 yfeK CDS COG0173 2537342 2537716 + [J] Aspartyl-tRNA synthetase yfeS CDS COG4884 2537749 2538483 + [S] Uncharacterized protein conserved in bacteria 1357 cysM CDS COG0031 2538672 2539583 - [E] Cysteine synthase cysA CDS COG1118 2539717 2540814 - [P] ABC-type sulfate/molybdate transport systems, ATPase component cysW CDS COG4208 2540804 2541679 - [P] ABC-type sulfate transport system, permease component cysU CDS COG0555 2541679 2542512 - [O] ABC-type sulfate transport system, permease component cysP CDS COG4150 2542512 2543528 - [P] ABC-type sulfate transport system, periplasmic component 1358 ucpA CDS COG1028 2543832 2544623 - [IQR] Dehydrogenases with different specificities (related to murR CDS COG1737 2544752 2545609 - [K] Transcriptional regulators 1359 murQ CDS COG2103 2545773 2546669 + [R] Predicted sugar phosphate isomerase murP CDS COG1264 2546673 2548097 + [G] Phosphotransferase system IIB components yfeW CDS COG1680 2548102 2549406 + [V] Beta-lactamase class C and other penicillin 1360 yfeX CDS COG2837 2549646 2550545 - [P] Predicted iron-dependent peroxidase 1361 yfeY CDS NA 2550641 2551216 - NA yfeZ CDS ROG4313 2551277 2551726 - NA ypeA CDS COG0454 2551713 2552138 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1362 amiA CDS COG0860 2552352 2553221 + [M] N-acetylmuramoyl-L-alanine amidase hemF CDS COG0408 2553225 2554124 + [H] Coproporphyrinogen III oxidase 1363 eutR CDS COG2207 2554130 2555182 - [K] AraC-type DNA-binding domain-containing proteins eutK CDS COG4577 2555228 2555728 - [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein eutL CDS COG4816 2555741 2556400 - [E] Ethanolamine utilization protein eutC CDS COG4302 2556410 2557297 - [E] Ethanolamine ammonia-lyase, small subunit eutB CDS COG4303 2557318 2558679 - [E] Ethanolamine ammonia-lyase, large subunit 1364 intZ CDS COG0582 2558858 2560066 + [L] Integrase 1365 yffL CDS NA 2560257 2560898 + NA 1366 yffM CDS NA 2561368 2561613 + NA yffN CDS NA 2561625 2561993 + NA 1367 yffO CDS COG1710 2562111 2562527 + [S] Uncharacterized protein conserved in archaea yffP CDS NA 2562524 2563117 + NA 1368 yffQ CDS NA 2563592 2563969 + NA yffR CDS NA 2563980 2564372 + NA 1369 yffS CDS NA 2564523 2565332 + NA 1370 eutA CDS COG4819 2565481 2566884 - [E] Ethanolamine utilization protein, possible chaperonin protecting eutH CDS COG3192 2566881 2568107 - [E] Ethanolamine utilization protein eutG CDS COG1454 2568324 2569511 - [C] Alcohol dehydrogenase, class IV eutJ CDS COG4820 2569501 2570337 - [E] Ethanolamine utilization protein, possible chaperonin eutE CDS NA 2570348 2571751 - NA eutN CDS COG4576 2571763 2572050 - [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein eutM CDS COG4577 2572157 2572450 - [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein eutD CDS COG0280 2572489 2573505 - [C] Phosphotransacetylase eutT CDS COG4812 2573502 2574305 - [E] Ethanolamine utilization cobalamin adenosyltransferase eutQ CDS COG4766 2574302 2575003 - [E] Ethanolamine utilization protein eutP CDS COG4917 2574978 2575457 - [E] Ethanolamine utilization protein eutS CDS COG4810 2575470 2575805 - [E] Ethanolamine utilization protein 1371 maeB CDS COG0281 2576098 2578377 - [C] Malic enzyme 1372 talA CDS COG0176 2578666 2579616 + [G] Transaldolase tktB CDS COG0021 2579636 2581639 + [G] Transketolase 1373 ypfG CDS ROG3302 2581734 2582777 - NA 1374 nudK CDS COG0494 2582903 2583478 - [LR] NTP pyrophosphohydrolases including oxidative damage repair aegA CDS COG0493 2583546 2585525 - [ER] NADPH-dependent glutamate synthase beta chain and 1375 narQ CDS COG3850 2585731 2587431 + [T] Signal transduction histidine kinase, nitrate/nitrite-specific 1376 acrD CDS COG0841 2587595 2590708 + [V] Cation/multidrug efflux pump 1377 ypfM CDS NA 2590807 2590866 - NA 1378 yffB CDS COG1393 2591247 2591603 + [P] Arsenate reductase and related proteins, glutaredoxin dapE CDS COG0624 2591607 2592734 + [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases ypfN CDS NA 2592762 2592962 + NA 1379 ypfH CDS COG0400 2593072 2593770 - [R] Predicted esterase tmcA CDS COG1444 2593844 2595859 - [R] Predicted P-loop ATPase fused to an ypfJ CDS COG2321 2595874 2596737 - [R] Predicted metalloprotease 1380 purC CDS COG0152 2596905 2597618 - [F] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 1381 bamC CDS COG3317 2597831 2598865 - [M] Uncharacterized lipoprotein dapA CDS COG0329 2598882 2599760 - [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 1382 gcvR CDS COG2716 2599906 2600478 + [E] Glycine cleavage system regulatory protein bcp CDS COG1225 2600478 2600948 + [O] Peroxiredoxin 1383 hyfA CDS COG1142 2601201 2601818 + [C] Fe-S-cluster-containing hydrogenase components 2 hyfB CDS COG0651 2601818 2603836 + [CP] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, hyfC CDS COG0650 2603847 2604794 + [C] Formate hydrogenlyase subunit 4 hyfD CDS COG1009 2604811 2606250 + [CP] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit hyfE CDS COG4237 2606262 2606912 + [C] Hydrogenase 4 membrane component (E) hyfF CDS COG0651 2606917 2608497 + [CP] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, hyfG CDS COG3261 2608487 2610154 + [C] Ni,Fe-hydrogenase III large subunit hyfH CDS COG1143 2610164 2610709 + [C] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 hyfI CDS COG3260 2610706 2611464 + [C] Ni,Fe-hydrogenase III small subunit hyfJ CDS ROG4904 2611457 2611870 + NA hyfR CDS COG3604 2611900 2613912 + [KT] Transcriptional regulator containing GAF, AAA-type ATPase, focB CDS COG2116 2613934 2614782 + [P] Formate/nitrite family of transporters 1384 yfgO CDS COG0628 2614820 2615881 - [R] Predicted permease 1385 bepA CDS COG4783 2616094 2617557 + [R] Putative Zn-dependent protease, contains TPR repeats yfgD CDS COG1393 2617578 2617937 + [P] Arsenate reductase and related proteins, glutaredoxin 1386 hda CDS NA 2618075 2618776 - NA 1387 uraA CDS COG2233 2618871 2620160 - [F] Xanthine/uracil permeases upp CDS COG0035 2620246 2620872 - [F] Uracil phosphoribosyltransferase 1388 purM CDS COG0150 2621197 2622234 + [F] Phosphoribosylaminoimidazole (AIR) synthetase purN CDS COG0299 2622234 2622872 + [F] Folate-dependent phosphoribosylglycinamide formyltransferase PurN 1389 ppk CDS COG0855 2623044 2625110 + [P] Polyphosphate kinase ppx CDS COG0248 2625115 2626656 + [FP] Exopolyphosphatase 1390 pdeF CDS COG2200 2626695 2628938 - [T] FOG: EAL domain 1391 yfgG CDS NA 2629290 2629481 + NA 1392 yfgH CDS ROG1949 2629792 2630310 + NA yfgI CDS NA 2630326 2630865 + NA 1393 guaA CDS COG0519 2630958 2632535 - [F] GMP synthase, PP-ATPase domain/subunit guaB CDS COG0516 2632604 2634070 - [F] IMP dehydrogenase/GMP reductase 1394 xseA CDS COG1570 2634232 2635602 + [L] Exonuclease VII, large subunit 1395 yfgJ CDS NA 2635599 2635814 - NA 1396 der CDS COG1160 2635884 2637356 - [R] Predicted GTPases bamB CDS COG1520 2637474 2638652 - [S] FOG: WD40-like repeat yfgM CDS COG2976 2638663 2639283 - [S] Uncharacterized protein conserved in bacteria hisS CDS COG0124 2639301 2640575 - [J] Histidyl-tRNA synthetase ispG CDS COG0821 2640686 2641804 - [I] Enzyme involved in the deoxyxylulose pathway rodZ CDS COG1426 2641831 2642844 - [S] Uncharacterized protein conserved in bacteria 1397 rlmN CDS COG0820 2643129 2644283 - [R] Predicted Fe-S-cluster redox enzyme ndk CDS COG0105 2644433 2644864 - [F] Nucleoside diphosphate kinase 1398 pbpC CDS COG4953 2645013 2647325 - [M] Membrane carboxypeptidase/penicillin-binding protein PbpC yfhM CDS COG2373 2647326 2652287 - [R] Large extracellular alpha-helical protein 1399 sseA CDS COG2897 2652494 2653339 + [P] Rhodanese-related sulfurtransferase 1400 timP CDS NA 2654001 2654126 + NA 1401 sseB CDS ROG1492 2654157 2654933 - NA 1402 pepB CDS COG0260 2655075 2656358 - [E] Leucyl aminopeptidase 1403 iscX CDS COG2975 2656536 2656736 - [S] Uncharacterized protein conserved in bacteria fdx CDS COG0633 2656748 2657083 - [C] Ferredoxin hscA CDS COG0443 2657085 2658935 - [O] Molecular chaperone hscB CDS COG1076 2658952 2659467 - [O] DnaJ-domain-containing proteins 1 iscA CDS COG0316 2659563 2659886 - [S] Uncharacterized conserved protein iscU CDS COG0822 2659903 2660289 - [C] NifU homolog involved in Fe-S cluster iscS CDS COG1104 2660317 2661531 - [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related iscR CDS COG1959 2661643 2662131 - [K] Predicted transcriptional regulator 1404 trmJ CDS COG0565 2662583 2663323 - [J] rRNA methylase 1405 suhB CDS COG0483 2663442 2664245 + [G] Archaeal fructose-1,6-bisphosphatase and related enzymes of 1406 yfhR CDS COG1073 2664390 2665244 + [R] Hydrolases of the alpha/beta superfamily 1407 csiE CDS COG3711 2665435 2666715 + [K] Transcriptional antiterminator 1408 hcaT CDS NA 2666707 2667846 - NA 1409 hcaR CDS COG0583 2668006 2668896 - [K] Transcriptional regulator iroK CDS NA 2668006 2668071 - NA 1410 hcaE CDS COG4638 2669032 2670393 + [PR] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, hcaF CDS COG5517 2670390 2670908 + [Q] Small subunit of phenylpropionate dioxygenase hcaC CDS COG2146 2670908 2671228 + [PR] Ferredoxin subunits of nitrite reductase and hcaB CDS COG1028 2671225 2672037 + [IQR] Dehydrogenases with different specificities (related to hcaD CDS COG0446 2672047 2673249 + [R] Uncharacterized NAD(FAD)-dependent dehydrogenases 1411 yphA CDS COG2259 2673346 2673768 + [S] Predicted membrane protein 1412 yphB CDS COG2017 2673816 2674688 - [G] Galactose mutarotase and related enzymes yphC CDS COG1063 2674700 2675761 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases yphD CDS COG1172 2675827 2676825 - [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components yphE CDS COG1129 2676850 2678361 - [G] ABC-type sugar transport system, ATPase component yphF CDS COG1879 2678384 2679367 - [G] ABC-type sugar transport system, periplasmic component 1413 yphG CDS COG0457 2679464 2682745 - [R] FOG: TPR repeat 1414 yphH CDS COG1940 2682863 2684056 + [KG] Transcriptional regulator/sugar kinase 1415 glyA CDS COG0112 2684254 2685507 - [E] Glycine/serine hydroxymethyltransferase 1416 hmp CDS COG1017 2685835 2687025 + [C] Hemoglobin-like flavoprotein 1417 glnB CDS COG0347 2687070 2687408 - [E] Nitrogen regulatory protein PII glrR CDS COG2204 2687469 2688803 - [T] Response regulator containing CheY-like receiver, AAA-type qseG CDS ROG4736 2688793 2689506 - NA 1418 glrK CDS COG0642 2689671 2691098 - [T] Signal transduction histidine kinase 1419 purL CDS COG0046 2691656 2695543 - [F] Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 1420 mltF CDS COG4623 2695801 2697357 + [M] Predicted soluble lytic transglycosylase fused to 1421 tadA CDS COG0590 2697354 2697857 - [FJ] Cytosine/adenosine deaminases pgpC CDS NA 2697915 2698550 - NA 1422 yfhH CDS COG1737 2698759 2699607 + [K] Transcriptional regulators 1423 yfhL CDS COG1145 2699663 2699923 + [C] Ferredoxin 1424 shoB CDS NA 2700117 2700197 - NA 1425 acpS CDS COG0736 2700618 2700998 - [I] Phosphopantetheinyl transferase (holo-ACP synthase) pdxJ CDS COG0854 2700998 2701729 - [H] Pyridoxal phosphate biosynthesis protein recO CDS COG1381 2701741 2702469 - [L] Recombinational DNA repair protein (RecF pathway) era CDS COG1159 2702481 2703386 - [R] GTPase rnc CDS COG0571 2703383 2704063 - [K] dsRNA-specific ribonuclease 1426 lepB CDS COG0681 2704335 2705309 - [U] Signal peptidase I lepA CDS COG0481 2705325 2707124 - [M] Membrane GTPase LepA 1427 rseC CDS COG3086 2707322 2707801 - [T] Positive regulator of sigma E activity rseB CDS COG3026 2707798 2708754 - [T] Negative regulator of sigma E activity rseA CDS COG3073 2708754 2709404 - [T] Negative regulator of sigma E activity rpoE CDS COG1595 2709437 2710012 - [K] DNA-directed RNA polymerase specialized sigma subunit, rseD CDS NA 2710009 2710164 - NA 1428 nadB CDS COG0029 2710420 2712042 + [H] Aspartate oxidase 1429 yfiC CDS COG4123 2712027 2712764 - [R] Predicted O-methyltransferase 1430 srmB CDS COG0513 2712896 2714230 + [LKJ] Superfamily II DNA and RNA helicases 1431 yfiE CDS COG0583 2714439 2715320 - [K] Transcriptional regulator 1432 eamB CDS COG1280 2715423 2716010 + [E] Putative threonine efflux protein 1433 grcA CDS COG3445 2716066 2716449 - [R] Acid-induced glycyl radical enzyme 1434 ung CDS COG0692 2716754 2717443 + [L] Uracil DNA glycosylase 1435 yfiF CDS COG0566 2717491 2718528 - [J] rRNA methylases 1436 trxC CDS COG0526 2718735 2719154 + [OC] Thiol-disulfide isomerase and thioredoxins tapT CDS COG3148 2719223 2719921 + [S] Uncharacterized conserved protein patZ CDS COG1042 2719953 2722613 + [C] Acyl-CoA synthetase (NDP forming) 1437 pssL CDS NA 2722702 2722743 + NA pssA CDS NA 2722727 2724082 + NA yfiM CDS COG5544 2724128 2724451 + [R] Predicted periplasmic lipoprotein 1438 kgtP CDS COG0477 2724448 2725746 - [GEPR] Permeases of the major facilitator superfamily 1439 yfiS CDS NA 2725925 2725987 + NA 1440 rrfG rRNA NA 2726069 2726188 - NA rrlG rRNA NA 2726281 2729184 - NA gltW tRNA NA 2729369 2729444 - NA rrsG rRNA NA 2729616 2731157 - NA 1441 clpB CDS COG0542 2731600 2734173 - [O] ATPases with chaperone activity, ATP-binding subunit 1442 clpB_2 CDS COG0542 2731600 2733729 - [O] ATPases with chaperone activity, ATP-binding subunit 1443 yfiH CDS COG1496 2734303 2735034 - [S] Uncharacterized conserved protein rluD CDS COG0564 2735031 2736011 - [J] Pseudouridylate synthases, 23S RNA-specific 1444 bamD CDS COG4105 2736146 2736883 + [R] DNA uptake lipoprotein 1445 raiA CDS COG1544 2737154 2737495 + [J] Ribosome-associated protein Y (PSrp-1) 1446 pheL CDS NA 2737599 2737646 + NA 1447 pheA CDS COG0077 2737745 2738905 + [E] Prephenate dehydratase 1448 tyrA CDS COG1605 2738948 2740069 - [E] Chorismate mutase aroF CDS COG0722 2740080 2741150 - [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 1449 yfiL CDS ROG2807 2741360 2741725 + NA 1450 yfiR CDS ROG7826 2741875 2742393 + NA dgcN CDS COG2199 2742383 2743609 + [T] FOG: GGDEF domain yfiB CDS COG2885 2743625 2744107 + [M] Outer membrane protein and related peptidoglycan-associated 1451 rplS CDS COG0335 2744183 2744530 - [J] Ribosomal protein L19 trmD CDS COG0336 2744572 2745339 - [J] tRNA-(guanine-N1)-methyltransferase rimM CDS COG0806 2745370 2745918 - [J] RimM protein, required for 16S rRNA rpsP CDS COG0228 2745937 2746185 - [J] Ribosomal protein S16 ffh CDS COG0541 2746434 2747795 - [U] Signal recognition particle GTPase 1452 ypjD CDS COG4137 2747962 2748753 + [R] ABC-type uncharacterized transport system, permease component yfjD CDS COG4536 2748774 2750060 + [P] Putative Mg2+ and Co2+ transporter CorB 1453 grpE CDS COG0576 2750115 2750708 - [O] Molecular chaperone GrpE (heat shock protein) 1454 nadK CDS COG0061 2750831 2751709 + [G] Predicted sugar kinase recN CDS COG0497 2751795 2753456 + [L] ATPase involved in DNA repair bamE CDS COG2913 2753605 2753946 + [J] Small protein A (tmRNA-binding) 1455 yfjF CDS COG2914 2754008 2754298 - [S] Uncharacterized protein conserved in bacteria ratA CDS COG2867 2754288 2754764 - [I] Oligoketide cyclase/lipid transport protein 1456 smpB CDS COG0691 2754896 2755378 + [O] tmRNA-binding protein 1457 intA CDS COG0582 2756159 2757400 + [L] Integrase 1458 yfjH CDS ROG1643 2757644 2758600 - NA 1459 alpA CDS COG3311 2758644 2758856 + [K] Predicted transcriptional regulator 1460 yfjI CDS ROG1110 2758985 2760394 + NA 1461 yfjJ CDS ROG3235 2760547 2761173 + NA 1462 abpB CDS COG1204 2761351 2763540 - [R] Superfamily II helicase abpA CDS ROG4354 2763537 2765153 - NA 1463 yfjM CDS COG1479 2765513 2765776 - [S] Uncharacterized conserved protein 1464 rnlA CDS NA 2765918 2766991 + NA rnlB CDS NA 2766984 2767355 + NA 1465 yfjP CDS COG3596 2767710 2768573 + [R] Predicted GTPase 1466 yfjQ CDS ROG1397 2768665 2769486 + NA 1467 yfjR CDS COG2378 2769703 2770404 + [K] Predicted transcriptional regulator ypjK CDS NA 2770445 2770681 + NA yfjS CDS COG4105 2770681 2771124 + [R] DNA uptake lipoprotein yfjT CDS NA 2771148 2771615 + NA 1468 yfjU CDS COG1393 2771840 2772154 - [P] Arsenate reductase and related proteins, glutaredoxin 1469 yfjW CDS COG1967 2773318 2775021 + [S] Predicted membrane protein 1470 yfjX CDS ROG6574 2775919 2776377 + NA yfjY CDS COG2003 2776386 2776868 + [L] DNA repair proteins ypjJ CDS NA 2776877 2777077 + NA yfjZ CDS NA 2777115 2777432 + NA ypjF CDS NA 2777453 2777782 + NA 1471 ypjA CDS COG3468 2778146 2782726 - [MU] Type V secretory pathway, adhesin AidA 1472 ypjB CDS NA 2783638 2784429 - NA 1473 ypjC CDS NA 2784529 2785011 - NA 1474 ileY tRNA NA 2785762 2785837 - NA 1475 glaH CDS ROG3396 2788985 2789962 + NA lhgD CDS COG0579 2789982 2791250 + [R] Predicted dehydrogenase gabD CDS COG1012 2791273 2792721 + [C] NAD-dependent aldehyde dehydrogenases gabT CDS COG0160 2792735 2794015 + [E] 4-aminobutyrate aminotransferase and related aminotransferases gabP CDS COG1113 2794253 2795653 + [E] Gamma-aminobutyrate permease and related permeases glaR CDS COG1802 2795674 2796336 + [K] Transcriptional regulators 1476 kbp CDS COG1652 2796337 2796786 - [S] Uncharacterized protein containing LysM domain yqaE CDS COG0401 2796870 2797028 - [S] Uncharacterized homolog of Blt101 1477 ygaV CDS COG0640 2797211 2797510 + [K] Predicted transcriptional regulators ygaP CDS COG0607 2797520 2798044 + [P] Rhodanese-related sulfurtransferase 1478 stpA CDS COG2916 2798091 2798495 - [R] DNA-binding protein H-NS 1479 alaE CDS ROG1113 2799164 2799613 + NA 1480 ygaC CDS NA 2799650 2799994 - NA 1481 ygaM CDS COG4575 2800146 2800475 + [S] Uncharacterized conserved protein 1482 nrdH CDS COG0695 2800723 2800968 + [O] Glutaredoxin and related proteins nrdI CDS COG1780 2800965 2801375 + [F] Protein involved in ribonucleotide reduction nrdE CDS COG0209 2801348 2803492 + [F] Ribonucleotide reductase, alpha subunit nrdF CDS COG0208 2803502 2804461 + [F] Ribonucleotide reductase, beta subunit 1483 proV CDS COG4175 2804815 2806017 + [E] ABC-type proline/glycine betaine transport system, ATPase proW CDS COG4176 2806010 2807074 + [E] ABC-type proline/glycine betaine transport system, permease proX CDS COG2113 2807132 2808124 + [E] ABC-type proline/glycine betaine transport systems, periplasmic 1484 ygaZ CDS COG1296 2809617 2810354 + [E] Predicted branched-chain amino acid permease (azaleucine ygaH CDS NA 2810344 2810679 + NA 1485 mprA CDS COG1846 2810770 2811300 + [K] Transcriptional regulators emrA CDS COG1566 2811427 2812599 + [V] Multidrug resistance efflux pump emrB CDS COG0477 2812616 2814154 + [GEPR] Permeases of the major facilitator superfamily 1486 luxS CDS COG1854 2814218 2814733 - [T] LuxS protein involved in autoinducer AI2 gshA CDS COG2918 2814883 2816439 - [H] Gamma-glutamylcysteine synthetase yqaA CDS COG1238 2816512 2816940 - [S] Predicted membrane protein yqaB CDS COG0637 2816937 2817503 - [R] Predicted phosphatase/phosphohexomutase 1487 argQ tRNA NA 2817784 2817860 - NA argZ tRNA NA 2818059 2818135 - NA argY tRNA NA 2818198 2818274 - NA argV tRNA NA 2818473 2818549 - NA serV tRNA NA 2818553 2818645 - NA 1488 csrA CDS COG1551 2818961 2819146 - [T] Carbon storage regulator (could also regulate 1489 alaS CDS COG0013 2819381 2822011 - [J] Alanyl-tRNA synthetase recX CDS COG2137 2822139 2822639 - [R] Uncharacterized protein conserved in bacteria recA CDS COG0468 2822708 2823769 - [L] RecA/RadA recombinase pncC CDS COG1546 2823849 2824346 - [R] Uncharacterized protein (competence- and mitomycin-induced) 1490 mltB CDS COG2951 2824491 2825576 - [M] Membrane-bound lytic murein transglycosylase B 1491 srlA CDS COG3730 2825832 2826395 + [G] Phosphotransferase system sorbitol-specific component IIC srlE CDS COG3732 2826392 2827351 + [G] Phosphotransferase system sorbitol-specific component IIBC srlB CDS COG3731 2827362 2827733 + [G] Phosphotransferase system sorbitol-specific component IIA srlD CDS COG1028 2827737 2828516 + [IQR] Dehydrogenases with different specificities (related to 1492 gutM CDS COG4578 2828621 2828980 + [K] Glucitol operon activator srlR CDS COG1349 2829047 2829820 + [KG] Transcriptional regulators of sugar metabolism gutQ CDS COG0794 2829813 2830778 + [M] Predicted sugar phosphate isomerase involved in 1493 norR CDS COG3604 2830775 2832289 - [KT] Transcriptional regulator containing GAF, AAA-type ATPase, 1494 norV CDS COG0426 2832476 2833915 + [C] Uncharacterized flavoproteins norW CDS COG0446 2833912 2835045 + [R] Uncharacterized NAD(FAD)-dependent dehydrogenases 1495 hypF CDS COG0068 2835173 2837425 - [O] Hydrogenase maturation factor hydN CDS COG1142 2837578 2838105 - [C] Fe-S-cluster-containing hydrogenase components 2 1496 ascG CDS COG1609 2838254 2839264 - [K] Transcriptional regulators 1497 ascF CDS COG1264 2839524 2840981 + [G] Phosphotransferase system IIB components ascB CDS COG2723 2840990 2842414 + [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase 1498 hycI CDS COG0680 2842573 2843043 - [C] Ni,Fe-hydrogenase maturation factor hycH CDS ROG4904 2843036 2843446 - NA hycG CDS COG3260 2843443 2844210 - [C] Ni,Fe-hydrogenase III small subunit hycF CDS COG1143 2844210 2844752 - [C] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 hycE CDS COG3261 2844762 2846471 - [C] Ni,Fe-hydrogenase III large subunit hycD CDS COG0650 2846489 2847412 - [C] Formate hydrogenlyase subunit 4 hycC CDS COG0651 2847415 2849241 - [CP] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, hycB CDS COG1142 2849238 2849849 - [C] Fe-S-cluster-containing hydrogenase components 2 1499 hycA CDS NA 2849974 2850435 - NA 1500 hypA CDS COG0375 2850647 2850997 + [R] Zn finger protein HypA/HybF (possibly regulating hypB CDS COG0378 2851001 2851873 + [OK] Ni2+-binding GTPase involved in regulation of hypC CDS COG0298 2851864 2852136 + [O] Hydrogenase maturation factor hypD CDS COG0409 2852136 2853257 + [O] Hydrogenase maturation factor hypE CDS COG0309 2853254 2854264 + [O] Hydrogenase maturation factor fhlA CDS COG3604 2854338 2856416 + [KT] Transcriptional regulator containing GAF, AAA-type ATPase, 1501 ygbA CDS ROG0422 2856453 2856806 - NA 1502 mutS CDS COG0249 2857093 2859654 + [L] Mismatch repair ATPase (MutS family) 1503 pphB CDS NA 2859760 2860416 + NA 1504 ygbI CDS COG1349 2860467 2861234 - [KG] Transcriptional regulators of sugar metabolism 1505 ygbJ CDS COG2084 2861430 2862338 + [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases ygbK CDS COG3395 2862335 2863501 + [S] Uncharacterized protein conserved in bacteria ygbL CDS COG0235 2863593 2864231 + [G] Ribulose-5-phosphate 4-epimerase and related epimerases and ygbM CDS COG3622 2864236 2865012 + [G] Hydroxypyruvate isomerase ygbN CDS COG2610 2865101 2866465 + [GE] H+/gluconate symporter and related permeases 1506 rpoS CDS COG0568 2866559 2867551 - [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) nlpD CDS COG0739 2867614 2868753 - [M] Membrane proteins related to metalloendopeptidases pcm CDS COG2518 2868893 2869519 - [O] Protein-L-isoaspartate carboxylmethyltransferase umpG CDS COG0496 2869513 2870274 - [R] Predicted acid phosphatase truD CDS COG0585 2870255 2871304 - [S] Uncharacterized conserved protein ispF CDS COG0245 2871301 2871780 - [I] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD CDS COG1211 2871780 2872490 - [I] 4-diphosphocytidyl-2-methyl-D-erithritol synthase ftsB CDS COG2919 2872509 2872820 - [D] Septum formation initiator 1507 ygbE CDS NA 2873014 2873337 - NA cysC CDS COG0529 2873387 2873992 - [P] Adenylylsulfate kinase and related kinases cysN CDS COG2895 2873992 2875419 - [P] GTPases - Sulfate adenylate transferase subunit cysD CDS COG0175 2875421 2876329 - [EH] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase 1508 iap CDS COG2234 2876581 2877618 + [R] Predicted aminopeptidases 1509 cas2 CDS ROG0186 2878569 2878853 - NA cas1 CDS COG1518 2878855 2879772 - [L] Uncharacterized protein predicted to be involved casE CDS ROG0140 2879788 2880387 - NA casD CDS ROG0047 2880374 2881048 - NA casC CDS ROG0031 2881051 2882142 - NA casB CDS ROG1578 2882155 2882637 - NA casA CDS ROG2522 2882630 2884138 - NA 1510 cas3 CDS COG1203 2884553 2887219 - [R] Predicted helicases 1511 cysH CDS COG0175 2887578 2888312 - [EH] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase cysI CDS COG0155 2888387 2890099 - [P] Sulfite reductase, beta subunit (hemoprotein) cysJ CDS COG0369 2890099 2891898 - [P] Sulfite reductase, alpha subunit (flavoprotein) 1512 queD CDS COG0720 2892214 2892579 + [H] 6-pyruvoyl-tetrahydropterin synthase 1513 ygcN CDS COG0644 2892657 2893928 + [C] Dehydrogenases (flavoproteins) ygcO CDS COG2440 2893919 2894179 + [C] Ferredoxin-like protein ygcP CDS COG1954 2894196 2894771 + [K] Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 1514 ygcQ CDS COG2025 2894919 2895779 - [C] Electron transfer flavoprotein, alpha subunit ygcR CDS COG2086 2895776 2896555 - [C] Electron transfer flavoprotein, beta subunit ygcS CDS ROG2472 2896533 2897870 - NA 1515 ygcU CDS COG0277 2897964 2899418 - [C] FAD/FMN-containing dehydrogenases ygcW CDS COG1028 2899488 2900273 - [IQR] Dehydrogenases with different specificities (related to 1516 yqcE CDS NA 2900592 2901869 + NA ygcE CDS COG1070 2901896 2903374 + [G] Sugar (pentulose and hexulose) kinases 1517 queE CDS COG0602 2904747 2905418 - [O] Organic radical activating enzymes 1518 yqcG CDS NA 2905557 2905697 + NA ygcG CDS COG1512 2905711 2906583 + [R] Beta-propeller domains of methanol dehydrogenase type 1519 eno CDS COG0148 2906643 2907941 - [G] Enolase pyrG CDS COG0504 2908029 2909666 - [F] CTP synthase (UTP-ammonia lyase) 1520 mazG CDS COG1694 2909894 2910685 - [R] Predicted pyrophosphatase mazF CDS COG2337 2910756 2911091 - [T] Growth inhibitor mazE CDS COG2336 2911091 2911339 - [T] Growth regulator relA CDS COG0317 2911417 2913651 - [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases rlmD CDS COG2265 2913699 2915000 - [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 1521 barA CDS COG0642 2915057 2917813 + [T] Signal transduction histidine kinase 1522 gudD CDS COG4948 2918045 2919385 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of gudX CDS COG4948 2919406 2920746 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of gudP CDS COG2271 2920748 2922100 - [G] Sugar phosphate permease 1523 yqcA CDS COG0716 2922535 2922984 - [C] Flavodoxins truC CDS COG0564 2923002 2923784 - [J] Pseudouridylate synthases, 23S RNA-specific yqcC CDS COG3098 2923784 2924113 - [S] Uncharacterized protein conserved in bacteria 1524 syd CDS ROG1988 2924735 2925280 - NA 1525 queF CDS COG2904 2925348 2926196 + [S] Uncharacterized protein conserved in bacteria 1526 ppnN CDS COG1611 2926308 2927672 + [R] Predicted Rossmann fold nucleotide-binding protein 1527 sdaC CDS COG0814 2928229 2929518 + [E] Amino acid permeases sdaB CDS COG1760 2929576 2930943 + [E] L-serine deaminase 1528 ygdG CDS COG0258 2931055 2931810 + [L] 5'-3' exonuclease (including N-terminal domain of 1529 fucO CDS COG1454 2931865 2933013 - [C] Alcohol dehydrogenase, class IV fucA CDS COG0235 2933041 2933688 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 1530 fucP CDS COG0738 2934235 2935551 + [G] Fucose permease fucI CDS COG2407 2935584 2937359 + [G] L-fucose isomerase and related proteins fucK CDS COG1070 2937468 2938886 + [G] Sugar (pentulose and hexulose) kinases fucU CDS COG4154 2938888 2939310 + [G] Fucose dissimilation pathway protein FucU fucR CDS COG1349 2939368 2940099 + [KG] Transcriptional regulators of sugar metabolism 1531 rlmM CDS COG2933 2940143 2941243 - [R] Predicted SAM-dependent methyltransferase ygdD CDS COG2363 2941236 2941631 - [S] Uncharacterized small membrane protein gcvA CDS COG0583 2941650 2942567 - [K] Transcriptional regulator 1532 ygdI CDS ROG7894 2942918 2943145 - NA 1533 csdA CDS COG0520 2943337 2944542 + [E] Selenocysteine lyase csdE CDS COG2166 2944542 2944985 + [R] SufE protein probably involved in Fe-S 1534 tcdA CDS COG1179 2945036 2945842 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and 1535 mltA CDS COG2821 2946081 2947178 - [M] Membrane-bound lytic murein transglycosylase 1536 metZ tRNA NA 2947387 2947463 + NA metW tRNA NA 2947497 2947573 + NA metV tRNA NA 2947607 2947683 + NA 1537 amiC CDS COG0860 2947757 2949010 - [M] N-acetylmuramoyl-L-alanine amidase 1538 argA CDS COG0548 2949242 2950573 + [E] Acetylglutamate kinase 1539 recD CDS COG0507 2950635 2952461 - [L] ATP-dependent exoDNAse (exonuclease V), alpha subunit recB CDS COG1074 2952461 2956003 - [L] ATP-dependent exoDNAse (exonuclease V) beta subunit ptrA CDS COG1025 2955996 2958884 - [O] Secreted/periplasmic Zn-dependent peptidases, insulinase-like 1540 recC CDS COG1330 2959060 2962428 - [L] Exonuclease V gamma subunit ppdC CDS COG4967 2962441 2962764 - [NU] Tfp pilus assembly protein PilV ygdB CDS NA 2962749 2963156 - NA ppdB CDS COG4795 2963153 2963716 - [U] Type II secretory pathway, component PulJ ppdA CDS COG2165 2963707 2964177 - [NU] Type II secretory pathway, pseudopilin PulG 1541 thyA CDS COG0207 2964361 2965155 - [F] Thymidylate synthase lgt CDS COG0682 2965162 2966037 - [M] Prolipoprotein diacylglyceryltransferase 1542 ptsP CDS COG3605 2966188 2968434 - [T] Signal transduction protein containing GAF and rppH CDS COG0494 2968447 2968977 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1543 ygdT CDS NA 2969330 2969476 - NA 1544 mutH CDS COG3066 2969662 2970351 + [L] DNA mismatch repair protein ygdQ CDS COG0861 2970420 2971133 + [P] Membrane protein TerC, possibly involved in 1545 ygdR CDS ROG7894 2971271 2971489 + NA 1546 tas CDS COG0667 2971597 2972637 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1547 lplT CDS NA 2972669 2973862 - NA aas CDS COG0318 2973855 2976014 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 1548 galR CDS COG1609 2976599 2977630 + [K] Transcriptional regulators 1549 lysA CDS COG0019 2977637 2978899 - [E] Diaminopimelate decarboxylase 1550 lysR CDS COG0583 2979021 2979956 + [K] Transcriptional regulator 1551 ygeA CDS COG1794 2979943 2980635 - [M] Aspartate racemase 1552 araE CDS COG2814 2980764 2982182 - [G] Arabinose efflux permease 1553 kduD CDS COG1028 2982497 2983258 - [IQR] Dehydrogenases with different specificities (related to kduI CDS COG3717 2983288 2984124 - [G] 5-keto 4-deoxyuronate isomerase 1554 yqeF CDS COG0183 2984411 2985592 - [I] Acetyl-CoA acetyltransferase 1555 yqeG CDS COG0814 2985847 2987076 + [E] Amino acid permeases 1556 yqeH CDS NA 2987536 2988168 + NA 1557 yqeI CDS COG3710 2988502 2989311 + [K] DNA-binding winged-HTH domains yqeJ CDS NA 2989304 2989786 + NA 1558 yqeL CDS NA 2989819 2989899 - NA yqeK CDS NA 2989935 2990360 - NA 1559 ygeG CDS NA 2991268 2991759 + NA 1560 ygeH CDS COG3710 2992094 2993470 + [K] DNA-binding winged-HTH domains 1561 ygeI CDS NA 2993638 2993856 + NA 1562 insD4 CDS COG2801 2996372 2997277 - [L] Transposase and inactivated derivatives insC4 CDS COG2963 2997235 2997600 - [L] Transposase and inactivated derivatives 1563 ygeQ CDS NA 2998034 2998828 - NA 1564 glyU tRNA NA 2998984 2999057 - NA 1565 actS CDS COG0739 2999136 2999891 - [M] Membrane proteins related to metalloendopeptidases 1566 xdhA CDS COG1529 3000345 3002603 + [C] Aerobic-type carbon monoxide dehydrogenase, large subunit xdhB CDS COG1319 3002614 3003492 + [C] Aerobic-type carbon monoxide dehydrogenase, middle subunit xdhC CDS COG2080 3003489 3003968 + [C] Aerobic-type carbon monoxide dehydrogenase, small subunit 1567 ygeV CDS COG3829 3004008 3005786 - [KT] Transcriptional regulator containing PAS, AAA-type ATPase, 1568 ygeW CDS COG0078 3006262 3007452 + [E] Ornithine carbamoyltransferase ygeX CDS COG1171 3007510 3008706 + [E] Threonine dehydratase ygeY CDS COG0624 3008764 3009975 + [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases hyuA CDS COG0044 3010028 3011413 + [F] Dihydroorotase and related cyclic amidohydrolases yqeA CDS COG0549 3011461 3012393 + [E] Carbamate kinase 1569 yqeB CDS COG1975 3012614 3014239 - [O] Xanthine and CO dehydrogenases maturation factor, yqeC CDS ROG0522 3014287 3015057 - NA 1570 mocA CDS COG2068 3015160 3015738 + [R] Uncharacterized MobA-related protein 1571 ygfK CDS COG0493 3016060 3019158 + [ER] NADPH-dependent glutamate synthase beta chain and ssnA CDS COG0402 3019161 3020489 + [FR] Cytosine deaminase and related metal-dependent hydrolases ygfM CDS COG1319 3020540 3021319 + [C] Aerobic-type carbon monoxide dehydrogenase, middle subunit xdhD CDS COG1529 3021316 3024186 + [C] Aerobic-type carbon monoxide dehydrogenase, large subunit xanQ CDS COG2233 3024351 3025751 + [F] Xanthine/uracil permeases guaD CDS COG0402 3025766 3027085 + [FR] Cytosine deaminase and related metal-dependent hydrolases ghxQ CDS COG2252 3027121 3028488 + [R] Permeases 1572 ygfS CDS COG1142 3028524 3029012 - [C] Fe-S-cluster-containing hydrogenase components 2 ygfT CDS COG0493 3029012 3030931 - [ER] NADPH-dependent glutamate synthase beta chain and 1573 uacT CDS COG2233 3031367 3032815 + [F] Xanthine/uracil permeases yqfG CDS COG1434 3032817 3032942 + [S] Uncharacterized conserved protein 1574 yqfH CDS NA 3032939 3033010 - NA 1575 idi CDS COG1443 3033065 3033613 + [I] Isopentenyldiphosphate isomerase 1576 lysS CDS COG1190 3033657 3035174 - [J] Lysyl-tRNA synthetase (class II) 1577 prfB CDS NA 3036208 3036282 - NA prfB_2 CDS COG1186 3035184 3036206 - [J] Protein chain release factor B recJ CDS COG0608 3036373 3038106 - [L] Single-stranded DNA-specific exonuclease dsbC CDS COG1651 3038112 3038822 - [O] Protein-disulfide isomerase xerD CDS COG4974 3038847 3039743 - [L] Site-specific recombinase XerD 1578 fldB CDS COG0716 3039855 3040376 + [C] Flavodoxins 1579 ygfX CDS ROG8459 3040416 3040823 - NA sdhE CDS COG2938 3040804 3041070 - [S] Uncharacterized conserved protein 1580 ygfZ CDS COG0354 3041313 3042293 + [R] Predicted aminomethyltransferase related to GcvT 1581 yqfA CDS COG1272 3042489 3043148 - [R] Predicted membrane protein, hemolysin III homolog 1582 yqfB CDS COG3097 3043312 3043623 - [S] Uncharacterized protein conserved in bacteria 1583 bglA CDS COG2723 3043662 3045101 + [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase 1584 ygfF CDS COG1028 3045158 3045901 - [IQR] Dehydrogenases with different specificities (related to 1585 gcvP CDS COG1003 3046168 3049041 - [E] Glycine cleavage system protein P (pyridoxal-binding), gcvH CDS COG0509 3049160 3049549 - [E] Glycine cleavage system H protein (lipoate-binding) gcvT CDS COG0404 3049573 3050667 - [E] Glycine cleavage system T protein (aminomethyltransferase) 1586 yqfI CDS NA 3050958 3051041 + NA 1587 ubiI CDS COG0654 3051115 3052317 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases ubiH CDS COG0654 3052340 3053518 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases pepP CDS COG0006 3053515 3054840 - [E] Xaa-Pro aminopeptidase ygfB CDS COG3079 3054866 3055444 - [S] Uncharacterized protein conserved in bacteria 1588 zapA CDS COG3027 3055612 3055941 + [S] Uncharacterized protein conserved in bacteria 1589 fau CDS COG0212 3056241 3056789 + [H] 5-formyltetrahydrofolate cyclo-ligase 1590 ibsC CDS NA 3056890 3056949 - NA 1591 serA CDS COG0111 3057178 3058410 - [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 1592 rpiA CDS COG0120 3058666 3059325 - [G] Ribose 5-phosphate isomerase 1593 argP CDS COG0583 3059753 3060646 + [K] Transcriptional regulator 1594 scpA CDS COG1884 3060850 3062994 + [I] Methylmalonyl-CoA mutase, N-terminal domain/subunit argK CDS COG1703 3062987 3063982 + [E] Putative periplasmic protein kinase ArgK and scpB CDS COG1024 3063993 3064778 + [I] Enoyl-CoA hydratase/carnithine racemase scpC CDS COG0427 3064802 3066280 + [C] Acetyl-CoA hydrolase 1595 ygfI CDS COG0583 3066277 3067173 - [K] Transcriptional regulator 1596 yggE CDS COG2968 3067340 3068080 - [S] Uncharacterized conserved protein 1597 argO CDS COG1279 3068173 3068808 - [R] Lysine efflux permease 1598 mscS CDS COG0668 3068947 3069807 - [M] Small-conductance mechanosensitive channel 1599 fbaA CDS COG0191 3070165 3071244 - [G] Fructose/tagatose bisphosphate aldolase pgk CDS COG0126 3071459 3072622 - [G] 3-phosphoglycerate kinase epd CDS COG0057 3072672 3073691 - [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 1600 yggC CDS COG1072 3073976 3074689 - [H] Panthothenate kinase fumE CDS COG3722 3074686 3075195 - [K] Transcriptional regulator yggF CDS COG1494 3075217 3076182 - [G] Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins yggP CDS COG1063 3076179 3077456 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases cmtA CDS COG2213 3077471 3078859 - [G] Phosphotransferase system, mannitol-specific IIBC component cmtB CDS COG1762 3078887 3079330 - [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 1601 tktA CDS COG0021 3079644 3081635 - [G] Transketolase 1602 loiP CDS COG4784 3081913 3082671 + [R] Putative Zn-dependent protease 1603 speB CDS COG0010 3082877 3083797 - [E] Arginase/agmatinase/formimionoglutamate hydrolase, arginase family speA CDS COG1166 3083935 3085911 - [E] Arginine decarboxylase (spermidine biosynthesis) yqgB CDS NA 3085920 3086051 - NA 1604 yqgG CDS NA 3086145 3086288 - NA 1605 yqgC CDS NA 3086187 3086402 + NA 1606 yqgD CDS NA 3086399 3086650 - NA 1607 metK CDS COG0192 3086706 3087860 + [H] S-adenosylmethionine synthetase 1608 galP CDS COG2814 3088284 3089678 + [G] Arabinose efflux permease 1609 yggI CDS COG3091 3089755 3090252 + [S] Uncharacterized protein conserved in bacteria endA CDS COG2356 3090347 3091054 + [L] Endonuclease I rsmE CDS COG1385 3091134 3091865 + [S] Uncharacterized protein conserved in bacteria gshB CDS COG0189 3091878 3092828 + [HJ] Glutathione synthase/Ribosomal protein S6 modification enzyme yqgE CDS COG1678 3092937 3093500 + [K] Putative transcriptional regulator yqgF CDS COG0816 3093500 3093916 + [L] Predicted endonuclease involved in recombination (possible 1610 yggR CDS COG2805 3094100 3095080 - [NU] Tfp pilus assembly protein, pilus retraction 1611 yggS CDS COG0325 3095098 3095802 + [R] Predicted enzyme with a TIM-barrel fold yggT CDS COG0762 3095820 3096386 + [S] Predicted integral membrane protein yggU CDS COG1872 3096383 3096673 + [S] Uncharacterized conserved protein rdgB CDS COG0127 3096681 3097274 + [F] Xanthosine triphosphate pyrophosphatase hemW CDS COG0635 3097267 3098403 + [H] Coproporphyrinogen III oxidase and related Fe-S 1612 yggM CDS ROG1210 3098558 3099565 - NA 1613 ansB CDS COG0252 3099682 3100728 - [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 1614 yggN CDS ROG7720 3100904 3101623 - NA 1615 yggL CDS COG3171 3101807 3102133 - [S] Uncharacterized protein conserved in bacteria trmB CDS COG0220 3102133 3102852 - [R] Predicted S-adenosylmethionine-dependent methyltransferase 1616 mutY CDS COG1194 3103013 3104065 + [L] A/G-specific DNA glycosylase yggX CDS COG2924 3104093 3104368 + [CO] Fe-S cluster protector protein mltC CDS COG0741 3104433 3105512 + [M] Soluble lytic murein transglycosylase and related 1617 nupG CDS NA 3105714 3106970 + NA 1618 speC CDS COG1982 3107020 3109155 - [E] Arginine/lysine/ornithine decarboxylases 1619 yqgH CDS NA 3109317 3109400 - NA 1620 yqgA CDS COG1811 3109553 3110260 + [R] Uncharacterized membrane protein, possible Na+ channel 1621 pheV tRNA NA 3110366 3110441 + NA 1622 yghD CDS COG3149 3110590 3111126 - [U] Type II secretory pathway, component PulM yghE CDS COG3297 3111128 3111988 - [U] Type II secretory pathway, component PulL 1623 yqhJ CDS COG0054 3111266 3111325 + [H] Riboflavin synthase beta-chain 1624 yghF CDS COG3031 3112054 3113049 - [U] Type II secretory pathway, component PulC yghG CDS COG5461 3113067 3113477 - [N] Type IV pili component 1625 pppA CDS COG1989 3113543 3114352 - [NOU] Type II secretory pathway, prepilin signal 1626 yghJ CDS ROG7671 3114550 3119112 - NA 1627 glcA CDS COG1620 3119597 3121279 - [C] L-lactate permease 1628 glcB CDS COG2225 3121634 3123805 - [C] Malate synthase glcG CDS COG3193 3123827 3124231 - [R] Uncharacterized protein, possibly involved in utilization glcF CDS COG0247 3124236 3125459 - [C] Fe-S oxidoreductase glcE CDS COG0277 3125470 3126522 - [C] FAD/FMN-containing dehydrogenases glcD CDS COG0277 3126522 3128021 - [C] FAD/FMN-containing dehydrogenases 1629 glcC CDS COG2186 3128272 3129036 + [K] Transcriptional regulators 1630 yghO CDS ROG0013 3129043 3130215 - NA 1631 insH9 CDS COG3039 3130214 3131194 + [L] Transposase and inactivated derivatives, IS5 family 1632 yghQ CDS COG2244 3131341 3132408 - [R] Membrane protein involved in the export yghR CDS ROG5105 3132454 3133212 - NA yghS CDS ROG5105 3133244 3133957 - NA 1633 yghT CDS ROG5105 3134131 3134823 + NA 1634 pitB CDS COG0306 3134872 3136371 - [P] Phosphate/sulphate permeases 1635 gss CDS COG0754 3136663 3138522 - [E] Glutathionylspermidine synthase 1636 yghU CDS COG0625 3138727 3139593 + [O] Glutathione S-transferase 1637 hybG CDS COG0298 3139716 3139964 - [O] Hydrogenase maturation factor hybF CDS COG0375 3139977 3140318 - [R] Zn finger protein HypA/HybF (possibly regulating hybE CDS ROG0539 3140311 3140799 - NA hybD CDS COG0680 3140792 3141286 - [C] Ni,Fe-hydrogenase maturation factor hybC CDS COG0374 3141286 3142989 - [C] Ni,Fe-hydrogenase I large subunit hybB CDS COG5557 3142986 3144164 - [C] Polysulphide reductase hybA CDS COG0437 3144154 3145140 - [C] Fe-S-cluster-containing hydrogenase components 1 hybO CDS COG1740 3145143 3146261 - [C] Ni,Fe-hydrogenase I small subunit 1638 yghW CDS NA 3146450 3146737 - NA 1639 yqhI CDS NA 3147597 3147740 - NA 1640 gpr CDS COG0667 3147897 3148937 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1641 yqhA CDS COG2862 3148977 3149471 - [S] Predicted membrane protein 1642 yghA CDS COG1028 3149662 3150546 + [IQR] Dehydrogenases with different specificities (related to 1643 exbD CDS COG0848 3150818 3151243 - [U] Biopolymer transport protein exbB CDS COG0811 3151250 3151984 - [U] Biopolymer transport proteins 1644 metC CDS COG0626 3152236 3153423 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases 1645 yghB CDS COG0586 3153563 3154222 + [S] Uncharacterized membrane-associated protein 1646 yqhC CDS COG2207 3154262 3155218 - [K] AraC-type DNA-binding domain-containing proteins 1647 yqhD CDS COG1979 3155355 3156518 + [C] Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family dkgA CDS COG0656 3156623 3157450 + [R] Aldo/keto reductases, related to diketogulonate reductase 1648 yqhG CDS ROG8196 3157650 3158576 + NA yqhH CDS COG4238 3158627 3158884 + [M] Murein lipoprotein 1649 ygiQ CDS COG1032 3158927 3161146 - [C] Fe-S oxidoreductase 1650 ftsP CDS COG2132 3161257 3162669 - [Q] Putative multicopper oxidases plsC CDS COG0204 3162744 3163481 - [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase 1651 parC CDS COG0188 3163715 3165973 - [L] Type IIA topoisomerase (DNA gyrase/topo II, 1652 ygiS CDS COG4166 3166111 3167718 - [E] ABC-type oligopeptide transport system, periplasmic component 1653 mqsA CDS COG2944 3167851 3168246 - [K] Predicted transcriptional regulator mqsR CDS ROG1466 3168248 3168544 - NA 1654 ygiV CDS COG3449 3168749 3169231 - [L] DNA gyrase inhibitor ygiW CDS COG3111 3169284 3169676 - [S] Uncharacterized conserved protein 1655 qseB CDS COG0745 3169828 3170487 + [TK] Response regulators consisting of a CheY-like qseC CDS COG0642 3170484 3171833 + [T] Signal transduction histidine kinase 1656 ygiZ CDS NA 3171879 3172211 - NA 1657 mdaB CDS COG2249 3172530 3173111 + [R] Putative NADPH-quinone reductase (modulator of drug ygiN CDS COG1359 3173142 3173456 + [S] Uncharacterized conserved protein 1658 parE CDS COG0187 3173504 3175396 - [L] Type IIA topoisomerase (DNA gyrase/topo II, yqiA CDS COG3150 3175425 3176006 - [R] Predicted esterase cpdA CDS COG1409 3176006 3176833 - [R] Predicted phosphohydrolases yqiB CDS COG3151 3176858 3177280 - [S] Uncharacterized protein conserved in bacteria nudF CDS COG0494 3177281 3177910 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1659 tolC CDS ROG3774 3178115 3179596 + NA 1660 ygiB CDS COG5463 3179744 3180415 + [S] Predicted integral membrane protein ygiC CDS COG0754 3180421 3181581 + [E] Glutathionylspermidine synthase 1661 ygiD CDS COG3384 3181619 3182434 - [S] Uncharacterized conserved protein 1662 zupT CDS COG0428 3182550 3183323 + [P] Predicted divalent heavy-metal cations transporter 1663 yqiD CDS ROG3817 3183381 3183551 - NA 1664 ribB CDS COG0108 3183813 3184466 - [H] 3,4-dihydroxy-2-butanone 4-phosphate synthase 1665 ubiK CDS COG2960 3184840 3185130 + [S] Uncharacterized protein conserved in bacteria 1666 ygiL CDS COG3539 3185414 3185965 + [NU] P pilus assembly protein, pilin FimA yqiG CDS NA 3186025 3186095 + NA 1667 yqiG_2 CDS NA 3187432 3189865 + NA 1668 insC5 CDS COG2963 3186187 3186552 + [L] Transposase and inactivated derivatives insD5 CDS COG2801 3186510 3187415 + [L] Transposase and inactivated derivatives 1669 yqiH CDS COG3121 3189881 3190630 + [NU] P pilus assembly protein, chaperone PapD yqiI CDS NA 3190632 3191696 + NA 1670 glgS CDS NA 3191739 3191939 - NA 1671 yqiJ CDS ROG1415 3192208 3192837 + NA yqiK CDS COG2268 3192864 3194525 + [S] Uncharacterized protein conserved in bacteria 1672 ibsD CDS NA 3194766 3194825 + NA 1673 ibsE CDS NA 3195141 3195200 + NA 1674 hldE CDS COG2870 3195320 3196753 - [M] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase glnE CDS COG1391 3196801 3199641 - [OT] Glutamine synthetase adenylyltransferase ygiF CDS COG3025 3199664 3200965 - [S] Uncharacterized conserved protein 1675 ygiM CDS COG3103 3201207 3201827 + [T] SH3 domain protein 1676 cca CDS COG0617 3201891 3203129 + [J] tRNA nucleotidyltransferase/poly(A) polymerase 1677 bacA CDS COG1968 3203310 3204131 - [V] Uncharacterized bacitracin resistance protein folB CDS COG1539 3204221 3204589 - [H] Dihydroneopterin aldolase 1678 plsY CDS COG0344 3204694 3205311 + [S] Predicted membrane protein 1679 ttdR CDS COG0583 3205324 3206256 - [K] Transcriptional regulator 1680 ttdA CDS COG1951 3206463 3207374 + [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class ttdB CDS COG1838 3207371 3207976 + [C] Tartrate dehydratase beta subunit/Fumarate hydratase class ttdT CDS COG0471 3208024 3209487 + [P] Di- and tricarboxylate transporters 1681 tsaD CDS COG0533 3209530 3210543 - [O] Metal-dependent proteases with possible chaperone activity 1682 rpsU CDS COG0828 3210781 3210996 + [J] Ribosomal protein S21 dnaG CDS COG0358 3211107 3212852 + [L] DNA primase (bacterial type) rpoD CDS COG0568 3213047 3214888 + [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 1683 mug CDS COG3663 3214967 3215473 - [L] G:T/U mismatch-specific DNA glycosylase 1684 ileX tRNA NA 3215598 3215673 + NA 1685 nfeF CDS COG2375 3215727 3216491 - [P] Siderophore-interacting protein 1686 nfeR CDS COG1695 3216779 3217402 + [K] Predicted transcriptional regulators 1687 aer CDS COG0840 3217556 3219076 - [NT] Methyl-accepting chemotaxis protein 1688 patA CDS COG4992 3219494 3220873 + [E] Ornithine/acetylornithine aminotransferase 1689 ygjH CDS COG0073 3220915 3221247 - [R] EMAP domain 1690 ebgR CDS COG1609 3221466 3222449 + [K] Transcriptional regulators ebgA CDS COG3250 3222633 3225725 + [G] Beta-galactosidase/beta-glucuronidase ebgC CDS COG2731 3225722 3226171 + [G] Beta-galactosidase, beta subunit ygjI CDS COG0531 3226234 3227667 + [E] Amino acid transporters 1691 ygjJ CDS NA 3227801 3228871 + NA ygjK CDS ROG3162 3228888 3231239 + NA 1692 fadH CDS COG1902 3231665 3233683 + [C] NADH:flavin oxidoreductases, Old Yellow Enzyme family 1693 higA CDS COG5499 3233728 3234144 - [K] Predicted transcription regulator containing HTH domain higB CDS COG4680 3234141 3234455 - [S] Uncharacterized protein conserved in bacteria 1694 rlmG CDS COG2813 3234739 3235875 - [J] 16S RNA G1207 methylase RsmC 1695 ygjP CDS COG1451 3235960 3236463 + [R] Predicted metal-dependent hydrolase 1696 ygjQ CDS COG2949 3236540 3237232 + [S] Uncharacterized membrane protein 1697 ygjR CDS COG0673 3237311 3238297 + [R] Predicted dehydrogenases and related proteins 1698 alx CDS COG0861 3238580 3239545 + [P] Membrane protein TerC, possibly involved in 1699 sstT CDS COG3633 3239944 3241188 + [E] Na+/serine symporter 1700 ygjV CDS ROG3859 3241193 3241744 - NA 1701 uxaA CDS COG2721 3241827 3243314 - [G] Altronate dehydratase uxaC CDS COG1904 3243329 3244741 - [G] Glucuronate isomerase 1702 exuT CDS COG2271 3245224 3246522 + [G] Sugar phosphate permease 1703 exuR CDS COG2186 3246652 3247428 + [K] Transcriptional regulators 1704 yqiM CDS NA 3247668 3247751 + NA yqjA CDS COG0586 3247773 3248435 + [S] Uncharacterized membrane-associated protein mzrA CDS COG0342 3248439 3248822 + [U] Preprotein translocase subunit SecD 1705 yqjC CDS ROG4156 3248969 3249337 + NA yqjD CDS COG4575 3249375 3249680 + [S] Uncharacterized conserved protein yqjE CDS COG5393 3249683 3250087 + [S] Predicted membrane protein yqjK CDS NA 3250077 3250376 + NA 1706 yqjF CDS COG2259 3250562 3250954 + [S] Predicted membrane protein yqjG CDS COG0435 3251024 3252010 + [O] Predicted glutathione S-transferase 1707 yhaH CDS COG3152 3252304 3252669 + [S] Predicted membrane protein yhaI CDS COG3152 3252911 3253267 + [S] Predicted membrane protein 1708 yhaJ CDS COG0583 3253318 3254214 - [K] Transcriptional regulator 1709 yhaK CDS COG1741 3254319 3255020 + [R] Pirin-related protein yhaL CDS COG1722 3255043 3255207 + [L] Exonuclease VII small subunit 1710 cyuA CDS COG3681 3255341 3256651 - [S] Uncharacterized conserved protein cyuP CDS COG0814 3256679 3258010 - [E] Amino acid permeases 1711 tdcG CDS COG1760 3258285 3259649 - [E] L-serine deaminase tdcF CDS COG0251 3259721 3260110 - [J] Putative translation initiation inhibitor, yjgF family tdcE CDS COG1882 3260124 3262418 - [C] Pyruvate-formate lyase tdcD CDS COG0282 3262452 3263660 - [C] Acetate kinase tdcC CDS COG0814 3263686 3265017 - [E] Amino acid permeases tdcB CDS COG1171 3265039 3266028 - [E] Threonine dehydratase tdcA CDS COG0583 3266127 3267065 - [K] Transcriptional regulator 1712 tdcR CDS NA 3267380 3267598 + NA 1713 yhaB CDS NA 3267854 3268393 + NA yhaC CDS NA 3268415 3269602 + NA 1714 garK CDS COG1929 3270625 3271770 - [G] Glycerate kinase garR CDS COG2084 3271867 3272751 - [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases garL CDS COG3836 3272787 3273557 - [G] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase garP CDS COG2271 3273573 3274907 - [G] Sugar phosphate permease 1715 garD CDS COG2721 3275282 3276853 + [G] Altronate dehydratase 1716 prlF CDS COG2002 3277002 3277337 + [K] Regulators of stationary/sporulation gene expression yhaV CDS ROG1645 3277337 3277801 + NA 1717 agaR CDS COG1349 3277856 3278665 - [KG] Transcriptional regulators of sugar metabolism 1718 kbaZ CDS COG4573 3278914 3280194 + [G] Predicted tagatose 6-phosphate kinase agaV CDS COG3444 3280217 3280690 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB 1719 agaS CDS COG2222 3281976 3283130 + [M] Predicted phosphosugar isomerases kbaY CDS COG0191 3283143 3284003 + [G] Fructose/tagatose bisphosphate aldolase agaB CDS COG3444 3284170 3284646 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB agaC CDS COG3715 3284685 3285488 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC agaD CDS COG3716 3285478 3286269 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID agaI CDS COG0363 3286270 3287025 + [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 1720 yraH CDS COG3539 3287426 3288010 + [NU] P pilus assembly protein, pilin FimA yraI CDS COG3121 3288090 3288785 + [NU] P pilus assembly protein, chaperone PapD yraJ CDS COG3188 3288814 3291330 + [NU] P pilus assembly protein, porin PapC yraK CDS COG3539 3291341 3292432 + [NU] P pilus assembly protein, pilin FimA 1721 rsmI CDS COG0313 3292475 3293335 - [R] Predicted methyltransferases 1722 lpoA CDS COG3107 3293400 3295436 + [R] Putative lipoprotein yraN CDS COG0792 3295394 3295789 + [L] Predicted endonuclease distantly related to archaeal diaA CDS COG0279 3295809 3296399 + [G] Phosphoheptose isomerase dolP CDS COG2823 3296409 3296984 + [R] Predicted periplasmic or secreted lipoprotein 1723 yraQ CDS COG0701 3297098 3298138 - [R] Predicted permeases 1724 yraR CDS ROG6630 3298211 3298846 - NA 1725 yhbO CDS COG0693 3298974 3299492 + [R] Putative intracellular protease/amidase 1726 yhbP CDS COG3787 3299472 3299915 - [S] Uncharacterized protein conserved in bacteria 1727 yhbQ CDS COG2827 3299966 3300268 + [L] Predicted endonuclease containing a URI domain 1728 yhbS CDS COG3153 3300255 3300758 - [R] Predicted acetyltransferase ubiT CDS COG3154 3300752 3301276 - [I] Putative lipid carrier protein 1729 ubiU CDS COG0826 3301485 3302480 + [O] Collagenase and related proteases ubiV CDS NA 3302489 3303367 + NA 1730 yhbW CDS COG2141 3303448 3304455 + [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 1731 mtr CDS COG0814 3304573 3305817 - [E] Amino acid permeases 1732 deaD CDS COG0513 3305971 3307860 - [LKJ] Superfamily II DNA and RNA helicases yrbN CDS NA 3307853 3307933 - NA 1733 nlpI CDS COG4785 3308040 3308924 - [R] Lipoprotein NlpI, contains TPR repeats pnp CDS COG1185 3309033 3311168 - [J] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) rpsO CDS COG0184 3311415 3311684 - [J] Ribosomal protein S15P/S13E truB CDS COG0130 3311833 3312777 - [J] Pseudouridine synthase rbfA CDS COG0858 3312777 3313178 - [J] Ribosome-binding factor A infB CDS COG0532 3313342 3316014 - [J] Translation initiation factor 2 (IF-2; GTPase) 1734 infB_2 CDS COG0532 3313342 3315543 - [J] Translation initiation factor 2 (IF-2; GTPase) 1735 infB_3 CDS COG0532 3313342 3315522 - [J] Translation initiation factor 2 (IF-2; GTPase) 1736 nusA CDS COG0195 3316039 3317526 - [K] Transcription elongation factor rimP CDS COG0779 3317554 3318006 - [S] Uncharacterized protein conserved in bacteria 1737 metY tRNA NA 3318213 3318289 - NA 1738 argG CDS COG0137 3318637 3319980 + [E] Argininosuccinate synthase 1739 yhbX CDS COG2194 3319988 3321613 - [R] Predicted membrane-associated, metal-dependent hydrolase 1740 leuU tRNA NA 3322072 3322158 - NA secG CDS COG1314 3322173 3322505 - [U] Preprotein translocase subunit SecG 1741 glmM CDS COG1109 3322733 3324070 - [G] Phosphomannomutase folP CDS COG0294 3324063 3324911 - [H] Dihydropteroate synthase and related enzymes ftsH CDS COG0465 3325001 3326935 - [O] ATP-dependent Zn proteases rlmE CDS COG0293 3327035 3327664 - [J] 23S rRNA methylase 1742 yhbY CDS COG1534 3327790 3328083 + [J] Predicted RNA-binding protein containing KH domain, 1743 greA CDS COG0782 3328239 3328715 - [K] Transcription elongation factor 1744 dacB CDS COG2027 3328963 3330396 + [M] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 1745 obgE CDS COG0536 3330582 3331754 - [R] Predicted GTPase yhbE CDS COG0697 3331770 3332735 - [GER] Permeases of the drug/metabolite transporter (DMT) 1746 rpmA CDS COG0211 3332862 3333119 - [J] Ribosomal protein L27 rplU CDS COG0261 3333140 3333451 - [J] Ribosomal protein L21 1747 ispB CDS COG0142 3333710 3334681 + [H] Geranylgeranyl pyrophosphate synthase 1748 sfsB CDS COG3423 3334909 3335187 + [K] Predicted transcriptional regulator 1749 murA CDS COG0766 3335235 3336494 - [M] UDP-N-acetylglucosamine enolpyruvyl transferase ibaG CDS COG5007 3336549 3336803 - [K] Predicted transcriptional regulator, BolA superfamily mlaB CDS COG3113 3336963 3337256 - [R] Predicted NTP binding protein (contains STAS mlaC CDS COG2854 3337256 3337891 - [Q] ABC-type transport system involved in resistance mlaD CDS COG1463 3337910 3338461 - [Q] ABC-type transport system involved in resistance mlaE CDS COG0767 3338466 3339248 - [Q] ABC-type transport system involved in resistance mlaF CDS COG1127 3339256 3340065 - [Q] ABC-type transport system involved in resistance 1750 yrbG CDS COG0530 3340275 3341252 + [P] Ca2+/Na+ antiporter kdsD CDS COG0794 3341266 3342252 + [M] Predicted sugar phosphate isomerase involved in kdsC CDS COG1778 3342273 3342839 + [R] Low specificity phosphatase (HAD superfamily) lptC CDS COG3117 3342836 3343411 + [S] Uncharacterized protein conserved in bacteria lptA CDS COG1934 3343380 3343937 + [S] Uncharacterized protein conserved in bacteria lptB CDS COG1137 3343944 3344669 + [R] ABC-type (unclassified) transport system, ATPase component rpoN CDS COG1508 3344717 3346150 + [K] DNA-directed RNA polymerase specialized sigma subunit, hpf CDS COG1544 3346173 3346460 + [J] Ribosome-associated protein Y (PSrp-1) ptsN CDS COG1762 3346578 3347069 + [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) rapZ CDS COG1660 3347115 3347969 + [R] Predicted P-loop-containing kinase npr CDS COG1925 3347966 3348238 + [G] Phosphotransferase system, HPr-related proteins 1751 yrbL CDS ROG3489 3348452 3349084 + NA 1752 mtgA CDS COG0744 3349081 3349809 - [M] Membrane carboxypeptidase (penicillin-binding protein) elbB CDS COG3155 3349806 3350459 - [Q] Uncharacterized protein involved in an early 1753 arcB CDS COG0642 3350689 3353025 - [T] Signal transduction histidine kinase 1754 yhcC CDS COG1242 3353121 3354050 - [R] Predicted Fe-S oxidoreductase 1755 gltB CDS COG0069 3354725 3359185 + [E] Glutamate synthase domain 2 gltD CDS COG0493 3359198 3360616 + [ER] NADPH-dependent glutamate synthase beta chain and 1756 gltF CDS COG2921 3361176 3361940 + [S] Uncharacterized conserved protein 1757 yhcA CDS COG3121 3362112 3362786 + [NU] P pilus assembly protein, chaperone PapD yhcD CDS COG3188 3362807 3365188 + [NU] P pilus assembly protein, porin PapC yhcE CDS NA 3365185 3365555 + NA 1758 yhcE_2 CDS NA 3366755 3366929 + NA 1759 insH10 CDS COG3039 3365702 3366682 - [L] Transposase and inactivated derivatives, IS5 family 1760 yhcF CDS NA 3366926 3367642 + NA 1761 yhcG CDS COG4804 3367827 3368954 + [S] Uncharacterized conserved protein 1762 nanQ CDS COG2731 3369014 3369478 - [G] Beta-galactosidase, beta subunit nanK CDS COG1940 3369475 3370350 - [KG] Transcriptional regulator/sugar kinase nanE CDS COG3010 3370347 3371036 - [G] Putative N-acetylmannosamine-6-phosphate epimerase nanT CDS COG0477 3371084 3372574 - [GEPR] Permeases of the major facilitator superfamily nanA CDS COG0329 3372683 3373576 - [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase nanR CDS COG2186 3373698 3374489 - [K] Transcriptional regulators 1763 dcuD CDS COG3069 3374869 3376236 + [C] C4-dicarboxylate transporter 1764 sspB CDS COG2969 3376279 3376776 - [R] Stringent starvation protein B sspA CDS ROG1850 3376782 3377420 - NA 1765 rpsI CDS COG0103 3377815 3378207 - [J] Ribosomal protein S9 rplM CDS COG0102 3378223 3378651 - [J] Ribosomal protein L13 1766 zapE CDS COG1485 3378870 3379997 - [R] Predicted ATPase 1767 zapG CDS COG3105 3380191 3380589 + [S] Uncharacterized protein conserved in bacteria 1768 degQ CDS COG0265 3380743 3382110 + [O] Trypsin-like serine proteases, typically periplasmic, contain degS CDS COG0265 3382200 3383267 + [O] Trypsin-like serine proteases, typically periplasmic, contain 1769 mdh CDS COG0039 3383330 3384268 - [C] Malate/lactate dehydrogenases 1770 argR CDS COG1438 3384703 3385173 + [K] Arginine repressor 1771 yhcN CDS ROG5490 3385538 3385801 + NA 1772 yhcO CDS COG2732 3385857 3386129 - [K] Barstar, RNAse (barnase) inhibitor 1773 aaeB CDS COG1289 3386221 3388188 - [S] Predicted membrane protein aaeA CDS COG1566 3388194 3389126 - [V] Multidrug resistance efflux pump aaeX CDS ROG4895 3389134 3389337 - NA 1774 aaeR CDS COG0583 3389520 3390449 + [K] Transcriptional regulator 1775 tldD CDS COG0312 3390583 3392028 - [R] Predicted Zn-dependent proteases and their inactivated 1776 yhdP CDS COG3164 3392458 3396258 - [S] Predicted membrane protein rng CDS COG1530 3396326 3397795 - [J] Ribonucleases G and E yhdE CDS COG0424 3397785 3398378 - [D] Nucleotide-binding protein implicated in inhibition of mreD CDS COG2891 3398387 3398875 - [M] Cell shape-determining protein mreC CDS COG1792 3398875 3399978 - [M] Cell shape-determining protein mreB CDS COG1077 3400044 3401087 - [D] Actin-like ATPase involved in cell morphogenesis 1777 csrD CDS COG3706 3401392 3403332 - [T] Response regulator containing a CheY-like receiver 1778 yhdH CDS COG0604 3403484 3404458 + [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases 1779 accB CDS COG0511 3405436 3405906 + [I] Biotin carboxyl carrier protein accC CDS COG0439 3405917 3407266 + [I] Biotin carboxylase 1780 yhdT CDS COG3924 3407375 3407617 + [S] Predicted membrane protein panF CDS COG4145 3407607 3409058 + [H] Na+/panthothenate symporter prmA CDS COG2264 3409070 3409951 + [J] Ribosomal protein L11 methylase 1781 dusB CDS COG0042 3410280 3411245 + [J] tRNA-dihydrouridine synthase fis CDS COG2901 3411271 3411567 + [KL] Factor for inversion stimulation Fis, transcriptional 1782 yhdJ CDS COG0863 3411653 3412537 + [L] DNA modification methylase 1783 yhdU CDS NA 3412621 3412800 + NA 1784 envR CDS COG1309 3412803 3413465 - [K] Transcriptional regulator 1785 acrE CDS COG0845 3413864 3415021 + [M] Membrane-fusion protein acrF CDS COG0841 3415033 3418137 + [V] Cation/multidrug efflux pump 1786 yhdV CDS COG5633 3418390 3418611 + [R] Predicted periplasmic lipoprotein 1787 yhdX CDS COG4597 3420134 3421315 + [E] ABC-type amino acid transport system, permease yhdY CDS COG0765 3421325 3422428 + [E] ABC-type amino acid transport system, permease yhdZ CDS COG1126 3422436 3423194 + [E] ABC-type polar amino acid transport system, 1788 rrfF rRNA NA 3423423 3423542 - NA thrV tRNA NA 3423580 3423655 - NA rrfD rRNA NA 3423668 3423787 - NA rrlD rRNA NA 3423880 3426783 - NA alaU tRNA NA 3426958 3427033 - NA ileU tRNA NA 3427076 3427152 - NA rrsD rRNA NA 3427221 3428762 - NA 1789 yrdA CDS COG0663 3429236 3429790 + [R] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 1790 yrdB CDS NA 3429766 3430023 - NA aroE CDS COG0169 3430020 3430838 - [E] Shikimate 5-dehydrogenase tsaC CDS COG0068 3430843 3431415 - [O] Hydrogenase maturation factor yrdD CDS COG0551 3431420 3431962 - [L] Zn-finger domain associated with topoisomerase type smg CDS COG2922 3431991 3432464 - [S] Uncharacterized protein conserved in bacteria smf CDS COG0758 3432436 3433560 - [LU] Predicted Rossmann fold nucleotide-binding protein involved 1791 def CDS COG0242 3433690 3434199 + [J] N-formylmethionyl-tRNA deformylase fmt CDS COG0223 3434214 3435161 + [J] Methionyl-tRNA formyltransferase rsmB CDS COG0144 3435207 3436496 + [J] tRNA and rRNA cytosine-C5-methylases trkA CDS COG0569 3436518 3437894 + [P] K+ transport systems, NAD-binding component 1792 mscL CDS COG1970 3438024 3438434 + [M] Large-conductance mechanosensitive channel 1793 arfA CDS COG3036 3438431 3438649 - [S] Uncharacterized protein conserved in bacteria zntR CDS COG0789 3438705 3439130 - [K] Predicted transcriptional regulators yhdN CDS ROG0120 3439141 3439509 - NA 1794 rplQ CDS COG0203 3439616 3439999 - [J] Ribosomal protein L17 rpoA CDS COG0202 3440040 3441029 - [K] DNA-directed RNA polymerase, alpha subunit/40 kD rpsD CDS COG0522 3441055 3441675 - [J] Ribosomal protein S4 and related proteins rpsK CDS COG0100 3441709 3442098 - [J] Ribosomal protein S11 rpsM CDS COG0099 3442115 3442471 - [J] Ribosomal protein S13 rpmJ CDS COG0257 3442618 3442734 - [J] Ribosomal protein L36 secY CDS COG0201 3442766 3444097 - [U] Preprotein translocase subunit SecY rplO CDS COG0200 3444105 3444539 - [J] Ribosomal protein L15 rpmD CDS COG1841 3444543 3444722 - [J] Ribosomal protein L30/L7E rpsE CDS COG0098 3444726 3445229 - [J] Ribosomal protein S5 rplR CDS COG0256 3445244 3445597 - [J] Ribosomal protein L18 rplF CDS COG0097 3445607 3446140 - [J] Ribosomal protein L6P/L9E rpsH CDS COG0096 3446153 3446545 - [J] Ribosomal protein S8 rpsN CDS COG0199 3446579 3446884 - [J] Ribosomal protein S14 rplE CDS COG0094 3446899 3447438 - [J] Ribosomal protein L5 rplX CDS COG0198 3447453 3447767 - [J] Ribosomal protein L24 rplN CDS COG0093 3447778 3448149 - [J] Ribosomal protein L14 rpsQ CDS COG0186 3448314 3448568 - [J] Ribosomal protein S17 rpmC CDS COG0255 3448568 3448759 - [J] Ribosomal protein L29 rplP CDS COG0197 3448759 3449169 - [J] Ribosomal protein L16/L10E rpsC CDS COG0092 3449182 3449883 - [J] Ribosomal protein S3 rplV CDS COG0091 3449901 3450233 - [J] Ribosomal protein L22 rpsS CDS COG0185 3450248 3450526 - [J] Ribosomal protein S19 rplB CDS COG0090 3450543 3451364 - [J] Ribosomal protein L2 rplW CDS COG0089 3451382 3451684 - [J] Ribosomal protein L23 rplD CDS COG0088 3451681 3452286 - [J] Ribosomal protein L4 rplC CDS COG0087 3452297 3452926 - [J] Ribosomal protein L3 rpsJ CDS COG0051 3452959 3453270 - [J] Ribosomal protein S10 1795 gspB CDS NA 3453508 3453927 - NA gspA CDS COG3409 3453929 3455398 - [M] Putative peptidoglycan-binding domain-containing protein 1796 gspC CDS COG3031 3455578 3456393 + [U] Type II secretory pathway, component PulC gspD CDS COG1450 3456377 3458329 + [NU] Type II secretory pathway, component PulD gspE CDS COG2804 3458339 3459820 + [NU] Type II secretory pathway, ATPase PulE/Tfp gspF CDS COG1459 3459817 3461013 + [NU] Type II secretory pathway, component PulF gspG CDS COG2165 3461023 3461460 + [NU] Type II secretory pathway, pseudopilin PulG gspH CDS COG4970 3461468 3461977 + [NU] Tfp pilus assembly protein FimT gspI CDS ROG4211 3461974 3462351 + NA gspJ CDS COG4795 3462344 3462931 + [U] Type II secretory pathway, component PulJ gspK CDS COG3156 3462924 3463907 + [U] Type II secretory pathway, component PulK gspL CDS COG3297 3463922 3465085 + [U] Type II secretory pathway, component PulL gspM CDS COG3149 3465082 3465543 + [U] Type II secretory pathway, component PulM gspO CDS COG1989 3465543 3466220 + [NOU] Type II secretory pathway, prepilin signal 1797 bfr CDS COG2193 3466249 3466725 - [P] Bacterioferritin (cytochrome b1) bfd CDS COG2906 3466797 3466991 - [P] Bacterioferritin-associated ferredoxin 1798 chiA CDS ROG1669 3467160 3469853 - NA 1799 tufA CDS COG0050 3470145 3471329 - [J] GTPases - translation elongation factors fusA CDS COG0480 3471400 3473514 - [J] Translation elongation factors (GTPases) rpsG CDS COG0049 3473542 3474081 - [J] Ribosomal protein S7 rpsL CDS COG0048 3474178 3474552 - [J] Ribosomal protein S12 1800 tusB CDS COG2168 3474678 3474965 - [P] Uncharacterized conserved protein involved in oxidation tusC CDS COG2923 3474973 3475332 - [P] Uncharacterized protein involved in the oxidation tusD CDS COG1553 3475332 3475718 - [P] Uncharacterized conserved protein involved in intracellular yheO CDS COG2964 3475718 3476440 - [S] Uncharacterized protein conserved in bacteria 1801 fkpA CDS COG0545 3476607 3477419 - [O] FKBP-type peptidyl-prolyl cis-trans isomerases 1 1802 slyX CDS COG2900 3477640 3477858 + [S] Uncharacterized protein conserved in bacteria 1803 slyD CDS COG1047 3477907 3478497 - [O] FKBP-type peptidyl-prolyl cis-trans isomerases 2 1804 yheV CDS COG3529 3478592 3478792 - [R] Predicted nucleic-acid-binding protein containing a Zn-ribbon kefB CDS COG0475 3478802 3480607 - [P] Kef-type K+ transport systems, membrane components kefG CDS COG2249 3480607 3481161 - [R] Putative NADPH-quinone reductase (modulator of drug 1805 yheS CDS COG0488 3481289 3483202 + [R] ATPase components of ABC transporters with yheT CDS COG0429 3483202 3484224 + [R] Predicted hydrolase of the alpha/beta-hydrolase fold yheU CDS COG3089 3484218 3484436 + [S] Uncharacterized protein conserved in bacteria prkB CDS COG3954 3484490 3485359 + [C] Phosphoribulokinase 1806 yhfA CDS COG1765 3485414 3485818 - [O] Predicted redox protein, regulator of disulfide 1807 crp CDS COG0664 3486120 3486752 + [T] cAMP-binding proteins - catabolite gene activator yhfK CDS COG1289 3486791 3488893 + [S] Predicted membrane protein 1808 argD CDS COG4992 3488960 3490180 - [E] Ornithine/acetylornithine aminotransferase yrfJ CDS NA 3490132 3490185 - NA 1809 pabA CDS COG0512 3490266 3490829 - [EH] Anthranilate/para-aminobenzoate synthases component II fic CDS COG2184 3490861 3491463 - [D] Protein involved in cell division yhfG CDS NA 3491453 3491620 - NA 1810 ppiA CDS COG0652 3491725 3492297 - [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin 1811 tsgA CDS COG0738 3492568 3493749 + [G] Fucose permease 1812 nirB CDS COG1251 3494011 3496554 + [C] NAD(P)H-nitrite reductase nirD CDS COG2146 3496551 3496877 + [PR] Ferredoxin subunits of nitrite reductase and nirC CDS COG2116 3497003 3497809 + [P] Formate/nitrite family of transporters cysG CDS COG0007 3497828 3499201 + [H] Uroporphyrinogen-III methylase 1813 yhfL CDS NA 3499448 3499615 + NA 1814 frlA CDS COG0531 3499910 3501247 + [E] Amino acid transporters frlB CDS COG2222 3501268 3502290 + [M] Predicted phosphosugar isomerases frlC CDS COG1082 3502340 3503170 + [G] Sugar phosphate isomerases/epimerases frlD CDS COG0524 3503167 3503952 + [G] Sugar kinases, ribokinase family frlR CDS COG2188 3504052 3504783 + [K] Transcriptional regulators 1815 yhfS CDS NA 3504935 3506020 - NA yhfT CDS ROG5012 3506032 3507336 - NA yhfU CDS ROG4472 3507348 3507701 - NA php CDS COG1735 3507712 3508590 - [R] Predicted metal-dependent hydrolase with the TIM-barrel yhfW CDS COG1015 3508587 3509813 - [G] Phosphopentomutase yhfX CDS COG3457 3509813 3510976 - [E] Predicted amino acid racemase 1816 yhfY CDS ROG7495 3511060 3511422 - NA yhfZ CDS ROG3679 3511439 3512344 - NA 1817 trpS CDS COG0180 3512634 3513638 - [J] Tryptophanyl-tRNA synthetase gph CDS COG0546 3513631 3514389 - [R] Predicted phosphatases rpe CDS COG0036 3514382 3515059 - [G] Pentose-5-phosphate-3-epimerase dam CDS COG0338 3515077 3515913 - [L] Site-specific DNA methylase damX CDS COG3266 3516020 3517306 - [S] Uncharacterized protein conserved in bacteria aroB CDS COG0337 3517398 3518486 - [E] 3-dehydroquinate synthetase aroK CDS COG0703 3518543 3519064 - [E] Shikimate kinase 1818 hofQ CDS COG4796 3519465 3520703 - [U] Type II secretory pathway, component HofQ hofP CDS NA 3520615 3521019 - NA hofO CDS NA 3521009 3521449 - NA hofN CDS COG3166 3521433 3521972 - [NU] Tfp pilus assembly protein PilN hofM CDS COG4972 3521972 3522751 - [NU] Tfp pilus assembly protein, ATPase PilM 1819 mrcA CDS COG5009 3522871 3525423 + [M] Membrane carboxypeptidase/penicillin-binding protein 1820 nudE CDS COG0494 3525589 3526149 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1821 igaA CDS NA 3526469 3528604 + NA 1822 yrfG CDS COG1011 3528669 3529337 + [R] Predicted hydrolase (HAD superfamily) hslR CDS COG1188 3529348 3529749 + [J] Ribosome-associated heat shock protein implicated in hslO CDS COG1281 3529774 3530652 + [O] Disulfide bond chaperones of the HSP33 1823 yhgE CDS ROG0893 3530715 3532439 - NA 1824 pck CDS COG1866 3532818 3534440 + [C] Phosphoenolpyruvate carboxykinase (ATP) 1825 envZ CDS COG2205 3534516 3535868 - [T] Osmosensitive K+ channel histidine kinase ompR CDS COG0745 3535865 3536584 - [TK] Response regulators consisting of a CheY-like 1826 greB CDS COG0782 3536812 3537288 + [K] Transcription elongation factor yhgF CDS COG2183 3537385 3539706 + [K] Transcriptional accessory protein 1827 feoA CDS COG1918 3540163 3540390 + [P] Fe2+ transport system protein A feoB CDS COG0370 3540407 3542728 + [P] Fe2+ transport system protein B feoC CDS ROG1872 3542728 3542964 + NA 1828 rpnA CDS COG5464 3543167 3544045 + [S] Uncharacterized conserved protein 1829 bioH CDS COG0596 3544074 3544844 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 1830 yhgH CDS COG1040 3544882 3545565 + [R] Predicted amidophosphoribosyltransferases nfuA CDS COG0694 3545624 3546199 + [O] Thioredoxin-like proteins and domains 1831 gntT CDS COG2610 3546559 3547875 + [GE] H+/gluconate symporter and related permeases 1832 malQ CDS COG1640 3547986 3550070 - [G] 4-alpha-glucanotransferase malP CDS COG0058 3550080 3552473 - [G] Glucan phosphorylase 1833 malT CDS COG2909 3553085 3555790 + [K] ATP-dependent transcriptional regulator 1834 rtcA CDS COG0430 3555833 3556849 - [A] RNA 3'-terminal phosphate cyclase rtcB CDS COG1690 3556853 3558079 - [S] Uncharacterized conserved protein 1835 rtcR CDS COG4650 3558268 3559866 + [KT] Sigma54-dependent transcription regulator containing an AAA-type 1836 glpG CDS COG0705 3560622 3561452 - [R] Uncharacterized membrane protein (homolog of Drosophila glpE CDS COG0607 3561497 3561823 - [P] Rhodanese-related sulfurtransferase 1837 glpD CDS COG0578 3562013 3563518 + [C] Glycerol-3-phosphate dehydrogenase 1838 yzgL CDS NA 3563724 3564005 - NA 1839 glgP CDS COG0058 3564134 3566581 - [G] Glucan phosphorylase glgA CDS COG0297 3566600 3568033 - [G] Glycogen synthase glgC CDS COG0448 3568033 3569328 - [G] ADP-glucose pyrophosphorylase glgX CDS COG1523 3569346 3571319 - [G] Type II secretory pathway, pullulanase PulA glgB CDS COG0296 3571316 3573502 - [G] 1,4-alpha-glucan branching enzyme 1840 yhgO CDS NA 3573660 3573701 - NA yhgP CDS NA 3573679 3573708 - NA 1841 asd CDS COG0136 3573775 3574878 - [E] Aspartate-semialdehyde dehydrogenase 1842 yhgN CDS COG2095 3575071 3575664 + [U] Multiple antibiotic transporter 1843 gntU CDS COG2610 3575721 3577061 - [GE] H+/gluconate symporter and related permeases gntK CDS COG3265 3577065 3577592 - [G] Gluconate kinase gntR CDS COG1609 3577731 3578726 - [K] Transcriptional regulators 1844 yhhW CDS COG1741 3578950 3579645 - [R] Pirin-related protein 1845 yhhX CDS COG0673 3579768 3580805 - [R] Predicted dehydrogenases and related proteins 1846 yhhY CDS COG0454 3581138 3581626 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1847 yhhZ CDS COG3157 3581863 3583041 + [S] Hemolysin-coregulated protein (uncharacterized) yrhA CDS NA 3583038 3583427 + NA 1848 yrhA_2 CDS NA 3584205 3584309 + NA insA6 CDS COG3677 3583483 3583758 + [L] Transposase and inactivated derivatives insB6 CDS COG1662 3583677 3584180 + [L] Transposase and inactivated derivatives, IS1 family 1849 yrhD CDS ROG7649 3584404 3584559 + NA 1850 yrhB CDS NA 3584759 3585043 + NA 1851 ggt CDS COG0405 3585081 3586823 - [E] Gamma-glutamyltransferase 1852 yhhA CDS NA 3586943 3587383 + NA 1853 ugpQ CDS COG0584 3587370 3588113 - [C] Glycerophosphoryl diester phosphodiesterase ugpC CDS COG3839 3588110 3589180 - [G] ABC-type sugar transport systems, ATPase components ugpE CDS COG0395 3589182 3590027 - [G] ABC-type sugar transport system, permease component ugpA CDS COG1175 3590024 3590911 - [G] ABC-type sugar transport systems, permease components ugpB CDS COG1653 3591009 3592325 - [G] ABC-type sugar transport system, periplasmic component 1854 livF CDS COG0410 3592724 3593437 - [E] ABC-type branched-chain amino acid transport systems, livG CDS COG0411 3593439 3594206 - [E] ABC-type branched-chain amino acid transport systems, livM CDS COG4177 3594203 3595480 - [E] ABC-type branched-chain amino acid transport system, livH CDS COG0559 3595477 3596403 - [E] Branched-chain amino acid ABC-type transport system, livK CDS COG0683 3596451 3597560 - [E] ABC-type branched-chain amino acid transport systems, 1855 panZ CDS NA 3597984 3598367 + NA 1856 livJ CDS COG0683 3598555 3599658 - [E] ABC-type branched-chain amino acid transport systems, 1857 rpoH CDS COG0568 3599929 3600783 - [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 1858 ftsX CDS COG2177 3601028 3602086 - [D] Cell division protein ftsE CDS COG2884 3602079 3602747 - [D] Predicted ATPase involved in cell division ftsY CDS COG0552 3602750 3604243 - [U] Signal recognition particle GTPase 1859 rsmD CDS COG0742 3604393 3604989 + [L] N6-adenine-specific methylase yhhL CDS COG3776 3604979 3605248 + [S] Predicted membrane protein 1860 yhhM CDS ROG6351 3605251 3605610 - NA 1861 yhhN CDS COG3714 3605751 3606377 + [S] Predicted membrane protein 1862 zntA CDS COG2217 3606451 3608649 + [P] Cation transport ATPase 1863 tusA CDS COG0425 3608751 3608996 - [O] Predicted redox protein, regulator of disulfide 1864 yhhQ CDS COG1738 3609217 3609882 + [S] Uncharacterized conserved protein 1865 dcrB CDS ROG1668 3609955 3610512 + NA 1866 yhhS CDS NA 3610516 3611733 - NA 1867 yhhT CDS COG0628 3611865 3612914 + [R] Predicted permease 1868 acpT CDS COG2091 3612969 3613556 + [H] Phosphopantetheinyl transferase 1869 nikA CDS COG0747 3613667 3615241 + [E] ABC-type dipeptide transport system, periplasmic component nikB CDS COG0601 3615241 3616185 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components nikC CDS COG1173 3616182 3617015 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components nikD CDS COG1123 3617015 3617779 + [R] ATPase components of various ABC-type transport nikE CDS COG1124 3617776 3618582 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component nikR CDS COG0864 3618588 3618989 + [K] Predicted transcriptional regulators containing the CopG/Arc/MetJ 1870 rhsB CDS COG3209 3619192 3623427 + [M] Rhs family protein yhhH CDS NA 3623399 3623782 + NA 1871 yhhI CDS COG5433 3624378 3625514 + [L] Transposase 1872 yhhJ CDS COG0842 3625679 3626803 - [V] ABC-type multidrug transport system, permease component rbbA CDS COG1131 3626803 3629538 - [V] ABC-type multidrug transport system, ATPase component yhiI CDS COG1566 3629535 3630602 - [V] Multidrug resistance efflux pump 1873 yhiY CDS NA 3630665 3630778 - NA 1874 yhiJ CDS NA 3630968 3632590 - NA 1875 yhiM CDS ROG5761 3634841 3635893 + NA 1876 yhiN CDS COG2081 3636208 3637410 - [R] Predicted flavoproteins 1877 pitA CDS COG0306 3637642 3639141 + [P] Phosphate/sulphate permeases 1878 uspB CDS NA 3639385 3639720 - NA 1879 uspA CDS COG0589 3640111 3640545 + [T] Universal stress protein UspA and related 1880 yriA CDS NA 3640612 3640686 - NA yriB CDS NA 3640643 3640696 - NA 1881 dtpB CDS COG3104 3640862 3642331 + [E] Dipeptide/tripeptide permease 1882 rsmJ CDS NA 3642380 3643132 - NA prlC CDS COG0339 3643140 3645182 - [E] Zn-dependent oligopeptidases 1883 rlmJ CDS COG2961 3645385 3646227 + [R] Protein involved in catabolism of external 1884 gor CDS COG1249 3646299 3647651 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 1885 dinQ CDS NA 3647705 3647788 - NA 1886 arsR CDS COG0640 3648528 3648881 + [K] Predicted transcriptional regulators arsB CDS COG1055 3648935 3650224 + [P] Na+/H+ antiporter NhaD and related arsenite arsC CDS COG1393 3650237 3650662 + [P] Arsenate reductase and related proteins, glutaredoxin 1887 yhiS CDS COG1357 3651291 3652036 + [S] Uncharacterized low-complexity proteins 1888 yhiS_2 CDS NA 3653236 3653713 + NA 1889 insH11 CDS COG3039 3652182 3653162 - [L] Transposase and inactivated derivatives, IS5 family 1890 slp CDS COG3065 3653961 3654527 + [M] Starvation-inducible outer membrane lipoprotein 1891 dctR CDS NA 3654683 3655213 + NA 1892 yhiD CDS COG1285 3655255 3655902 - [S] Uncharacterized membrane protein 1893 hdeB CDS NA 3655966 3656292 - NA 1894 hdeA CDS ROG0403 3656408 3656740 - NA 1895 hdeD CDS COG3247 3656995 3657567 + [S] Uncharacterized conserved protein 1896 gadE CDS ROG5730 3658366 3658893 + NA 1897 mdtE CDS COG0845 3659232 3660389 + [M] Membrane-fusion protein mdtF CDS COG0841 3660414 3663527 + [V] Cation/multidrug efflux pump 1898 gadW CDS COG2207 3663890 3664618 - [K] AraC-type DNA-binding domain-containing proteins gadX CDS COG2207 3664986 3665810 - [K] AraC-type DNA-binding domain-containing proteins 1899 gadA CDS COG0076 3666180 3667580 - [E] Glutamate decarboxylase and related PLP-dependent proteins 1900 ccp CDS COG1858 3667791 3669188 - [P] Cytochrome c peroxidase 1901 treF CDS COG1626 3669592 3671241 + [G] Neutral trehalase 1902 yhjB CDS COG2197 3671292 3671894 - [TK] Response regulator containing a CheY-like receiver 1903 rcdB CDS COG0583 3672414 3673313 + [K] Transcriptional regulator yhjD CDS COG1295 3673362 3674375 + [S] Predicted membrane protein 1904 yhjE CDS COG0477 3674786 3676108 + [GEPR] Permeases of the major facilitator superfamily 1905 yhjG CDS COG2982 3676290 3678350 - [M] Uncharacterized protein involved in outer membrane 1906 pdeH CDS COG2200 3678420 3679187 - [T] FOG: EAL domain 1907 kdgK CDS COG0524 3679419 3680348 + [G] Sugar kinases, ribokinase family 1908 yhjJ CDS COG0612 3680444 3681940 - [R] Predicted Zn-dependent peptidases 1909 dctA CDS COG1301 3682161 3683447 - [C] Na+/H+-dicarboxylate symporters 1910 pdeK CDS COG2200 3683630 3685618 - [T] FOG: EAL domain bcsC CDS COG0457 3685700 3689173 - [R] FOG: TPR repeat bcsZ CDS COG3405 3689155 3690261 - [G] Endoglucanase Y bcsB CDS ROG0761 3690268 3692607 - NA bcsA CDS COG1215 3692618 3695236 - [M] Glycosyltransferases, probably involved in cell wall 1911 yhjR CDS NA 3695997 3696185 - NA 1912 bcsE CDS NA 3696458 3698029 + NA bcsF CDS NA 3698026 3698217 + NA bcsG CDS ROG4317 3698214 3699893 + NA 1913 ldrD CDS NA 3699980 3700087 - NA 1914 yhjV CDS COG0814 3700563 3701834 + [E] Amino acid permeases 1915 dppF CDS COG4608 3701864 3702868 - [E] ABC-type oligopeptide transport system, ATPase component dppD CDS COG0444 3702865 3703848 - [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component dppC CDS COG1173 3703859 3704761 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components dppB CDS COG0601 3704771 3705790 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components dppA CDS COG0747 3706098 3707705 - [E] ABC-type dipeptide transport system, periplasmic component 1916 proK tRNA NA 3708616 3708692 - NA 1917 eptB CDS COG2194 3708784 3710475 - [R] Predicted membrane-associated, metal-dependent hydrolase 1918 yhjX CDS COG2211 3710799 3712007 - [G] Na+/melibiose symporter and related transporters 1919 yhjY CDS COG5571 3712236 3712934 - [N] Autotransporter protein or domain, integral membrane 1920 tag CDS COG2818 3713092 3713655 + [L] 3-methyladenine DNA glycosylase yiaC CDS COG0454 3713652 3714092 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1921 bisC CDS COG0243 3714061 3716394 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 1922 yiaD CDS COG2885 3716547 3717206 + [M] Outer membrane protein and related peptidoglycan-associated 1923 ghrB CDS COG1052 3717310 3718284 + [CHR] Lactate dehydrogenase and related dehydrogenases 1924 yiaF CDS NA 3718334 3719044 - NA 1925 yiaG CDS COG2944 3719478 3719768 + [K] Predicted transcriptional regulator 1926 cspA CDS COG1278 3720049 3720261 + [K] Cold shock proteins 1927 ysaE CDS NA 3720400 3720471 + NA 1928 hokA CDS NA 3720448 3720600 - NA 1929 insJ CDS COG2963 3720680 3721201 + [L] Transposase and inactivated derivatives insK CDS COG2801 3721198 3722049 + [L] Transposase and inactivated derivatives 1930 glyS CDS COG0751 3722328 3724397 - [J] Glycyl-tRNA synthetase, beta subunit glyQ CDS COG0752 3724407 3725318 - [J] Glycyl-tRNA synthetase, alpha subunit 1931 ysaB CDS NA 3725413 3725712 - NA 1932 wecH CDS COG3274 3725887 3726882 + [S] Uncharacterized protein conserved in bacteria 1933 yiaA CDS COG4682 3726924 3727361 - [S] Predicted membrane protein yiaB CDS COG4682 3727407 3727748 - [S] Predicted membrane protein 1934 xylB CDS COG1070 3727917 3729371 - [G] Sugar (pentulose and hexulose) kinases xylA CDS COG2115 3729443 3730765 - [G] Xylose isomerase 1935 xylF CDS COG4213 3731131 3732123 + [G] ABC-type xylose transport system, periplasmic component xylG CDS COG1129 3732201 3733742 + [G] ABC-type sugar transport system, ATPase component xylH CDS COG4214 3733720 3734901 + [G] ABC-type xylose transport system, permease component 1936 xylR CDS COG2207 3734979 3736157 + [K] AraC-type DNA-binding domain-containing proteins 1937 bax CDS COG2992 3736353 3737177 - [R] Uncharacterized FlgJ-related protein baxL CDS NA 3737177 3737203 - NA 1938 malS CDS COG0366 3737497 3739527 + [G] Glycosidases 1939 avtA CDS COG3977 3739705 3740958 + [E] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase 1940 ysaA CDS COG1142 3741109 3741582 - [C] Fe-S-cluster-containing hydrogenase components 2 1941 plaR CDS COG1414 3741684 3742532 - [K] Transcriptional regulator 1942 yiaK CDS COG2055 3742733 3743731 + [C] Malate/L-lactate dehydrogenases yiaL CDS COG2731 3743743 3744210 + [G] Beta-galactosidase, beta subunit yiaM CDS COG3090 3744328 3744801 + [G] TRAP-type C4-dicarboxylate transport system, small permease yiaN CDS COG1593 3744804 3746081 + [G] TRAP-type C4-dicarboxylate transport system, large permease yiaO CDS COG1638 3746094 3747080 + [G] TRAP-type C4-dicarboxylate transport system, periplasmic component lyxK CDS COG1070 3747084 3748580 + [G] Sugar (pentulose and hexulose) kinases sgbH CDS COG0269 3748577 3749239 + [G] 3-hexulose-6-phosphate synthase and related proteins sgbU CDS COG3623 3749232 3750092 + [G] Putative L-xylulose-5-phosphate 3-epimerase sgbE CDS COG0235 3750086 3750781 + [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 1943 yiaT CDS COG3713 3751128 3751868 - [M] Outer membrane protein V 1944 yiaU CDS COG0583 3751992 3752966 + [K] Transcriptional regulator 1945 yiaV CDS COG1566 3752963 3754099 - [V] Multidrug resistance efflux pump yiaW CDS ROG2279 3754105 3754428 - NA 1946 aldB CDS COG1012 3754973 3756511 - [C] NAD-dependent aldehyde dehydrogenases yiaY CDS COG1454 3756676 3757827 - [C] Alcohol dehydrogenase, class IV 1947 selB CDS COG3276 3758017 3759861 - [J] Selenocysteine-specific translation elongation factor selA CDS COG1921 3759858 3761249 - [E] Selenocysteine synthase [seryl-tRNASer selenium transferase] 1948 yibF CDS ROG5032 3761347 3761955 - NA 1949 rhsA CDS COG3209 3762183 3766316 + [M] Rhs family protein yibA CDS COG1413 3766337 3767179 + [C] FOG: HEAT repeat 1950 yibG CDS COG0790 3768177 3768638 + [R] FOG: TPR repeat, SEL1 subfamily 1951 yibV CDS NA 3769345 3769680 + NA 1952 yibH CDS COG1566 3770243 3771379 - [V] Multidrug resistance efflux pump yibI CDS ROG2279 3771382 3771744 - NA 1953 mtlA CDS COG2213 3772281 3774194 + [G] Phosphotransferase system, mannitol-specific IIBC component mtlD CDS COG0246 3774424 3775572 + [G] Mannitol-1-phosphate/altronate dehydrogenases mtlR CDS COG3722 3775572 3776159 + [K] Transcriptional regulator 1954 yibT CDS NA 3776171 3776380 - NA 1955 yibL CDS ROG8523 3776665 3777027 + NA 1956 lldP CDS COG1620 3777399 3779054 + [C] L-lactate permease lldR CDS COG2186 3779054 3779830 + [K] Transcriptional regulators lldD CDS COG1304 3779827 3781017 + [C] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy trmL CDS COG0219 3781215 3781688 + [J] Predicted rRNA methylase (SpoU class) 1957 cysE CDS COG1045 3781741 3782562 - [E] Serine acetyltransferase gpsA CDS COG0240 3782642 3783661 - [C] Glycerol-3-phosphate dehydrogenase secB CDS COG1952 3783661 3784128 - [U] Preprotein translocase subunit SecB grxC CDS COG0695 3784191 3784442 - [O] Glutaredoxin and related proteins yibN CDS COG0607 3784584 3785015 - [P] Rhodanese-related sulfurtransferase 1958 gpmM CDS COG0696 3785260 3786804 + [G] Phosphoglyceromutase envC CDS COG4942 3786838 3788097 + [D] Membrane-bound metallopeptidase yibQ CDS COG2861 3788101 3789060 + [S] Uncharacterized protein conserved in bacteria 1959 waaH CDS COG0463 3789047 3790081 - [M] Glycosyltransferases involved in cell wall biogenesis 1960 tdh CDS COG1063 3790320 3791345 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases kbl CDS COG0156 3791355 3792551 - [H] 7-keto-8-aminopelargonate synthetase and related enzymes 1961 htrL CDS NA 3792826 3793683 - NA 1962 rfaD CDS COG0451 3793987 3794919 + [MG] Nucleoside-diphosphate-sugar epimerases waaF CDS COG0859 3794929 3795975 + [M] ADP-heptose:LPS heptosyltransferase waaC CDS COG0859 3795979 3796938 + [M] ADP-heptose:LPS heptosyltransferase waaL CDS COG3307 3796948 3798207 + [M] Lipid A core - O-antigen ligase 1963 yibX CDS NA 3797772 3798014 - NA yibX_2 CDS NA 3797772 3797846 - NA 1964 yibY CDS NA 3798039 3798149 - NA 1965 waaU CDS COG0859 3798239 3799312 - [M] ADP-heptose:LPS heptosyltransferase waaZ CDS NA 3799345 3800196 - NA 1966 waaY CDS ROG3683 3800267 3800965 - NA waaJ CDS COG1442 3800983 3801999 - [M] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases waaO CDS COG1442 3802039 3803058 - [M] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases waaB CDS COG0438 3803058 3804137 - [M] Glycosyltransferase waaS CDS ROG3667 3804181 3805116 - NA waaP CDS ROG1796 3805153 3805950 - NA waaG CDS COG0438 3805943 3807067 - [M] Glycosyltransferase waaQ CDS COG0859 3807064 3808098 - [M] ADP-heptose:LPS heptosyltransferase 1967 waaA CDS COG1519 3808540 3809817 + [M] 3-deoxy-D-manno-octulosonic-acid transferase coaD CDS COG0669 3809825 3810304 + [H] Phosphopantetheine adenylyltransferase 1968 mutM CDS COG0266 3810343 3811152 - [L] Formamidopyrimidine-DNA glycosylase rpmG CDS COG0267 3811250 3811417 - [J] Ribosomal protein L33 rpmB CDS COG0227 3811438 3811674 - [J] Ribosomal protein L28 yicR CDS COG2003 3811891 3812559 - [L] DNA repair proteins 1969 dfp CDS COG0452 3812731 3813951 + [H] Phosphopantothenoylcysteine synthetase/decarboxylase dut CDS COG0756 3813929 3814387 + [F] dUTPase 1970 slmA CDS COG1309 3814494 3815090 + [K] Transcriptional regulator 1971 pyrE CDS COG0461 3815127 3815768 - [F] Orotate phosphoribosyltransferase rph CDS COG0689 3815863 3816549 - [J] RNase PH 1972 yicC CDS COG1561 3816676 3817539 + [S] Uncharacterized stress-induced protein 1973 dinD CDS ROG0424 3817760 3818584 + NA 1974 yicG CDS COG2860 3818874 3819491 + [S] Predicted membrane protein 1975 ligB CDS COG0272 3819488 3821170 - [L] NAD-dependent DNA ligase (contains BRCT domain 1976 gmk CDS COG0194 3821428 3822051 + [F] Guanylate kinase rpoZ CDS COG1758 3822106 3822381 + [K] DNA-directed RNA polymerase, subunit K/omega spoT CDS COG0317 3822400 3824508 + [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases trmH CDS COG0566 3824515 3825204 + [J] rRNA methylases recG CDS COG1200 3825210 3827291 + [LK] RecG-like helicase 1977 gltS CDS COG0786 3827460 3828665 - [E] Na+/glutamate symporter 1978 xanP CDS COG2233 3828945 3830336 + [F] Xanthine/uracil permeases 1979 yicH CDS NA 3830457 3832166 + NA 1980 yicI CDS COG1501 3832219 3834537 - [G] Alpha-glucosidases, family 31 of glycosyl hydrolases yicJ CDS COG2211 3834547 3835929 - [G] Na+/melibiose symporter and related transporters 1981 selC tRNA NA 3836222 3836316 + NA 1982 setC CDS NA 3836953 3838137 + NA 1983 yicL CDS COG0697 3838248 3839171 + [GER] Permeases of the drug/metabolite transporter (DMT) 1984 yicU CDS NA 3838642 3838701 - NA 1985 nlpA CDS COG1464 3839175 3839993 - [P] ABC-type metal ion transport system, periplasmic 1986 yicS CDS NA 3840215 3840508 + NA 1987 nepI CDS COG2814 3840549 3841739 - [G] Arabinose efflux permease 1988 yicN CDS NA 3841950 3842402 - NA adeQ CDS COG2252 3842455 3843789 - [R] Permeases 1989 adeD CDS COG1001 3843964 3845730 + [F] Adenine deaminase 1990 uhpT CDS COG2271 3845776 3847167 - [G] Sugar phosphate permease uhpC CDS COG2271 3847305 3848624 - [G] Sugar phosphate permease uhpB CDS COG3851 3848634 3850136 - [T] Signal transduction histidine kinase, glucose-6-phosphate specific uhpA CDS COG2197 3850136 3850726 - [TK] Response regulator containing a CheY-like receiver ilvN CDS COG0440 3850802 3851092 - [E] Acetolactate synthase, small (regulatory) subunit ilvB CDS COG0028 3851096 3852784 - [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate 1991 ivbL CDS NA 3852890 3852988 - NA 1992 tisB CDS NA 3853553 3853642 + NA 1993 ysdE CDS NA 3853766 3853840 - NA 1994 emrD CDS COG0477 3853922 3855106 + [GEPR] Permeases of the major facilitator superfamily 1995 yidF CDS COG0641 3855114 3855611 - [R] Arylsulfatase regulator (Fe-S oxidoreductase) yidG CDS NA 3855608 3855970 - NA yidH CDS COG2149 3855960 3856307 - [S] Predicted membrane protein 1996 yidI CDS ROG0803 3856415 3856864 + NA 1997 yidJ CDS COG3119 3856911 3858404 - [P] Arylsulfatase A and related enzymes yidK CDS COG4146 3858401 3860116 - [R] Predicted symporter 1998 yidL CDS COG2207 3860283 3861176 + [K] AraC-type DNA-binding domain-containing proteins 1999 glvB CDS COG1264 3861987 3862472 - [G] Phosphotransferase system IIB components glvC CDS COG1263 3862497 3863603 - [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 2000 yidP CDS COG2188 3863899 3864615 + [K] Transcriptional regulators 2001 yidE CDS COG2985 3864612 3866273 - [R] Predicted permease 2002 ibpB CDS COG0071 3866469 3866897 - [O] Molecular chaperone (small heat shock protein) ibpA CDS COG0071 3867009 3867422 - [O] Molecular chaperone (small heat shock protein) 2003 yidQ CDS COG5645 3867728 3868060 + [R] Predicted periplasmic lipoprotein 2004 yidR CDS COG1506 3868062 3869309 - [E] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 2005 cbrA CDS COG0644 3869377 3870441 + [C] Dehydrogenases (flavoproteins) 2006 dgoT CDS COG2271 3870438 3871730 - [G] Sugar phosphate permease 2007 dgoD CDS COG4948 3871850 3872998 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of dgoA CDS COG0800 3872995 3873612 - [G] 2-keto-3-deoxy-6-phosphogluconate aldolase dgoK CDS COG3734 3873596 3874474 - [G] 2-keto-3-deoxy-galactonokinase dgoR CDS COG2186 3874471 3875160 - [K] Transcriptional regulators 2008 yidX CDS NA 3875438 3876094 + NA 2009 yidA CDS COG0561 3876140 3876952 - [R] Predicted hydrolases of the HAD superfamily 2010 yidB CDS COG3753 3877067 3877465 - [S] Uncharacterized protein conserved in bacteria 2011 gyrB CDS COG0187 3877705 3880119 - [L] Type IIA topoisomerase (DNA gyrase/topo II, recF CDS COG1195 3880148 3881221 - [L] Recombinational DNA repair ATPase (RecF pathway) dnaN CDS COG0592 3881221 3882321 - [L] DNA polymerase sliding clamp subunit (PCNA dnaA CDS COG0593 3882326 3883729 - [L] ATPase involved in DNA replication initiation 2012 ysdD CDS NA 3884026 3884106 + NA 2013 rpmH CDS ROG3844 3884336 3884476 + NA rnpA CDS COG0594 3884493 3884852 + [J] RNase P protein component yidD CDS COG0759 3884816 3885073 + [S] Uncharacterized conserved protein yidC CDS COG0706 3885076 3886722 + [U] Preprotein translocase subunit YidC mnmE CDS COG0486 3886828 3888192 + [R] Predicted GTPase 2014 tnaC CDS NA 3888435 3888509 + NA 2015 tnaA CDS COG3033 3888730 3890145 + [E] Tryptophanase tnaB CDS COG0814 3890236 3891483 + [E] Amino acid permeases 2016 mdtL CDS NA 3891615 3892790 + NA yidZ CDS COG0583 3892765 3893724 + [K] Transcriptional regulator 2017 yieE CDS COG2091 3893881 3894630 + [H] Phosphopantetheinyl transferase yieF CDS COG0431 3894652 3895218 + [R] Predicted flavoprotein 2018 adeP CDS COG2252 3895272 3896609 - [R] Permeases 2019 yieH CDS COG0637 3896774 3897439 + [R] Predicted phosphatase/phosphohexomutase 2020 cbrB CDS NA 3897506 3897973 + NA cbrC CDS COG3196 3898022 3898609 + [S] Uncharacterized protein conserved in bacteria 2021 yieK CDS COG0363 3898671 3899393 - [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase yieL CDS COG2382 3899408 3900577 - [P] Enterochelin esterase and related enzymes bglH CDS COG4580 3900604 3902220 - [G] Maltoporin (phage lambda and maltose receptor) bglB CDS COG2723 3902289 3903701 - [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase bglF CDS COG2190 3903720 3905597 - [G] Phosphotransferase system IIA components bglG CDS COG3711 3905731 3906567 - [K] Transcriptional antiterminator 2022 phoU CDS COG0704 3906853 3907578 - [P] Phosphate uptake regulator pstB CDS COG1117 3907593 3908366 - [P] ABC-type phosphate transport system, ATPase component pstA CDS COG0581 3908549 3909439 - [P] ABC-type phosphate transport system, permease component pstC CDS COG0573 3909439 3910398 - [P] ABC-type phosphate transport system, permease component pstS CDS COG0226 3910485 3911525 - [P] ABC-type phosphate transport system, periplasmic component 2023 glmS CDS COG0449 3911839 3913668 - [M] Glucosamine 6-phosphate synthetase, contains amidotransferase and glmU CDS COG1207 3913830 3915200 - [M] N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch atpC CDS COG0355 3915553 3915972 - [C] F0F1-type ATP synthase, epsilon subunit (mitochondrial atpD CDS COG0055 3915993 3917375 - [C] F0F1-type ATP synthase, beta subunit atpG CDS COG0224 3917402 3918265 - [C] F0F1-type ATP synthase, gamma subunit atpA CDS COG0056 3918316 3919857 - [C] F0F1-type ATP synthase, alpha subunit atpH CDS COG0712 3919870 3920403 - [C] F0F1-type ATP synthase, delta subunit (mitochondrial atpF CDS COG0711 3920418 3920888 - [C] F0F1-type ATP synthase, subunit b atpE CDS COG0636 3920950 3921189 - [C] F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, atpB CDS COG0356 3921236 3922051 - [C] F0F1-type ATP synthase, subunit a atpI CDS COG3312 3922060 3922440 - [C] F0F1-type ATP synthase, subunit I 2024 rsmG CDS COG0357 3923057 3923680 - [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial mnmG CDS COG0445 3923744 3925633 - [D] NAD/FAD-utilizing enzyme apparently involved in cell 2025 mioC CDS COG0716 3926012 3926455 - [C] Flavodoxins 2026 asnC CDS COG1522 3926545 3927003 - [K] Transcriptional regulators 2027 asnA CDS COG2502 3927155 3928147 + [E] Asparagine synthetase A 2028 viaA CDS COG2425 3928152 3929603 - [R] Uncharacterized protein containing a von Willebrand ravA CDS NA 3929597 3931093 - NA 2029 kup CDS COG3158 3931316 3933184 + [P] K+ transporter 2030 rbsD CDS COG1869 3933351 3933770 + [G] ABC-type ribose transport system, auxiliary component rbsA CDS COG1129 3933778 3935283 + [G] ABC-type sugar transport system, ATPase component rbsC CDS COG1172 3935288 3936253 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components rbsB CDS COG1879 3936278 3937168 + [G] ABC-type sugar transport system, periplasmic component rbsK CDS COG0524 3937294 3938223 + [G] Sugar kinases, ribokinase family rbsR CDS COG1609 3938227 3939219 + [K] Transcriptional regulators 2031 hsrA CDS COG0477 3939185 3940612 - [GEPR] Permeases of the major facilitator superfamily yieP CDS COG2186 3940635 3941327 - [K] Transcriptional regulators 2032 rrsC rRNA NA 3941808 3943349 + NA gltU tRNA NA 3943435 3943510 + NA rrlC rRNA NA 3943704 3946607 + NA rrfC rRNA NA 3946700 3946819 + NA aspT tRNA NA 3946872 3946948 + NA trpT tRNA NA 3946957 3947032 + NA 2033 hdfR CDS COG0583 3947128 3947967 - [K] Transcriptional regulator 2034 maoP CDS COG3085 3948086 3948424 + [S] Uncharacterized protein conserved in bacteria 2035 yifB CDS COG0606 3948449 3949969 - [O] Predicted ATPase with chaperone activity 2036 ilvL CDS NA 3950322 3950420 + NA 2037 ilvX CDS NA 3950507 3950557 + NA 2038 ilvM CDS COG3978 3952201 3952464 + [S] Acetolactate synthase (isozyme II), small (regulatory) ilvE CDS COG0115 3952484 3953413 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase ilvD CDS COG0129 3953478 3955328 + [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase ilvA CDS COG1171 3955331 3956875 + [E] Threonine dehydratase 2039 ilvY CDS COG0583 3956927 3957820 - [K] Transcriptional regulator 2040 ilvC CDS COG0059 3957970 3959445 + [EH] Ketol-acid reductoisomerase 2041 ppiC CDS COG0760 3959532 3959813 - [O] Parvulin-like peptidyl-prolyl isomerase 2042 rep CDS COG0210 3960677 3962698 + [L] Superfamily I DNA and RNA helicases 2043 gpp CDS COG0248 3962745 3964229 - [FP] Exopolyphosphatase rhlB CDS COG0513 3964365 3965630 - [LKJ] Superfamily II DNA and RNA helicases 2044 trxA CDS COG0526 3965761 3966090 + [OC] Thiol-disulfide isomerase and thioredoxins 2045 rhoL CDS NA 3966231 3966332 + NA 2046 rho CDS COG1158 3966417 3967676 + [K] Transcription termination factor 2047 rfe CDS NA 3967916 3969019 + NA wzzE CDS COG3765 3969031 3970077 + [M] Chain length determinant protein wecB CDS COG0381 3970133 3971263 + [M] UDP-N-acetylglucosamine 2-epimerase wecC CDS COG0677 3971260 3972522 + [M] UDP-N-acetyl-D-mannosaminuronate dehydrogenase rffG CDS COG1088 3972522 3973589 + [M] dTDP-D-glucose 4,6-dehydratase rffH CDS COG1209 3973608 3974489 + [M] dTDP-glucose pyrophosphorylase rffC CDS COG0454 3974467 3975141 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases wecE CDS COG0399 3975146 3976276 + [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved wzxE CDS COG2244 3976278 3977528 + [R] Membrane protein involved in the export wecF CDS ROG4451 3977525 3978604 + NA wzyE CDS NA 3978601 3979953 + NA rffM CDS COG1922 3979956 3980696 + [M] Teichoic acid biosynthesis proteins 2048 yifK CDS COG1113 3980887 3982272 + [E] Gamma-aminobutyrate permease and related permeases 2049 argX tRNA NA 3982375 3982451 + NA hisR tRNA NA 3982509 3982585 + NA leuT tRNA NA 3982606 3982692 + NA proM tRNA NA 3982735 3982811 + NA 2050 aslB CDS COG0641 3982958 3984193 + [R] Arylsulfatase regulator (Fe-S oxidoreductase) 2051 aslA CDS COG3119 3984352 3986007 - [P] Arylsulfatase A and related enzymes 2052 hemY CDS COG3071 3986686 3987882 - [H] Uncharacterized enzyme of heme biosynthesis hemX CDS COG2959 3987885 3989066 - [H] Uncharacterized enzyme of heme biosynthesis hemD CDS COG1587 3989088 3989828 - [H] Uroporphyrinogen-III synthase hemC CDS COG0181 3989825 3990766 - [H] Porphobilinogen deaminase 2053 cyaA CDS COG3072 3991153 3993699 + [F] Adenylate cyclase 2054 cyaY CDS COG1965 3993739 3994059 - [P] Protein implicated in iron transport, frataxin 2055 yzcX CDS NA 3993850 3994335 + NA 2056 yifL CDS COG5567 3994522 3994725 + [N] Predicted small periplasmic lipoprotein dapF CDS COG0253 3994762 3995586 + [E] Diaminopimelate epimerase yigA CDS COG3159 3995583 3996290 + [S] Uncharacterized protein conserved in bacteria xerC CDS COG4973 3996287 3997183 + [L] Site-specific recombinase XerC yigB CDS COG1011 3997183 3997899 + [R] Predicted hydrolase (HAD superfamily) uvrD CDS COG0210 3997983 4000145 + [L] Superfamily I DNA and RNA helicases 2057 yigE CDS COG3698 4000292 4001056 - [S] Predicted periplasmic protein 2058 ysgD CDS NA 4001218 4001274 + NA 2059 corA CDS COG0598 4001426 4002376 + [P] Mg2+ and Co2+ transporters 2060 yigF CDS ROG4207 4002419 4002799 - NA yigG CDS NA 4002813 4003193 - NA 2061 rarD CDS COG2962 4003288 4004178 - [R] Predicted permeases yigI CDS COG2050 4004230 4004697 - [Q] Uncharacterized protein, possibly involved in aromatic 2062 pldA CDS COG2829 4004862 4005731 + [M] Outer membrane phospholipase A 2063 recQ CDS COG0514 4005864 4007693 + [L] Superfamily II DNA helicase 2064 rhtC CDS COG1280 4007757 4008377 + [E] Putative threonine efflux protein 2065 rhtB CDS COG1280 4008439 4009059 - [E] Putative threonine efflux protein 2066 pldB CDS COG2267 4009170 4010192 + [I] Lysophospholipase yigL CDS COG0561 4010200 4011000 + [R] Predicted hydrolases of the HAD superfamily bioP CDS COG0697 4011076 4011975 + [GER] Permeases of the drug/metabolite transporter (DMT) 2067 metR CDS COG0583 4011863 4012816 - [K] Transcriptional regulator 2068 metE CDS COG0620 4013053 4015314 + [E] Methionine synthase II (cobalamin-independent) 2069 ysgA CDS COG0412 4015354 4016169 - [Q] Dienelactone hydrolase and related enzymes 2070 udp CDS COG2820 4016431 4017192 + [F] Uridine phosphorylase 2071 rmuC CDS COG1322 4017333 4018760 + [S] Uncharacterized protein conserved in bacteria 2072 ubiE CDS COG2226 4018855 4019610 + [H] Methylase involved in ubiquinone/menaquinone biosynthesis ubiJ CDS COG3165 4019624 4020229 + [S] Uncharacterized protein conserved in bacteria ubiB CDS COG0661 4020226 4021866 + [R] Predicted unusual protein kinase tatA CDS COG1826 4021945 4022214 + [U] Sec-independent protein secretion pathway components tatB CDS COG1826 4022218 4022733 + [U] Sec-independent protein secretion pathway components tatC CDS COG0805 4022736 4023512 + [U] Sec-independent protein secretion pathway component TatC tatD CDS COG0084 4023554 4024336 + [L] Mg-dependent DNase 2073 rfaH CDS COG0250 4024333 4024821 - [K] Transcription antiterminator 2074 ubiD CDS COG0043 4024988 4026481 + [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases fre CDS COG0543 4026527 4027228 + [HC] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 2075 fadA CDS COG0183 4027609 4028772 - [I] Acetyl-CoA acetyltransferase fadB CDS COG1250 4028782 4030971 - [I] 3-hydroxyacyl-CoA dehydrogenase 2076 pepQ CDS COG0006 4031161 4032492 + [E] Xaa-Pro aminopeptidase yigZ CDS COG1739 4032492 4033106 + [S] Uncharacterized conserved protein trkH CDS COG0168 4033145 4034596 + [P] Trk-type K+ transport systems, membrane components hemG CDS COG4635 4034608 4035153 + [CH] Flavodoxin 2077 rrsA rRNA NA 4035531 4037072 + NA ileT tRNA NA 4037141 4037217 + NA alaT tRNA NA 4037260 4037335 + NA rrlA rRNA NA 4037519 4040423 + NA rrfA rRNA NA 4040517 4040636 + NA 2078 mobB CDS COG1763 4040906 4041433 - [H] Molybdopterin-guanine dinucleotide biosynthesis protein mobA CDS COG0746 4041415 4041999 - [H] Molybdopterin-guanine dinucleotide biosynthesis protein A 2079 yihD CDS COG3084 4042069 4042338 + [S] Uncharacterized protein conserved in bacteria srkA CDS COG2334 4042415 4043401 + [R] Putative homoserine kinase type II (protein dsbA CDS COG1651 4043418 4044044 + [O] Protein-disulfide isomerase 2080 yihF CDS COG5339 4044199 4045629 + [S] Uncharacterized protein conserved in bacteria 2081 yihG CDS COG0204 4045670 4046602 - [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase 2082 polA CDS COG0749 4046966 4049752 + [L] DNA polymerase I - 3'-5' exonuclease 2083 yihA CDS COG0218 4050133 4050765 - [R] Predicted GTPase 2084 yihI CDS COG3078 4051347 4051856 + [S] Uncharacterized protein conserved in bacteria 2085 hemN CDS COG0635 4052045 4053418 + [H] Coproporphyrinogen III oxidase and related Fe-S 2086 yshB CDS COG0577 4053647 4053757 - [V] ABC-type antimicrobial peptide transport system, permease glnG CDS COG2204 4053869 4055278 - [T] Response regulator containing CheY-like receiver, AAA-type glnL CDS COG3852 4055290 4056339 - [T] Signal transduction histidine kinase, nitrogen specific 2087 glnA CDS COG0174 4056625 4058034 - [E] Glutamine synthetase 2088 bipA CDS COG1217 4058407 4060230 + [T] Predicted membrane GTPase involved in stress 2089 yihL CDS COG2188 4060447 4061157 + [K] Transcriptional regulators yihM CDS ROG6879 4061165 4062145 + NA 2090 yihN CDS ROG5427 4062247 4063512 + NA 2091 ompL CDS NA 4063603 4064295 - NA 2092 yihO CDS COG2211 4064363 4065766 - [G] Na+/melibiose symporter and related transporters yihP CDS COG2211 4065809 4067194 - [G] Na+/melibiose symporter and related transporters yihQ CDS COG1501 4067240 4069276 - [G] Alpha-glucosidases, family 31 of glycosyl hydrolases yihR CDS COG2017 4069475 4070401 - [G] Galactose mutarotase and related enzymes yihS CDS COG2942 4070515 4071756 - [G] N-acyl-D-glucosamine 2-epimerase yihT CDS COG3684 4071773 4072651 - [G] Tagatose-1,6-bisphosphate aldolase yihU CDS COG2084 4072675 4073571 - [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 2093 yihV CDS COG0524 4073739 4074635 + [G] Sugar kinases, ribokinase family csqR CDS COG1349 4074669 4075454 + [KG] Transcriptional regulators of sugar metabolism 2094 yihX CDS COG1011 4075553 4076152 + [R] Predicted hydrolase (HAD superfamily) yihY CDS COG1295 4076146 4077018 + [S] Predicted membrane protein dtd CDS COG1490 4077015 4077452 + [J] D-Tyr-tRNAtyr deacylase fabY CDS COG0454 4077449 4078438 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2095 yiiE CDS ROG5008 4079291 4079509 + NA yiiF CDS ROG5008 4079751 4079969 + NA 2096 fdhE CDS COG3058 4080299 4081228 - [O] Uncharacterized protein involved in formate dehydrogenase fdoI CDS COG2864 4081225 4081860 - [C] Cytochrome b subunit of formate dehydrogenase fdoH CDS COG0437 4081857 4082759 - [C] Fe-S-cluster-containing hydrogenase components 1 fdoG CDS COG0243 4082772 4085822 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 2097 fdhD CDS COG1526 4086016 4086849 + [C] Uncharacterized protein required for formate dehydrogenase 2098 yiiG CDS ROG5958 4087002 4088057 + NA 2099 frvR CDS COG3711 4088107 4089855 - [K] Transcriptional antiterminator frvX CDS COG1363 4089855 4090925 - [G] Cellulase M and related proteins frvB CDS COG1299 4090915 4092366 - [G] Phosphotransferase system, fructose-specific IIC component frvA CDS COG1762 4092377 4092823 - [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 2100 rhaM CDS COG3254 4093124 4093438 - [S] Uncharacterized conserved protein rhaD CDS COG0235 4093448 4094272 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 2101 rhaA CDS COG4806 4094723 4095982 - [G] L-rhamnose isomerase rhaB CDS COG1070 4095979 4097448 - [G] Sugar (pentulose and hexulose) kinases 2102 rhaS CDS COG2207 4097736 4098572 + [K] AraC-type DNA-binding domain-containing proteins rhaR CDS COG2207 4098646 4099494 + [K] AraC-type DNA-binding domain-containing proteins 2103 rhaT CDS NA 4099491 4100525 - NA 2104 sodA CDS COG0605 4100810 4101430 + [P] Superoxide dismutase 2105 kdgT CDS ROG0711 4101690 4102673 + NA 2106 yiiM CDS COG2258 4102822 4103496 + [S] Uncharacterized protein conserved in bacteria 2107 cpxA CDS COG2205 4103602 4104975 - [T] Osmosensitive K+ channel histidine kinase cpxR CDS COG0745 4104972 4105670 - [TK] Response regulators consisting of a CheY-like 2108 cpxP CDS COG3678 4105820 4106320 + [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 2109 fieF CDS COG0053 4106469 4107371 + [P] Predicted Co/Zn/Cd cation transporters 2110 pfkA CDS COG0205 4107552 4108514 + [G] 6-phosphofructokinase 2111 sbp CDS COG1613 4108834 4109823 + [P] ABC-type sulfate transport system, periplasmic component cdh CDS COG2134 4109930 4110685 + [I] CDP-diacylglycerol pyrophosphatase 2112 tpiA CDS COG0149 4110740 4111507 - [G] Triosephosphate isomerase 2113 yiiQ CDS NA 4111615 4112214 - NA 2114 yiiR CDS COG3152 4112315 4112755 + [S] Predicted membrane protein 2115 yiiS CDS COG3691 4112967 4113266 + [S] Uncharacterized protein conserved in bacteria uspD CDS COG0589 4113293 4113721 + [T] Universal stress protein UspA and related 2116 fpr CDS COG1018 4113726 4114472 - [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 2117 glpX CDS COG1494 4114569 4115579 - [G] Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins glpK CDS COG0554 4115714 4117222 - [C] Glycerol kinase glpF CDS COG0580 4117245 4118090 - [G] Glycerol uptake facilitator and related permeases 2118 zapB CDS COG3074 4118515 4118760 + [S] Uncharacterized protein conserved in bacteria 2119 rraA CDS COG0684 4118845 4119330 - [H] Demethylmenaquinone methyltransferase menA CDS COG1575 4119423 4120349 - [H] 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2120 hslU CDS COG1220 4120416 4121747 - [O] ATP-dependent protease HslVU (ClpYQ), ATPase subunit hslV CDS COG5405 4121757 4122287 - [O] ATP-dependent protease HslVU (ClpYQ), peptidase subunit ftsN CDS COG3087 4122380 4123339 - [D] Cell division protein 2121 cytR CDS COG1609 4123431 4124456 - [K] Transcriptional regulators priA CDS COG1198 4124612 4126810 - [L] Primosomal protein N' (replication factor Y) 2122 rpmE CDS COG0254 4127013 4127225 + [J] Ribosomal protein L31 2123 yiiX CDS ROG3369 4127286 4127894 - NA 2124 metJ CDS COG3060 4128078 4128395 - [KE] Transcriptional regulator of met regulon 2125 metB CDS COG0626 4128672 4129832 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases metL CDS COG0527 4129835 4132267 + [E] Aspartokinases metF CDS COG0685 4132616 4133506 + [E] 5,10-methylenetetrahydrofolate reductase 2126 katG CDS COG0376 4133835 4136015 + [P] Catalase (peroxidase I) 2127 yijE CDS COG0697 4136108 4137013 + [GER] Permeases of the drug/metabolite transporter (DMT) 2128 yijF CDS COG3738 4137040 4137657 - [S] Uncharacterized protein conserved in bacteria 2129 gldA CDS COG0371 4137932 4139035 - [C] Glycerol dehydrogenase and related enzymes fsaB CDS COG0176 4139046 4139708 - [G] Transaldolase ptsA CDS COG1080 4139720 4142221 - [G] Phosphoenolpyruvate-protein kinase (PTS system EI component 2130 frwC CDS COG1299 4142530 4143609 + [G] Phosphotransferase system, fructose-specific IIC component frwB CDS COG1445 4143624 4143944 + [G] Phosphotransferase system fructose-specific component IIB pflD CDS COG1882 4143995 4146292 + [C] Pyruvate-formate lyase pflC CDS COG1180 4146258 4147136 + [O] Pyruvate-formate lyase-activating enzyme frwD CDS COG1445 4147138 4147479 + [G] Phosphotransferase system fructose-specific component IIB 2131 yijO CDS COG2207 4147466 4148317 - [K] AraC-type DNA-binding domain-containing proteins 2132 eptC CDS COG2194 4148532 4150265 - [R] Predicted membrane-associated, metal-dependent hydrolase 2133 ppc CDS COG2352 4150447 4153098 - [C] Phosphoenolpyruvate carboxylase 2134 argE CDS COG0624 4153696 4154847 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 2135 argC CDS COG0002 4155001 4156005 + [E] Acetylglutamate semialdehyde dehydrogenase argB CDS COG0548 4156013 4156789 + [E] Acetylglutamate kinase argH CDS COG0165 4156850 4158223 + [E] Argininosuccinate lyase 2136 oxyR CDS COG0583 4158490 4159407 + [K] Transcriptional regulator 2137 sthA CDS COG1249 4159390 4160790 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 2138 fabR CDS COG1309 4161067 4161771 + [K] Transcriptional regulator yijD CDS NA 4161771 4162130 + NA 2139 trmA CDS COG2265 4162170 4163270 - [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 2140 btuB CDS COG4206 4163639 4165483 + [H] Outer membrane cobalamin receptor protein murI CDS COG0796 4165428 4166285 + [M] Glutamate racemase 2141 rrsB rRNA NA 4166659 4168200 + NA gltT tRNA NA 4168372 4168447 + NA rrlB rRNA NA 4168641 4171544 + NA rrfB rRNA NA 4171637 4171756 + NA 2142 murB CDS COG0812 4172057 4173085 + [M] UDP-N-acetylmuramate dehydrogenase birA CDS COG0340 4173082 4174047 + [H] Biotin-(acetyl-CoA carboxylase) ligase 2143 coaA CDS COG1072 4174076 4175026 - [H] Panthothenate kinase 2144 thrU tRNA NA 4175388 4175463 + NA tyrU tRNA NA 4175472 4175556 + NA glyT tRNA NA 4175673 4175747 + NA thrT tRNA NA 4175754 4175829 + NA 2145 tufB CDS COG0050 4175944 4177128 + [J] GTPases - translation elongation factors secE CDS COG0690 4177358 4177741 + [U] Preprotein translocase subunit SecE nusG CDS COG0250 4177743 4178288 + [K] Transcription antiterminator rplK CDS COG0080 4178447 4178875 + [J] Ribosomal protein L11 rplA CDS COG0081 4178879 4179583 + [J] Ribosomal protein L1 rplJ CDS COG0244 4179996 4180493 + [J] Ribosomal protein L10 rplL CDS COG0222 4180560 4180925 + [J] Ribosomal protein L7/L12 rpoB CDS COG0085 4181245 4185273 + [K] DNA-directed RNA polymerase, beta subunit/140 kD rpoC CDS COG0086 4185350 4189573 + [K] DNA-directed RNA polymerase, beta' subunit/160 kD 2146 yjaZ CDS ROG6941 4189786 4190325 + NA 2147 thiH CDS COG1060 4190735 4191868 - [HR] Thiamine biosynthesis enzyme ThiH and related thiG CDS COG2022 4191865 4192635 - [H] Uncharacterized enzyme of thiazole biosynthesis thiS CDS COG2104 4192637 4192837 - [H] Sulfur transfer protein involved in thiamine thiF CDS COG0476 4192821 4193576 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and thiE CDS COG0352 4193569 4194204 - [H] Thiamine monophosphate synthase thiC CDS COG0422 4194204 4196099 - [H] Thiamine biosynthesis protein ThiC 2148 rsd CDS COG3160 4196332 4196808 - [K] Regulator of sigma D 2149 nudC CDS COG2816 4196903 4197676 + [L] NTP pyrophosphohydrolases containing a Zn-finger, probably hemE CDS COG0407 4197716 4198780 + [H] Uroporphyrinogen-III decarboxylase nfi CDS COG1515 4198790 4199461 + [L] Deoxyinosine 3'endonuclease (endonuclease V) yjaG CDS COG3068 4199504 4200094 + [S] Uncharacterized protein conserved in bacteria 2150 hupA CDS COG0776 4200281 4200553 + [L] Bacterial nucleoid DNA-binding protein yjaH CDS COG3042 4200566 4201261 + [R] Putative hemolysin 2151 zraP CDS COG3678 4201263 4201688 - [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 2152 zraS CDS COG0642 4201926 4203323 + [T] Signal transduction histidine kinase zraR CDS COG2204 4203320 4204645 + [T] Response regulator containing CheY-like receiver, AAA-type 2153 purD CDS COG0151 4204642 4205931 - [F] Phosphoribosylamine-glycine ligase purH CDS COG0138 4205943 4207532 - [F] AICAR transformylase/IMP cyclohydrolase PurH (only IMP 2154 rrsE rRNA NA 4208147 4209688 + NA gltV tRNA NA 4209774 4209849 + NA rrlE rRNA NA 4210043 4212946 + NA rrfE rRNA NA 4213040 4213159 + NA 2155 yjaA CDS ROG6865 4213234 4213617 + NA 2156 yjaB CDS COG0454 4213680 4214123 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2157 metA CDS COG1897 4214280 4215209 + [E] Homoserine trans-succinylase 2158 aceB CDS COG2225 4215478 4217079 + [C] Malate synthase aceA CDS COG2224 4217109 4218413 + [C] Isocitrate lyase aceK CDS COG4579 4218596 4220332 + [T] Isocitrate dehydrogenase kinase/phosphatase 2159 arpA CDS COG0666 4220301 4222487 - [R] FOG: Ankyrin repeat 2160 iclR CDS COG1414 4222804 4223628 - [K] Transcriptional regulator 2161 metH CDS COG1410 4223828 4227511 + [E] Methionine synthase I, cobalamin-binding domain 2162 yjbB CDS COG1283 4227731 4229362 + [P] Na+/phosphate symporter 2163 pepE CDS COG3340 4229453 4230142 - [E] Peptidase E 2164 rluF CDS COG1187 4230354 4231226 + [J] 16S rRNA uridine-516 pseudouridylate synthase and 2165 yjbD CDS NA 4231359 4231631 - NA 2166 lysC CDS COG0527 4231884 4233233 - [E] Aspartokinases 2167 pgi CDS COG0166 4233758 4235407 + [G] Glucose-6-phosphate isomerase 2168 yjbE CDS COG5455 4235906 4236148 + [S] Predicted integral membrane protein 2169 yjbF CDS ROG4342 4236262 4236900 + NA yjbG CDS ROG0647 4236897 4237634 + NA yjbH CDS ROG0647 4237634 4239730 + NA 2170 yjbT CDS NA 4239777 4240055 - NA 2171 psiE CDS COG3223 4240325 4240735 + [S] Predicted membrane protein 2172 xylE CDS COG0477 4240779 4242254 - [GEPR] Permeases of the major facilitator superfamily 2173 malG CDS COG3833 4242626 4243516 - [G] ABC-type maltose transport systems, permease component malF CDS COG1175 4243531 4245075 - [G] ABC-type sugar transport systems, permease components malE CDS COG2182 4245229 4246419 - [G] Maltose-binding periplasmic proteins/domains 2174 malK CDS COG3839 4246784 4247899 + [G] ABC-type sugar transport systems, ATPase components lamB CDS COG4580 4247971 4249311 + [G] Maltoporin (phage lambda and maltose receptor) 2175 malM CDS ROG8131 4249554 4250474 + NA 2176 ubiC CDS COG3161 4252506 4253003 + [H] 4-hydroxybenzoate synthetase (chorismate lyase) ubiA CDS COG0382 4253016 4253888 + [H] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 2177 plsB CDS COG2937 4254043 4256466 - [I] Glycerol-3-phosphate O-acyltransferase 2178 dgkA CDS COG0818 4256637 4257005 + [M] Diacylglycerol kinase 2179 lexA CDS COG1974 4257115 4257723 + [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) dinF CDS COG0534 4257742 4259121 + [V] Na+-driven multidrug efflux pump 2180 yjbJ CDS COG3237 4259237 4259446 + [S] Uncharacterized protein conserved in bacteria 2181 zur CDS COG0735 4259488 4260003 - [P] Fe2+/Zn2+ uptake regulation proteins 2182 yjbL CDS NA 4260321 4260575 + NA yjbM CDS NA 4260599 4261306 + NA 2183 dusA CDS COG0042 4261669 4262706 + [J] tRNA-dihydrouridine synthase 2184 pspG CDS ROG5373 4262840 4263082 + NA 2185 qorA CDS COG0604 4263248 4264231 - [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases 2186 dnaB CDS COG0305 4264314 4265729 + [L] Replicative DNA helicase alr CDS COG0787 4265782 4266861 + [M] Alanine racemase 2187 tyrB CDS COG1448 4267114 4268307 + [E] Aspartate/tyrosine/aromatic aminotransferase 2188 yjbS CDS NA 4268809 4269012 - NA 2189 aphA CDS COG3700 4269414 4270127 + [R] Acid phosphatase (class B) 2190 yjbQ CDS COG0432 4270238 4270654 + [S] Uncharacterized conserved protein yjbR CDS COG2315 4270658 4271014 + [S] Uncharacterized protein conserved in bacteria 2191 uvrA CDS COG0178 4271049 4273871 - [L] Excinuclease ATPase subunit 2192 ssb CDS COG0629 4274125 4274661 + [L] Single-stranded DNA-binding protein 2193 yjcB CDS NA 4274760 4275041 - NA 2194 pdeC CDS COG4943 4275471 4277057 + [T] Predicted signal transduction protein containing sensor 2195 soxS CDS COG2207 4277060 4277383 - [K] AraC-type DNA-binding domain-containing proteins 2196 soxR CDS COG0789 4277469 4277933 + [K] Predicted transcriptional regulators 2197 ghxP CDS COG2252 4278479 4279828 + [R] Permeases 2198 yjcE CDS COG0025 4279980 4281629 + [P] NhaP-type Na+/H+ and K+/H+ antiporters 2199 yjcF CDS COG1357 4281783 4283075 - [S] Uncharacterized low-complexity proteins 2200 actP CDS COG4147 4283253 4284902 - [R] Predicted symporter yjcH CDS COG3162 4284899 4285213 - [S] Predicted membrane protein 2201 acs CDS COG0365 4285413 4287371 - [I] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 2202 ytcB CDS NA 4287611 4287667 + NA 2203 nrfA CDS COG3303 4287764 4289200 + [P] Formate-dependent nitrite reductase, periplasmic cytochrome c552 nrfB CDS ROG7294 4289245 4289811 + NA nrfC CDS COG0437 4289808 4290479 + [C] Fe-S-cluster-containing hydrogenase components 1 nrfD CDS COG3301 4290476 4291432 + [P] Formate-dependent nitrite reductase, membrane component nrfE CDS COG1138 4291512 4293170 + [O] Cytochrome c biogenesis factor nrfF CDS COG3088 4293163 4293546 + [O] Uncharacterized protein involved in biosynthesis of nrfG CDS COG4235 4293543 4294139 + [O] Cytochrome c biogenesis factor 2204 gltP CDS COG1301 4294481 4295794 + [C] Na+/H+-dicarboxylate symporters 2205 yjcO CDS COG0790 4296436 4297125 - [R] FOG: TPR repeat, SEL1 subfamily 2206 fdhF CDS COG0243 4297219 4299366 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 2207 mdtP CDS COG1538 4299564 4301030 - [MU] Outer membrane protein mdtO CDS COG1289 4301027 4303078 - [S] Predicted membrane protein mdtN CDS COG1566 4303078 4304109 - [V] Multidrug resistance efflux pump ytcA CDS NA 4304128 4304403 - NA 2208 yjcS CDS COG2015 4304612 4306597 - [Q] Alkyl sulfatase and related hydrolases 2209 alsK CDS COG1940 4306870 4307799 - [KG] Transcriptional regulator/sugar kinase alsE CDS COG0036 4307783 4308478 - [G] Pentose-5-phosphate-3-epimerase alsC CDS COG1172 4308489 4309469 - [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components alsA CDS COG1129 4309448 4310980 - [G] ABC-type sugar transport system, ATPase component alsB CDS COG1879 4311107 4312042 - [G] ABC-type sugar transport system, periplasmic component alsR CDS COG1737 4312101 4312991 - [K] Transcriptional regulators 2210 rpiB CDS COG0698 4313350 4313799 + [G] Ribose 5-phosphate isomerase RpiB 2211 yjdP CDS NA 4313868 4314197 + NA 2212 phnP CDS COG1235 4314344 4315102 - [R] Metal-dependent hydrolases of the beta-lactamase superfamily phnO CDS COG0454 4315104 4315538 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases phnN CDS COG3709 4315525 4316082 - [P] Uncharacterized component of phosphonate metabolism phnM CDS COG3454 4316082 4317218 - [P] Metal-dependent hydrolase involved in phosphonate metabolism phnL CDS COG4778 4317215 4317895 - [P] ABC-type phosphonate transport system, ATPase component phnK CDS COG4107 4318006 4318764 - [P] ABC-type phosphonate transport system, ATPase component phnJ CDS COG3627 4318761 4319606 - [P] Uncharacterized enzyme of phosphonate metabolism phnI CDS COG3626 4319599 4320663 - [P] Uncharacterized enzyme of phosphonate metabolism phnH CDS COG3625 4320663 4321247 - [P] Uncharacterized enzyme of phosphonate metabolism phnG CDS COG3624 4321244 4321696 - [P] Uncharacterized enzyme of phosphonate metabolism phnF CDS COG2188 4321697 4322422 - [K] Transcriptional regulators 2213 phnD CDS COG3221 4323336 4324352 - [P] ABC-type phosphate/phosphonate transport system, periplasmic component phnC CDS COG3638 4324377 4325165 - [P] ABC-type phosphate/phosphonate transport system, ATPase component 2214 yjdN CDS COG2764 4325298 4325741 - [S] Uncharacterized protein conserved in bacteria 2215 yjdM CDS COG2824 4326399 4326734 - [P] Uncharacterized Zn-ribbon-containing protein involved in phosphonate 2216 rdcA CDS COG0699 4327135 4329363 + [R] Predicted GTPases (dynamin-related) rdcB CDS NA 4329360 4330238 + NA 2217 proP CDS COG0477 4330502 4332004 + [GEPR] Permeases of the major facilitator superfamily 2218 pmrR CDS NA 4332116 4332205 + NA 2219 basS CDS COG0642 4332181 4333272 - [T] Signal transduction histidine kinase basR CDS COG0745 4333282 4333950 - [TK] Response regulators consisting of a CheY-like eptA CDS COG2194 4333947 4335590 - [R] Predicted membrane-associated, metal-dependent hydrolase 2220 adiC CDS COG0531 4335694 4337031 - [E] Amino acid transporters 2221 adiY CDS COG2207 4337168 4337929 - [K] AraC-type DNA-binding domain-containing proteins 2222 adiA CDS COG1982 4338254 4340521 - [E] Arginine/lysine/ornithine decarboxylases 2223 melR CDS COG2207 4340720 4341628 - [K] AraC-type DNA-binding domain-containing proteins 2224 melA CDS COG1486 4341911 4343266 + [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases melB CDS COG2211 4343369 4344790 + [G] Na+/melibiose symporter and related transporters 2225 yjdF CDS COG3647 4344929 4345558 - [S] Predicted membrane protein 2226 fumB CDS COG1951 4345680 4347326 - [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class dcuB CDS COG2704 4347404 4348744 - [R] Anaerobic C4-dicarboxylate transporter 2227 dcuR CDS COG4565 4349315 4350034 - [KT] Response regulator of citrate/malate metabolism dcuS CDS COG3290 4350031 4351662 - [T] Signal transduction histidine kinase regulating citrate/malate 2228 yjdI CDS COG3592 4351843 4352073 + [S] Uncharacterized conserved protein yjdJ CDS COG2388 4352085 4352357 + [R] Predicted acetyltransferase 2229 ghoS CDS NA 4352584 4352880 + NA ghoT CDS NA 4352908 4353081 + NA 2230 lysU CDS COG1190 4353200 4354717 - [J] Lysyl-tRNA synthetase (class II) 2231 dtpC CDS COG3104 4354954 4356411 - [E] Dipeptide/tripeptide permease 2232 cadA CDS COG1982 4356470 4358617 - [E] Arginine/lysine/ornithine decarboxylases cadB CDS COG0531 4358697 4360031 - [E] Amino acid transporters 2233 cadC CDS COG3710 4360396 4361934 - [K] DNA-binding winged-HTH domains 2234 pheU tRNA NA 4362551 4362626 - NA 2235 yjdC CDS ROG3002 4362733 4363308 - NA dsbD CDS COG4232 4363345 4365042 - [OC] Thiol:disulfide interchange protein cutA CDS COG1324 4365018 4365356 - [P] Uncharacterized protein involved in tolerance to 2236 dcuA CDS COG2704 4365472 4366773 - [R] Anaerobic C4-dicarboxylate transporter aspA CDS COG1027 4366891 4368327 - [E] Aspartate ammonia-lyase 2237 fxsA CDS COG3030 4368664 4369140 + [R] Protein affecting phage T7 exclusion by 2238 yjeH CDS COG0531 4369156 4370412 - [E] Amino acid transporters 2239 groS CDS COG0234 4370688 4370981 + [O] Co-chaperonin GroES (HSP10) groL CDS COG0459 4371025 4372671 + [O] Chaperonin GroEL (HSP60 family) 2240 yjeI CDS ROG5059 4372809 4373162 + NA 2241 yjeJ CDS NA 4373365 4374234 - NA 2242 epmB CDS COG1509 4374629 4375657 - [E] Lysine 2,3-aminomutase 2243 efp CDS COG0231 4375699 4376265 + [J] Translation elongation factor P (EF-P)/translation initiation ecnA CDS COG5510 4376317 4376442 + [S] Predicted small secreted protein ecnB CDS COG5510 4376553 4376699 + [S] Predicted small secreted protein 2244 gdx CDS COG2076 4376875 4377192 + [P] Membrane transporters of cations and cationic 2245 blc CDS COG3040 4377189 4377722 - [M] Bacterial lipocalin 2246 ampC CDS COG1680 4377811 4378944 - [V] Beta-lactamase class C and other penicillin 2247 frdD CDS COG3080 4379007 4379366 - [C] Fumarate reductase subunit D frdC CDS COG3029 4379377 4379772 - [C] Fumarate reductase subunit C frdB CDS COG0479 4379783 4380517 - [C] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit frdA CDS COG1053 4380510 4382318 - [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 2248 epmA CDS COG2269 4382643 4383620 + [J] Truncated, possibly inactive, lysyl-tRNA synthetase (class 2249 yjeM CDS COG0531 4383839 4385341 + [E] Amino acid transporters yjeN CDS NA 4385393 4385707 + NA yjeO CDS NA 4385704 4386018 + NA 2250 mscM CDS COG3264 4386047 4389370 - [M] Small-conductance mechanosensitive channel psd CDS COG0688 4389392 4390360 - [I] Phosphatidylserine decarboxylase 2251 rsgA CDS COG1162 4390457 4391509 - [R] Predicted GTPases 2252 orn CDS COG1949 4391604 4392149 + [A] Oligoribonuclease (3'->5' exoribonuclease) 2253 glyV tRNA NA 4392360 4392435 + NA glyX tRNA NA 4392472 4392547 + NA glyY tRNA NA 4392583 4392658 + NA 2254 yjeV CDS NA 4392892 4392945 + NA 2255 queG CDS COG1600 4392928 4394067 - [C] Uncharacterized Fe-S protein 2256 nnr CDS COG0063 4394066 4395613 + [G] Predicted sugar kinase tsaE CDS COG0802 4395585 4396046 + [R] Predicted ATPase or kinase amiB CDS COG0860 4396065 4397402 + [M] N-acetylmuramoyl-L-alanine amidase mutL CDS COG0323 4397412 4399259 + [L] DNA mismatch repair enzyme (predicted ATPase) miaA CDS COG0324 4399252 4400202 + [J] tRNA delta(2)-isopentenylpyrophosphate transferase hfq CDS COG1923 4400288 4400596 + [R] Uncharacterized host factor I protein hflX CDS COG2262 4400672 4401952 + [R] GTPases hflK CDS COG0330 4402038 4403297 + [O] Membrane protease subunits, stomatin/prohibitin homologs hflC CDS COG0330 4403300 4404304 + [O] Membrane protease subunits, stomatin/prohibitin homologs 2257 yjeT CDS COG3242 4404386 4404583 + [S] Uncharacterized protein conserved in bacteria 2258 purA CDS COG0104 4404687 4405985 + [F] Adenylosuccinate synthase 2259 nsrR CDS COG1959 4406190 4406615 + [K] Predicted transcriptional regulator rnr CDS COG0557 4406654 4409095 + [K] Exoribonuclease R rlmB CDS COG0566 4409275 4410006 + [J] rRNA methylases 2260 yjfI CDS COG3789 4410133 4410534 + [S] Uncharacterized protein conserved in bacteria yjfJ CDS COG1842 4410553 4411251 + [KT] Phage shock protein A (IM30), suppresses yjfK CDS ROG3524 4411302 4411961 + NA yjfL CDS COG3766 4411979 4412377 + [S] Predicted membrane protein yjfM CDS COG5463 4412387 4413025 + [S] Predicted integral membrane protein yjfC CDS COG0754 4413028 4414191 + [E] Glutathionylspermidine synthase 2261 aidB CDS COG1960 4414275 4415900 + [I] Acyl-CoA dehydrogenases 2262 yjfN CDS NA 4416017 4416292 - NA 2263 bsmA CDS ROG1801 4416441 4416770 - NA 2264 yjfP CDS COG1073 4416952 4417701 + [R] Hydrolases of the alpha/beta superfamily 2265 ulaR CDS COG1349 4417698 4418453 - [KG] Transcriptional regulators of sugar metabolism ulaG CDS COG2220 4418561 4419625 - [R] Predicted Zn-dependent hydrolases of the beta-lactamase 2266 ulaA CDS COG3037 4419980 4421377 + [S] Uncharacterized protein conserved in bacteria ulaB CDS COG3414 4421393 4421698 + [G] Phosphotransferase system, galactitol-specific IIB component ulaC CDS COG1762 4421708 4422172 + [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) ulaD CDS COG0269 4422186 4422836 + [G] 3-hexulose-6-phosphate synthase and related proteins ulaE CDS COG3623 4422846 4423700 + [G] Putative L-xylulose-5-phosphate 3-epimerase ulaF CDS COG0235 4423700 4424386 + [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 2267 yjfY CDS NA 4424516 4424791 - NA 2268 rpsF CDS COG0360 4425118 4425513 + [J] Ribosomal protein S6 priB CDS COG2965 4425520 4425834 + [L] Primosomal replication protein N rpsR CDS COG0238 4425839 4426066 + [J] Ribosomal protein S18 rplI CDS COG0359 4426108 4426557 + [J] Ribosomal protein L9 2269 yjfZ CDS NA 4426628 4427422 - NA 2270 ytfB CDS COG3061 4428079 4428717 - [M] Cell envelope opacity-associated protein A 2271 fklB CDS COG0545 4428935 4429555 + [O] FKBP-type peptidyl-prolyl cis-trans isomerases 1 2272 cycA CDS COG1113 4429864 4431276 + [E] Gamma-aminobutyrate permease and related permeases 2273 ytfE CDS COG2846 4431321 4431983 - [D] Regulator of cell morphogenesis and NO 2274 ytfF CDS COG0697 4432091 4433056 - [GER] Permeases of the drug/metabolite transporter (DMT) 2275 qorB CDS COG0702 4433164 4434024 - [MG] Predicted nucleoside-diphosphate-sugar epimerases 2276 ytfH CDS COG1733 4434113 4434493 + [K] Predicted transcriptional regulators 2277 cpdB CDS COG0737 4434622 4436565 - [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 2278 cysQ CDS COG1218 4436755 4437495 + [P] 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 2279 ytfI CDS NA 4437707 4438645 + NA 2280 ytfJ CDS COG3054 4438708 4439262 - [R] Predicted transcriptional regulator 2281 ytfK CDS ROG6034 4439587 4439793 + NA 2282 paeA CDS COG1253 4439872 4441215 - [R] Hemolysins and related proteins containing CBS 2283 msrA CDS COG0225 4441538 4442176 - [O] Peptide methionine sulfoxide reductase 2284 tamA CDS COG0729 4442382 4444115 + [M] Outer membrane protein tamB CDS COG2911 4444112 4447891 + [S] Uncharacterized protein conserved in bacteria ytfP CDS COG2105 4447894 4448235 + [S] Uncharacterized conserved protein 2285 chpS CDS COG2336 4448447 4448698 + [T] Growth regulator chpB CDS COG2337 4448692 4449042 + [T] Growth inhibitor 2286 ppa CDS COG0221 4449122 4449652 - [C] Inorganic pyrophosphatase 2287 ytfQ CDS COG1879 4449962 4450918 + [G] ABC-type sugar transport system, periplasmic component ytfR CDS COG1129 4451058 4452560 + [G] ABC-type sugar transport system, ATPase component ytfT CDS COG4158 4452571 4453596 + [R] Predicted ABC-type sugar transport system, permease yjfF CDS COG1172 4453583 4454578 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 2288 fbp CDS COG0158 4454611 4455609 - [G] Fructose-1,6-bisphosphatase 2289 mpl CDS COG0773 4455785 4457158 + [M] UDP-N-acetylmuramate-alanine ligase 2290 yjgA CDS COG3028 4457314 4457865 - [S] Uncharacterized protein conserved in bacteria 2291 tldE CDS COG0312 4457959 4459311 + [R] Predicted Zn-dependent proteases and their inactivated 2292 nrdG CDS COG0602 4459900 4460364 - [O] Organic radical activating enzymes nrdD CDS COG1328 4460522 4462660 - [F] Oxygen-sensitive ribonucleoside-triphosphate reductase 2293 treC CDS COG0366 4463054 4464709 - [G] Glycosidases treB CDS COG1263 4464759 4466180 - [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific treR CDS COG1609 4466299 4467246 - [K] Transcriptional regulators 2294 mgtL CDS NA 4467431 4467484 + NA 2295 mgtA CDS COG0474 4467625 4470321 + [P] Cation transport ATPase 2296 ridA CDS COG0251 4470527 4470913 - [J] Putative translation initiation inhibitor, yjgF family pyrI CDS COG1781 4470986 4471447 - [F] Aspartate carbamoyltransferase, regulatory subunit pyrB CDS COG0540 4471460 4472395 - [F] Aspartate carbamoyltransferase, catalytic chain pyrL CDS NA 4472399 4472533 - NA 2297 yjgH CDS COG0251 4472814 4473209 - [J] Putative translation initiation inhibitor, yjgF family bdcA CDS COG1028 4473340 4474053 - [IQR] Dehydrogenases with different specificities (related to 2298 bdcR CDS COG1309 4474124 4474717 + [K] Transcriptional regulator 2299 tabA CDS COG2731 4474862 4475314 + [G] Beta-galactosidase, beta subunit 2300 yjgL CDS ROG3261 4475437 4477251 + NA 2301 argI CDS COG0078 4477307 4478311 - [E] Ornithine carbamoyltransferase 2302 rraB CDS COG3076 4478473 4478889 + [S] Uncharacterized protein conserved in bacteria 2303 yjgM CDS COG0454 4479034 4479537 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2304 yjgN CDS COG4269 4479730 4480926 + [S] Predicted membrane protein 2305 valS CDS COG0525 4480982 4483837 - [J] Valyl-tRNA synthetase holC CDS COG2927 4483837 4484280 - [L] DNA polymerase III, chi subunit pepA CDS COG0260 4484440 4485951 - [E] Leucyl aminopeptidase 2306 ytgB CDS NA 4486043 4486099 + NA ytgA CDS NA 4486105 4486155 + NA 2307 lptF CDS COG0795 4486218 4487318 + [R] Predicted permeases lptG CDS COG0795 4487318 4488400 + [R] Predicted permeases 2308 yjgR CDS COG0433 4488561 4490063 - [R] Predicted ATPase 2309 idnR CDS COG1609 4490141 4491139 - [K] Transcriptional regulators idnT CDS COG2610 4491206 4492525 - [GE] H+/gluconate symporter and related permeases 2310 idnO CDS COG1028 4492587 4493351 - [IQR] Dehydrogenases with different specificities (related to idnD CDS COG1063 4493375 4494406 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 2311 idnK CDS COG3265 4494623 4495186 + [G] Gluconate kinase 2312 ahr CDS COG1064 4495190 4496209 - [R] Zn-dependent alcohol dehydrogenases 2313 leuX tRNA NA 4496405 4496489 + NA 2314 insC6 CDS COG2963 4498272 4498637 + [L] Transposase and inactivated derivatives insD6 CDS COG2801 4498595 4499500 + [L] Transposase and inactivated derivatives 2315 yjgZ CDS COG3436 4501260 4501589 + [L] Transposase and inactivated derivatives 2316 insG CDS COG3385 4502103 4503431 - [L] FOG: Transposase and inactivated derivatives 2317 nanX CDS COG0477 4504058 4505275 + [GEPR] Permeases of the major facilitator superfamily nanY CDS COG0673 4505287 4506405 + [R] Predicted dehydrogenases and related proteins ythA CDS NA 4506448 4506573 + NA 2318 insO CDS COG2963 4507197 4507451 + [L] Transposase and inactivated derivatives 2319 insO_2 CDS COG2801 4509009 4509479 + [L] Transposase and inactivated derivatives insO_3 CDS COG2801 4509479 4509793 + [L] Transposase and inactivated derivatives 2320 insI3 CDS COG2826 4507466 4508617 - [L] Transposase and inactivated derivatives, IS30 family 2321 fecE CDS COG1120 4510690 4511457 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fecD CDS COG0609 4511458 4512414 - [P] ABC-type Fe3+-siderophore transport system, permease component fecC CDS COG0609 4512411 4513409 - [P] ABC-type Fe3+-siderophore transport system, permease component fecB CDS COG4594 4513406 4514308 - [P] ABC-type Fe3+-citrate transport system, periplasmic component fecA CDS COG4772 4514353 4516677 - [P] Outer membrane receptor for Fe3+-dicitrate fecR CDS COG3712 4516764 4517717 - [PT] Fe2+-dicitrate sensor, membrane component fecI CDS COG1595 4517714 4518235 - [K] DNA-directed RNA polymerase specialized sigma subunit, 2322 ykiE CDS NA 4518372 4518440 + NA 2323 insA7 CDS COG3677 4518527 4518802 + [L] Transposase and inactivated derivatives 2324 yjhU CDS COG2390 4519338 4520324 - [K] Transcriptional regulator, contains sigma factor-related N-terminal 2325 yjhF CDS COG2610 4520671 4522020 - [GE] H+/gluconate symporter and related permeases yjhG CDS COG0129 4522127 4524094 - [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase yjhH CDS COG0329 4524105 4525010 - [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase yjhI CDS COG1414 4525015 4525803 - [K] Transcriptional regulator 2326 sgcR CDS COG1349 4526106 4526888 - [KG] Transcriptional regulators of sugar metabolism sgcE CDS COG0036 4526905 4527537 - [G] Pentose-5-phosphate-3-epimerase sgcA CDS COG1762 4527549 4527980 - [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 2327 sgcQ CDS COG0434 4528111 4528917 - [R] Predicted TIM-barrel enzyme sgcC CDS COG3775 4528930 4530243 - [G] Phosphotransferase system, galactitol-specific IIC component sgcB CDS COG3414 4530255 4530533 - [G] Phosphotransferase system, galactitol-specific IIB component sgcX CDS COG1363 4530530 4531651 - [G] Cellulase M and related proteins 2328 yjhP CDS COG0500 4532437 4533183 - [QR] SAM-dependent methyltransferases 2329 yjhQ CDS COG3153 4533239 4533784 - [R] Predicted acetyltransferase topAI CDS COG3811 4533796 4534053 - [S] Uncharacterized protein conserved in bacteria 2330 ythB CDS NA 4536597 4536695 + NA 2331 nanS CDS ROG0841 4536614 4537594 - NA 2332 nanM CDS COG3055 4537659 4538765 - [S] Uncharacterized protein conserved in bacteria nanC CDS NA 4538785 4539501 - NA 2333 fimB CDS COG4974 4540957 4541559 + [L] Site-specific recombinase XerD fimE CDS COG4974 4542037 4542633 + [L] Site-specific recombinase XerD 2334 fimA CDS COG3539 4543115 4543663 + [NU] P pilus assembly protein, pilin FimA fimI CDS COG3539 4543728 4544267 + [NU] P pilus assembly protein, pilin FimA fimC CDS COG3121 4544304 4545029 + [NU] P pilus assembly protein, chaperone PapD fimD CDS COG3188 4545096 4547732 + [NU] P pilus assembly protein, porin PapC fimF CDS COG3539 4547742 4548272 + [NU] P pilus assembly protein, pilin FimA fimG CDS COG3539 4548285 4548788 + [NU] P pilus assembly protein, pilin FimA fimH CDS COG3539 4548808 4549710 + [NU] P pilus assembly protein, pilin FimA 2335 gntP CDS COG2610 4549953 4551296 - [GE] H+/gluconate symporter and related permeases 2336 uxuA CDS COG1312 4551636 4552820 + [G] D-mannonate dehydratase uxuB CDS COG0246 4552901 4554361 + [G] Mannitol-1-phosphate/altronate dehydrogenases uxuR CDS COG2186 4554576 4555349 + [K] Transcriptional regulators 2337 yjiC CDS NA 4555490 4556320 - NA 2338 ytiC CDS NA 4556574 4556675 + NA ytiD CDS NA 4556654 4556797 + NA 2339 idlP CDS NA 4556913 4556996 + NA iraD CDS COG3518 4556993 4557385 + [S] Uncharacterized protein conserved in bacteria 2340 hypT CDS COG0583 4557378 4558289 - [K] Transcriptional regulator 2341 iadA CDS COG0044 4558354 4559526 - [F] Dihydroorotase and related cyclic amidohydrolases yjiG CDS COG0700 4559539 4560000 - [S] Uncharacterized membrane protein yjiH CDS COG3314 4559997 4560680 - [S] Uncharacterized protein conserved in bacteria 2342 kptA CDS COG1859 4560930 4561484 + [J] RNA:NAD 2'-phosphotransferase 2343 yjiJ CDS NA 4561497 4562675 - NA 2344 yjiK CDS COG3204 4562743 4563603 - [S] Uncharacterized protein conserved in bacteria 2345 ytiA CDS ROG3462 4563668 4563925 - NA yjiL CDS COG1924 4563922 4564689 - [I] Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase yjiM CDS COG1775 4564699 4565850 - [E] Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB 2346 yjiN CDS COG2733 4565966 4567246 - [S] Predicted membrane protein mdtM CDS COG0477 4567287 4568519 - [GEPR] Permeases of the major facilitator superfamily 2347 ytiE CDS NA 4568692 4568727 - NA 2348 yjiR CDS COG1167 4570162 4571574 - [KE] Transcriptional regulators containing a DNA-binding HTH 2349 yjiS CDS COG5457 4571751 4571915 + [S] Uncharacterized conserved small protein 2350 yjiT CDS NA 4572414 4573931 + NA 2351 mcrC CDS COG4268 4576912 4577958 - [V] McrBC 5-methylcytosine restriction system component mcrB CDS COG1401 4577958 4579337 - [V] GTPase subunit of restriction endonuclease 2352 mcrB_2 CDS COG1401 4577958 4578854 - [V] GTPase subunit of restriction endonuclease 2353 symE CDS COG2336 4579499 4579840 - [T] Growth regulator 2354 hsdS CDS COG0732 4580068 4581462 - [V] Restriction endonuclease S subunits hsdM CDS COG0286 4581459 4583048 - [V] Type I restriction-modification system methyltransferase subunit hsdR CDS COG4096 4583249 4586761 - [V] Type I site-specific restriction-modification system, R 2355 mrr CDS COG1715 4586949 4587863 + [V] Restriction endonuclease 2356 yjiA CDS COG0523 4587909 4588865 - [R] Putative GTPases (G3E family) yjiX CDS COG2879 4588876 4589079 - [S] Uncharacterized small protein btsT CDS COG1966 4589129 4591279 - [T] Carbon starvation protein, predicted membrane protein 2357 tsr CDS COG0840 4591657 4593312 + [NT] Methyl-accepting chemotaxis protein 2358 lgoT CDS COG2271 4593361 4594722 - [G] Sugar phosphate permease 2359 lgoR CDS COG1802 4594937 4595851 - [K] Transcriptional regulators 2360 lgoD CDS COG1063 4595990 4597012 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 2361 opgB CDS COG1368 4597150 4599441 - [M] Phosphoglycerol transferase and related proteins, alkaline 2362 yjjA CDS ROG6913 4599695 4600189 - NA dnaC CDS COG1484 4600238 4600975 - [L] DNA replication protein dnaT CDS COG5529 4600978 4601517 - [R] Pyocin large subunit 2363 yjjB CDS COG3610 4601624 4602097 - [S] Uncharacterized conserved protein yjjP CDS COG2966 4602088 4602858 - [S] Uncharacterized conserved protein 2364 yjjQ CDS NA 4603477 4604202 + NA bglJ CDS COG2771 4604160 4604837 + [K] DNA-binding HTH domain-containing proteins 2365 fhuF CDS COG4114 4604875 4605663 - [R] Uncharacterized Fe-S protein 2366 yjjZ CDS NA 4605804 4606040 + NA 2367 leuV tRNA NA 4606079 4606165 - NA leuP tRNA NA 4606200 4606286 - NA leuQ tRNA NA 4606315 4606401 - NA 2368 rsmC CDS COG2813 4606669 4607700 - [J] 16S RNA G1207 methylase RsmC 2369 holD CDS COG3050 4607803 4608216 + [L] DNA polymerase III, psi subunit rimI CDS COG0456 4608185 4608631 + [R] Acetyltransferases yjjG CDS COG1011 4608646 4609323 + [R] Predicted hydrolase (HAD superfamily) 2370 prfC CDS COG4108 4609414 4611003 + [J] Peptide chain release factor RF-3 2371 osmY CDS COG2823 4611396 4612001 + [R] Predicted periplasmic or secreted lipoprotein 2372 ytjA CDS COG5487 4612128 4612289 + [S] Small integral membrane protein 2373 yjjU CDS COG4667 4612411 4613484 + [R] Predicted esterase of the alpha-beta hydrolase yjjV CDS COG0084 4613481 4614260 + [L] Mg-dependent DNase 2374 yjjW CDS COG1180 4614680 4615543 - [O] Pyruvate-formate lyase-activating enzyme yjjI CDS ROG2003 4615515 4617065 - NA 2375 deoC CDS COG0274 4617323 4618102 + [F] Deoxyribose-phosphate aldolase deoA CDS COG0213 4618229 4619551 + [F] Thymidine phosphorylase deoB CDS COG1015 4619603 4620826 + [G] Phosphopentomutase deoD CDS COG0813 4620883 4621602 + [F] Purine-nucleoside phosphorylase 2376 yjjJ CDS COG3550 4621769 4623100 + [R] Uncharacterized protein related to capsule biosynthesis 2377 lplA CDS COG0095 4623101 4624117 - [H] Lipoate-protein ligase A ytjB CDS COG3726 4624145 4624789 - [R] Uncharacterized membrane protein affecting hemolysin expression 2378 serB CDS COG0560 4624895 4625863 + [E] Phosphoserine phosphatase radA CDS COG1066 4625912 4627294 + [O] Predicted ATP-dependent serine protease nadR CDS COG3172 4627315 4628547 + [H] Predicted ATPase/kinase involved in NAD metabolism 2379 ettA CDS COG0488 4628855 4630522 - [R] ATPase components of ABC transporters with 2380 slt CDS COG0741 4630733 4632670 + [M] Soluble lytic murein transglycosylase and related 2381 trpR CDS COG2973 4632760 4633086 + [K] Trp operon repressor 2382 yjjX CDS COG1986 4633233 4633745 - [S] Uncharacterized conserved protein 2383 ytjC CDS COG0406 4633797 4634444 + [G] Fructose-2,6-bisphosphatase 2384 rob CDS COG2207 4634441 4635310 - [K] AraC-type DNA-binding domain-containing proteins 2385 creA CDS COG3045 4635521 4635994 + [S] Uncharacterized protein conserved in bacteria creB CDS COG0745 4636007 4636696 + [TK] Response regulators consisting of a CheY-like creC CDS COG2205 4636696 4638120 + [T] Osmosensitive K+ channel histidine kinase creD CDS COG4452 4638178 4639530 + [V] Inner membrane protein involved in colicin 2386 arcA CDS COG0745 4639590 4640306 - [TK] Response regulators consisting of a CheY-like 2387 yjjY CDS NA 4640402 4640542 + NA 2388 ytjE CDS NA 4640718 4640771 + NA 2389 yjtD CDS NA 4640942 4641628 + NA