RID: TZHKW0UF016 Job Title:Nucleotide Sequence Program: BLASTX Query: None ID: lcl|Query_63461(dna) Length: 33381 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Max Total Query E Per. Description Score Score cover Value Ident Accession RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-lik... 95.9 1245 6% 2e-18 81.82 Q5ZI22.1 RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-lik... 67.4 67.4 0% 4e-09 54.10 Q5FVW4.1 RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-lik... 60.8 60.8 0% 4e-07 72.22 Q6P0U9.1 RecName: Full=Nucleoporin NUP42; AltName: Full=NLP-1; AltName:... 60.5 289 1% 6e-07 55.32 Q8CIC2.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... 43.9 80.1 0% 8e-07 28.77 O92815.2 RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-lik... 58.2 102 0% 4e-06 64.86 Q5XGN1.2 RecName: Full=Nucleoporin NUP42; AltName: Full=NLP-1; AltName:... 50.8 288 1% 5e-04 73.33 O15504.1 RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-lik... 50.8 288 1% 5e-04 73.33 Q5RB98.1 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... 40.8 67.8 0% 0.003 34.09 P0C211.2 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... 40.8 67.8 0% 0.003 34.09 P03362.3 RecName: Full=Gag-Pro-Pol polyprotein; AltName:... 41.2 67.8 0% 0.004 34.09 P14078.3 Alignments: >RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-like protein 2 [Gallus gallus] Sequence ID: Q5ZI22.1 Length: 413 Range 1: 358 to 412 Score:95.9 bits(237), Expect:2e-18, Method:Compositional matrix adjust., Identities:45/55(82%), Positives:49/55(89%), Gaps:0/55(0%) Query 15635 HNVTSAPSAVRDGIRPDRLYTPRSELTAEELRQFAAKRFTLGKIPLKPPPADMLH 15799 HNVTSAPSAV +GI D+LYTPRSELTAEEL QF AKRFTLGKIPLKPPP D+L+ Sbjct 358 HNVTSAPSAVPNGIASDKLYTPRSELTAEELEQFEAKRFTLGKIPLKPPPIDLLY 412 Range 2: 115 to 146 Score:63.9 bits(154), Expect:4e-08, Method:Compositional matrix adjust., Identities:28/32(88%), Positives:29/32(90%), Gaps:0/32(0%) Query 3256 DRIAKDMATWESSGQWMFSCYSPEKGKPNVPG 3351 D +AKDMATWESSGQWMFSCYSPE GKPNV G Sbjct 115 DCVAKDMATWESSGQWMFSCYSPEAGKPNVSG 146 Range 3: 115 to 146 Score:63.9 bits(154), Expect:4e-08, Method:Compositional matrix adjust., Identities:27/32(84%), Positives:29/32(90%), Gaps:0/32(0%) Query 25380 DVIAEDMATWESSGQWMFSCYSPETGKPNVPG 25475 D +A+DMATWESSGQWMFSCYSPE GKPNV G Sbjct 115 DCVAKDMATWESSGQWMFSCYSPEAGKPNVSG 146 Range 4: 115 to 146 Score:63.9 bits(154), Expect:4e-08, Method:Compositional matrix adjust., Identities:27/32(84%), Positives:29/32(90%), Gaps:0/32(0%) Query 28053 DVIAEDMATWESSGQWMFSCYSPETGKPNVPG 28148 D +A+DMATWESSGQWMFSCYSPE GKPNV G Sbjct 115 DCVAKDMATWESSGQWMFSCYSPEAGKPNVSG 146 Range 5: 115 to 146 Score:63.9 bits(154), Expect:5e-08, Method:Compositional matrix adjust., Identities:27/32(84%), Positives:29/32(90%), Gaps:0/32(0%) Query 33213 DVIAEDMATWESSGQWMFSCYSPEKGKPNVPG 33308 D +A+DMATWESSGQWMFSCYSPE GKPNV G Sbjct 115 DCVAKDMATWESSGQWMFSCYSPEAGKPNVSG 146 Range 6: 117 to 146 Score:61.2 bits(147), Expect:3e-07, Method:Compositional matrix adjust., Identities:26/30(87%), Positives:28/30(93%), Gaps:0/30(0%) Query 13309 IAEDMATWESSGQWMFSCYSPETGKPNVPG 13398 +A+DMATWESSGQWMFSCYSPE GKPNV G Sbjct 117 VAKDMATWESSGQWMFSCYSPEAGKPNVSG 146 Range 7: 118 to 146 Score:60.5 bits(145), Expect:5e-07, Method:Compositional matrix adjust., Identities:26/29(90%), Positives:27/29(93%), Gaps:0/29(0%) Query 10806 AEDMATWESSGQWMFSCYSPETGKPNVPG 10892 A+DMATWESSGQWMFSCYSPE GKPNV G Sbjct 118 AKDMATWESSGQWMFSCYSPEAGKPNVSG 146 Range 8: 145 to 180 Score:53.9 bits(128), Expect:6e-05, Method:Compositional matrix adjust., Identities:27/42(64%), Positives:32/42(76%), Gaps:6/42(14%) Query 11214 AGFGEFSAEEVRLEYYNCSANNNTGYYVSI*NN*PSVDQVGQ 11339 +GF EFSAEEVRLEYYNCSANNNT Y++ SV+Q+ Q Sbjct 145 SGFREFSAEEVRLEYYNCSANNNTENYIN------SVNQLVQ 180 Range 9: 145 to 180 Score:53.9 bits(128), Expect:6e-05, Method:Compositional matrix adjust., Identities:27/42(64%), Positives:32/42(76%), Gaps:6/42(14%) Query 3673 AGFGEFSAEEVRLEYYNCSANNNTGYYVSI*NN*PSVDQVGQ 3798 +GF EFSAEEVRLEYYNCSANNNT Y++ SV+Q+ Q Sbjct 145 SGFREFSAEEVRLEYYNCSANNNTENYIN------SVNQLVQ 180 Range 10: 145 to 180 Score:53.5 bits(127), Expect:7e-05, Method:Compositional matrix adjust., Identities:27/42(64%), Positives:32/42(76%), Gaps:6/42(14%) Query 25797 AGFGEFSAEEVRLEYYNCSANNNTGYYVSI*NN*PSVDQVGQ 25922 +GF EFSAEEVRLEYYNCSANNNT Y++ SV+Q+ Q Sbjct 145 SGFREFSAEEVRLEYYNCSANNNTENYIN------SVNQLVQ 180 Range 11: 145 to 180 Score:50.4 bits(119), Expect:8e-04, Method:Compositional matrix adjust., Identities:27/42(64%), Positives:32/42(76%), Gaps:6/42(14%) Query 13719 AGFGEFSAEEVRLEYYNCSANNNTGYYVSI*NN*PSVDQVGQ 13844 +GF EFSAEEVRLEYYNCSANNNT Y++ SV+Q+ Q Sbjct 145 SGFREFSAEEVRLEYYNCSANNNTENYIN------SVNQLVQ 180 Range 12: 79 to 114 Score:44.3 bits(103), Expect:8e-04, Method:Compositional matrix adjust., Identities:23/36(64%), Positives:25/36(69%), Gaps:0/36(0%) Query 32705 FWTSGNNGAVLSQNAFSALSSAQPADGQRDGQQSLL 32812 F + GN AV SQN FSALSSA PADG D +Q LL Sbjct 79 FGSPGNKSAVFSQNRFSALSSAHPADGFSDEEQRLL 114 Range 13: 49 to 62 Score:25.4 bits(54), Expect:8e-04, Method:Compositional matrix adjust., Identities:7/14(50%), Positives:12/14(85%), Gaps:0/14(0%) Query 32550 RHTNIIQPAVFQHT 32591 R+ N+IQP +F+H+ Sbjct 49 RYANVIQPPIFKHS 62 Range 14: 145 to 172 Score:50.1 bits(118), Expect:0.001, Method:Compositional matrix adjust., Identities:23/28(82%), Positives:25/28(89%), Gaps:0/28(0%) Query 31013 AGFGEFSAEEVRLEYYNCSANNNTGYYV 31096 +GF EFSAEEVRLEYYNCSANNNT Y+ Sbjct 145 SGFREFSAEEVRLEYYNCSANNNTENYI 172 Range 15: 117 to 138 Score:49.7 bits(117), Expect:0.001, Method:Compositional matrix adjust., Identities:20/22(91%), Positives:22/22(100%), Gaps:0/22(0%) Query 30601 IAEDMATWESSGQWMFSCYSPE 30666 +A+DMATWESSGQWMFSCYSPE Sbjct 117 VAKDMATWESSGQWMFSCYSPE 138 Range 16: 172 to 202 Score:49.3 bits(116), Expect:0.002, Method:Compositional matrix adjust., Identities:23/31(74%), Positives:26/31(83%), Gaps:0/31(0%) Query 3946 INSVNQLVQQWRKRLQELKALNGSGKAPMVS 4038 INSVNQLVQ+ R RLQELKALN SGK ++S Sbjct 172 INSVNQLVQERRNRLQELKALNASGKESLLS 202 Range 17: 172 to 202 Score:47.8 bits(112), Expect:0.005, Method:Compositional matrix adjust., Identities:23/31(74%), Positives:27/31(87%), Gaps:0/31(0%) Query 8845 INSVNQLVQQWRKRLQELKALNGSGKAAMVS 8937 INSVNQLVQ+ R RLQELKALN SGK +++S Sbjct 172 INSVNQLVQERRNRLQELKALNASGKESLLS 202 Range 18: 118 to 132 Score:36.6 bits(83), Expect:0.015, Method:Compositional matrix adjust., Identities:13/15(87%), Positives:15/15(100%), Gaps:0/15(0%) Query 5760 SEDMATWESSGQWMF 5804 ++DMATWESSGQWMF Sbjct 118 AKDMATWESSGQWMF 132 Range 19: 132 to 146 Score:28.9 bits(63), Expect:0.015, Method:Compositional matrix adjust., Identities:12/15(80%), Positives:12/15(80%), Gaps:0/15(0%) Query 5801 VSCYSPETGKPNVPG 5845 SCYSPE GKPNV G Sbjct 132 FSCYSPEAGKPNVSG 146 Range 20: 79 to 114 Score:45.8 bits(107), Expect:0.019, Method:Compositional matrix adjust., Identities:24/36(67%), Positives:25/36(69%), Gaps:0/36(0%) Query 5247 FGPAGNNGAVLSQNAFSALSSAQPADGQRDGQQSLL 5354 FG GN AV SQN FSALSSA PADG D +Q LL Sbjct 79 FGSPGNKSAVFSQNRFSALSSAHPADGFSDEEQRLL 114 Range 21: 172 to 202 Score:45.8 bits(107), Expect:0.020, Method:Compositional matrix adjust., Identities:23/31(74%), Positives:26/31(83%), Gaps:0/31(0%) Query 11486 INSVNQLVQQWRKRLQELKALNGSGKAPMVS 11578 INSVNQLVQ+ R RLQELKALN SGK ++S Sbjct 172 INSVNQLVQERRNRLQELKALNASGKESLLS 202 Range 22: 172 to 202 Score:45.8 bits(107), Expect:0.020, Method:Compositional matrix adjust., Identities:23/31(74%), Positives:26/31(83%), Gaps:0/31(0%) Query 13991 INSVNQLVQQWRKRLQELKALNGSGKAPMVS 14083 INSVNQLVQ+ R RLQELKALN SGK ++S Sbjct 172 INSVNQLVQERRNRLQELKALNASGKESLLS 202 Range 23: 172 to 198 Score:45.4 bits(106), Expect:0.030, Method:Compositional matrix adjust., Identities:22/27(81%), Positives:24/27(88%), Gaps:0/27(0%) Query 26069 INSVNQLVQQWRKRLQELKALNGSGKQ 26149 INSVNQLVQ+ R RLQELKALN SGK+ Sbjct 172 INSVNQLVQERRNRLQELKALNASGKE 198 Range 24: 172 to 198 Score:45.4 bits(106), Expect:0.030, Method:Compositional matrix adjust., Identities:22/27(81%), Positives:24/27(88%), Gaps:0/27(0%) Query 28742 INSVNQLVQQWRKRLQELKALNGSGKQ 28822 INSVNQLVQ+ R RLQELKALN SGK+ Sbjct 172 INSVNQLVQERRNRLQELKALNASGKE 198 >RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-like protein 2 [Xenopus tropicalis] Sequence ID: Q5FVW4.1 Length: 449 Range 1: 387 to 447 Score:67.4 bits(163), Expect:4e-09, Method:Compositional matrix adjust., Identities:33/61(54%), Positives:42/61(68%), Gaps:6/61(9%) Query 15635 HNVTSAPSAVRDGIRP------DRLYTPRSELTAEELRQFAAKRFTLGKIPLKPPPADML 15796 H S+ S RP + L+TP++EL+AEEL QF A+RFTLGKIPLKPPPAD+L Sbjct 387 HATASSTSLDGQSFRPSALNTTNSLFTPQNELSAEELAQFKAQRFTLGKIPLKPPPADLL 446 Query 15797 H 15799 + Sbjct 447 N 447 >RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-like protein 2 [Danio rerio] Sequence ID: Q6P0U9.1 Length: 414 Range 1: 377 to 412 Score:60.8 bits(146), Expect:4e-07, Method:Compositional matrix adjust., Identities:26/36(72%), Positives:32/36(88%), Gaps:0/36(0%) Query 15689 LYTPRSELTAEELRQFAAKRFTLGKIPLKPPPADML 15796 L+T SELT EEL++F AKRFTLG+IPL+PPPAD+L Sbjct 377 LFTANSELTPEELKEFMAKRFTLGQIPLRPPPADLL 412 >RecName: Full=Nucleoporin NUP42; AltName: Full=NLP-1; AltName: Full=Nucleoporin-like protein 2 [Mus musculus] Sequence ID: Q8CIC2.1 Length: 420 Range 1: 372 to 418 Score:60.5 bits(145), Expect:6e-07, Method:Compositional matrix adjust., Identities:26/47(55%), Positives:34/47(72%), Gaps:0/47(0%) Query 15656 SAVRDGIRPDRLYTPRSELTAEELRQFAAKRFTLGKIPLKPPPADML 15796 S + G + L+TPR +L EEL QF ++RFTLGKIPLKPPP ++L Sbjct 372 SVLASGAADNALFTPRDQLMKEELEQFQSQRFTLGKIPLKPPPVELL 418 Range 2: 120 to 149 Score:47.8 bits(112), Expect:0.005, Method:Compositional matrix adjust., Identities:20/30(67%), Positives:23/30(76%), Gaps:0/30(0%) Query 3262 IAKDMATWESSGQWMFSCYSPEKGKPNVPG 3351 I KD+ WESSGQWMFS YSP + KPN+ G Sbjct 120 IVKDVEVWESSGQWMFSVYSPVRKKPNISG 149 Range 3: 120 to 149 Score:46.2 bits(108), Expect:0.016, Method:Compositional matrix adjust., Identities:19/30(63%), Positives:23/30(76%), Gaps:0/30(0%) Query 33219 IAEDMATWESSGQWMFSCYSPEKGKPNVPG 33308 I +D+ WESSGQWMFS YSP + KPN+ G Sbjct 120 IVKDVEVWESSGQWMFSVYSPVRKKPNISG 149 Range 4: 120 to 149 Score:45.1 bits(105), Expect:0.035, Method:Compositional matrix adjust., Identities:19/30(63%), Positives:22/30(73%), Gaps:0/30(0%) Query 25386 IAEDMATWESSGQWMFSCYSPETGKPNVPG 25475 I +D+ WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDVEVWESSGQWMFSVYSPVRKKPNISG 149 Range 5: 120 to 149 Score:45.1 bits(105), Expect:0.035, Method:Compositional matrix adjust., Identities:19/30(63%), Positives:22/30(73%), Gaps:0/30(0%) Query 28059 IAEDMATWESSGQWMFSCYSPETGKPNVPG 28148 I +D+ WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDVEVWESSGQWMFSVYSPVRKKPNISG 149 Range 6: 120 to 149 Score:44.7 bits(104), Expect:0.044, Method:Compositional matrix adjust., Identities:19/30(63%), Positives:22/30(73%), Gaps:0/30(0%) Query 13309 IAEDMATWESSGQWMFSCYSPETGKPNVPG 13398 I +D+ WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDVEVWESSGQWMFSVYSPVRKKPNISG 149 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p10; Short=MA; Contains: RecName: Full=p20; Contains: RecName: Full=Capsid protein p25; Short=CA; Contains: RecName: Full=Nucleocapsid protein p14; Short=NC-pol; Contains: RecName: Full=Protease p15; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p90; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Walleye dermal sarcoma virus] Sequence ID: O92815.2 Length: 1752 Range 1: 800 to 871 Score:43.9 bits(102), Expect:8e-07, Method:Composition-based stats., Identities:21/73(29%), Positives:43/73(58%), Gaps:2/73(2%) Query 23790 KTHSPLNSPMWPVRKASGERRLTVH-CRGLHEVTPPLSAAVPHTSQLQDDPDSKAAKRYA 23614 K HSP N+P++P++KA + +H R ++ + PL+A V + + + + + + Sbjct 800 KCHSPCNTPIFPIKKAGRDEYRMIHDLRAINNIVAPLTAVVASPTTVLSNL-APSLHWFT 858 Query 23613 TTDIAHAFFSIPL 23575 D+++AFFS+P+ Sbjct 859 VIDLSNAFFSVPI 871 Range 2: 879 to 903 Score:36.2 bits(82), Expect:8e-07, Method:Compositional matrix adjust., Identities:16/25(64%), Positives:18/25(72%), Gaps:0/25(0%) Query 23567 FAFTRRGVQYTWDRLPQAWKHSPTV 23493 FAFT G QYTW LPQ + HSPT+ Sbjct 879 FAFTFEGHQYTWTVLPQGFIHSPTL 903 >RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-like protein 2 [Xenopus laevis] Sequence ID: Q5XGN1.2 Length: 491 Range 1: 453 to 489 Score:58.2 bits(139), Expect:4e-06, Method:Compositional matrix adjust., Identities:24/37(65%), Positives:31/37(83%), Gaps:0/37(0%) Query 15689 LYTPRSELTAEELRQFAAKRFTLGKIPLKPPPADMLH 15799 L+TPR+EL+ E+L QF AK+FTLGK P+KPP AD+L Sbjct 453 LFTPRNELSVEDLAQFEAKQFTLGKTPIKPPSADLLK 489 Range 2: 151 to 182 Score:44.7 bits(104), Expect:0.050, Method:Compositional matrix adjust., Identities:21/32(66%), Positives:22/32(68%), Gaps:0/32(0%) Query 3256 DRIAKDMATWESSGQWMFSCYSPEKGKPNVPG 3351 D I KDM WESSGQWMFS YS K K N+ G Sbjct 151 DDIMKDMEIWESSGQWMFSVYSMLKEKKNISG 182 >RecName: Full=Nucleoporin NUP42; AltName: Full=NLP-1; AltName: Full=NUP42 homolog; AltName: Full=Nucleoporin hCG1; AltName: Full=Nucleoporin-42; AltName: Full=Nucleoporin-like protein 2 [Homo sapiens] Sequence ID: O15504.1 Length: 423 Range 1: 120 to 149 Score:50.8 bits(120), Expect:5e-04, Method:Compositional matrix adjust., Identities:22/30(73%), Positives:23/30(76%), Gaps:0/30(0%) Query 3262 IAKDMATWESSGQWMFSCYSPEKGKPNVPG 3351 I KDM WESSGQWMFS YSP K KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 2: 120 to 149 Score:49.3 bits(116), Expect:0.002, Method:Compositional matrix adjust., Identities:21/30(70%), Positives:23/30(76%), Gaps:0/30(0%) Query 33219 IAEDMATWESSGQWMFSCYSPEKGKPNVPG 33308 I +DM WESSGQWMFS YSP K KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 3: 120 to 149 Score:47.4 bits(111), Expect:0.007, Method:Compositional matrix adjust., Identities:20/30(67%), Positives:22/30(73%), Gaps:0/30(0%) Query 25386 IAEDMATWESSGQWMFSCYSPETGKPNVPG 25475 I +DM WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 4: 120 to 149 Score:47.4 bits(111), Expect:0.007, Method:Compositional matrix adjust., Identities:20/30(67%), Positives:22/30(73%), Gaps:0/30(0%) Query 28059 IAEDMATWESSGQWMFSCYSPETGKPNVPG 28148 I +DM WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 5: 120 to 149 Score:47.0 bits(110), Expect:0.009, Method:Compositional matrix adjust., Identities:20/30(67%), Positives:22/30(73%), Gaps:0/30(0%) Query 13309 IAEDMATWESSGQWMFSCYSPETGKPNVPG 13398 I +DM WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 6: 122 to 149 Score:46.2 bits(108), Expect:0.015, Method:Compositional matrix adjust., Identities:19/28(68%), Positives:21/28(75%), Gaps:0/28(0%) Query 10809 EDMATWESSGQWMFSCYSPETGKPNVPG 10892 +DM WESSGQWMFS YSP KPN+ G Sbjct 122 KDMEVWESSGQWMFSVYSPVKKKPNISG 149 >RecName: Full=Nucleoporin NUP42; AltName: Full=Nucleoporin-like protein 2 [Pongo abelii] Sequence ID: Q5RB98.1 Length: 423 Range 1: 120 to 149 Score:50.8 bits(120), Expect:5e-04, Method:Compositional matrix adjust., Identities:22/30(73%), Positives:23/30(76%), Gaps:0/30(0%) Query 3262 IAKDMATWESSGQWMFSCYSPEKGKPNVPG 3351 I KDM WESSGQWMFS YSP K KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 2: 120 to 149 Score:49.3 bits(116), Expect:0.002, Method:Compositional matrix adjust., Identities:21/30(70%), Positives:23/30(76%), Gaps:0/30(0%) Query 33219 IAEDMATWESSGQWMFSCYSPEKGKPNVPG 33308 I +DM WESSGQWMFS YSP K KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 3: 120 to 149 Score:47.4 bits(111), Expect:0.006, Method:Compositional matrix adjust., Identities:20/30(67%), Positives:22/30(73%), Gaps:0/30(0%) Query 25386 IAEDMATWESSGQWMFSCYSPETGKPNVPG 25475 I +DM WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 4: 120 to 149 Score:47.4 bits(111), Expect:0.006, Method:Compositional matrix adjust., Identities:20/30(67%), Positives:22/30(73%), Gaps:0/30(0%) Query 28059 IAEDMATWESSGQWMFSCYSPETGKPNVPG 28148 I +DM WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 5: 120 to 149 Score:47.0 bits(110), Expect:0.009, Method:Compositional matrix adjust., Identities:20/30(67%), Positives:22/30(73%), Gaps:0/30(0%) Query 13309 IAEDMATWESSGQWMFSCYSPETGKPNVPG 13398 I +DM WESSGQWMFS YSP KPN+ G Sbjct 120 IVKDMEVWESSGQWMFSVYSPVKKKPNISG 149 Range 6: 121 to 149 Score:46.2 bits(108), Expect:0.014, Method:Compositional matrix adjust., Identities:19/29(66%), Positives:21/29(72%), Gaps:0/29(0%) Query 10806 AEDMATWESSGQWMFSCYSPETGKPNVPG 10892 +DM WESSGQWMFS YSP KPN+ G Sbjct 121 VKDMEVWESSGQWMFSVYSPVKKKPNISG 149 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [HTLV-1 isolate Mel 15] Sequence ID: P0C211.2 Length: 1462 Range 1: 605 to 690 Score:40.8 bits(94), Expect:0.003, Method:Compositional matrix adjust., Identities:30/88(34%), Positives:42/88(47%), Gaps:7/88(7%) Query 23823 ACQQDARAASKKTH-----SPLNSPMWPVRKASGERRLTVHCRGLHEVTPPLSAAVPHTS 23659 A Q R A + H P N+P++PV+KA+G R R + +T LS++ P Sbjct 605 ALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTVDLSSSSPGPP 664 Query 23658 QLQDDPDSKAAKRYATTDIAHAFFSIPL 23575 L P + A T D+ AFF IPL Sbjct 665 DLSSLPTTLA--HLQTIDLKDAFFQIPL 690 Range 2: 711 to 729 Score:26.9 bits(58), Expect:0.003, Method:Compositional matrix adjust., Identities:10/19(53%), Positives:14/19(73%), Gaps:0/19(0%) Query 23549 GVQYTWDRLPQAWKHSPTV 23493 G +Y W LPQ +K+SPT+ Sbjct 711 GTRYAWKVLPQGFKNSPTL 729 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (strain ATK)] Sequence ID: P03362.3 Length: 1462 Range 1: 605 to 690 Score:40.8 bits(94), Expect:0.003, Method:Compositional matrix adjust., Identities:30/88(34%), Positives:42/88(47%), Gaps:7/88(7%) Query 23823 ACQQDARAASKKTH-----SPLNSPMWPVRKASGERRLTVHCRGLHEVTPPLSAAVPHTS 23659 A Q R A + H P N+P++PV+KA+G R R + +T LS++ P Sbjct 605 ALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPP 664 Query 23658 QLQDDPDSKAAKRYATTDIAHAFFSIPL 23575 L P + A T D+ AFF IPL Sbjct 665 DLSSLPTTLA--HLQTIDLRDAFFQIPL 690 Range 2: 711 to 729 Score:26.9 bits(58), Expect:0.003, Method:Compositional matrix adjust., Identities:10/19(53%), Positives:14/19(73%), Gaps:0/19(0%) Query 23549 GVQYTWDRLPQAWKHSPTV 23493 G +Y W LPQ +K+SPT+ Sbjct 711 GTRYAWKVLPQGFKNSPTL 729 >RecName: Full=Gag-Pro-Pol polyprotein; AltName: Full=Pr160Gag-Pro-Pol; Contains: RecName: Full=Matrix protein p19; Short=MA; Contains: RecName: Full=Capsid protein p24; Short=CA; Contains: RecName: Full=Nucleocapsid protein p15-pro; Short=NC'; Short=NC-pro; Contains: RecName: Full=Protease; Short=PR; Contains: RecName: Full=p1; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p49 subunit; Short=p49 RT; Contains: RecName: Full=Reverse transcriptase/ribonuclease H, p62 subunit; Short=p62 RT; Contains: RecName: Full=Integrase; Short=IN [Human T-cell lymphotrophic virus type 1 (Caribbean isolate)] Sequence ID: P14078.3 Length: 1462 Range 1: 605 to 690 Score:41.2 bits(95), Expect:0.004, Method:Compositional matrix adjust., Identities:30/88(34%), Positives:42/88(47%), Gaps:7/88(7%) Query 23823 ACQQDARAASKKTH-----SPLNSPMWPVRKASGERRLTVHCRGLHEVTPPLSAAVPHTS 23659 A Q R A + H P N+P++PV+KA+G R R + +T LS++ P Sbjct 605 ALQHLVRKALEAGHIEPYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPP 664 Query 23658 QLQDDPDSKAAKRYATTDIAHAFFSIPL 23575 L P + A T D+ AFF IPL Sbjct 665 DLSSLPTTLA--HLQTIDLKDAFFQIPL 690 Range 2: 711 to 729 Score:26.6 bits(57), Expect:0.004, Method:Compositional matrix adjust., Identities:10/19(53%), Positives:14/19(73%), Gaps:0/19(0%) Query 23549 GVQYTWDRLPQAWKHSPTV 23493 G +Y W LPQ +K+SPT+ Sbjct 711 GTRYAWRVLPQGFKNSPTL 729