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                                  ---  PhyML 3.3.20190909  ---                                             
                              http://www.atgc-montpellier.fr/phyml                                          
                             Copyright CNRS - Universite Montpellier                                 
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. Sequence filename: 			cds_13_alignment.phylip
. Data set: 				#1
. Initial tree: 			BioNJ
. Model of amino acids substitution: 	LG
. Number of taxa: 			19
. Log-likelihood: 			-23547.72193
. Unconstrained log-likelihood: 	-12820.10008
. Composite log-likelihood: 		-100673.70937
. Parsimony: 				3921
. Tree size: 				10.40049
. Discrete gamma model: 		Yes
  - Number of classes: 			4
  - Gamma shape parameter: 		1.422
  - Relative rate in class 1: 		0.21297 [freq=0.250000] 		
  - Relative rate in class 2: 		0.57498 [freq=0.250000] 		
  - Relative rate in class 3: 		1.04547 [freq=0.250000] 		
  - Relative rate in class 4: 		2.16659 [freq=0.250000] 		

. Run ID:				none
. Random seed:				1585218412
. Subtree patterns aliasing:		no
. Version:				3.3.20190909
. Time used:				0h1m26s (86 seconds)

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 Suggested citations:
 S. Guindon, JF. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, O. Gascuel
 "New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0."
 Systematic Biology. 2010. 59(3):307-321.

 S. Guindon & O. Gascuel
 "A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
 Systematic Biology. 2003. 52(5):696-704.
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