# cmscan :: search sequence(s) against a CM database
# INFERNAL 1.1.2 (July 2016)
# Copyright (C) 2016 Howard Hughes Medical Institute.
# Freely distributed under a BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:                   infernal_cmscan-I20200322-200609-0085-17126436-p2m.upfile
# target CM database:                    /nfs/public/ro/es/newdata/prod/flatfiles/rfam/rfam
# tabular output of hits:                infernal_cmscan-I20200322-200609-0085-17126436-p2m.tblout
# max ASCII text line length:            unlimited
# model-specific thresholding:           GA cutoffs
# Filters set as if DB size in Mb is:    5.000000
# HMM-only mode for 0 basepair models:   no
# number of worker threads:              4 [--cpu]
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       strain  [L=21000]
Description: 3443-3Ac 26
Hit scores:
 rank     E-value  score  bias  modelname  start    end   mdl trunc   gc  description
 ----   --------- ------ -----  --------- ------ ------   --- ----- ----  -----------

   [No hits detected that satisfy reporting thresholds]


Hit alignments:

   [No hits detected that satisfy reporting thresholds]


Internal CM pipeline statistics summary:
----------------------------------------
Query sequence(s):                                               1  (42000 residues searched)
Query sequences re-searched for truncated hits:                  1  (733.0 residues re-searched, avg per model)
Target model(s):                                              3016  (385945 consensus positions)
Windows   passing  local HMM SSV           filter:          396299  (0.4911); expected (0.35)
Windows   passing  local HMM Viterbi       filter:                  (off)
Windows   passing  local HMM Viterbi  bias filter:                  (off)
Windows   passing  local HMM Forward       filter:           54575  (0.09923); expected (0.005)
Windows   passing  local HMM Forward  bias filter:           18948  (0.03558); expected (0.005)
Windows   passing glocal HMM Forward       filter:            8458  (0.02359); expected (0.005)
Windows   passing glocal HMM Forward  bias filter:            6489  (0.01604); expected (0.005)
Envelopes passing glocal HMM envelope defn filter:            7267  (0.007916); expected (0.005)
Envelopes passing  local CM  CYK           filter:            1041  (0.0007964); expected (0.0001)
Total CM hits reported:                                          0  (0); includes 0 truncated hit(s)

# CPU time: 485.72u 15.44s 00:08:21.16 Elapsed: 00:02:22.00
//
[ok]