Database and Motifs High-scoring Motif Occurences Debugging Information Results in TSV Format Results in GFF3 Format


FIMO - Motif search tool

FIMO version 5.1.1, (Release date: Wed Jan 29 15:00:42 2020 -0800)

For further information on how to interpret these results please access http://meme-suite.org//doc/fimo-output-format.html.
To get a copy of the FIMO software please access http://meme-suite.org

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE 26.fasta
Database contains 1 sequences, 21000 residues

MOTIFS regtransbase.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
ABC0302_Bacilliales 20 AAATAACAACGTTGTTATAA
ABC1168_Bacillus_Burkholderia_Rhodobacteriales 20 TTTTGCATACGTATGCAAAA
AglR_Rhizobiales 20 CTCCTGCAACGTTACAGTTA
AlgR_Rhodobacterales_Rhizobiales 20 AATTCAAAGCGCTTTGGATT
AraC_Enterobacteriales 38 TAGCAAATTTATCCATAATTTTAGCGGATACATCCTGA
ArcA_Gammaproteobacteria 15 TAACATTTAGTTAAC
AscG_Escherichia_Shigella 20 TTAGGTAACCGGTTTCACAA
Atu3062_Alphaproteobacteria_Pseudomonas 20 CTTGTAAACCGGTTTACTAA
Atu4556_Rhizobiales 20 TAATGAAAATATTTTCATGA
Atu5007_Rhodobacterales_Rhizobiales 20 CAAAGAGACCGGTCTCAGTA
Atu5393_Rhizobiales 20 TAACGGGAACGTTCCCATTA
BB0548_Burkholderiales 20 ATAGGAAAACGTTTCCATAT
BCAM1716_Burkholderiales_Actinomycetales 20 TTAGTGAATCGATACAGTAG
BCAS0099_Burkholderiales_Rhodobacterales 20 AAATGAAAGCGCTTACATTC
BH1250_Bacillaceae_Lactobacillaceae 20 ATATGAAATCGATTCCATAT
BH3692_Bacilli_Clostridia 20 TAACCGAAACGTTTTGGATG
bll3974_Rhizobiales 20 TAATGACAACGTTACCATCA
BT0487_Bacteroides 20 TTTTGTGCCCGCACACACTA
CcpA_Bacilli 16 TTGAAAGCGTTTTCAA
CelR_Actinomycetales 20 CAGTGGGAGCGCTCCCATAC
CMS2952_Streptomyces 20 ATCTGACAACGTTGTCCAGG
Crp_Gammaproteobacteria 22 AAATGTGATCTAAATCACAATA
CscR_Gammaproteobacteria 20 AAAAGTTAACGTTAACATTT
CtsR_Firmicutes 17 GGTCAAAAATGGTCAAA
DasR_Streptomycineae 16 ACTGGTCTAGACCACT
DeoR_Enterobacteriales 16 TGTTAGAATACTAACA
DR2501_Deinococcus 20 AGACTGAATCGTTTCAGTTG
ECA2487_Gammaproteobacteria 20 AATGGAAAACGGTTTCCGTA
ECA3649_Erwinia 20 ATTTTTGGTATGCCAAAAGC
ExuR_Bacilli_Clostridia 20 AAATGTTAACGTTAACAAAA
FadR_Gammaproteobacteria 17 AGCTGGTACGATCAGTT
FixK_FnrN_Rhizobiales 14 TTGACCGGGCGCAA
Fnr_Gammaproteobacteria 14 TTGATATACATCAA
FruR_Alpha_Beta_Xanthomonadales 20 GAGTGGGAACGATTCCACTG
FruR_Gammaproteobacteria 16 GCTGAATCGTTTAAGT
FruR_Vibrionales_Pseudomonadales 20 TTGCTGAATCGTTTCAGCTT
GalR_Gammaproteobacteria 16 ATGTAAACGCTTCCAC
GalRS_Gammaproteobacteria 20 TAGTGAAAGCGGTTACACTC
GntR_Alphaproteobacteria_Alteromonadales 20 AAATGATAGCGCTACCATAT
GntR_Gammaproteobacteria 20 TAATGTTACCCGTAACATAT
GntR_Pseudomonadales_Burkholderiales 20 CTAAGATAGCGCTGTCTCAA
GntR_Rhodobacterales 20 CACTGTTAGCGCTAACATGC
IscR_Beta_Gamma 25 ATACTTGACTAAATTACTCGGGTAT
IscR_Rhodospirillaceae_Rhodobacterales 19 CTTGACGAATTTTCTCGGA
IscR_Rhodospirillales_Sphingomonadales 19 TCGGACCAATTCAGTCTTG
IscR_Rickettsiales 19 ATTGTAGATATAAAACAAT
KdgR_Bacillaceae 20 TTACTAAATCGATTTAGTAC
LacI_Enterobacteriales 21 AAATGTGAGCGAATAACAATT
LacI_Yersinia 21 TAATGTATTACGTTCACATAA
LJ0739_Lactobacillus 20 TATTTGAAACGTTTTAAGTT
LldR_Enterobacteriales 21 AAAATTGGCCCTACCAATTTT
LMO0535_Enterococcaceae_Listeriaceae 20 ACCTGTAATGCATTACATAA
lmo0734_Listeria_Symbiobacterium 20 AAGGGAAAACGTTTACTCAT
LMO1727_Enterococcaceae_Listeriaceae 20 TAATAGAAACGTTTCGACAA
MalI_Enterobacteriales 20 AAGATAAAACGTTTTATCAA
MalR_Bacillaceae 20 TTATGCAAACGTTTTCATTA
MalR_Clostridiales_Thermoanaerobacteriales 20 TTGGGCAAACGTTTGCACAA
MalR_Clostridium_perfringens 20 AATTGGTAACGTTACCGAAA
MalR_Lactobacillales 20 TTACGCAAGCGGTTGCATAA
MalR_Pediococcus_Leuconostoc 20 TAATGCAAGCGTTTGCACAA
MalR_Staphylococcus 20 TTGTGCAAACGTTTGCATAA
MalR_Streptococcus_pneumoniae 20 AAACGCAAACGTTTGCGTTA
MarA_Enterobacteriales 20 ATGGCACGAAATACCAAATC
McbR_Corynebacterium 16 TAGACAGCTTGGTCTA
mlr8213_Mesorhizobium_Streptomyces 20 AAACGCTTGCGCAAGCGTTT
ModE_Gammaproteobacteria 26 TCGTTATATATTCAAATATATAACGA
MsmR_Lactobacillales 20 AAAATGAAACGTTTCAAAAA
MtaR_Streptococcaceae 17 TATAGTTTAAAACTATA
NadR_Enterobacteriales 18 TGTTTAGTATATTAAACA
NagC_Gammaproteobacteria 23 CTTATTTTACGATGCAAAAAAAT
NagQ_a_b_g_Proteobacteria 18 TGGTATTTTTTTGGTATT
NagR_Xanthomonadales_Alteromonadales 18 ATTGACAACGTTGTCATT
NarP_Gammaproteobacteria 16 TACCTCTTAAGAGGTA
NrdR_Firmicutes 16 ACACAATATATAGTAT
NrdR_Proteobacteria 16 CCCCTATATCTTGTGT
NtdR_Bacillales 20 TTATGTTATCGATTACATGT
PckR_Rhizobiales 20 AGATTTAATCGATTTAAATC
PdhR_Gammaproteobacteria 21 AAAATTGGTATGACCAATTGA
PsrA_Proteobacteria 20 TTTCAAACAACTGTTTGATT
PtxS_Burkholderiales_Pseudomonadales 20 AAATGGAACCGGTTCCATCG
PurR_Enterobacteriales_Pasteurellales_Vibrionales 16 AGGAAAACGTTTGCGT
RafR_Enterobacteriales 20 AAACCTAAACGTTTCGGATG
RBPS06636_Burkholderia 20 AATTCAAACCGGTTTGGACA
RbsR_Actinomycetales 20 TGATGCAAACGATTACATTA
RbsR_Bacillales_Lactobacillales 20 TTCTGTAAACGGTTACATAA
RbsR_Bacilli 20 TTGGTAAAACGTTTTACTAA
RbsR_Burkholderiales_Pseudomonadales 20 CTACGCAAACGTTTGCGCGT
RbsR_Clostridia 20 ATAGTTAACCGGTTCAGTGA
RbsR_Enterobacteriales_Pasteurellales_Vibrionales 20 TCATCGAAACGTTTCGCTGA
RbsR_Streptomycetaceae_Rubrobacteraceae 20 CCGTGTAATCGTTTCCAATA
RbtR_Rhizobiales_Rhodobacterales 20 TTGCACAATCGATAGTGCAA
RegR_Streptococcus 20 TTAGTAAACCGGTTTACTTT
Reut_C5892_Burkholderiales 20 TAATGACTACGTATTCAAAG
Rfer_1112_Burkholderiales 20 AAATGGAATCCTTTCCAAAT
RKP05499_Bacteria 20 AAATGTAATCGATTACAATA
RL4253_Rhodobacterales_Rhizobiales 20 AATTTAAAACGTTTTAATTC
RPU04121_Methylophilales_Pseudomonadales 20 CTTTGTTAGCGCTAACATCG
RSc0472_Burkholderiales 16 TAGAACGATCGTTCAA
RSc1790_Burkholderiales_Pseudomonadales 20 CGATGAAAACGTTTTCAAGC
SAV7156_Actinomycetales 20 CAATTGGAGCGCTCCAAAAC
SCO0806_Actinomycetales 20 TAGTTGAAACGTTTCAGGAC
SCO2753_Actinomycetales 20 CATAGAAAGCGCTTTCCGAA
SCO7411_Actinobacteridae 20 TTATGTTTACGTAAACATCT
ScrR_Bacilli 20 TATGTCAAGCGTTTAACATA
ScrR_Firmicutes_Burkholderiales 20 ATTTGGAACCGGTTCCATTT
ScrR_Gammaproteobacteria 20 TAGATAAATCGGTTTAGCTA
SMA1711_Rhodobacterales_Rhizobiales 20 GTTTGCAACCGGTTGCAAAA
SMA2527_Enterobacteriales_Oceanospirillales 20 AAATGACAACGTAAACATTG
SMb20537_Rhizobiales 20 ACAATGCAAATTTGCAAGAA
SMb20667_Rhizobiales 20 AATTGGCAGCGCTGCCAAAA
SMb20717_Alphaproteobacteria 20 CTATGTAAACCTTTACATTG
SMb21272_Rhizobiales 20 CTGATTAATCGTTTAATCAG
SMb21372_Rhizobiales_Rhodobacterales 20 ATCTTTACGCGCGTAAACTT
SMb21598_Rhizobiales 20 TTCCGTAAACGTTTACGACG
SMb21706_Rhizobiales 20 TTGAGAAAACCTTTTCTCAG
SMc04401_Alpha_Gamma 20 AAATTGGAACGTTCCAATTA
SO3516_Alteromonadales 20 AAATGACAGCGTTGTCATTA
SPOA0242_Alpha_Burkholderiales 20 CTATGTTACCGATAACATTC
SPy1297_Streptococcus 20 TAACTTAAACGTTTAAGTTT
SssR_Proteobacteria 16 TTTACGTTAACGTAAA
STM1555_Enterobacteriales_Vibrionales 20 TCATGTAACCGCTTACATGA
STM3633_Alpha_Gamma 20 CCATTAAAACGTTTTAATGA
STM3696_Enterobacteriales_Burkholderiales 20 AAATGATTGCGCTATCATTT
TnrA_Bacilli 17 TGTAAGATTTTCTGACA
TreR_Gammaproteobacteria 20 TTTTGGGAACGTTCCCATTT
VC1286_Vibrionales_Enterobacteriales 20 AAATGAAAGCGGTTTCATTT
VCA0673_Vibrionales 20 AAATGGTTACGTATTCATTT
VP2396_Vibrio_Yersinia 20 AATATATTAGCTAATAAACT
XCC2209_Xanthomonadaceae 20 ACATGTAATCGTTTTCACAA
XCC2464_Alteromonadales_Xanthomonadales_Sphingomonadales 20 TTTTGAATACGTATGCAGGG
XCC3356_Alpha_Gamma 20 GATTGCAATCGATTGTAATG
XylR_Bacillus_Clostridium_group 23 GTTAGTTTATTGATTAAACAAAC
XylR_Gammaproteobacteria 38 ACGAAAAATCGTAATAGAAGTGTAAAATAACATAATTG
XylR_Rhizobiales 20 TTTGATTTACGTACCTCAAT
XylR_Rhodobacteriales_Rhizobiales 23 TTTTTTTCGAGACTCGAAAAAAT
YcjW_Listeriaceae_Enterobacteria 20 CAATGGGACCGCTACCACGA
YE2053_Rhizobiales_Burkholderiales_Yersinia 20 AATTGCACACGTGTGCAAAA
YE3589_Yersinia_Streptomyces 20 CTATCTACGCGCGTAGACGC
YPO0846_Enterobacteriales 20 AAATGAAAAAATTTTCATAA
YPO2568_Gammaproteobacteria 20 AAATGATAGCGCTATCAGAT
YvdE_Bacilli 20 TTTTGTTACCGGTAACATGT

Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
LJ0739_Lactobacillus strain + 19021 19040 2.57e-08 0.000787 TGCTTGAAAGGTTTAAAAAT
DeoR_Enterobacteriales strain + 19835 19850 1.25e-07 0.0044 TGTTATAATAGTAACA
ABC0302_Bacilliales strain + 18100 18119 3.58e-07 0.0114 AAATAACATGCTTGTTAAAA
NagC_Gammaproteobacteria strain + 1755 1777 3.64e-07 0.0105 TGCATTTTGTGTTGCAAAATTAT
IscR_Beta_Gamma strain + 20781 20805 4.73e-07 0.015 ATTGTTGACGAATTTTGTTAATTAT
XylR_Gammaproteobacteria strain + 3079 3116 6.98e-07 0.0199 CGTATAATACGGCATATAGAGATGAATTATCAAAATTG
GntR_Gammaproteobacteria strain + 8842 8861 9.35e-07 0.0324 AAGTGTTGCCCGTATAATAA
SMb21706_Rhizobiales strain - 3566 3585 1.35e-06 0.0487 ATGACAAAAGCTTTTCTTTA
VP2396_Vibrio_Yersinia strain - 12344 12363 1.36e-06 0.0289 AATATTTTAGCCAATGTTTT
ModE_Gammaproteobacteria strain + 17368 17393 1.36e-06 0.0376 TTATTATATGGGAAAAAATATATTCA
MalR_Streptococcus_pneumoniae strain - 8100 8119 1.41e-06 0.055 AGATGAAAAGCTTTTCTTTG
IscR_Beta_Gamma strain + 2297 2321 1.81e-06 0.0286 TTAATTGAAGAAATCAGTAGAAAAA
XylR_Bacillus_Clostridium_group strain - 12149 12171 1.82e-06 0.0583 TTTTGTTTATTATTCAAACCAAT
NagC_Gammaproteobacteria strain - 20875 20897 1.97e-06 0.0285 CCTATTTTTTAAAAAAAATAAAA
IscR_Rickettsiales strain + 1837 1855 2e-06 0.0472 ATTGTGGATATAAAGCCTT
VP2396_Vibrio_Yersinia strain + 2737 2756 2.24e-06 0.0289 AATATATTATCTGAAAATAA
DeoR_Enterobacteriales strain - 2810 2825 2.28e-06 0.0402 TGTAAGCAATGCAACA
RbtR_Rhizobiales_Rhodobacterales strain - 16562 16581 2.43e-06 0.0907 GTCCTTAATCGATATTGCAA
ECA3649_Erwinia strain - 12948 12967 2.46e-06 0.0814 CTTTTTGGTATACCTTTAAG
IscR_Rickettsiales strain + 18603 18621 2.93e-06 0.0472 ATAGAAGATATAAAAAAAA
PckR_Rhizobiales strain + 6224 6243 3.01e-06 0.0957 TTTTTTAAACCATTTAGTAC
VP2396_Vibrio_Yersinia strain + 12344 12363 3.11e-06 0.0289 AAAACATTGGCTAAAATATT
MalR_Bacillaceae strain - 12504 12523 3.14e-06 0.118 TTGGGCAAATGTTTTCCATG
MalR_Clostridium_perfringens strain + 13787 13806 3.17e-06 0.0567 TACTGGAAACGGTACAGGAA
MalR_Clostridium_perfringens strain + 13826 13845 3.17e-06 0.0567 TACTGGAAACGGTACAGGAA
RKP05499_Bacteria strain + 15013 15032 3.32e-06 0.104 AAATGAAAGAGGTAACAAAT
SMb20667_Rhizobiales strain - 6293 6312 3.34e-06 0.14 CAATGACACCTCTTCCAAAA
FruR_Gammaproteobacteria strain + 17137 17152 3.42e-06 0.14 GCTGAAACCATAATAG
XylR_Bacillus_Clostridium_group strain + 12149 12171 3.68e-06 0.059 ATTGGTTTGAATAATAAACAAAA
ArcA_Gammaproteobacteria strain - 19302 19316 4.13e-06 0.0962 TAACAATTTGTTAAT
XylR_Gammaproteobacteria strain + 6972 7009 4.15e-06 0.0446 GGAAAATATGGAAAAGTCAGGACTAAAAAATATAAATA
MsmR_Lactobacillales strain - 17425 17444 4.17e-06 0.0973 TAAATGAAACTTTTCCTATA
MalR_Streptococcus_pneumoniae strain - 15810 15829 4.22e-06 0.0825 AAATGCAAGGGTATTTTTTA
SCO0806_Actinomycetales strain + 10107 10126 4.48e-06 0.188 TAAGTGAAAGGATTGAAGCG
YPO0846_Enterobacteriales strain + 2773 2792 4.54e-06 0.148 ATATGAAAAACATATCATCA
NadR_Enterobacteriales strain + 12151 12168 4.69e-06 0.152 TGGTTTGAATAATAAACA
VP2396_Vibrio_Yersinia strain + 2499 2518 4.74e-06 0.0289 AAAATATAATTTAATAAATA
LJ0739_Lactobacillus strain - 15214 15233 4.86e-06 0.0744 TATTAACAACGTTTAATATT
AraC_Enterobacteriales strain - 14126 14163 5.01e-06 0.108 GAGCAAATAAATATATATAATTGGCATTTTGTACGTCT
ScrR_Bacilli strain + 18301 18320 5.07e-06 0.188 TATGTATAAGGATTTTTATA
VP2396_Vibrio_Yersinia strain - 604 623 5.1e-06 0.0289 AATTTTTTAGCTGAGGATAT
CtsR_Firmicutes strain + 4352 4368 5.48e-06 0.196 AGTCAATAATCATCAAT
CcpA_Bacilli strain + 15015 15030 5.55e-06 0.176 ATGAAAGAGGTAACAA
Atu4556_Rhizobiales strain + 802 821 5.56e-06 0.165 TGATAAAAATGTTTACACAT
NtdR_Bacillales strain - 5033 5052 5.8e-06 0.201 ATCTGAATTCTATTCCATCT
RbsR_Bacillales_Lactobacillales strain - 5051 5070 5.92e-06 0.203 ATGTGGGTACGCTTATATAT
MsmR_Lactobacillales strain + 20222 20241 5.98e-06 0.0973 AAATTGCAAAGTTACAATGA
XylR_Bacillus_Clostridium_group strain + 871 893 6.03e-06 0.0645 GGTAGTTGATTATCTTGAAAAAT
Rfer_1112_Burkholderiales strain - 13856 13875 6.14e-06 0.2 TATTGGAATTGCTTCCAGAG
PckR_Rhizobiales strain - 6585 6604 6.33e-06 0.101 TATTTTAATCCATTGATTAT
SMb20717_Alphaproteobacteria strain + 14231 14250 6.37e-06 0.216 TTAAGTAAAACATTACATTG
ArcA_Gammaproteobacteria strain + 19304 19318 6.46e-06 0.0962 TAACAAATTGTTAAG
DeoR_Enterobacteriales strain + 2131 2146 6.53e-06 0.0769 TGTCATAAATATACCA
VCA0673_Vibrionales strain + 1622 1641 6.58e-06 0.223 AAAGGGTTACACACTTAATT
AraC_Enterobacteriales strain - 18833 18870 6.58e-06 0.108 AAATCATTTTGACCTTATCAATAATATATTTAACCTTA
PtxS_Burkholderiales_Pseudomonadales strain + 6293 6312 6.95e-06 0.214 TTTTGGAAGAGGTGTCATTG
NagC_Gammaproteobacteria strain - 923 945 6.99e-06 0.0506 GGTTTTTTATCATTAGAAATATT
NagC_Gammaproteobacteria strain - 20432 20454 7.02e-06 0.0506 TTAAATTTTGCTTTGAAAATATT
XylR_Gammaproteobacteria strain - 3745 3782 7.71e-06 0.0446 ATATAAAACCTTACCTACATAATAACAATCAGCAATTG
RL4253_Rhodobacterales_Rhizobiales strain - 1273 1292 8.13e-06 0.109 GATATAAAACCTTACCTGTC
MalR_Clostridiales_Thermoanaerobacteriales strain + 12504 12523 8.24e-06 0.271 CATGGAAAACATTTGCCCAA
BH1250_Bacillaceae_Lactobacillaceae strain - 5033 5052 8.27e-06 0.249 ATCTGAATTCTATTCCATCT
SMb21706_Rhizobiales strain + 3566 3585 8.46e-06 0.153 TAAAGAAAAGCTTTTGTCAT
bll3974_Rhizobiales strain - 19193 19212 8.91e-06 0.23 CAATAGCAACTTTATAATCA
YPO0846_Enterobacteriales strain - 17773 17792 9.07e-06 0.148 TTTTAACAGCATTCTGATAT
YvdE_Bacilli strain - 17782 17801 9.08e-06 0.322 TGCTGTTATTTTTAACAGCA
ABC0302_Bacilliales strain + 17773 17792 9.17e-06 0.114 ATATCAGAATGCTGTTAAAA
CscR_Gammaproteobacteria strain + 18193 18212 9.18e-06 0.155 AAAAATAAAAGTTAACATAG
PdhR_Gammaproteobacteria strain - 19176 19196 9.23e-06 0.164 ATCATTTGTCATACCCATCGA
CscR_Gammaproteobacteria strain - 676 695 9.65e-06 0.155 CAGGTTTAACATCAATAATT
Atu4556_Rhizobiales strain - 2773 2792 9.66e-06 0.165 TGATGATATGTTTTTCATAT
Fnr_Gammaproteobacteria strain - 3556 3569 9.73e-06 0.357 TTTATCTATATCAA
IscR_Beta_Gamma strain - 2470 2494 9.93e-06 0.105 TTAATTGAATTATATACTTAAATTC
LMO0535_Enterococcaceae_Listeriaceae strain - 14231 14250 1.01e-05 0.32 CAATGTAATGTTTTACTTAA
Rfer_1112_Burkholderiales strain - 781 800 1.02e-05 0.2 ATGTGGATAACTTTCCATAG
XylR_Gammaproteobacteria strain - 20405 20442 1.03e-05 0.0446 TTGAAAATATTCAATTTCTTTTTTAAATTTTCTAATTC
XylR_Gammaproteobacteria strain + 20402 20439 1.04e-05 0.0446 ACGGAATTAGAAAATTTAAAAAAGAAATTGAATATTTT
XylR_Bacillus_Clostridium_group strain + 5488 5510 1.05e-05 0.0843 TTTTGTTGGACGAACCGACAAGC
SMb20537_Rhizobiales strain - 13030 13049 1.06e-05 0.25 ACAAATTATACTTGCAAGAA
ABC0302_Bacilliales strain + 15214 15233 1.07e-05 0.114 AATATTAAACGTTGTTAATA
MtaR_Streptococcaceae strain - 3254 3270 1.08e-05 0.354 CATAACTTAAAACTACA
NagC_Gammaproteobacteria strain + 20875 20897 1.08e-05 0.0506 TTTTATTTTTTTTAAAAAATAGG
GntR_Gammaproteobacteria strain + 12745 12764 1.09e-05 0.188 AACTAATGCCGGTAAAAATA
XylR_Gammaproteobacteria strain + 18076 18113 1.09e-05 0.0446 TGAAAAAAATGGCAATTTAAAGCAAAATAACATGCTTG
PtxS_Burkholderiales_Pseudomonadales strain + 8508 8527 1.1e-05 0.214 TATTTGAACCGGTGGTATCT
XylR_Gammaproteobacteria strain + 17181 17218 1.1e-05 0.0446 AATATTATATATAAACGTATAGATATAAAAGGCAAGTG
DeoR_Enterobacteriales strain - 191 206 1.1e-05 0.0975 TGTTATAATATCAATA
RafR_Enterobacteriales strain + 11525 11544 1.11e-05 0.204 AAATTAAAACTTTAAGGAGG
RafR_Enterobacteriales strain + 19224 19243 1.11e-05 0.204 AATATTATACGTATAGGAAC
MalR_Clostridium_perfringens strain - 13856 13875 1.11e-05 0.133 TATTGGAATTGCTTCCAGAG
GalRS_Gammaproteobacteria strain + 802 821 1.13e-05 0.326 TGATAAAAATGTTTACACAT
RL4253_Rhodobacterales_Rhizobiales strain + 18242 18261 1.14e-05 0.109 GTTTTAAAAGTTTATAAAAC
ECA3649_Erwinia strain - 2033 2052 1.15e-05 0.159 AATATTGGCATAACACAAGA
NagC_Gammaproteobacteria strain + 17303 17325 1.16e-05 0.0506 ATTAATTTATGCTTAAAAACTTA
KdgR_Bacillaceae strain + 16562 16581 1.19e-05 0.432 TTGCAATATCGATTAAGGAC
RL4253_Rhodobacterales_Rhizobiales strain - 19021 19040 1.2e-05 0.109 ATTTTTAAACCTTTCAAGCA
SMc04401_Alpha_Gamma strain + 15095 15114 1.2e-05 0.415 AGCTTATAAGGATCCAAACA
NagC_Gammaproteobacteria strain + 6699 6721 1.22e-05 0.0506 TTCATTTAATATGAGGAAAAAAA
LldR_Enterobacteriales strain + 1241 1261 1.24e-05 0.358 AATATTGATAATGCCATTGCT
LJ0739_Lactobacillus strain + 8916 8935 1.3e-05 0.132 TAATTGAAACGATTATGGAT
PckR_Rhizobiales strain - 3407 3426 1.3e-05 0.138 GTTTCTTATCGTTTGGAATC
RbsR_Bacillales_Lactobacillales strain + 1616 1635 1.31e-05 0.203 ATATTGAAAGGGTTACACAC
VCA0673_Vibrionales strain - 7244 7263 1.33e-05 0.223 AAATGGATAAATAATCATAT
NrdR_Firmicutes strain - 15231 15246 1.34e-05 0.339 CCACATAATCTTGTAT
NagQ_a_b_g_Proteobacteria strain + 7062 7079 1.34e-05 0.287 TGGTTTTGACCTTGTATT
LMO1727_Enterococcaceae_Listeriaceae strain - 3843 3862 1.35e-05 0.247 TCATATAAAGGTTTCCCATA
GntR_Rhodobacterales strain - 14014 14033 1.37e-05 0.382 TGGTTTTACCGCTACCTCAT
PdhR_Gammaproteobacteria strain + 1241 1261 1.38e-05 0.164 AATATTGATAATGCCATTGCT
RbtR_Rhizobiales_Rhodobacterales strain + 12831 12850 1.43e-05 0.267 TTGCCAAATGGATGTATCCT
PurR_Enterobacteriales_Pasteurellales_Vibrionales strain + 12506 12521 1.43e-05 0.602 TGGAAAACATTTGCCC
ABC1168_Bacillus_Burkholderia_Rhodobacteriales strain - 6749 6768 1.44e-05 0.28 TGGTGCAAATTTATTCCAAA
RKP05499_Bacteria strain - 14231 14250 1.45e-05 0.219 CAATGTAATGTTTTACTTAA
BB0548_Burkholderiales strain + 12504 12523 1.45e-05 0.471 CATGGAAAACATTTGCCCAA
ModE_Gammaproteobacteria strain - 17640 17665 1.47e-05 0.15 TAATTCTTTTAATTTATTTTTATCCA
ArcA_Gammaproteobacteria strain - 20051 20065 1.47e-05 0.146 TAACATTTTATCCAC
TnrA_Bacilli strain - 19705 19721 1.48e-05 0.138 AGTAAGATTTGTTGACA
NagC_Gammaproteobacteria strain + 5797 5819 1.49e-05 0.0538 TTAAATTTAAAAAATAAAAATTA
TnrA_Bacilli strain + 5588 5604 1.49e-05 0.138 TGTTATAATGCATGACC
XylR_Gammaproteobacteria strain + 9613 9650 1.49e-05 0.0472 GCAGCATATGATAATAGATGAAATAAAACGTACAAATC
ABC1168_Bacillus_Burkholderia_Rhodobacteriales strain + 6547 6566 1.5e-05 0.28 CTTTGCAAACAAATGCGGTA
MalR_Lactobacillales strain + 6896 6915 1.52e-05 0.573 ATGCAATACCGTTTGCAAAA
RL4253_Rhodobacterales_Rhizobiales strain - 18242 18261 1.52e-05 0.109 GTTTTATAAACTTTTAAAAC
XylR_Gammaproteobacteria strain + 17026 17063 1.54e-05 0.0472 ATAAAATCTATTGTTATCGATGTTGAAAAGGATAATTT
YcjW_Listeriaceae_Enterobacteria strain - 6293 6312 1.54e-05 0.646 CAATGACACCTCTTCCAAAA
SMb21706_Rhizobiales strain + 14465 14484 1.54e-05 0.179 TTGATAAAACTTTATCAGAA
XCC2209_Xanthomonadaceae strain - 14231 14250 1.57e-05 0.256 CAATGTAATGTTTTACTTAA
LacI_Enterobacteriales strain - 8202 8222 1.58e-05 0.636 AACTGCGGGCAAATAGCAAAC
RbsR_Bacillales_Lactobacillales strain - 1616 1635 1.58e-05 0.203 GTGTGTAACCCTTTCAATAT
MalR_Clostridiales_Thermoanaerobacteriales strain - 5270 5289 1.61e-05 0.271 TAAAACGAGCATTTTCATAT
mlr8213_Mesorhizobium_Streptomyces strain - 16556 16575 1.61e-05 0.661 AATCGATATTGCAAGCCCTT
SMb20537_Rhizobiales strain + 16140 16159 1.64e-05 0.25 ACCAAGAAAAATTGGAACAG
Atu4556_Rhizobiales strain - 3590 3609 1.64e-05 0.178 CAATAAAAATAATATCAGGA
XylR_Gammaproteobacteria strain + 1371 1408 1.66e-05 0.0472 AAGATATTTCAGAAAAATTAGGTGGATTTGAACAATTG
NadR_Enterobacteriales strain + 704 721 1.67e-05 0.176 TTTGTTGCATATTTAACA
Reut_C5892_Burkholderiales strain - 7244 7263 1.67e-05 0.2 AAATGGATAAATAATCATAT
PdhR_Gammaproteobacteria strain + 19176 19196 1.67e-05 0.164 TCGATGGGTATGACAAATGAT
RbsR_Clostridia strain + 14671 14690 1.68e-05 0.386 ATTATTAGCCGAATCAGTTA
FruR_Alpha_Beta_Xanthomonadales strain + 11040 11059 1.71e-05 0.188 AAGTGAGAACCTTAGCAGAT
BH1250_Bacillaceae_Lactobacillaceae strain - 781 800 1.72e-05 0.249 ATGTGGATAACTTTCCATAG
SMb20717_Alphaproteobacteria strain - 8100 8119 1.72e-05 0.216 AGATGAAAAGCTTTTCTTTG
Reut_C5892_Burkholderiales strain + 18057 18076 1.72e-05 0.2 AAATCACTACAGAACCAATT
ECA2487_Gammaproteobacteria strain - 17208 17227 1.73e-05 0.398 ATTGCAAAACACTTGCCTTT
Rfer_1112_Burkholderiales strain + 781 800 1.74e-05 0.227 CTATGGAAAGTTATCCACAT
SMb20667_Rhizobiales strain + 7857 7876 1.75e-05 0.255 AGTTGGAAGCAAAGGCAAAA
VP2396_Vibrio_Yersinia strain + 5779 5798 1.79e-05 0.0641 AAAATATTAAAAAGAGATTT
VP2396_Vibrio_Yersinia strain - 17286 17305 1.79e-05 0.0641 AATATTTTACATAGAAAACT
NagC_Gammaproteobacteria strain - 6717 6739 1.8e-05 0.0543 CTTCTTTTTCAGTGCGAATTTTT
Reut_C5892_Burkholderiales strain + 7244 7263 1.8e-05 0.2 ATATGATTATTTATCCATTT
GalRS_Gammaproteobacteria strain - 13856 13875 1.81e-05 0.326 TATTGGAATTGCTTCCAGAG
PdhR_Gammaproteobacteria strain + 19952 19972 1.81e-05 0.164 GTATCTGATAAAACCAATTAT
LMO0535_Enterococcaceae_Listeriaceae strain - 4218 4237 1.81e-05 0.32 GAATGCTCTGCATTACACAG
MalR_Clostridium_perfringens strain - 576 595 1.81e-05 0.162 ATATGGTCTTGTTACGGAAG
GntR_Rhodobacterales strain - 9138 9157 1.82e-05 0.382 ACCTGTTATGGCAATCTTAC
SMb20667_Rhizobiales strain + 16997 17016 1.83e-05 0.255 AAATTGCATCACTGGTAAAA
LldR_Enterobacteriales strain - 1241 1261 1.84e-05 0.358 AGCAATGGCATTATCAATATT
IscR_Rickettsiales strain + 17667 17685 1.84e-05 0.166 ATGATATAAATAAAAAAAT
VP2396_Vibrio_Yersinia strain + 17298 17317 1.85e-05 0.0641 AAAATATTAATTTATGCTTA
RL4253_Rhodobacterales_Rhizobiales strain - 1898 1917 1.87e-05 0.109 AATTTTTTATTTTTTAAACC
NagC_Gammaproteobacteria strain - 20431 20453 1.88e-05 0.0543 TAAATTTTGCTTTGAAAATATTC
YPO0846_Enterobacteriales strain + 19585 19604 1.9e-05 0.206 AGATAAAAAAAATCTCAAAT
ABC0302_Bacilliales strain - 4103 4122 1.9e-05 0.152 ATTTAATAAGGTCGTCAATA
STM1555_Enterobacteriales_Vibrionales strain - 16641 16660 1.93e-05 0.742 TCATTGAACCGCTGGCATCA
LMO1727_Enterococcaceae_Listeriaceae strain - 19251 19270 1.95e-05 0.247 TTATATAATCTTTTCCCAAA
IscR_Beta_Gamma strain - 20781 20805 1.96e-05 0.156 ATAATTAACAAAATTCGTCAACAAT
VCA0673_Vibrionales strain - 18057 18076 1.96e-05 0.223 AATTGGTTCTGTAGTGATTT
TnrA_Bacilli strain + 1791 1807 1.97e-05 0.138 TGATAGATTATTTGTCC
XylR_Gammaproteobacteria strain - 3263 3300 1.98e-05 0.0512 TATAAAAGTCTTCATCAAAAATTGAAGTTCCATAACTT
XCC3356_Alpha_Gamma strain + 6547 6566 1.98e-05 0.491 CTTTGCAAACAAATGCGGTA
RL4253_Rhodobacterales_Rhizobiales strain - 4665 4684 1.99e-05 0.109 TGTTTAAGGCGTTATAATTC
IscR_Rhodospirillaceae_Rhodobacterales strain - 11738 11756 1.99e-05 0.34 CTGCACCGAGATTCTCGGA
SCO0806_Actinomycetales strain + 19021 19040 2e-05 0.419 TGCTTGAAAGGTTTAAAAAT
FruR_Alpha_Beta_Xanthomonadales strain + 13787 13806 2.01e-05 0.188 TACTGGAAACGGTACAGGAA
FruR_Alpha_Beta_Xanthomonadales strain + 13826 13845 2.01e-05 0.188 TACTGGAAACGGTACAGGAA
MalR_Pediococcus_Leuconostoc strain + 12504 12523 2.01e-05 0.812 CATGGAAAACATTTGCCCAA
TnrA_Bacilli strain + 1277 1293 2.03e-05 0.138 GGTAAGGTTTTATATCC
TnrA_Bacilli strain + 3768 3784 2.03e-05 0.138 GGTAAGGTTTTATATCC
Atu4556_Rhizobiales strain + 8100 8119 2.09e-05 0.178 CAAAGAAAAGCTTTTCATCT
IscR_Rhodospirillaceae_Rhodobacterales strain - 10851 10869 2.1e-05 0.34 CTTGACTGAAGTTCTTTGA
NrdR_Firmicutes strain + 3911 3926 2.1e-05 0.339 ATAAAATATCTAATAT
XylR_Bacillus_Clostridium_group strain - 12153 12175 2.12e-05 0.136 GATATTTTGTTTATTATTCAAAC
PsrA_Proteobacteria strain + 5272 5291 2.12e-05 0.368 ATGAAAATGCTCGTTTTACG
PsrA_Proteobacteria strain + 2211 2230 2.14e-05 0.368 TTGAAAAAGCAGGTTTAAAA
MsmR_Lactobacillales strain + 20499 20518 2.16e-05 0.121 AAAATGAATTTTTTGAAGAA
SMb21706_Rhizobiales strain + 19252 19271 2.19e-05 0.179 TTGGGAAAAGATTATATAAG
CtsR_Firmicutes strain - 12305 12321 2.19e-05 0.269 GGTTTATAAAGGTCAAG
NarP_Gammaproteobacteria strain - 4089 4104 2.2e-05 0.566 TACCTCCTTTAAGGTG
LMO1727_Enterococcaceae_Listeriaceae strain + 549 568 2.2e-05 0.247 GTATAGAAAATTTTGAGAAA
RbsR_Streptomycetaceae_Rubrobacteraceae strain + 3965 3984 2.2e-05 0.424 CGATGGAAAACATTCCAAGC
RbsR_Clostridia strain + 19857 19876 2.21e-05 0.386 ATACTTGAACCTTTCAGGAA
ScrR_Gammaproteobacteria strain - 3628 3647 2.21e-05 0.328 TTGATAATCCTGTTTAACTA
SssR_Proteobacteria strain + 14089 14104 2.22e-05 0.82 ATGAAGTTAGCGTAGA
SMb20717_Alphaproteobacteria strain + 8100 8119 2.22e-05 0.216 CAAAGAAAAGCTTTTCATCT
ECA2487_Gammaproteobacteria strain + 12180 12199 2.23e-05 0.398 AATGGCAAACACCTACTATT
VP2396_Vibrio_Yersinia strain - 17402 17421 2.23e-05 0.0641 AATATAACAGCTATTATTAA
FruR_Alpha_Beta_Xanthomonadales strain - 13856 13875 2.24e-05 0.188 TATTGGAATTGCTTCCAGAG
CtsR_Firmicutes strain + 20468 20484 2.25e-05 0.269 GGTCAATTAGAATCAGT
PtxS_Burkholderiales_Pseudomonadales strain - 2633 2652 2.27e-05 0.222 ACCTGAAAACAGTTTTAAAG
CcpA_Bacilli strain - 9960 9975 2.28e-05 0.179 TTAGAAGCTCTATCAA
FruR_Alpha_Beta_Xanthomonadales strain + 6917 6936 2.28e-05 0.188 GAGTAAAATCGGTTACGGCG
CcpA_Bacilli strain + 5766 5781 2.29e-05 0.179 TTATAAGCGATATAAA
XylR_Gammaproteobacteria strain + 16569 16606 2.34e-05 0.0524 ATCGATTAAGGACAAGGATATAAGAGAAAAAGTAAGGG
Rfer_1112_Burkholderiales strain + 13856 13875 2.35e-05 0.23 CTCTGGAAGCAATTCCAATA
MsmR_Lactobacillales strain + 20426 20445 2.36e-05 0.121 AAATTGAATATTTTCAAAGC
VP2396_Vibrio_Yersinia strain + 2171 2190 2.36e-05 0.0641 AAAATATCATCTCAGAATTT
BH1250_Bacillaceae_Lactobacillaceae strain - 5051 5070 2.37e-05 0.249 ATGTGGGTACGCTTATATAT
AglR_Rhizobiales strain - 20140 20159 2.38e-05 0.287 CTTCTGAAACCTTATCTAAA
XylR_Gammaproteobacteria strain + 6694 6731 2.39e-05 0.0524 AATTCTTCATTTAATATGAGGAAAAAAATTCGCACTGA
MalR_Streptococcus_pneumoniae strain - 15882 15901 2.4e-05 0.243 ATTTACAATCTTTTGCCTTA
NagC_Gammaproteobacteria strain + 18029 18051 2.41e-05 0.0635 TATAATTTGACTTCTGAAATGTT
IscR_Rhodospirillaceae_Rhodobacterales strain - 8734 8752 2.43e-05 0.34 CTTGACGGGTTTAAGCTGA
NtdR_Bacillales strain + 1413 1432 2.45e-05 0.426 TTAAATAATTGATTCCAAGA
CscR_Gammaproteobacteria strain - 3506 3525 2.48e-05 0.244 CATTTTTAGCATTTACAATT
VP2396_Vibrio_Yersinia strain - 1433 1452 2.48e-05 0.0641 AAAATAATAACACATAATAT
YPO2568_Gammaproteobacteria strain + 1353 1372 2.49e-05 0.35 TAAAGAAACCGCTATATAAA
MalR_Streptococcus_pneumoniae strain - 12504 12523 2.49e-05 0.243 TTGGGCAAATGTTTTCCATG
ModE_Gammaproteobacteria strain - 2493 2518 2.49e-05 0.15 TATTTATTAAATTATATTTTTAACTT
LacI_Yersinia strain - 7705 7725 2.51e-05 0.243 GCTTCTTTTACCTTCTCACCA
ECA3649_Erwinia strain + 13044 13063 2.51e-05 0.159 ATTTGTGCTAAACCATTAGT
RbsR_Bacilli strain + 14465 14484 2.52e-05 0.263 TTGATAAAACTTTATCAGAA
BB0548_Burkholderiales strain + 20575 20594 2.52e-05 0.471 ATAGAAAAACATCCTCAGAT
SMb21706_Rhizobiales strain + 16316 16335 2.54e-05 0.179 GAGAAAATAGCGGTTCTCAG
PtxS_Burkholderiales_Pseudomonadales strain - 13856 13875 2.54e-05 0.222 TATTGGAATTGCTTCCAGAG
STM3633_Alpha_Gamma strain - 3374 3393 2.54e-05 0.735 CATTTAAATCCTTCTGACAA
bll3974_Rhizobiales strain - 9133 9152 2.55e-05 0.23 TTATGGCAATCTTACCCTCA
lmo0734_Listeria_Symbiobacterium strain + 802 821 2.55e-05 0.413 TGATAAAAATGTTTACACAT
SMb20537_Rhizobiales strain - 17739 17758 2.57e-05 0.25 TTTAATTAAATTTTCAAGAT
TnrA_Bacilli strain + 5615 5631 2.6e-05 0.147 ATTAAGGTTTTCTAACA
XCC2209_Xanthomonadaceae strain - 2336 2355 2.6e-05 0.256 AGATGCAATACTTTACTTAT
RbsR_Actinomycetales strain - 11592 11611 2.62e-05 0.869 AGCAGGAAACAATGTCATTA
ScrR_Firmicutes_Burkholderiales strain + 3530 3549 2.62e-05 0.261 AGATGAAACTGGTAAAAATG
SMb21272_Rhizobiales strain - 3070 3089 2.63e-05 0.465 CGTATTATACGTTAAACCAT
XCC2209_Xanthomonadaceae strain + 5033 5052 2.63e-05 0.256 AGATGGAATAGAATTCAGAT
ScrR_Firmicutes_Burkholderiales strain - 6442 6461 2.66e-05 0.261 TTTTAAGTCCGATTCCGTTT
bll3974_Rhizobiales strain - 9997 10016 2.67e-05 0.23 CATTGACCTCTATACCCTCA
XCC3356_Alpha_Gamma strain + 15882 15901 2.67e-05 0.491 TAAGGCAAAAGATTGTAAAT
CcpA_Bacilli strain + 6295 6310 2.68e-05 0.179 TTGGAAGAGGTGTCAT
ECA3649_Erwinia strain - 1756 1775 2.68e-05 0.159 AATTTTGCAACACAAAATGC
RKP05499_Bacteria strain - 2461 2480 2.7e-05 0.219 TACTTAAATTCATTACATTA
SMA1711_Rhodobacterales_Rhizobiales strain - 8085 8104 2.71e-05 0.91 CTTTGCTTCCGGATGATAGA
RbsR_Bacillales_Lactobacillales strain - 802 821 2.71e-05 0.212 ATGTGTAAACATTTTTATCA
LMO1727_Enterococcaceae_Listeriaceae strain + 20090 20109 2.72e-05 0.247 GAATTTAAACGTTCCTTCAG
NadR_Enterobacteriales strain - 6421 6438 2.73e-05 0.176 CGTTTACCTTATTTAATA
NagC_Gammaproteobacteria strain + 20876 20898 2.73e-05 0.0659 TTTATTTTTTTTAAAAAATAGGA
IscR_Beta_Gamma strain - 18821 18845 2.75e-05 0.174 ATATTTAACCTTATTCGTCTGTAAA
ABC0302_Bacilliales strain - 18100 18119 2.79e-05 0.178 TTTTAACAAGCATGTTATTT
GntR_Alphaproteobacteria_Alteromonadales strain - 14152 14171 2.79e-05 1 CATTGATAGAGCAAATAAAT
ECA3649_Erwinia strain + 12948 12967 2.81e-05 0.159 CTTAAAGGTATACCAAAAAG
YvdE_Bacilli strain + 14794 14813 2.81e-05 0.35 TGATGAAATAGCTAACTTAT
YPO2568_Gammaproteobacteria strain - 11434 11453 2.82e-05 0.35 TATCGATAGCGCCACCTTGA
NagQ_a_b_g_Proteobacteria strain - 18056 18073 2.82e-05 0.287 TGGTTCTGTAGTGATTTT
PtxS_Burkholderiales_Pseudomonadales strain - 18709 18728 2.83e-05 0.222 AAATGAAACTGCTTCTTTTA
SMb20537_Rhizobiales strain + 6968 6987 2.84e-05 0.25 TCAAGGAAAATATGGAAAAG
CcpA_Bacilli strain - 4667 4682 2.84e-05 0.179 TTTAAGGCGTTATAAT
BH1250_Bacillaceae_Lactobacillaceae strain - 13856 13875 2.84e-05 0.249 TATTGGAATTGCTTCCAGAG
RSc1790_Burkholderiales_Pseudomonadales strain - 6917 6936 2.84e-05 0.763 CGCCGTAACCGATTTTACTC
Fnr_Gammaproteobacteria strain - 12306 12319 2.87e-05 0.392 TTTATAAAGGTCAA
ECA3649_Erwinia strain - 5826 5845 2.88e-05 0.159 AATTTTGGCATTTTTATAAC
MalI_Enterobacteriales strain - 2084 2103 2.89e-05 0.338 AAAGTATCACGTTTAATCCA
XylR_Gammaproteobacteria strain + 1899 1936 2.93e-05 0.0554 GTTTAAAAAATAAAAAATTATAGGAGGTTTTGTAAATG
bll3974_Rhizobiales strain - 8902 8921 2.93e-05 0.23 CAATTAATTCTTTACCATCA
ScrR_Gammaproteobacteria strain - 5623 5642 2.93e-05 0.328 AAGCAGAAATTTGTTAGAAA
RbsR_Bacilli strain + 18783 18802 2.94e-05 0.263 TATTTAAAAGATTTGACTAA
IscR_Rickettsiales strain - 17284 17302 2.94e-05 0.166 ATTTTACATAGAAAACTCT
AglR_Rhizobiales strain - 19857 19876 2.95e-05 0.287 TTCCTGAAAGGTTCAAGTAT
XylR_Rhodobacteriales_Rhizobiales strain + 17985 18007 2.96e-05 0.334 TTTACTTTGATAAATATGAAAAT
YvdE_Bacilli strain + 1926 1945 2.96e-05 0.35 TTTTGTAAATGGTAATAGAG
ModE_Gammaproteobacteria strain + 2499 2524 2.96e-05 0.15 AAAATATAATTTAATAAATATATCGC
MalR_Clostridiales_Thermoanaerobacteriales strain + 6896 6915 2.97e-05 0.281 ATGCAATACCGTTTGCAAAA
RbsR_Streptomycetaceae_Rubrobacteraceae strain - 3843 3862 2.97e-05 0.424 TCATATAAAGGTTTCCCATA
Atu4556_Rhizobiales strain + 17568 17587 2.98e-05 0.203 TAAAGAAAATGGTTTTAAGC
RbsR_Bacilli strain + 3844 3863 2.98e-05 0.263 ATGGGAAACCTTTATATGAA
YE3589_Yersinia_Streptomyces strain + 8066 8085 2.99e-05 1 ATATATCCGTGGGAAGGAAT
bll3974_Rhizobiales strain + 16005 16024 3.01e-05 0.23 TAATGATGAAGACAGCATCA
NagQ_a_b_g_Proteobacteria strain - 12956 12973 3.02e-05 0.287 TCGCCTCTTTTTGGTATA
XCC2209_Xanthomonadaceae strain + 6626 6645 3.02e-05 0.256 CAATGGAATCGCTTAATAAA
FruR_Vibrionales_Pseudomonadales strain + 17045 17064 3.02e-05 0.663 ATGTTGAAAAGGATAATTTT
STM3696_Enterobacteriales_Burkholderiales strain + 15013 15032 3.04e-05 0.599 AAATGAAAGAGGTAACAAAT
XylR_Gammaproteobacteria strain + 20394 20431 3.04e-05 0.0554 AGATAAGGACGGAATTAGAAAATTTAAAAAAGAAATTG
RbsR_Bacilli strain + 3628 3647 3.05e-05 0.263 TAGTTAAACAGGATTATCAA
RegR_Streptococcus strain - 18335 18354 3.05e-05 0.496 TTTAAAATTAAATTTACTTT
SMb21706_Rhizobiales strain + 8168 8187 3.06e-05 0.179 AAGGATAAAGCATTTAGCGA
MalR_Staphylococcus strain - 802 821 3.08e-05 0.47 ATGTGTAAACATTTTTATCA
lmo0734_Listeria_Symbiobacterium strain + 12577 12596 3.08e-05 0.413 TGATATGAAGGATTACCCAC
IscR_Rickettsiales strain - 1980 1998 3.09e-05 0.166 ATTGTAGAAATTAATACAA
SMb20717_Alphaproteobacteria strain + 2773 2792 3.11e-05 0.216 ATATGAAAAACATATCATCA
XylR_Gammaproteobacteria strain + 250 287 3.11e-05 0.0554 AGGGAAAACTAGAAAAAGAAAATTAAAGATTATAGAGG
MsmR_Lactobacillales strain + 5330 5349 3.13e-05 0.121 CAAATGGGATGTTACAAAGA
MarA_Enterobacteriales strain - 10923 10942 3.14e-05 0.701 ATAGCAGCAACAACCAAAAA
NagC_Gammaproteobacteria strain - 15122 15144 3.15e-05 0.0702 CTCATTTTTCTATTATAAATATT
ModE_Gammaproteobacteria strain - 17182 17207 3.2e-05 0.15 TATATCTATACGTTTATATATAATAT
XylR_Rhodobacteriales_Rhizobiales strain - 17627 17649 3.2e-05 0.334 TTTTTATCCAAGTTTGAAGATAT
RegR_Streptococcus strain + 19729 19748 3.2e-05 0.496 TAACTACACTAAATTACTTT
RPU04121_Methylophilales_Pseudomonadales strain - 10882 10901 3.24e-05 0.489 CCTTGTTGTAGGTTACATCA
YPO2568_Gammaproteobacteria strain + 8986 9005 3.26e-05 0.35 CAAAGGTGGCGTTATAAAAT
SMb20717_Alphaproteobacteria strain + 802 821 3.26e-05 0.216 TGATAAAAATGTTTACACAT
XCC2209_Xanthomonadaceae strain - 802 821 3.27e-05 0.256 ATGTGTAAACATTTTTATCA
ScrR_Firmicutes_Burkholderiales strain - 20472 20491 3.29e-05 0.261 TGAAAGGACTGATTCTAATT
RbsR_Bacillales_Lactobacillales strain + 17187 17206 3.31e-05 0.212 ATATATAAACGTATAGATAT
RbsR_Bacillales_Lactobacillales strain - 17187 17206 3.31e-05 0.212 ATATCTATACGTTTATATAT
CscR_Gammaproteobacteria strain - 18193 18212 3.31e-05 0.244 CTATGTTAACTTTTATTTTT
MalR_Clostridium_perfringens strain + 17034 17053 3.33e-05 0.238 TATTGTTATCGATGTTGAAA
MalR_Bacillaceae strain + 7867 7886 3.36e-05 0.34 AAAGGCAAAAGATTTAAATA
ArcA_Gammaproteobacteria strain + 2733 2747 3.37e-05 0.242 TATCAATATATTATC
AglR_Rhizobiales strain - 13787 13806 3.39e-05 0.287 TTCCTGTACCGTTTCCAGTA
AglR_Rhizobiales strain - 13826 13845 3.39e-05 0.287 TTCCTGTACCGTTTCCAGTA
Fnr_Gammaproteobacteria strain - 17667 17680 3.4e-05 0.392 TTTATTTATATCAT
RbsR_Streptomycetaceae_Rubrobacteraceae strain - 14231 14250 3.4e-05 0.424 CAATGTAATGTTTTACTTAA
NagQ_a_b_g_Proteobacteria strain - 5874 5891 3.41e-05 0.287 TGTTACTAATGTGCTTTT
SMA2527_Enterobacteriales_Oceanospirillales strain + 18848 18867 3.46e-05 0.448 TATTGATAAGGTCAAAATGA
RKP05499_Bacteria strain + 14794 14813 3.46e-05 0.219 TGATGAAATAGCTAACTTAT
VP2396_Vibrio_Yersinia strain + 3910 3929 3.47e-05 0.082 AATAAAATATCTAATATGAA
SMb21706_Rhizobiales strain - 12504 12523 3.48e-05 0.179 TTGGGCAAATGTTTTCCATG
Rfer_1112_Burkholderiales strain + 1616 1635 3.49e-05 0.273 ATATTGAAAGGGTTACACAC
NrdR_Proteobacteria strain - 1233 1248 3.5e-05 1 TCAATATTTGTAGTAT
RbsR_Clostridia strain + 20020 20039 3.5e-05 0.409 ATACTTAAATAATTTACAAA
NadR_Enterobacteriales strain - 11259 11276 3.51e-05 0.176 TGTTTTCTTTGAAAAACT
RL4253_Rhodobacterales_Rhizobiales strain + 15214 15233 3.52e-05 0.15 AATATTAAACGTTGTTAATA
MalR_Bacillaceae strain + 15882 15901 3.54e-05 0.34 TAAGGCAAAAGATTGTAAAT
MtaR_Streptococcaceae strain + 7957 7973 3.55e-05 0.582 CAAATGTTATAGCTATA
TnrA_Bacilli strain + 7204 7220 3.55e-05 0.167 TGGAAAATTATATTTCA
PtxS_Burkholderiales_Pseudomonadales strain + 1039 1058 3.6e-05 0.234 AGATGAAACAGGTAAAATCG
MsmR_Lactobacillales strain + 18232 18251 3.6e-05 0.121 AAGAGGAGATGTTTTAAAAG
LldR_Enterobacteriales strain - 8491 8511 3.6e-05 0.415 AATACAGGTACTCCTAATTCT
XylR_Gammaproteobacteria strain + 19378 19415 3.61e-05 0.0559 ATAAAAAAACTAAAATAGTGAATATACATACACAACCA
XylR_Gammaproteobacteria strain + 20797 20834 3.61e-05 0.0559 GTTAATTATTGTATAATTATAAGAAAACATCATAAATT
SPy1297_Streptococcus strain + 8916 8935 3.62e-05 0.277 TAATTGAAACGATTATGGAT
SPy1297_Streptococcus strain - 19857 19876 3.62e-05 0.277 TTCCTGAAAGGTTCAAGTAT
MalR_Bacillaceae strain - 6896 6915 3.63e-05 0.34 TTTTGCAAACGGTATTGCAT
STM3696_Enterobacteriales_Burkholderiales strain + 2580 2599 3.63e-05 0.599 AAATGATGATTCTAAAATAA
McbR_Corynebacterium strain - 12782 12797 3.63e-05 1 CAAATAGCTTTGTATT
SMb20717_Alphaproteobacteria strain - 6917 6936 3.64e-05 0.216 CGCCGTAACCGATTTTACTC
SMc04401_Alpha_Gamma strain - 9875 9894 3.64e-05 0.632 AGTTCAGAAAGCTCTAATTT
Atu4556_Rhizobiales strain + 12504 12523 3.64e-05 0.204 CATGGAAAACATTTGCCCAA
AraC_Enterobacteriales strain - 9905 9942 3.66e-05 0.312 CCATAGGATTTTCCGTATTGTTGGCAAATCCTGCTTTG
YcjW_Listeriaceae_Enterobacteria strain + 9402 9421 3.67e-05 0.77 CCATTGGAACTATTCCACAT
ECA2487_Gammaproteobacteria strain + 12504 12523 3.68e-05 0.398 CATGGAAAACATTTGCCCAA
RL4253_Rhodobacterales_Rhizobiales strain - 17973 17992 3.68e-05 0.15 AAAGTAAAAACTTACCATTC
YPO0846_Enterobacteriales strain + 16276 16295 3.69e-05 0.27 TGATAAAAAAAAACTGATGA
FruR_Gammaproteobacteria strain + 8918 8933 3.69e-05 0.609 ATTGAAACGATTATGG
SMA2527_Enterobacteriales_Oceanospirillales strain + 19124 19143 3.72e-05 0.448 ATTTGACAACCTCAAAAATG
XylR_Gammaproteobacteria strain + 15125 15162 3.73e-05 0.0559 ATTTATAATAGAAAAATGAGGAGGAATTTATATAATAT
XylR_Bacillus_Clostridium_group strain + 12145 12167 3.76e-05 0.146 CTATATTGGTTTGAATAATAAAC
VP2396_Vibrio_Yersinia strain - 2499 2518 3.78e-05 0.0826 TATTTATTAAATTATATTTT
SMb20667_Rhizobiales strain + 9958 9977 3.79e-05 0.397 TATTGATAGAGCTTCTAAAG
MsmR_Lactobacillales strain + 8454 8473 3.8e-05 0.121 AAAAAGAAACGGCTTGTAAA
MalR_Clostridiales_Thermoanaerobacteriales strain - 802 821 3.8e-05 0.281 ATGTGTAAACATTTTTATCA
RKP05499_Bacteria strain + 3350 3369 3.82e-05 0.219 GAAAGTAGTAGATTATATAA
Atu5393_Rhizobiales strain - 13787 13806 3.83e-05 0.762 TTCCTGTACCGTTTCCAGTA
Atu5393_Rhizobiales strain - 13826 13845 3.83e-05 0.762 TTCCTGTACCGTTTCCAGTA
XylR_Bacillus_Clostridium_group strain - 5488 5510 3.87e-05 0.146 GCTTGTCGGTTCGTCCAACAAAA
PckR_Rhizobiales strain - 11094 11113 3.87e-05 0.238 CCCTTCTATCCATTTAGGAT
MalI_Enterobacteriales strain + 3649 3668 3.87e-05 0.338 AAGACCCGAAGTTTTATCAA
RBPS06636_Burkholderia strain - 9145 9164 3.88e-05 0.412 ATTTTACACCTGTTATGGCA
RSc1790_Burkholderiales_Pseudomonadales strain + 1195 1214 3.88e-05 0.763 AAACGAAAAAGTTTATAGTC
ModE_Gammaproteobacteria strain + 2712 2737 3.88e-05 0.15 CTATTATATTTTAAAAGATAGTATCA
SCO2753_Actinomycetales strain + 1353 1372 3.89e-05 0.955 TAAAGAAACCGCTATATAAA
BB0548_Burkholderiales strain + 8100 8119 3.93e-05 0.49 CAAAGAAAAGCTTTTCATCT
TnrA_Bacilli strain - 5674 5690 3.94e-05 0.167 TGTCATGATTTCCATCC
XylR_Bacillus_Clostridium_group strain - 19702 19724 3.96e-05 0.146 AGTAGTAAGATTTGTTGACAAAT
ECA3649_Erwinia strain + 3732 3751 3.96e-05 0.184 AATATTGATACAGCAATTGC
MsmR_Lactobacillales strain + 5204 5223 3.99e-05 0.121 AAAAAGAGATATTGCAAAAT
MsmR_Lactobacillales strain + 7043 7062 3.99e-05 0.121 AAAAAGAAGGGCTTGAAAAT
MsmR_Lactobacillales strain + 17159 17178 3.99e-05 0.121 TAAAAGAATCATTGTAAAAA
NadR_Enterobacteriales strain + 18048 18065 4e-05 0.176 TGTTGAGTAAAATCACTA
STM1555_Enterobacteriales_Vibrionales strain + 16641 16660 4.01e-05 0.771 TGATGCCAGCGGTTCAATGA
NagC_Gammaproteobacteria strain + 14510 14532 4.03e-05 0.0734 ATTGCTTTAAAGAAAAAATTAAT
MalI_Enterobacteriales strain - 19956 19975 4.05e-05 0.338 ACAATAATTGGTTTTATCAG
ArcA_Gammaproteobacteria strain - 19999 20013 4.07e-05 0.242 TTTTAATAAGTTAAC
RL4253_Rhodobacterales_Rhizobiales strain - 1780 1799 4.1e-05 0.15 AATCTATCACCTTTCACTTC
NadR_Enterobacteriales strain + 17983 18000 4.1e-05 0.176 TTTTTACTTTGATAAATA
BH1250_Bacillaceae_Lactobacillaceae strain + 8440 8459 4.14e-05 0.291 AAATGAATTCGATAAAAAAG
GalR_Gammaproteobacteria strain - 6919 6934 4.16e-05 0.653 CCGTAACCGATTTTAC
MalR_Staphylococcus strain + 9230 9249 4.19e-05 0.47 GTTTGCAAAATACTGCATGA
Atu4556_Rhizobiales strain - 8100 8119 4.19e-05 0.204 AGATGAAAAGCTTTTCTTTG
NagC_Gammaproteobacteria strain - 20433 20455 4.21e-05 0.0734 TTTAAATTTTGCTTTGAAAATAT
BH3692_Bacilli_Clostridia strain - 13485 13504 4.21e-05 1 TTACCAATAGGTTTTAGGGT
MalI_Enterobacteriales strain + 8101 8120 4.24e-05 0.338 AAAGAAAAGCTTTTCATCTA
MsmR_Lactobacillales strain + 15214 15233 4.25e-05 0.121 AATATTAAACGTTGTTAATA
CscR_Gammaproteobacteria strain + 2446 2465 4.26e-05 0.244 TCCAGTTAATGTTAGTAATG
NagC_Gammaproteobacteria strain - 18721 18743 4.26e-05 0.0734 TATATCTTTCAAACCAAATGAAA
IscR_Rickettsiales strain + 8636 8654 4.27e-05 0.166 ATTGGAGGCATAAAAAGAG
IscR_Rickettsiales strain - 3707 3725 4.27e-05 0.166 ATTGTATACATACGGCAAC
LldR_Enterobacteriales strain + 5396 5416 4.27e-05 0.415 GCAATTTGCACTGCGATATTT
ScrR_Gammaproteobacteria strain + 12199 12218 4.29e-05 0.328 TGAAAAAATCATGTCAGTAA
KdgR_Bacillaceae strain - 13564 13583 4.3e-05 0.525 TGCCAAAAATGATTTAACAC
Atu3062_Alphaproteobacteria_Pseudomonas strain + 10313 10332 4.32e-05 1 ATAGAAAAGCACCTTAATGA
STM3633_Alpha_Gamma strain - 19012 19031 4.34e-05 0.735 CCTTTCAAGCATTTTAATAA
VP2396_Vibrio_Yersinia strain + 7403 7422 4.34e-05 0.0879 AAGACATTATCTATAATTAT
NagQ_a_b_g_Proteobacteria strain + 5975 5992 4.35e-05 0.287 TGGTATTGAACCGCCATC
DeoR_Enterobacteriales strain - 2828 2843 4.35e-05 0.254 TGTAGTAATGATAACA
TreR_Gammaproteobacteria strain + 20174 20193 4.38e-05 1 TATAAGGAAAATTCCGATTT
GalR_Gammaproteobacteria strain - 1618 1633 4.4e-05 0.653 GTGTAACCCTTTCAAT
NadR_Enterobacteriales strain + 7029 7046 4.46e-05 0.176 GGATGTGGATATTAAAAA
MsmR_Lactobacillales strain + 6626 6645 4.46e-05 0.121 CAATGGAATCGCTTAATAAA
ScrR_Firmicutes_Burkholderiales strain + 18709 18728 4.47e-05 0.261 TAAAAGAAGCAGTTTCATTT
PckR_Rhizobiales strain + 8916 8935 4.47e-05 0.238 TAATTGAAACGATTATGGAT
ABC0302_Bacilliales strain + 12760 12779 4.48e-05 0.239 AAATAAGAAGATTTATATTA
SMb20537_Rhizobiales strain + 6885 6904 4.49e-05 0.295 TCCAGGAACATATGCAATAC
CtsR_Firmicutes strain - 18794 18810 4.49e-05 0.33 AATGGAAATTAGTCAAA
AglR_Rhizobiales strain - 8916 8935 4.51e-05 0.287 ATCCATAATCGTTTCAATTA
LacI_Yersinia strain - 12794 12814 4.52e-05 0.243 ATATGTTTTGCAGCCACCAAA
XylR_Rhizobiales strain + 19120 19139 4.54e-05 0.464 AATTATTTGACAACCTCAAA
RKP05499_Bacteria strain + 14231 14250 4.55e-05 0.219 TTAAGTAAAACATTACATTG
SCO0806_Actinomycetales strain + 8916 8935 4.55e-05 0.487 TAATTGAAACGATTATGGAT
MalR_Bacillaceae strain - 802 821 4.55e-05 0.342 ATGTGTAAACATTTTTATCA
SPOA0242_Alpha_Burkholderiales strain - 6476 6495 4.56e-05 0.987 CCTTGATTTCGATACCTTTT
RPU04121_Methylophilales_Pseudomonadales strain - 3530 3549 4.6e-05 0.489 CATTTTTACCAGTTTCATCT
RPU04121_Methylophilales_Pseudomonadales strain - 14090 14109 4.6e-05 0.489 GATTTTCTACGCTAACTTCA
NagC_Gammaproteobacteria strain - 14979 15001 4.62e-05 0.0734 TTTAATTCACTTGGCAAAATCTT
Fnr_Gammaproteobacteria strain - 7581 7594 4.62e-05 0.392 TTGTGCTATATCAT
VCA0673_Vibrionales strain - 12777 12796 4.62e-05 0.394 AAATAGCTTTGTATTAATAA
XylR_Gammaproteobacteria strain + 17641 17678 4.63e-05 0.0588 GGATAAAAATAAATTAAAAGAATTAGATGATATAAATA
MalR_Clostridiales_Thermoanaerobacteriales strain - 1616 1635 4.63e-05 0.281 GTGTGTAACCCTTTCAATAT
NrdR_Firmicutes strain - 6733 6748 4.66e-05 0.354 ATTCAATATCTTCTTT
NrdR_Firmicutes strain + 18434 18449 4.66e-05 0.354 ATAAAATATCCTGTTT
LacI_Yersinia strain - 6410 6430 4.7e-05 0.243 TTATTTAATACTACCCCAAAA
SCO2753_Actinomycetales strain + 6565 6584 4.7e-05 0.955 TAAAGCAAGAGCTTGATAAG
YPO0846_Enterobacteriales strain - 8100 8119 4.72e-05 0.27 AGATGAAAAGCTTTTCTTTG
ECA3649_Erwinia strain - 14447 14466 4.74e-05 0.184 AATATTTGTTTGCCATTCCT
ScrR_Bacilli strain - 19988 20007 4.75e-05 0.734 TAAGTTAACCCATAAACATT
ECA2487_Gammaproteobacteria strain + 8836 8855 4.77e-05 0.398 ATTGGAAAGTGTTGCCCGTA
XylR_Rhodobacteriales_Rhizobiales strain + 17626 17648 4.78e-05 0.334 AATATCTTCAAACTTGGATAAAA
NagC_Gammaproteobacteria strain - 18029 18051 4.78e-05 0.0734 AACATTTCAGAAGTCAAATTATA
YPO2568_Gammaproteobacteria strain - 12709 12728 4.79e-05 0.35 TAGTTATAGCACTATCTCTT
YPO2568_Gammaproteobacteria strain + 12709 12728 4.82e-05 0.35 AAGAGATAGTGCTATAACTA
NagC_Gammaproteobacteria strain - 20876 20898 4.82e-05 0.0734 TCCTATTTTTTAAAAAAAATAAA
NadR_Enterobacteriales strain - 1897 1914 4.82e-05 0.176 TTTTTATTTTTTAAACCA
IscR_Beta_Gamma strain + 11210 11234 4.84e-05 0.206 ATTTTTGACGATATTACAAGGACTT
XylR_Rhodobacteriales_Rhizobiales strain + 14979 15001 4.84e-05 0.334 AAGATTTTGCCAAGTGAATTAAA
FixK_FnrN_Rhizobiales strain - 9369 9382 4.85e-05 1 TTGAGATAATGCAA
IscR_Rickettsiales strain + 7030 7048 4.87e-05 0.166 GATGTGGATATTAAAAAAG
IscR_Rickettsiales strain + 15799 15817 4.87e-05 0.166 TGTGGAGATAATAAAAAAT
RKP05499_Bacteria strain - 2336 2355 4.87e-05 0.219 AGATGCAATACTTTACTTAT
LacI_Yersinia strain - 15796 15816 4.88e-05 0.243 TTTTTTATTATCTCCACACGG
AscG_Escherichia_Shigella strain - 8289 8308 4.9e-05 1 ACAAAAAACAGGTATAACAT
XylR_Gammaproteobacteria strain + 7619 7656 4.91e-05 0.0588 ACTAATAATCTTAAAATAGGGGGGAAATTAATGAAAAA
VP2396_Vibrio_Yersinia strain - 2702 2721 4.91e-05 0.093 AATATAATAGCATAAATTAA
RafR_Enterobacteriales strain + 5139 5158 4.92e-05 0.584 AAGTCTACACTTTTAAAATG
CscR_Gammaproteobacteria strain + 17940 17959 4.92e-05 0.244 CAAATTTGGCTTTAATAAAT
SMb20717_Alphaproteobacteria strain - 2336 2355 4.97e-05 0.222 AGATGCAATACTTTACTTAT
XylR_Gammaproteobacteria strain - 8279 8316 4.98e-05 0.0588 ACAGAATAACAAAAAACAGGTATAACATTCAGCCCTTT
XylR_Gammaproteobacteria strain + 12986 13023 4.98e-05 0.0588 GTTAAAATATCAAAAAATCAGTATAAAATTAATATTTG
MalR_Clostridiales_Thermoanaerobacteriales strain + 16852 16871 5e-05 0.281 TTGGCAGATGGCTTGAATAA
RbsR_Clostridia strain + 14801 14820 5.01e-05 0.438 ATAGCTAACTTATTTACGGA
MalR_Staphylococcus strain - 6896 6915 5.02e-05 0.47 TTTTGCAAACGGTATTGCAT
SMb20537_Rhizobiales strain - 17387 17406 5.02e-05 0.295 ATTAATAAAATTTTGAATAT
RBPS06636_Burkholderia strain - 10144 10163 5.03e-05 0.412 CATTAAAACCGGATAAGAGA
AraC_Enterobacteriales strain - 20669 20706 5.03e-05 0.312 CAGTTGTTCCATTTATAATCAAGGCTATAACAGAAATG
MalR_Staphylococcus strain - 12504 12523 5.07e-05 0.47 TTGGGCAAATGTTTTCCATG
XylR_Bacillus_Clostridium_group strain + 3353 3375 5.07e-05 0.146 AGTAGTAGATTATATAAAAAATT
SMA2527_Enterobacteriales_Oceanospirillales strain + 18193 18212 5.08e-05 0.448 AAAAATAAAAGTTAACATAG
AlgR_Rhodobacterales_Rhizobiales strain - 6896 6915 5.08e-05 1 TTTTGCAAACGGTATTGCAT
XylR_Rhizobiales strain - 3555 3574 5.08e-05 0.464 TTTTCTTTATCTATATCAAT
RegR_Streptococcus strain + 20020 20039 5.1e-05 0.527 ATACTTAAATAATTTACAAA
NagQ_a_b_g_Proteobacteria strain - 16507 16524 5.14e-05 0.287 TGCTCTTAATGTTGCATC
DeoR_Enterobacteriales strain + 2828 2843 5.14e-05 0.254 TGTTATCATTACTACA
NadR_Enterobacteriales strain - 4 21 5.16e-05 0.176 TGTTTTCTTCAAAGAACT
ECA3649_Erwinia strain - 220 239 5.16e-05 0.184 TATTTTAGATTTCCAATCAG
CtsR_Firmicutes strain - 13343 13359 5.16e-05 0.33 CGTCAATTATAATAAAA
PtxS_Burkholderiales_Pseudomonadales strain - 16641 16660 5.17e-05 0.289 TCATTGAACCGCTGGCATCA
FruR_Vibrionales_Pseudomonadales strain + 8916 8935 5.18e-05 0.663 TAATTGAAACGATTATGGAT
XylR_Rhodobacteriales_Rhizobiales strain - 3925 3947 5.2e-05 0.334 TTTATCTCCTTACCTAAATTCAT
CcpA_Bacilli strain - 13434 13449 5.2e-05 0.241 TTATAAGCGTATTGTA
ScrR_Gammaproteobacteria strain + 17460 17479 5.2e-05 0.328 AAGATAAAACGGCTTTGGTT
SMA2527_Enterobacteriales_Oceanospirillales strain - 11901 11920 5.21e-05 0.448 AAATCTCAATGGAACGATTG
RPU04121_Methylophilales_Pseudomonadales strain - 18670 18689 5.21e-05 0.489 TTTTGTCACTGCTAAAAGCA
XylR_Gammaproteobacteria strain + 18593 18630 5.21e-05 0.0588 ATTAGAAAATATAGAAGATATAAAAAAAAATATAAAGT
XylR_Gammaproteobacteria strain + 19675 19712 5.21e-05 0.0588 ACAATTTGTCTAAATAAGGAGGAAAAAATTTGTCAACA
NarP_Gammaproteobacteria strain + 12942 12957 5.22e-05 0.566 CTGCTCCTTAAAGGTA
FruR_Vibrionales_Pseudomonadales strain - 10107 10126 5.24e-05 0.663 CGCTTCAATCCTTTCACTTA
LMO0535_Enterococcaceae_Listeriaceae strain - 4644 4663 5.26e-05 0.425 ATCTGTTAAACATGAAATAA
XylR_Bacillus_Clostridium_group strain - 14510 14532 5.26e-05 0.146 ATTAATTTTTTCTTTAAAGCAAT
CscR_Gammaproteobacteria strain + 15919 15938 5.31e-05 0.244 AAAGGTAAAGGTTGATGATG
XylR_Rhizobiales strain + 20639 20658 5.31e-05 0.464 TAGGATGGGCATACCTTATC
SPy1297_Streptococcus strain + 2785 2804 5.31e-05 0.277 TATCATCACAATTTAAGTTT
LacI_Yersinia strain - 19995 20015 5.36e-05 0.243 TATTTTAATAAGTTAACCCAT
XylR_Gammaproteobacteria strain + 20179 20216 5.37e-05 0.0588 GGAAAATTCCGATTTAAAAGATAGAATAAATTTAATTA
SCO7411_Actinobacteridae strain + 7244 7263 5.38e-05 1 ATATGATTATTTATCCATTT
PckR_Rhizobiales strain + 17529 17548 5.4e-05 0.238 GAAATGAAACGATTATAGAT
RbtR_Rhizobiales_Rhodobacterales strain - 6896 6915 5.4e-05 0.395 TTTTGCAAACGGTATTGCAT
ScrR_Firmicutes_Burkholderiales strain + 3722 3741 5.41e-05 0.261 CAATGGAACTAATATTGATA
NadR_Enterobacteriales strain + 7961 7978 5.42e-05 0.176 TGTTATAGCTATATAACA
RbtR_Rhizobiales_Rhodobacterales strain + 1398 1417 5.43e-05 0.395 TTGAACAATTGAATTTTAAA
SPOA0242_Alpha_Burkholderiales strain + 15013 15032 5.44e-05 0.987 AAATGAAAGAGGTAACAAAT
SMb20717_Alphaproteobacteria strain - 17187 17206 5.46e-05 0.222 ATATCTATACGTTTATATAT
NrdR_Firmicutes strain - 587 602 5.48e-05 0.354 CCAAAATATATGGTCT
YvdE_Bacilli strain + 11842 11861 5.48e-05 0.39 TGTTGTAAACGGCAAAAACA
lmo0734_Listeria_Symbiobacterium strain + 3566 3585 5.48e-05 0.413 TAAAGAAAAGCTTTTGTCAT
TnrA_Bacilli strain + 8361 8377 5.5e-05 0.171 GGGAATATTTTATGAAA
GalR_Gammaproteobacteria strain - 804 819 5.5e-05 0.653 GTGTAAACATTTTTAT
NagC_Gammaproteobacteria strain + 18419 18441 5.52e-05 0.08 TTTATTTTAAATAATATAAAATA
CtsR_Firmicutes strain + 9730 9746 5.52e-05 0.33 AATCAGAAATACGCAAA
LMO0535_Enterococcaceae_Listeriaceae strain + 19940 19959 5.53e-05 0.425 AATTGTAATTCAGTATCTGA
PckR_Rhizobiales strain + 6585 6604 5.53e-05 0.238 ATAATCAATGGATTAAAATA
RL4253_Rhodobacterales_Rhizobiales strain + 12094 12113 5.55e-05 0.183 GATTCCAGACGATTTCATAG
RBPS06636_Burkholderia strain - 1741 1760 5.59e-05 0.412 AATGCAATGGGATTTGGACG
Fnr_Gammaproteobacteria strain + 16570 16583 5.59e-05 0.392 TCGATTAAGGACAA
MarA_Enterobacteriales strain - 4048 4067 5.6e-05 0.701 ATTGCATATACTGACAAAAC
PsrA_Proteobacteria strain + 4734 4753 5.6e-05 0.535 ATTAATAGGTATGTTTATAG
ModE_Gammaproteobacteria strain - 3347 3372 5.61e-05 0.15 TTTTTATATAATCTACTACTTTCTGT
LJ0739_Lactobacillus strain + 18241 18260 5.62e-05 0.289 TGTTTTAAAAGTTTATAAAA
SMb20717_Alphaproteobacteria strain - 2461 2480 5.63e-05 0.222 TACTTAAATTCATTACATTA
MalR_Bacillaceae strain + 11440 11459 5.63e-05 0.35 TGGCGCTATCGATATCCTCA
IscR_Rhodospirillales_Sphingomonadales strain + 12404 12422 5.64e-05 1 GCAGAGAAAATAGCACTTG
LJ0739_Lactobacillus strain - 18782 18801 5.65e-05 0.289 TAGTCAAATCTTTTAAATAT
ScrR_Firmicutes_Burkholderiales strain + 17847 17866 5.66e-05 0.261 AAAAAGAACAGATTATAAAT
LacI_Yersinia strain - 2282 2302 5.68e-05 0.243 AATTAATTTACATTCAGCCCA
XylR_Gammaproteobacteria strain + 5788 5825 5.69e-05 0.0597 AAAAGAGATTTAAATTTAAAAAATAAAAATTATAGGAG
IscR_Rickettsiales strain + 18422 18440 5.7e-05 0.166 ATTTTAAATAATATAAAAT
ExuR_Bacilli_Clostridia strain + 11040 11059 5.7e-05 0.663 AAGTGAGAACCTTAGCAGAT
bll3974_Rhizobiales strain + 14613 14632 5.72e-05 0.283 TGGGGACATTGATACCATTG
YPO0846_Enterobacteriales strain - 3284 3303 5.74e-05 0.27 ATTTATAAAAGTCTTCATCA
TnrA_Bacilli strain + 7813 7829 5.74e-05 0.171 TCTTATATTCTTTTACA
RBPS06636_Burkholderia strain - 8233 8252 5.74e-05 0.412 CTTCCACAGCCGTATTGTTA
XCC3356_Alpha_Gamma strain + 6867 6886 5.75e-05 0.517 TTTGGATATCGGTTGTGGTC
SPy1297_Streptococcus strain - 11524 11543 5.76e-05 0.277 CTCCTTAAAGTTTTAATTTT
SPy1297_Streptococcus strain - 17738 17757 5.76e-05 0.277 TTAATTAAATTTTCAAGATT
NagQ_a_b_g_Proteobacteria strain - 13861 13878 5.77e-05 0.287 TGGTATTGGAATTGCTTC
bll3974_Rhizobiales strain + 2773 2792 5.77e-05 0.283 ATATGAAAAACATATCATCA
MsmR_Lactobacillales strain + 14837 14856 5.78e-05 0.145 AAAGAGAAACAATACAATAT
BT0487_Bacteroides strain - 10625 10644 5.79e-05 1 GTATGTTTTCGAACAAAGTT
SPy1297_Streptococcus strain + 2492 2511 5.79e-05 0.277 TAAGTTAAAAATATAATTTA
SPy1297_Streptococcus strain - 2492 2511 5.79e-05 0.277 TAAATTATATTTTTAACTTA
SAV7156_Actinomycetales strain - 8540 8559 5.8e-05 1 TCATTTGTCCACTCCTCAAC
SMA1711_Rhodobacterales_Rhizobiales strain + 10753 10772 5.81e-05 0.91 TTATGCTTCAGCTTGGAAAG
ModE_Gammaproteobacteria strain - 17170 17195 5.81e-05 0.15 TTTATATATAATATTAATTTTTACAA
mlr8213_Mesorhizobium_Streptomyces strain + 12903 12922 5.82e-05 1 AATGGCTTGGGATACCATTT
AlgR_Rhodobacterales_Rhizobiales strain - 1741 1760 5.82e-05 1 AATGCAATGGGATTTGGACG
RbtR_Rhizobiales_Rhodobacterales strain + 11706 11725 5.84e-05 0.395 ATGGGCGAACAATGGTGCCT
XylR_Rhizobiales strain - 18317 18336 5.84e-05 0.464 TTTACCTTCCGTACCTTATA
LldR_Enterobacteriales strain + 19841 19861 5.89e-05 0.436 AATAGTAACAGAACCAATACT
AglR_Rhizobiales strain + 20222 20241 5.89e-05 0.287 AAATTGCAAAGTTACAATGA
NagR_Xanthomonadales_Alteromonadales strain + 17035 17052 5.91e-05 1 ATTGTTATCGATGTTGAA
ABC1168_Bacillus_Burkholderia_Rhodobacteriales strain + 812 831 5.92e-05 0.736 GTTTACACATCATTGCAGAT
FruR_Alpha_Beta_Xanthomonadales strain + 9699 9718 5.95e-05 0.407 TAGCGGAAAAGGTTCATGGT
NagC_Gammaproteobacteria strain + 18006 18028 5.95e-05 0.0821 ATCAATTAGACACAAAAAAAATG
XylR_Gammaproteobacteria strain + 17649 17686 5.96e-05 0.0597 ATAAATTAAAAGAATTAGATGATATAAATAAAAAAATA
RBPS06636_Burkholderia strain - 6525 6544 5.97e-05 0.412 CCTCCAAGCAGATTTGTACG
XCC3356_Alpha_Gamma strain - 17024 17043 5.97e-05 0.517 GATAACAATAGATTTTATCT
PckR_Rhizobiales strain - 19511 19530 5.98e-05 0.238 CATTCTTATCCATTGATTGT
RPU04121_Methylophilales_Pseudomonadales strain - 13271 13290 6.01e-05 0.489 TTATATTACCGGCAGCATCC
Atu5393_Rhizobiales strain - 20954 20973 6.01e-05 0.762 TAACCGGAAGATTCGCCCTC
MalR_Pediococcus_Leuconostoc strain + 6185 6204 6.02e-05 0.949 GGAAGGATGCGCCTGCCCTA
KdgR_Bacillaceae strain - 12831 12850 6.04e-05 0.525 AGGATACATCCATTTGGCAA
STM3696_Enterobacteriales_Burkholderiales strain - 1494 1513 6.06e-05 0.607 GAATGACGCCGATATTAATA
SMb21706_Rhizobiales strain + 12198 12217 6.1e-05 0.23 TTGAAAAAATCATGTCAGTA
ScrR_Bacilli strain + 10407 10426 6.11e-05 0.734 TGGGTCAAATGCTTTATTTA
RBPS06636_Burkholderia strain - 2212 2231 6.11e-05 0.412 ATTTTAAACCTGCTTTTTCA
ECA3649_Erwinia strain + 2675 2694 6.13e-05 0.184 ATTATTTGTATACTATTGAT
Atu4556_Rhizobiales strain - 11895 11914 6.13e-05 0.25 CAATGGAACGATTGTCCTGC
GalRS_Gammaproteobacteria strain + 7095 7114 6.14e-05 0.474 TGCTGTAAGTGATTATAAAG
ExuR_Bacilli_Clostridia strain + 17034 17053 6.15e-05 0.663 TATTGTTATCGATGTTGAAA
XylR_Bacillus_Clostridium_group strain + 19289 19311 6.16e-05 0.146 GTCAGGTAATGTAATTAACAAAT
SCO0806_Actinomycetales strain + 6224 6243 6.16e-05 0.487 TTTTTTAAACCATTTAGTAC
TnrA_Bacilli strain - 221 237 6.17e-05 0.171 TTTTAGATTTCCAATCA
XylR_Gammaproteobacteria strain + 17768 17805 6.18e-05 0.0597 GAAAAATATCAGAATGCTGTTAAAAATAACAGCAACTC
XylR_Rhizobiales strain - 6610 6629 6.18e-05 0.464 ATTGATTTATATACCACCTT
IscR_Rickettsiales strain + 1180 1198 6.19e-05 0.166 ATTGAAGGCATTTAAAAAC
IscR_Rickettsiales strain + 20245 20263 6.19e-05 0.166 GGAAAAGACATTAAACAAT
ModE_Gammaproteobacteria strain - 13633 13658 6.2e-05 0.15 CAGTTCTTTTTTATTGGAATCAATCA
YPO0846_Enterobacteriales strain - 802 821 6.21e-05 0.27 ATGTGTAAACATTTTTATCA
ModE_Gammaproteobacteria strain - 17329 17354 6.22e-05 0.15 ATATTCTATATAAAAGATGATTTTCC
RbsR_Bacillales_Lactobacillales strain + 802 821 6.22e-05 0.342 TGATAAAAATGTTTACACAT
SMb21272_Rhizobiales strain - 2690 2709 6.22e-05 0.465 TAAATTAAAAATTAAATCAA
bll3974_Rhizobiales strain - 532 551 6.24e-05 0.283 TACCAACAACCTTATCAGCA
ECA2487_Gammaproteobacteria strain + 10286 10305 6.24e-05 0.398 GTTGGAAAACGTCTTGCGGA
ArcA_Gammaproteobacteria strain - 12388 12402 6.28e-05 0.312 TTCCATTGTATAAAC
ScrR_Gammaproteobacteria strain + 6553 6572 6.29e-05 0.328 AAACAAATGCGGTAAAGCAA
IscR_Beta_Gamma strain + 19857 19881 6.29e-05 0.206 ATACTTGAACCTTTCAGGAAACTTC
FruR_Gammaproteobacteria strain + 17531 17546 6.3e-05 0.609 AATGAAACGATTATAG
NagQ_a_b_g_Proteobacteria strain + 16617 16634 6.31e-05 0.287 TGGGAATTTTATTGTATT
TreR_Gammaproteobacteria strain + 3697 3716 6.31e-05 1 TTTATGGATTGTTGCCGTAT
FruR_Gammaproteobacteria strain - 17538 17553 6.32e-05 0.609 GGTGAATCTATAATCG
SMb21706_Rhizobiales strain + 15519 15538 6.32e-05 0.23 GAGAAAAATCCTTTGAACCG
NagC_Gammaproteobacteria strain + 5798 5820 6.37e-05 0.0838 TAAATTTAAAAAATAAAAATTAT
RafR_Enterobacteriales strain + 11093 11112 6.37e-05 0.584 AATCCTAAATGGATAGAAGG
TnrA_Bacilli strain + 12241 12257 6.37e-05 0.171 TGGAAGGTAGCCTGACA
MalI_Enterobacteriales strain + 3283 3302 6.38e-05 0.338 TTGATGAAGACTTTTATAAA
McbR_Corynebacterium strain - 3780 3795 6.38e-05 1 TAAACTGCTCCGGATA
DeoR_Enterobacteriales strain + 18092 18107 6.39e-05 0.254 TTAAAGCAAAATAACA
SMb21706_Rhizobiales strain - 15326 15345 6.39e-05 0.23 AAGGGACATCCTTCTACCAC
BCAS0099_Burkholderiales_Rhodobacterales strain + 20530 20549 6.4e-05 1 ACATGAAAGAGAATAGACTT
LJ0739_Lactobacillus strain - 4665 4684 6.4e-05 0.289 TGTTTAAGGCGTTATAATTC
CcpA_Bacilli strain - 15950 15965 6.42e-05 0.241 AAATATGCGCTATCAG
GntR_Pseudomonadales_Burkholderiales strain + 6073 6092 6.42e-05 1 AGAAGATAGCCCTTTTTGAA
GalRS_Gammaproteobacteria strain + 6626 6645 6.43e-05 0.474 CAATGGAATCGCTTAATAAA
ExuR_Bacilli_Clostridia strain + 17187 17206 6.43e-05 0.663 ATATATAAACGTATAGATAT
SMb21272_Rhizobiales strain - 11524 11543 6.44e-05 0.465 CTCCTTAAAGTTTTAATTTT
RbsR_Clostridia strain - 8916 8935 6.44e-05 0.451 ATCCATAATCGTTTCAATTA
NarP_Gammaproteobacteria strain - 8295 8310 6.45e-05 0.566 TAACAAAAAACAGGTA
XylR_Bacillus_Clostridium_group strain - 1895 1917 6.46e-05 0.146 AATTTTTTATTTTTTAAACCAGC
lmo0734_Listeria_Symbiobacterium strain + 1616 1635 6.47e-05 0.413 ATATTGAAAGGGTTACACAC
IscR_Beta_Gamma strain + 18741 18765 6.48e-05 0.206 ATAGGTGAAAATAAGGTTCAGGAAC
MsmR_Lactobacillales strain + 17425 17444 6.5e-05 0.151 TATAGGAAAAGTTTCATTTA
IscR_Beta_Gamma strain + 20572 20596 6.5e-05 0.206 AAAATAGAAAAACATCCTCAGATAT
MalR_Bacillaceae strain - 13214 13233 6.53e-05 0.35 AAATGCTAACGCCTTCTGCA
SMA1711_Rhodobacterales_Rhizobiales strain - 6293 6312 6.53e-05 0.91 CAATGACACCTCTTCCAAAA
RbsR_Actinomycetales strain + 802 821 6.54e-05 0.869 TGATAAAAATGTTTACACAT
BH1250_Bacillaceae_Lactobacillaceae strain + 5033 5052 6.56e-05 0.384 AGATGGAATAGAATTCAGAT
GalRS_Gammaproteobacteria strain + 6917 6936 6.57e-05 0.474 GAGTAAAATCGGTTACGGCG
XylR_Bacillus_Clostridium_group strain + 20407 20429 6.57e-05 0.146 ATTAGAAAATTTAAAAAAGAAAT
Atu4556_Rhizobiales strain - 12198 12217 6.59e-05 0.25 TACTGACATGATTTTTTCAA
NadR_Enterobacteriales strain + 4106 4123 6.59e-05 0.194 TGACGACCTTATTAAATA
LJ0739_Lactobacillus strain + 20021 20040 6.6e-05 0.289 TACTTAAATAATTTACAAAT
PsrA_Proteobacteria strain - 14918 14937 6.6e-05 0.535 ATGCAAACACCAGCATCAAA
LacI_Yersinia strain - 8897 8917 6.6e-05 0.243 TAATTCTTTACCATCAGCAGG
YPO0846_Enterobacteriales strain + 8100 8119 6.61e-05 0.27 CAAAGAAAAGCTTTTCATCT
XylR_Gammaproteobacteria strain + 14774 14811 6.62e-05 0.0597 GAAGAATATCTAAGTACCATTGATGAAATAGCTAACTT
MalR_Clostridium_perfringens strain + 2825 2844 6.62e-05 0.362 AATTGTTATCATTACTACAG
XylR_Bacillus_Clostridium_group strain - 1552 1574 6.63e-05 0.146 ATTATTTCATCTGAAAAACACCC
TnrA_Bacilli strain + 20875 20891 6.65e-05 0.171 TTTTATTTTTTTTAAAA
bll3974_Rhizobiales strain + 16575 16594 6.65e-05 0.283 TAAGGACAAGGATATAAGAG
NtdR_Bacillales strain - 12084 12103 6.67e-05 0.615 GTCTGGAATCTGTAATATGC
DeoR_Enterobacteriales strain + 12985 13000 6.68e-05 0.254 TGTTAAAATATCAAAA
XylR_Gammaproteobacteria strain - 4355 4392 6.71e-05 0.0597 AAATATAACAACCATATACGGATTATTGATGATTATTG
XylR_Gammaproteobacteria strain + 15865 15902 6.75e-05 0.0597 AGAGAAGCAGGAAGAATTAAGGCAAAAGATTGTAAATG
RKP05499_Bacteria strain + 20006 20025 6.75e-05 0.253 TATTAAAATAGATTATACTT
DeoR_Enterobacteriales strain - 19835 19850 6.76e-05 0.254 TGTTACTATTATAACA
YPO2568_Gammaproteobacteria strain + 9958 9977 6.78e-05 0.376 TATTGATAGAGCTTCTAAAG
ECA3649_Erwinia strain + 6662 6681 6.79e-05 0.184 ATTTTTGGCAGAATGTTTGG
AraC_Enterobacteriales strain - 16734 16771 6.81e-05 0.312 CTGCCGCATCACCTTTAAATACAACCATTGCCACCTCA
ECA3649_Erwinia strain + 17068 17087 6.84e-05 0.184 ACTTTTGGACTTGCAAAAGA
DasR_Streptomycineae strain + 19658 19673 6.84e-05 1 ACAGGTCAATTCAATA
LldR_Enterobacteriales strain - 19841 19861 6.85e-05 0.436 AGTATTGGTTCTGTTACTATT
IscR_Rhodospirillaceae_Rhodobacterales strain + 4791 4809 6.85e-05 0.719 CATAATTGGTTTTATCGGA
XylR_Gammaproteobacteria strain + 18178 18215 6.92e-05 0.0597 AATAAAAGAAGGAGAAAAAATAAAAGTTAACATAGATG
GntR_Gammaproteobacteria strain + 17551 17570 6.92e-05 0.518 ACCTATTACAGGTGAAATAA
ScrR_Firmicutes_Burkholderiales strain - 18709 18728 6.94e-05 0.261 AAATGAAACTGCTTCTTTTA
SCO0806_Actinomycetales strain + 13787 13806 6.97e-05 0.487 TACTGGAAACGGTACAGGAA
SCO0806_Actinomycetales strain + 13826 13845 6.97e-05 0.487 TACTGGAAACGGTACAGGAA
ScrR_Gammaproteobacteria strain + 3628 3647 6.98e-05 0.328 TAGTTAAACAGGATTATCAA
Rfer_1112_Burkholderiales strain - 1616 1635 7e-05 0.375 GTGTGTAACCCTTTCAATAT
XylR_Bacillus_Clostridium_group strain - 7445 7467 7.03e-05 0.146 CTTTGTTTCTTGGCGGAATAGAC
XCC3356_Alpha_Gamma strain - 12094 12113 7.04e-05 0.517 CTATGAAATCGTCTGGAATC
SMb21706_Rhizobiales strain - 4237 4256 7.05e-05 0.231 GAGGCAAGAGGATTTCTAAG
MalI_Enterobacteriales strain + 3628 3647 7.06e-05 0.338 TAGTTAAACAGGATTATCAA
CcpA_Bacilli strain - 1355 1370 7.07e-05 0.241 TATATAGCGGTTTCTT
VP2396_Vibrio_Yersinia strain - 1407 1426 7.08e-05 0.118 AATCAATTATTTAAAATTCA
AglR_Rhizobiales strain - 17794 17813 7.08e-05 0.287 CATCTGCAGAGTTGCTGTTA
VP2396_Vibrio_Yersinia strain + 19722 19741 7.09e-05 0.118 ACTATATTAACTACACTAAA
MalR_Clostridiales_Thermoanaerobacteriales strain + 6749 6768 7.11e-05 0.334 TTTGGAATAAATTTGCACCA
NagC_Gammaproteobacteria strain + 4650 4672 7.11e-05 0.0839 CATGTTTAACAGATGGAATTATA
RL4253_Rhodobacterales_Rhizobiales strain - 20815 20834 7.13e-05 0.214 AATTTATGATGTTTTCTTAT
SMb21272_Rhizobiales strain + 2076 2095 7.14e-05 0.465 TTGCTTCATGGATTAAACGT
NagC_Gammaproteobacteria strain - 8048 8070 7.16e-05 0.0839 TATATTTTAGGGTCCGCATAATC
RSc1790_Burkholderiales_Pseudomonadales strain + 802 821 7.17e-05 0.853 TGATAAAAATGTTTACACAT
XCC2209_Xanthomonadaceae strain - 13214 13233 7.17e-05 0.431 AAATGCTAACGCCTTCTGCA
YvdE_Bacilli strain - 13271 13290 7.18e-05 0.39 TTATATTACCGGCAGCATCC
MarA_Enterobacteriales strain + 20975 20994 7.2e-05 0.701 AGAGCCTGAAATACTAAAAA
GntR_Gammaproteobacteria strain + 3530 3549 7.2e-05 0.518 AGATGAAACTGGTAAAAATG
DeoR_Enterobacteriales strain - 10213 10228 7.2e-05 0.254 TGTCGGCAAAATATCA
IscR_Beta_Gamma strain - 4337 4361 7.2e-05 0.206 ATTATTGACTCAGATGCACTGTTTT
Fnr_Gammaproteobacteria strain + 7581 7594 7.23e-05 0.392 ATGATATAGCACAA
NagC_Gammaproteobacteria strain + 697 719 7.24e-05 0.0839 TGTAATTTTTGTTGCATATTTAA
YPO2568_Gammaproteobacteria strain + 15013 15032 7.25e-05 0.376 AAATGAAAGAGGTAACAAAT
Rfer_1112_Burkholderiales strain + 11040 11059 7.25e-05 0.375 AAGTGAGAACCTTAGCAGAT
XylR_Bacillus_Clostridium_group strain - 18212 18234 7.25e-05 0.146 CTTAATTGATTATCATATCCATC
IscR_Beta_Gamma strain - 20572 20596 7.27e-05 0.206 ATATCTGAGGATGTTTTTCTATTTT
LacI_Yersinia strain + 7958 7978 7.27e-05 0.243 AAATGTTATAGCTATATAACA
XylR_Gammaproteobacteria strain - 20426 20463 7.28e-05 0.061 AGAAGTATTTTAAATTTTGCTTTGAAAATATTCAATTT
MsmR_Lactobacillales strain - 5293 5312 7.28e-05 0.152 AAGAAGAACGGCATCAAATA
PdhR_Gammaproteobacteria strain + 9389 9409 7.29e-05 0.43 TATCCTGATATTGCCATTGGA
ABC0302_Bacilliales strain + 12328 12347 7.29e-05 0.309 ATATGACAATGACCTTAAAA
ModE_Gammaproteobacteria strain + 17289 17314 7.3e-05 0.15 TTTCTATGTAAAATATTAATTTATGC
AraC_Enterobacteriales strain - 7858 7895 7.32e-05 0.312 CAATAGGTTTATTTAAATCTTTTGCCTTTGCTTCCAAC
YcjW_Listeriaceae_Enterobacteria strain - 6331 6350 7.33e-05 1 TGATGGGTCAACTACCATAA
RbsR_Bacilli strain - 7250 7269 7.33e-05 0.505 AAGGTTAAATGGATAAATAA
SMb20537_Rhizobiales strain + 3104 3123 7.34e-05 0.315 ATTATCAAAATTGCCAGTAG
PdhR_Gammaproteobacteria strain + 18980 19000 7.34e-05 0.43 ATATGGGGTATTACCGGATGA
RbtR_Rhizobiales_Rhodobacterales strain + 11440 11459 7.37e-05 0.395 TGGCGCTATCGATATCCTCA
STM3696_Enterobacteriales_Burkholderiales strain - 15013 15032 7.37e-05 0.607 ATTTGTTACCTCTTTCATTT
LMO1727_Enterococcaceae_Listeriaceae strain - 10681 10700 7.37e-05 0.537 TTAATGTGGCGTTTCTCCAA
ScrR_Firmicutes_Burkholderiales strain - 2825 2844 7.38e-05 0.261 CTGTAGTAATGATAACAATT
ScrR_Firmicutes_Burkholderiales strain + 8322 8341 7.38e-05 0.261 ATGAAGGACTAGGTACAAGA
AraC_Enterobacteriales strain - 13655 13692 7.38e-05 0.312 TAACAGAAGTATTTATGACCTCAGCATCTTTGGGCAGT
LMO0535_Enterococcaceae_Listeriaceae strain - 2336 2355 7.39e-05 0.425 AGATGCAATACTTTACTTAT
RbtR_Rhizobiales_Rhodobacterales strain + 19507 19526 7.39e-05 0.395 ATGTACAATCAATGGATAAG
LacI_Yersinia strain - 16268 16288 7.39e-05 0.243 TTTTTTTTTATCATCACCATC
LMO0535_Enterococcaceae_Listeriaceae strain + 10235 10254 7.4e-05 0.425 AACTTTTATTCATTAGATCC
Atu3062_Alphaproteobacteria_Pseudomonas strain - 1353 1372 7.41e-05 1 TTTATATAGCGGTTTCTTTA
Atu5393_Rhizobiales strain - 13266 13285 7.42e-05 0.762 TTACCGGCAGCATCCCACTG
ECA2487_Gammaproteobacteria strain + 10160 10179 7.42e-05 0.398 AATGGAAAATACATTCCAGC
FruR_Gammaproteobacteria strain - 12201 12216 7.43e-05 0.609 ACTGACATGATTTTTT
GntR_Gammaproteobacteria strain + 2491 2510 7.47e-05 0.518 TTAAGTTAAAAATATAATTT
SMc04401_Alpha_Gamma strain + 11980 11999 7.47e-05 0.687 GACTTGGAATGTTAAAATCA
Fnr_Gammaproteobacteria strain - 19006 19019 7.48e-05 0.392 TTTAATAAAATCAA
MsmR_Lactobacillales strain + 20476 20495 7.49e-05 0.152 AGAATCAGTCCTTTCAATAG
MalR_Clostridium_perfringens strain + 6626 6645 7.49e-05 0.362 CAATGGAATCGCTTAATAAA
CcpA_Bacilli strain + 1355 1370 7.49e-05 0.241 AAGAAACCGCTATATA
SMb21272_Rhizobiales strain + 2817 2836 7.56e-05 0.465 TTGCTTACAATTGTTATCAT
SO3516_Alteromonadales strain + 17034 17053 7.57e-05 1 TATTGTTATCGATGTTGAAA
MarA_Enterobacteriales strain + 16201 16220 7.57e-05 0.701 ACAGCAGGAAAAACAACAAC
BH3692_Bacilli_Clostridia strain + 11299 11318 7.57e-05 1 AACCCGACGTCTTTTGGAGG
AglR_Rhizobiales strain - 1054 1073 7.57e-05 0.287 CAACTGTAATATGACCGATT
NadR_Enterobacteriales strain + 8443 8460 7.6e-05 0.205 TGAATTCGATAAAAAAGA
ScrR_Gammaproteobacteria strain + 11640 11659 7.6e-05 0.328 AGGAAACACAGGTTTATCTA
AraC_Enterobacteriales strain - 8887 8924 7.61e-05 0.312 TTTCAATTAATTCTTTACCATCAGCAGGAGGGTCTACA
CcpA_Bacilli strain + 18711 18726 7.61e-05 0.241 AAAGAAGCAGTTTCAT
MalR_Staphylococcus strain - 5884 5903 7.62e-05 0.565 TTGTGCTAATAATGTTACTA
NtdR_Bacillales strain - 14794 14813 7.64e-05 0.615 ATAAGTTAGCTATTTCATCA
bll3974_Rhizobiales strain + 16104 16123 7.66e-05 0.293 GAATGAGAAAGAAACCCTTC
MalR_Pediococcus_Leuconostoc strain + 16550 16569 7.67e-05 0.949 ATAAAGAAGGGCTTGCAATA
KdgR_Bacillaceae strain + 19044 19063 7.69e-05 0.525 AGAATAAAAGGATTAATGAC
ECA2487_Gammaproteobacteria strain - 3567 3586 7.69e-05 0.398 CATGACAAAAGCTTTTCTTT
ScrR_Gammaproteobacteria strain - 17460 17479 7.69e-05 0.328 AACCAAAGCCGTTTTATCTT
Atu4556_Rhizobiales strain - 14231 14250 7.71e-05 0.263 CAATGTAATGTTTTACTTAA
XCC2209_Xanthomonadaceae strain + 31 50 7.72e-05 0.431 CGCTGGAAGAAATTACTCGG
ModE_Gammaproteobacteria strain + 18605 18630 7.72e-05 0.15 AGAAGATATAAAAAAAAATATAAAGT
ABC0302_Bacilliales strain - 1494 1513 7.73e-05 0.309 GAATGACGCCGATATTAATA
FadR_Gammaproteobacteria strain - 20852 20868 7.76e-05 1 GTAAGGGACGAGAAGTC
LacI_Yersinia strain - 12677 12697 7.77e-05 0.243 ATTTGTATTATCTTTAACCGC
lmo0734_Listeria_Symbiobacterium strain - 19995 20014 7.77e-05 0.413 ATTTTAATAAGTTAACCCAT
lmo0734_Listeria_Symbiobacterium strain + 19044 19063 7.79e-05 0.413 AGAATAAAAGGATTAATGAC
XylR_Rhodobacteriales_Rhizobiales strain + 19968 19990 7.8e-05 0.334 ATTATTGTAAAACTTGTGTTAAT
PsrA_Proteobacteria strain - 3629 3648 7.8e-05 0.535 TTTGATAATCCTGTTTAACT
IscR_Beta_Gamma strain - 2630 2654 7.8e-05 0.206 ATACCTGAAAACAGTTTTAAAGTAA
XylR_Rhodobacteriales_Rhizobiales strain + 19120 19142 7.82e-05 0.334 AATTATTTGACAACCTCAAAAAT
NagR_Xanthomonadales_Alteromonadales strain - 14614 14631 7.82e-05 1 AATGGTATCAATGTCCCC
RKP05499_Bacteria strain + 2773 2792 7.83e-05 0.253 ATATGAAAAACATATCATCA
KdgR_Bacillaceae strain + 6224 6243 7.83e-05 0.525 TTTTTTAAACCATTTAGTAC
MalI_Enterobacteriales strain + 7502 7521 7.85e-05 0.338 AAGGAGGAAAGATTTAACAA
MalI_Enterobacteriales strain + 15153 15172 7.85e-05 0.338 TATATAATATGTATTATCCA
NagQ_a_b_g_Proteobacteria strain + 10934 10951 7.86e-05 0.318 TGCTGCTATTTTGGTACT
NagC_Gammaproteobacteria strain - 922 944 7.87e-05 0.0877 GTTTTTTATCATTAGAAATATTT
TnrA_Bacilli strain - 5773 5789 7.89e-05 0.171 TTTAATATTTTATATCG
RbsR_Actinomycetales strain - 2336 2355 7.9e-05 0.869 AGATGCAATACTTTACTTAT
MtaR_Streptococcaceae strain + 2519 2535 7.91e-05 0.793 TATCGCTTATAATTATT
TnrA_Bacilli strain - 10630 10646 7.92e-05 0.171 GGGTATGTTTTCGAACA
XylR_Bacillus_Clostridium_group strain + 1891 1913 7.93e-05 0.15 ATTGGCTGGTTTAAAAAATAAAA
MalR_Clostridiales_Thermoanaerobacteriales strain + 15882 15901 7.93e-05 0.334 TAAGGCAAAAGATTGTAAAT
SMb20717_Alphaproteobacteria strain - 5033 5052 7.95e-05 0.283 ATCTGAATTCTATTCCATCT
LldR_Enterobacteriales strain - 3543 3563 7.97e-05 0.436 TATATCAATACTACCATTTTT
NarP_Gammaproteobacteria strain + 19130 19145 7.99e-05 0.566 CAACCTCAAAAATGTA
LJ0739_Lactobacillus strain - 2784 2803 8e-05 0.292 AACTTAAATTGTGATGATAT
XylR_Gammaproteobacteria strain + 5552 5589 8e-05 0.0651 GAAACAGACAGTAGAAGAGGAAAATATTGCTGCAATTG
SMb21706_Rhizobiales strain + 20659 20678 8.01e-05 0.241 GAGAAAAAGGCATTTCTGTT
ModE_Gammaproteobacteria strain + 7267 7292 8.01e-05 0.15 CTTCTTTATAGTTTAGGATATTATCC
IscR_Rickettsiales strain + 3165 3183 8.02e-05 0.198 CTTGTAGAGGTAAAGCCAG
SMb21598_Rhizobiales strain - 12945 12964 8.04e-05 1 TTTGGTATACCTTTAAGGAG
YE2053_Rhizobiales_Burkholderiales_Yersinia strain + 6042 6061 8.05e-05 1 CTAAGAGCCCGTATGCAAAG
ECA3649_Erwinia strain - 14128 14147 8.08e-05 0.184 ATAATTGGCATTTTGTACGT
MalR_Clostridium_perfringens strain + 13496 13515 8.11e-05 0.362 TATTGGTAATTATAACAAGG
XylR_Rhodobacteriales_Rhizobiales strain + 1284 1306 8.13e-05 0.334 TTTTATATCCGGAGCAATTTAAA
TnrA_Bacilli strain - 7472 7488 8.15e-05 0.171 TGTCATAATACCCATCC
RBPS06636_Burkholderia strain + 12782 12801 8.17e-05 0.433 AATACAAAGCTATTTGGTGG
TreR_Gammaproteobacteria strain + 13583 13602 8.17e-05 1 AAAAGGGACTGACCCGGTTT
AglR_Rhizobiales strain + 13787 13806 8.19e-05 0.287 TACTGGAAACGGTACAGGAA
AglR_Rhizobiales strain + 13826 13845 8.19e-05 0.287 TACTGGAAACGGTACAGGAA
RbsR_Bacillales_Lactobacillales strain - 11685 11704 8.2e-05 0.394 TTCTATAAATGGTGAAACAT
BCAS0099_Burkholderiales_Rhodobacterales strain + 17403 17422 8.2e-05 1 TAATAATAGCTGTTATATTG
STM3633_Alpha_Gamma strain + 5525 5544 8.24e-05 0.932 AAATCAAATCGAGGTGCTGA
VP2396_Vibrio_Yersinia strain - 18166 18185 8.25e-05 0.127 CTTTTATTAATTTATAATCA
Crp_Gammaproteobacteria strain + 97 118 8.27e-05 1 AAATGTTAACTCAAGTAAAGGA
VC1286_Vibrionales_Enterobacteriales strain + 18709 18728 8.27e-05 1 TAAAAGAAGCAGTTTCATTT
BB0548_Burkholderiales strain - 10286 10305 8.28e-05 0.774 TCCGCAAGACGTTTTCCAAC
PdhR_Gammaproteobacteria strain - 14763 14783 8.3e-05 0.43 GATATTCTTCATACCATCTCC
MalR_Lactobacillales strain - 8455 8474 8.31e-05 1 CTTTACAAGCCGTTTCTTTT
SO3516_Alteromonadales strain - 8152 8171 8.33e-05 1 CCTTTACAGCATTTTCTCTA
PtxS_Burkholderiales_Pseudomonadales strain - 2157 2176 8.33e-05 0.396 TATTTTAACAGCTTCTATCA
XylR_Gammaproteobacteria strain + 18095 18132 8.35e-05 0.0652 AAGCAAAATAACATGCTTGTTAAAATAATAGATAATTC
RKP05499_Bacteria strain + 2461 2480 8.37e-05 0.253 TAATGTAATGAATTTAAGTA
LacI_Yersinia strain - 8130 8150 8.42e-05 0.243 AATTTTTATACCATGAGAAGT
ECA3649_Erwinia strain + 5709 5728 8.44e-05 0.184 GTTTATGGGATTCCCATTGC
NarP_Gammaproteobacteria strain + 13172 13187 8.49e-05 0.566 TTCTTCTATTGCGGTA
VP2396_Vibrio_Yersinia strain + 827 846 8.49e-05 0.127 CAGATAATAGGTAAAGTAAT
XylR_Gammaproteobacteria strain - 14141 14178 8.52e-05 0.0652 TCATAATCATTGATAGAGCAAATAAATATATATAATTG
YPO0846_Enterobacteriales strain - 17388 17407 8.54e-05 0.31 TATTAATAAAATTTTGAATA
RL4253_Rhodobacterales_Rhizobiales strain + 17897 17916 8.55e-05 0.22 GATTTAAAAAATCAGAAAAC
RBPS06636_Burkholderia strain + 8917 8936 8.55e-05 0.433 AATTGAAACGATTATGGATA
ArcA_Gammaproteobacteria strain - 19104 19118 8.56e-05 0.322 TTTCATTTTTTTAAA
Rfer_1112_Burkholderiales strain + 16550 16569 8.56e-05 0.375 ATAAAGAAGGGCTTGCAATA
BCAM1716_Burkholderiales_Actinomycetales strain + 16562 16581 8.56e-05 1 TTGCAATATCGATTAAGGAC
SMb21598_Rhizobiales strain + 9700 9719 8.57e-05 1 AGCGGAAAAGGTTCATGGTC
TnrA_Bacilli strain - 19030 19046 8.58e-05 0.171 TCTTATATTTTTAAACC
LJ0739_Lactobacillus strain + 17529 17548 8.59e-05 0.292 GAAATGAAACGATTATAGAT
YvdE_Bacilli strain - 11842 11861 8.61e-05 0.39 TGTTTTTGCCGTTTACAACA
ModE_Gammaproteobacteria strain + 2463 2488 8.64e-05 0.15 ATGTAATGAATTTAAGTATATAATTC
ModE_Gammaproteobacteria strain + 17380 17405 8.66e-05 0.15 AAAAAATATATTCAAAATTTTATTAA
RSc1790_Burkholderiales_Pseudomonadales strain + 3965 3984 8.67e-05 0.853 CGATGGAAAACATTCCAAGC
KdgR_Bacillaceae strain - 16562 16581 8.69e-05 0.525 GTCCTTAATCGATATTGCAA
ModE_Gammaproteobacteria strain + 17184 17209 8.7e-05 0.15 ATTATATATAAACGTATAGATATAAA
BH1250_Bacillaceae_Lactobacillaceae strain + 9402 9421 8.7e-05 0.436 CCATTGGAACTATTCCACAT
XylR_Gammaproteobacteria strain + 18595 18632 8.71e-05 0.0652 TAGAAAATATAGAAGATATAAAAAAAAATATAAAGTTA
Fnr_Gammaproteobacteria strain + 10629 10642 8.74e-05 0.401 TTGTTCGAAAACAT
ABC0302_Bacilliales strain + 5438 5457 8.75e-05 0.311 ACTGCAAAAGGTTGTTATAG
RbsR_Bacilli strain + 10407 10426 8.77e-05 0.505 TGGGTCAAATGCTTTATTTA
ArcA_Gammaproteobacteria strain + 1302 1316 8.78e-05 0.322 TTAAAGATATTAAAC
RPU04121_Methylophilales_Pseudomonadales strain + 13271 13290 8.79e-05 0.597 GGATGCTGCCGGTAATATAA
CelR_Actinomycetales strain + 13856 13875 8.79e-05 1 CTCTGGAAGCAATTCCAATA
SAV7156_Actinomycetales strain + 9403 9422 8.8e-05 1 CATTGGAACTATTCCACATC
SMb20537_Rhizobiales strain - 549 568 8.82e-05 0.315 TTTCTCAAAATTTTCTATAC
RKP05499_Bacteria strain + 712 731 8.83e-05 0.253 ATATTTAACAGATAAAAATC
NagC_Gammaproteobacteria strain - 17831 17853 8.84e-05 0.0908 TCTTTTTTGTTCTTCAAATCTTC
NagC_Gammaproteobacteria strain + 17367 17389 8.84e-05 0.0908 ATTATTATATGGGAAAAAATATA
NtdR_Bacillales strain + 4145 4164 8.85e-05 0.615 TTATTGTATGGAATATAAGA
SMb20667_Rhizobiales strain - 2809 2828 8.89e-05 0.624 AATTGTAAGCAATGCAACAA
GntR_Alphaproteobacteria_Alteromonadales strain + 15013 15032 8.9e-05 1 AAATGAAAGAGGTAACAAAT
RL4253_Rhodobacterales_Rhizobiales strain - 8986 9005 8.91e-05 0.22 ATTTTATAACGCCACCTTTG
AlgR_Rhodobacterales_Rhizobiales strain - 19813 19832 8.91e-05 1 TTTAGAAATCGGATTTGCCA
ScrR_Bacilli strain - 6895 6914 8.92e-05 0.734 TTTGCAAACGGTATTGCATA
SMb20667_Rhizobiales strain - 7942 7961 8.92e-05 0.624 ATTTGGCAGGTATACTAAAA
ECA2487_Gammaproteobacteria strain + 17907 17926 8.96e-05 0.398 ATCAGAAAACACTTTTAGAG
LldR_Enterobacteriales strain - 15156 15176 8.96e-05 0.436 AAAATGGATAATACATATTAT
SMb21272_Rhizobiales strain + 3070 3089 8.98e-05 0.465 ATGGTTTAACGTATAATACG
YvdE_Bacilli strain - 18670 18689 9.01e-05 0.39 TTTTGTCACTGCTAAAAGCA
FixK_FnrN_Rhizobiales strain + 20328 20341 9.07e-05 1 TTATCATACAGCAA
NagC_Gammaproteobacteria strain + 17334 17356 9.09e-05 0.0908 ATCATCTTTTATATAGAATATAA
RegR_Streptococcus strain + 801 820 9.1e-05 0.565 TTGATAAAAATGTTTACACA
PtxS_Burkholderiales_Pseudomonadales strain - 10711 10730 9.11e-05 0.396 AATAGGTACCGGGTTTAGAT
ECA3649_Erwinia strain - 13986 14005 9.11e-05 0.184 GTTGTTGCTATTCCATACCC
SMb20537_Rhizobiales strain + 14431 14450 9.12e-05 0.315 AGAAAGCAAACTGCCAAGGA
RegR_Streptococcus strain - 12763 12782 9.12e-05 0.565 TAATAATATAAATCTTCTTA
MalR_Streptococcus_pneumoniae strain - 3566 3585 9.14e-05 0.597 ATGACAAAAGCTTTTCTTTA
MalR_Streptococcus_pneumoniae strain - 11504 11523 9.16e-05 0.597 ATTCCCCAAGCTTTGCTTTT
Atu3062_Alphaproteobacteria_Pseudomonas strain - 10266 10285 9.16e-05 1 CTCATATGCCGCTTTAGTAG
MsmR_Lactobacillales strain - 8508 8527 9.17e-05 0.176 AGATACCACCGGTTCAAATA
GntR_Alphaproteobacteria_Alteromonadales strain + 14152 14171 9.18e-05 1 ATTTATTTGCTCTATCAATG
RbsR_Streptomycetaceae_Rubrobacteraceae strain - 13496 13515 9.19e-05 0.86 CCTTGTTATAATTACCAATA
MalI_Enterobacteriales strain + 18232 18251 9.2e-05 0.352 AAGAGGAGATGTTTTAAAAG
XylR_Rhodobacteriales_Rhizobiales strain + 1887 1909 9.21e-05 0.336 ATCTATTGGCTGGTTTAAAAAAT
YvdE_Bacilli strain + 2544 2563 9.24e-05 0.39 TTTAATTATTGCTAACTAAA
NrdR_Proteobacteria strain - 19265 19280 9.27e-05 1 CCCCTCCATCTTATAT
SCO2753_Actinomycetales strain + 12504 12523 9.29e-05 1 CATGGAAAACATTTGCCCAA
SMA2527_Enterobacteriales_Oceanospirillales strain + 907 926 9.3e-05 0.55 AAATGACAGAATAAAAAATA
MalR_Clostridiales_Thermoanaerobacteriales strain + 10635 10654 9.3e-05 0.348 GAAAACATACCCTTTCACAA
Rfer_1112_Burkholderiales strain + 2563 2582 9.31e-05 0.375 AATTGGAATTACTTAAAAAA
SMb20537_Rhizobiales strain + 4050 4069 9.31e-05 0.315 TTTGTCAGTATATGCAATAA
RL4253_Rhodobacterales_Rhizobiales strain + 3506 3525 9.36e-05 0.22 AATTGTAAATGCTAAAAATG
ECA3649_Erwinia strain + 19809 19828 9.37e-05 0.184 AATATGGCAAATCCGATTTC
MalR_Pediococcus_Leuconostoc strain + 18709 18728 9.41e-05 0.949 TAAAAGAAGCAGTTTCATTT
Crp_Gammaproteobacteria strain + 16708 16729 9.44e-05 1 TTATTAGATGCATATCAAAAAA
SssR_Proteobacteria strain + 439 454 9.47e-05 1 TTTAACAGGACGTCAA
ECA3649_Erwinia strain - 20398 20417 9.48e-05 0.184 AATTTTCTAATTCCGTCCTT
XylR_Gammaproteobacteria strain - 2497 2534 9.49e-05 0.0693 ATAATTATAAGCGATATATTTATTAAATTATATTTTTA
LJ0739_Lactobacillus strain - 5139 5158 9.53e-05 0.292 CATTTTAAAAGTGTAGACTT
SMb21598_Rhizobiales strain - 91 110 9.53e-05 1 TTGAGTTAACATTTCCGGGT
PdhR_Gammaproteobacteria strain + 12713 12733 9.54e-05 0.433 GATAGTGCTATAACTAATGCA
SO3516_Alteromonadales strain - 16575 16594 9.54e-05 1 CTCTTATATCCTTGTCCTTA
ECA2487_Gammaproteobacteria strain - 8836 8855 9.56e-05 0.398 TACGGGCAACACTTTCCAAT
LMO0535_Enterococcaceae_Listeriaceae strain + 2336 2355 9.57e-05 0.425 ATAAGTAAAGTATTGCATCT
SMc04401_Alpha_Gamma strain - 2600 2619 9.58e-05 0.687 TTCTTGTAACGTTCTGTTTC
Rfer_1112_Burkholderiales strain + 6626 6645 9.58e-05 0.375 CAATGGAATCGCTTAATAAA
NadR_Enterobacteriales strain + 19717 19734 9.58e-05 0.239 TTACTACTATATTAACTA
SMA2527_Enterobacteriales_Oceanospirillales strain - 18024 18043 9.58e-05 0.55 AGAAGTCAAATTATACATTT
LMO0535_Enterococcaceae_Listeriaceae strain - 3965 3984 9.63e-05 0.425 GCTTGGAATGTTTTCCATCG
LacI_Yersinia strain - 13911 13931 9.64e-05 0.255 TGATTTGGTACCTTCAGAAGA
bll3974_Rhizobiales strain - 1494 1513 9.65e-05 0.317 GAATGACGCCGATATTAATA
MtaR_Streptococcaceae strain - 18277 18293 9.67e-05 0.793 TATTAATAATAGCAATA
IscR_Beta_Gamma strain + 18209 18233 9.68e-05 0.236 ATAGATGGATATGATAATCAATTAA
MalR_Staphylococcus strain + 6547 6566 9.69e-05 0.598 CTTTGCAAACAAATGCGGTA
BCAS0099_Burkholderiales_Rhodobacterales strain - 6626 6645 9.7e-05 1 TTTATTAAGCGATTCCATTG
XCC3356_Alpha_Gamma strain + 9230 9249 9.7e-05 0.594 GTTTGCAAAATACTGCATGA
VCA0673_Vibrionales strain - 13042 13061 9.7e-05 0.556 TAATGGTTTAGCACAAATTA
ArcA_Gammaproteobacteria strain - 18338 18352 9.72e-05 0.322 TAAAATTAAATTTAC
NagQ_a_b_g_Proteobacteria strain - 14841 14858 9.73e-05 0.354 TGATATTGTATTGTTTCT
Crp_Gammaproteobacteria strain - 16708 16729 9.73e-05 1 TTTTTTGATATGCATCTAATAA
NrdR_Proteobacteria strain + 16784 16799 9.74e-05 1 CGCCAACCTCTAGTGT
XylR_Gammaproteobacteria strain + 18168 18205 9.74e-05 0.0694 ATTATAAATTAATAAAAGAAGGAGAAAAAATAAAAGTT
SMb21706_Rhizobiales strain + 14996 15015 9.75e-05 0.27 ATTAAAAAAGGTTATACAAA
VP2396_Vibrio_Yersinia strain + 5800 5819 9.76e-05 0.128 AATTTAAAAAATAAAAATTA
mlr8213_Mesorhizobium_Streptomyces strain - 12510 12529 9.78e-05 1 AGTATTTTGGGCAAATGTTT
MalR_Clostridium_perfringens strain + 6476 6495 9.8e-05 0.389 AAAAGGTATCGAAATCAAGG
VCA0673_Vibrionales strain - 9343 9362 9.8e-05 0.556 TACCGGGTAACCATTCAAGA
FruR_Gammaproteobacteria strain - 4619 4634 9.81e-05 0.671 GCTAAAATGATTATAG
SMb20537_Rhizobiales strain + 111 130 9.82e-05 0.315 GTAAAGGAAATTTACCTGAA
VP2396_Vibrio_Yersinia strain + 19462 19481 9.83e-05 0.128 AAAATATATGCTTGGAATTA
MsmR_Lactobacillales strain + 20406 20425 9.83e-05 0.178 AATTAGAAAATTTAAAAAAG
SMb21272_Rhizobiales strain + 20595 20614 9.83e-05 0.465 ATGGTTAATCATATACTAAG
ECA2487_Gammaproteobacteria strain + 7867 7886 9.84e-05 0.398 AAAGGCAAAAGATTTAAATA
SMb21372_Rhizobiales_Rhodobacterales strain - 8735 8754 9.85e-05 1 TTCTTGACGGGTTTAAGCTG
RbsR_Actinomycetales strain + 14231 14250 9.85e-05 0.869 TTAAGTAAAACATTACATTG
XCC2464_Alteromonadales_Xanthomonadales_Sphingomonadales strain + 12054 12073 9.86e-05 1 TTTTAAATACCGATGCGGCA
LMO1727_Enterococcaceae_Listeriaceae strain + 17586 17605 9.87e-05 0.599 GCGGAGAAAGGGTGCCAAAA
XylR_Bacillus_Clostridium_group strain + 537 559 9.9e-05 0.177 ATAAGGTTGTTGGTATAGAAAAT
SMc04401_Alpha_Gamma strain - 20222 20241 9.9e-05 0.687 TCATTGTAACTTTGCAATTT
YvdE_Bacilli strain - 12486 12505 9.91e-05 0.39 TGTTGTTCCTGTTAAAGAGC
ScrR_Bacilli strain + 12180 12199 9.93e-05 0.734 AATGGCAAACACCTACTATT
lmo0734_Listeria_Symbiobacterium strain - 15214 15233 9.94e-05 0.452 TATTAACAACGTTTAATATT
VP2396_Vibrio_Yersinia strain - 18419 18438 9.94e-05 0.128 TTTATATTATTTAAAATAAA
bll3974_Rhizobiales strain + 8968 8987 9.96e-05 0.317 TATTGACGAGATTGTCAGCA
DEBUGGING INFORMATION

Command line: 

fimo --oc . --verbosity 1 --thresh 1.0E-4 regtransbase.meme 26.fasta

Settings: 


  

    output_directory = .
    MEME file name = regtransbase.meme
    sequence file name = 26.fasta
  
  

    background file name = --nrdb--
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = false
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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