#!/bin/bash
# Makes list file
cat > 6pgd_list.txt << 'LISTEOF'
sw:6pgd_ecoli
sw:6pgd_bacsu
sw:6pgd_human
sw:6pgd_drome
sw:6pgd_haein
sw:6pgd_trybb
sw:6pgd1_yeast
LISTEOF

# get fasta
seqret @6pgd_list.txt 6pgd_7.fasta

# mult alignment
muscle -align 6pgd_7.fasta -output 6pgd_7_aligned.fasta

echo "Done! 6pgd_7_aligned.fasta is created."