#!/bin/bash
needle sw:6pgd_ecoli sw:6pgd_bacsu 6pgd.needle -auto
needle sw:6pgl_ecoli sw:6pgl_bacsu 6pgl.needle -auto
needle sw:abrb_ecoli sw:abrb_bacsu abrb.needle -auto
echo "Done! Files: 6pgd.needle, 6pgl.needle, abrb.needle"