RID: Y75BA76F014 Job Title:>RNA-binding phosphoprotein p12 (pp12) (id="PRO_0000040838") Feline leukemia virus Program: BLASTP Query: unnamed protein product ID: lcl|Query_12018305(amino acid) Length: 70 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Gardner-Arns... NA 11774 133 133 100% 1e-38 100.00 348 P03337.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Gardner-Arns... NA 11774 134 134 100% 2e-38 100.00 425 P0DOH1.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline leuke... NA 11768 134 134 100% 5e-38 100.00 506 P10262.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Feline leuke... NA 11768 135 135 100% 6e-38 100.00 1712 P10273.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11777 129 129 100% 2e-37 97.14 340 P04322.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11777 130 130 100% 3e-37 97.14 414 P0DP83.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline leuke... NA 11768 128 128 100% 2e-35 95.71 580 P0DOH3.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Feline sarco... NA 11778 71.2 71.2 100% 3e-15 94.29 536 P0DOH2.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Feline sarco... NA 11778 70.9 70.9 100% 4e-15 94.29 459 P03340.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Snyder-Theil... NA 11780 63.9 63.9 74% 9e-13 96.15 297 P03338.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Snyder-Theil... NA 11780 63.9 63.9 74% 1e-12 96.15 371 P0DOG9.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... HoMuLV murin... NA 11799 48.5 48.5 90% 3e-07 48.05 540 P21435.3 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 373193 47.0 47.0 90% 9e-07 48.00 1733 A1Z651.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356664 47.0 47.0 90% 1e-06 48.00 1733 Q2F7J0.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356664 46.2 46.2 90% 2e-06 48.00 536 Q2F7I9.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 373193 46.2 46.2 90% 2e-06 48.00 536 Q27ID9.1 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Xenotropic M... NA 356663 46.2 46.2 90% 2e-06 47.37 1733 Q2F7J3.1 RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Co... Xenotropic M... NA 356663 45.8 45.8 90% 3e-06 48.65 536 Q2F7J2.1 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... AKR (endogen... NA 11791 44.7 44.7 86% 8e-06 50.70 1734 P03356.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... AKR (endogen... NA 11791 43.9 43.9 86% 1e-05 50.70 625 P0DOG8.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... AKR (endogen... NA 11791 43.5 43.5 86% 2e-05 50.70 537 P03336.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Finkel-Biski... NA 353765 42.4 42.4 86% 4e-05 49.30 310 P29175.3 RecName: Full=Gag-pol polyprotein; Contains: RecName:... Murine leuke... NA 31687 42.4 42.4 86% 5e-05 47.14 1734 Q7SVK7.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Radiation mu... NA 11787 42.0 42.0 86% 6e-05 47.14 1734 P11227.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Radiation mu... NA 11787 42.0 42.0 86% 7e-05 47.14 537 P11269.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31687 42.0 42.0 86% 7e-05 47.14 537 P29167.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11796 41.2 41.2 91% 1e-04 44.74 1739 P26810.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11796 40.8 40.8 91% 2e-04 44.74 627 P0DOH0.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11796 40.4 40.4 91% 2e-04 44.74 539 P26807.3 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11798 37.4 37.4 91% 0.003 48.68 1738 P26808.2 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11798 37.0 37.0 91% 0.004 48.68 626 P0DOH6.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11798 37.0 37.0 91% 0.004 48.68 538 P26805.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Moloney muri... NA 882209 36.2 36.2 84% 0.008 47.83 626 Q8UN02.2 RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contain... Cas-Br-E mur... NA 11792 35.8 35.8 84% 0.010 45.45 1733 P08361.2 RecName: Full=Gag-Pol polyprotein; Contains: RecName:... Friend murin... NA 11797 35.8 35.8 91% 0.011 47.37 1738 P26809.2 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Murine leuke... NA 31688 35.4 35.4 90% 0.013 46.58 536 P29168.3 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Cas-Br-E mur... NA 11792 35.4 35.4 84% 0.015 42.86 624 P0DOH4.1 RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell... Friend murin... NA 11797 35.0 35.0 91% 0.016 47.37 626 P0DOH5.1 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Cas-Br-E mur... NA 11792 35.0 35.0 84% 0.017 42.86 536 P27460.3 RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein;... Friend murin... NA 11797 35.0 35.0 91% 0.018 47.37 538 P26806.3 Alignments: >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Gardner-Arnstein feline sarcoma virus] Sequence ID: P03337.2 Length: 348 Range 1: 128 to 197 Score:133 bits(334), Expect:1e-38, Method:Compositional matrix adjust., Identities:70/70(100%), Positives:70/70(100%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR Sbjct 128 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 187 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 188 ENPAEESQAL 197 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Gardner-Arnstein feline sarcoma virus] Sequence ID: P0DOH1.1 Length: 425 Range 1: 205 to 274 Score:134 bits(336), Expect:2e-38, Method:Compositional matrix adjust., Identities:70/70(100%), Positives:70/70(100%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR Sbjct 205 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 264 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 265 ENPAEESQAL 274 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Feline leukemia virus] Sequence ID: P10262.3 Length: 506 Range 1: 128 to 197 Score:134 bits(337), Expect:5e-38, Method:Compositional matrix adjust., Identities:70/70(100%), Positives:70/70(100%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR Sbjct 128 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 187 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 188 ENPAEESQAL 197 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Feline leukemia virus] Sequence ID: P10273.2 Length: 1712 Range 1: 128 to 197 Score:135 bits(341), Expect:6e-38, Method:Compositional matrix adjust., Identities:70/70(100%), Positives:70/70(100%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR Sbjct 128 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 187 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 188 ENPAEESQAL 197 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P04322.2 Length: 340 Range 1: 128 to 197 Score:129 bits(325), Expect:2e-37, Method:Compositional matrix adjust., Identities:68/70(97%), Positives:69/70(98%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PVLPK+DPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGP PSGPRTPTASPIASRLRERR Sbjct 128 PVLPKTDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPLPSGPRTPTASPIASRLRERR 187 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 188 ENPAEESQAL 197 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)] Sequence ID: P0DP83.1 Length: 414 Range 1: 202 to 271 Score:130 bits(327), Expect:3e-37, Method:Compositional matrix adjust., Identities:68/70(97%), Positives:69/70(98%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PVLPK+DPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGP PSGPRTPTASPIASRLRERR Sbjct 202 PVLPKTDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPLPSGPRTPTASPIASRLRERR 261 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 262 ENPAEESQAL 271 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline leukemia virus] Sequence ID: P0DOH3.1 Length: 580 Range 1: 202 to 271 Score:128 bits(321), Expect:2e-35, Method:Compositional matrix adjust., Identities:67/70(96%), Positives:68/70(97%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PV+PK DPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTP ASPIASRLRERR Sbjct 202 PVVPKPDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPAASPIASRLRERR 261 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 262 ENPAEESQAL 271 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P0DOH2.1 Length: 536 Range 1: 205 to 274 Score:71.2 bits(173), Expect:3e-15, Method:Compositional matrix adjust., Identities:66/70(94%), Positives:68/70(97%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PVLPK++PPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSG RTP ASPIASRLRERR Sbjct 205 PVLPKTNPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGLRTPAASPIASRLRERR 264 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 265 ENPAEESQAL 274 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Feline sarcoma virus (STRAIN MCDONOUGH)] Sequence ID: P03340.2 Length: 459 Range 1: 128 to 197 Score:70.9 bits(172), Expect:4e-15, Method:Compositional matrix adjust., Identities:66/70(94%), Positives:68/70(97%), Gaps:0/70(0%) Query 1 PVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERR 60 PVLPK++PPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSG RTP ASPIASRLRERR Sbjct 128 PVLPKTNPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGLRTPAASPIASRLRERR 187 Query 61 ENPAEESQAL 70 ENPAEESQAL Sbjct 188 ENPAEESQAL 197 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Snyder-Theilen feline sarcoma virus] Sequence ID: P03338.2 Length: 297 Range 1: 146 to 197 Score:63.9 bits(154), Expect:9e-13, Method:Compositional matrix adjust., Identities:50/52(96%), Positives:50/52(96%), Gaps:0/52(0%) Query 19 SSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERRENPAEESQAL 70 SSPLIDLLTEEPPPYPGGHGPPPSGPRTP ASPI SRLRERRENPAEESQAL Sbjct 146 SSPLIDLLTEEPPPYPGGHGPPPSGPRTPAASPIVSRLRERRENPAEESQAL 197 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Snyder-Theilen feline sarcoma virus] Sequence ID: P0DOG9.1 Length: 371 Range 1: 220 to 271 Score:63.9 bits(154), Expect:1e-12, Method:Compositional matrix adjust., Identities:50/52(96%), Positives:50/52(96%), Gaps:0/52(0%) Query 19 SSPLIDLLTEEPPPYPGGHGPPPSGPRTPTASPIASRLRERRENPAEESQAL 70 SSPLIDLLTEEPPPYPGGHGPPPSGPRTP ASPI SRLRERRENPAEESQAL Sbjct 220 SSPLIDLLTEEPPPYPGGHGPPPSGPRTPAASPIVSRLRERRENPAEESQAL 271 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [HoMuLV murine leukemia virus] Sequence ID: P21435.3 Length: 540 Range 1: 136 to 211 Score:48.5 bits(114), Expect:3e-07, Method:Compositional matrix adjust., Identities:37/77(48%), Positives:44/77(57%), Gaps:15/77(19%) Query 5 KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSG---------PRTPTA-----S 50 KS PK VL D PLIDLL+++PPPY G PP+G PR P S Sbjct 136 KSPSPKTQVLSDD-GGPLIDLLSDDPPPYRGPENQPPAGRPTTTMQEMPRLPLKVPQEPS 194 Query 51 PIASRLRERRENPAEES 67 P+ASRLR RRE+PA +S Sbjct 195 PMASRLRGRREHPAADS 211 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP62] Sequence ID: A1Z651.1 Length: 1733 Range 1: 137 to 207 Score:47.0 bits(110), Expect:9e-07, Method:Compositional matrix adjust., Identities:36/75(48%), Positives:40/75(53%), Gaps:16/75(21%) Query 5 KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTA------------SPI 52 KS PPKP VLP D PLIDLLTE+PPPY P S R SP+ Sbjct 137 KSKPPKPQVLP-DSGGPLIDLLTEDPPPYG---AQPSSSARENNEEEAATTSEVSPPSPM 192 Query 53 ASRLRERRENPAEES 67 SRLR RR+ PA +S Sbjct 193 VSRLRGRRDPPAADS 207 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7J0.1 Length: 1733 Range 1: 137 to 207 Score:47.0 bits(110), Expect:1e-06, Method:Compositional matrix adjust., Identities:36/75(48%), Positives:40/75(53%), Gaps:16/75(21%) Query 5 KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTA------------SPI 52 KS PPKP VLP D PLIDLLTE+PPPY P S R SP+ Sbjct 137 KSKPPKPQVLP-DSGGPLIDLLTEDPPPYG---AQPSSSARENNEEEAATTSEVSPPSPM 192 Query 53 ASRLRERRENPAEES 67 SRLR RR+ PA +S Sbjct 193 VSRLRGRRDPPAADS 207 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP42] Sequence ID: Q2F7I9.1 Length: 536 Range 1: 137 to 207 Score:46.2 bits(108), Expect:2e-06, Method:Compositional matrix adjust., Identities:36/75(48%), Positives:40/75(53%), Gaps:16/75(21%) Query 5 KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTA------------SPI 52 KS PPKP VLP D PLIDLLTE+PPPY P S R SP+ Sbjct 137 KSKPPKPQVLP-DSGGPLIDLLTEDPPPY---GAQPSSSARENNEEEAATTSEVSPPSPM 192 Query 53 ASRLRERRENPAEES 67 SRLR RR+ PA +S Sbjct 193 VSRLRGRRDPPAADS 207 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-gag [Xenotropic MuLV-related virus VP62] Sequence ID: Q27ID9.1 Length: 536 Range 1: 137 to 207 Score:46.2 bits(108), Expect:2e-06, Method:Compositional matrix adjust., Identities:36/75(48%), Positives:40/75(53%), Gaps:16/75(21%) Query 5 KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTA------------SPI 52 KS PPKP VLP D PLIDLLTE+PPPY P S R SP+ Sbjct 137 KSKPPKPQVLP-DSGGPLIDLLTEDPPPY---GAQPSSSARENNEEEAATTSEVSPPSPM 192 Query 53 ASRLRERRENPAEES 67 SRLR RR+ PA +S Sbjct 193 VSRLRGRRDPPAADS 207 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10; Short=NC-pol; Contains: RecName: Full=Protease p14; Short=PR; Contains: RecName: Full=Reverse transcriptase/ribonuclease H p80; Short=RT; Contains: RecName: Full=Integrase p46; Short=IN [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J3.1 Length: 1733 Range 1: 137 to 207 Score:46.2 bits(108), Expect:2e-06, Method:Compositional matrix adjust., Identities:36/76(47%), Positives:40/76(52%), Gaps:18/76(23%) Query 5 KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTA-------------SP 51 KS PPKP VLP D PLIDLLTE+PPPY G PS SP Sbjct 137 KSKPPKPQVLP-DSGGPLIDLLTEDPPPY----GVQPSSSARENNEEEAATTSEVSPPSP 191 Query 52 IASRLRERRENPAEES 67 + SRLR RR+ PA +S Sbjct 192 MVSRLRGRRDPPAADS 207 >RecName: Full=Gag polyprotein; Short=Pr65gag; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Xenotropic MuLV-related virus VP35] Sequence ID: Q2F7J2.1 Length: 536 Range 1: 137 to 207 Score:45.8 bits(107), Expect:3e-06, Method:Compositional matrix adjust., Identities:36/74(49%), Positives:40/74(54%), Gaps:14/74(18%) Query 5 KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPTA-----------SPIA 53 KS PPKP VLP D PLIDLLTE+PPPY G P S SP+ Sbjct 137 KSKPPKPQVLP-DSGGPLIDLLTEDPPPY--GVQPSSSARENNEEEAATTSEVSPPSPMV 193 Query 54 SRLRERRENPAEES 67 SRLR RR+ PA +S Sbjct 194 SRLRGRRDPPAADS 207 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [AKR (endogenous) murine leukemia virus] Sequence ID: P03356.3 Length: 1734 Range 1: 140 to 208 Score:44.7 bits(104), Expect:8e-06, Method:Compositional matrix adjust., Identities:36/71(51%), Positives:42/71(59%), Gaps:13/71(18%) Query 8 PPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPS---GPR---TPTA-----SPIASRL 56 P KP VL D PLIDLL+E+PPPY GG G S G R T T+ SPI SRL Sbjct 140 PSKPQVLS-DNGGPLIDLLSEDPPPY-GGQGLSSSDGDGDREEATSTSEIPAPSPIVSRL 197 Query 57 RERRENPAEES 67 R +R+ PA +S Sbjct 198 RGKRDPPAADS 208 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [AKR (endogenous) murine leukemia virus] Sequence ID: P0DOG8.1 Length: 625 Range 1: 228 to 296 Score:43.9 bits(102), Expect:1e-05, Method:Compositional matrix adjust., Identities:36/71(51%), Positives:42/71(59%), Gaps:13/71(18%) Query 8 PPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPS---GPR---TPTA-----SPIASRL 56 P KP VL D PLIDLL+E+PPPY GG G S G R T T+ SPI SRL Sbjct 228 PSKPQVLS-DNGGPLIDLLSEDPPPY-GGQGLSSSDGDGDREEATSTSEIPAPSPIVSRL 285 Query 57 RERRENPAEES 67 R +R+ PA +S Sbjct 286 RGKRDPPAADS 296 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [AKR (endogenous) murine leukemia virus] Sequence ID: P03336.3 Length: 537 Range 1: 140 to 208 Score:43.5 bits(101), Expect:2e-05, Method:Compositional matrix adjust., Identities:36/71(51%), Positives:42/71(59%), Gaps:13/71(18%) Query 8 PPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPS---GPR---TPTA-----SPIASRL 56 P KP VL D PLIDLL+E+PPPY GG G S G R T T+ SPI SRL Sbjct 140 PSKPQVLS-DNGGPLIDLLSEDPPPY-GGQGLSSSDGDGDREEATSTSEIPAPSPIVSRL 197 Query 57 RERRENPAEES 67 R +R+ PA +S Sbjct 198 RGKRDPPAADS 208 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA [Finkel-Biskis-Jinkins murine sarcoma virus] Sequence ID: P29175.3 Length: 310 Range 1: 140 to 208 Score:42.4 bits(98), Expect:4e-05, Method:Compositional matrix adjust., Identities:35/71(49%), Positives:40/71(56%), Gaps:13/71(18%) Query 8 PPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPS---GPR--------TPTASPIASRL 56 P KP VL D PLIDLLTE+PPPY G GP S G R P SP+ SRL Sbjct 140 PSKPQVLSDD-GGPLIDLLTEDPPPY-GEQGPSSSDGDGDREEATSTSEIPAPSPMVSRL 197 Query 57 RERRENPAEES 67 R +R+ PA +S Sbjct 198 RGKRDPPAADS 208 >RecName: Full=Gag-pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Murine leukemia virus (strain BM5 ECO)] Sequence ID: Q7SVK7.2 Length: 1734 Range 1: 140 to 208 Score:42.4 bits(98), Expect:5e-05, Method:Compositional matrix adjust., Identities:33/70(47%), Positives:38/70(54%), Gaps:11/70(15%) Query 8 PPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHG---PPPSGPRTPTASPIASRLR 57 P KP VL D PLIDLLTE+PPPY P G G S P SP+ SRLR Sbjct 140 PSKPQVLSDD-GGPLIDLLTEDPPPYGEQGPSSPDGDGDREEATSTSEIPAPSPMVSRLR 198 Query 58 ERRENPAEES 67 +R+ PA +S Sbjct 199 GKRDPPAADS 208 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Radiation murine leukemia virus] Sequence ID: P11227.2 Length: 1734 Range 1: 140 to 208 Score:42.0 bits(97), Expect:6e-05, Method:Compositional matrix adjust., Identities:33/70(47%), Positives:38/70(54%), Gaps:11/70(15%) Query 8 PPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRT---PTASPIASRLR 57 P KP VL D PLIDLLTE+PPPY P G G T P SP+ SRLR Sbjct 140 PSKPQVLS-DNGGPLIDLLTEDPPPYGEQGPSSPDGDGDREEATYTSEIPAPSPMVSRLR 198 Query 58 ERRENPAEES 67 +R+ PA +S Sbjct 199 GKRDPPAADS 208 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Radiation murine leukemia virus] Sequence ID: P11269.3 Length: 537 Range 1: 140 to 208 Score:42.0 bits(97), Expect:7e-05, Method:Compositional matrix adjust., Identities:33/70(47%), Positives:38/70(54%), Gaps:11/70(15%) Query 8 PPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRT---PTASPIASRLR 57 P KP VL D PLIDLLTE+PPPY P G G T P SP+ SRLR Sbjct 140 PSKPQVLS-DNGGPLIDLLTEDPPPYGEQGPSSPDGDGDREEATYTSEIPAPSPMVSRLR 198 Query 58 ERRENPAEES 67 +R+ PA +S Sbjct 199 GKRDPPAADS 208 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Murine leukemia virus (strain BM5 ECO)] Sequence ID: P29167.3 Length: 537 Range 1: 140 to 208 Score:42.0 bits(97), Expect:7e-05, Method:Compositional matrix adjust., Identities:33/70(47%), Positives:38/70(54%), Gaps:11/70(15%) Query 8 PPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRT---PTASPIASRLR 57 P KP VL D PLIDLLTE+PPPY P G G T P SP+ SRLR Sbjct 140 PSKPQVLSDD-GGPLIDLLTEDPPPYGEQGPSSPDGDGDREEATSTSEIPAPSPMVSRLR 198 Query 58 ERRENPAEES 67 +R+ PA +S Sbjct 199 GKRDPPAADS 208 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26810.2 Length: 1739 Range 1: 138 to 210 Score:41.2 bits(95), Expect:1e-04, Method:Compositional matrix adjust., Identities:34/76(45%), Positives:40/76(52%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY------------PGGHGPPPSGPRTPTASP 51 P + P+P VLP D PLIDLLTE+PPPY G P G P +SP Sbjct 138 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPSSSDGNGGSGEVAPTEGA--PDSSP 194 Query 52 IASRLRERRENPAEES 67 + SRLR RRE P +S Sbjct 195 MVSRLRGRREPPVADS 210 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P0DOH0.1 Length: 627 Range 1: 226 to 298 Score:40.8 bits(94), Expect:2e-04, Method:Compositional matrix adjust., Identities:34/76(45%), Positives:40/76(52%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY------------PGGHGPPPSGPRTPTASP 51 P + P+P VLP D PLIDLLTE+PPPY G P G P +SP Sbjct 226 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPSSSDGNGGSGEVAPTEG--APDSSP 282 Query 52 IASRLRERRENPAEES 67 + SRLR RRE P +S Sbjct 283 MVSRLRGRREPPVADS 298 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE 57)] Sequence ID: P26807.3 Length: 539 Range 1: 138 to 210 Score:40.4 bits(93), Expect:2e-04, Method:Compositional matrix adjust., Identities:34/76(45%), Positives:40/76(52%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY------------PGGHGPPPSGPRTPTASP 51 P + P+P VLP D PLIDLLTE+PPPY G P G P +SP Sbjct 138 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPSSSDGNGGSGEVAPTEG--APDSSP 194 Query 52 IASRLRERRENPAEES 67 + SRLR RRE P +S Sbjct 195 MVSRLRGRREPPVADS 210 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26808.2 Length: 1738 Range 1: 137 to 209 Score:37.4 bits(85), Expect:0.003, Method:Compositional matrix adjust., Identities:37/76(49%), Positives:43/76(56%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRTPT-----ASP 51 P + P+P VLP D PLIDLLTE+PPPY P G G SG PT +SP Sbjct 137 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPPSPDGKG--DSGEVAPTEGAPDSSP 193 Query 52 IASRLRERRENPAEES 67 + SRLR RRE P +S Sbjct 194 MVSRLRGRREPPVADS 209 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P0DOH6.1 Length: 626 Range 1: 225 to 297 Score:37.0 bits(84), Expect:0.004, Method:Compositional matrix adjust., Identities:37/76(49%), Positives:43/76(56%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRTPT-----ASP 51 P + P+P VLP D PLIDLLTE+PPPY P G G SG PT +SP Sbjct 225 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPPSPDGKG--DSGEVAPTEGAPDSSP 281 Query 52 IASRLRERRENPAEES 67 + SRLR RRE P +S Sbjct 282 MVSRLRGRREPPVADS 297 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE PVC-211)] Sequence ID: P26805.3 Length: 538 Range 1: 137 to 209 Score:37.0 bits(84), Expect:0.004, Method:Compositional matrix adjust., Identities:37/76(49%), Positives:43/76(56%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRTPT-----ASP 51 P + P+P VLP D PLIDLLTE+PPPY P G G SG PT +SP Sbjct 137 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPPSPDGKG--DSGEVAPTEGAPDSSP 193 Query 52 IASRLRERRENPAEES 67 + SRLR RRE P +S Sbjct 194 MVSRLRGRREPPVADS 209 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80; Contains: RecName: Full=Nextended-MA-p12; Contains: RecName: Full=CA-NC [Moloney murine leukemia virus neuropathogenic variant ts1-92b] Sequence ID: Q8UN02.2 Length: 626 Range 1: 230 to 297 Score:36.2 bits(82), Expect:0.008, Method:Compositional matrix adjust., Identities:33/69(48%), Positives:35/69(50%), Gaps:11/69(15%) Query 9 PKPPVLPPDPSSPLIDLLTE-----EPPPYPGGHGPPPSGPRTPTA-----SPIASRLRE 58 PKP VL D PLIDLLTE P P G SG TP SP+ASRLR Sbjct 230 PKPQVLS-DSEGPLIDLLTEDPPPYRDPRPPPSDGDGNSGEATPAGEAPDPSPMASRLRG 288 Query 59 RRENPAEES 67 RRE P +S Sbjct 289 RREPPVADS 297 >RecName: Full=Gag-Pol polyprotein; Short=Pr180gag-pol; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Cas-Br-E murine leukemia virus] Sequence ID: P08361.2 Length: 1733 Range 1: 140 to 207 Score:35.8 bits(81), Expect:0.010, Method:Compositional matrix adjust., Identities:35/77(45%), Positives:38/77(49%), Gaps:27/77(35%) Query 9 PKPPVLPPDPSSPLIDLLTEEPPPY------------------PGGHGPPPSGPRTPTAS 50 PKP VLP D PLIDLLTE+PPPY P G P P S Sbjct 140 PKPQVLP-DSGGPLIDLLTEDPPPYRDPGPPPSDRDRDDGEAAPAGEAPDP--------S 190 Query 51 PIASRLRERRENPAEES 67 P+ASRLR RRE P +S Sbjct 191 PMASRLRGRRELPVADS 207 >RecName: Full=Gag-Pol polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Pol; Short=NC-pol; Contains: RecName: Full=Protease; Contains: RecName: Full=Reverse transcriptase/ribonuclease H; Short=RT; Contains: RecName: Full=Integrase; Short=IN [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26809.2 Length: 1738 Range 1: 137 to 209 Score:35.8 bits(81), Expect:0.011, Method:Compositional matrix adjust., Identities:36/76(47%), Positives:43/76(56%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRTPTA-----SP 51 P + P+P VLP D PLIDLLTE+PPPY P G+G SG PT SP Sbjct 137 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPPSPDGNG--DSGEVAPTEGAPDPSP 193 Query 52 IASRLRERRENPAEES 67 + SRLR R+E P +S Sbjct 194 MVSRLRGRKEPPVADS 209 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-gag; Short=NC-gag [Murine leukemia virus (strain DEF27)] Sequence ID: P29168.3 Length: 536 Range 1: 137 to 207 Score:35.4 bits(80), Expect:0.013, Method:Compositional matrix adjust., Identities:34/73(47%), Positives:39/73(53%), Gaps:12/73(16%) Query 5 KSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPP-PSGP---------RTPTASPIAS 54 K+ PPK VLP + PLIDLLTE PP G GPP P GP R P+ S Sbjct 137 KTKPPKSRVLPTN-GGPLIDLLTENPPNL-GEQGPPLPKGPVKKRRPPPPRYSPPGPMVS 194 Query 55 RLRERRENPAEES 67 RLR R+ PA +S Sbjct 195 RLRGNRDPPAADS 207 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Cas-Br-E murine leukemia virus] Sequence ID: P0DOH4.1 Length: 624 Range 1: 228 to 295 Score:35.4 bits(80), Expect:0.015, Method:Compositional matrix adjust., Identities:33/77(43%), Positives:36/77(46%), Gaps:27/77(35%) Query 9 PKPPVLPPDPSSPLIDLLTEEPP------------------PYPGGHGPPPSGPRTPTAS 50 PKP VLP D PLIDLLTE+PP P G P P S Sbjct 228 PKPQVLP-DSGGPLIDLLTEDPPPYRDPGPPPSDRDRDDGEAAPAGEAPDP--------S 278 Query 51 PIASRLRERRENPAEES 67 P+ASRLR RRE P +S Sbjct 279 PMASRLRGRRELPVADS 295 >RecName: Full=Glyco-Gag protein; AltName: Full=Gross cell surface antigen; AltName: Full=glycosylated Pr80 gag; Short=gPr80 Gag; Short=gag-gPr80 [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P0DOH5.1 Length: 626 Range 1: 225 to 297 Score:35.0 bits(79), Expect:0.016, Method:Compositional matrix adjust., Identities:36/76(47%), Positives:43/76(56%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRTPTA-----SP 51 P + P+P VLP D PLIDLLTE+PPPY P G+G SG PT SP Sbjct 225 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPPSPDGNG--DSGEVAPTEGAPDPSP 281 Query 52 IASRLRERRENPAEES 67 + SRLR R+E P +S Sbjct 282 MVSRLRGRKEPPVADS 297 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Short=MA; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Short=CA; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Cas-Br-E murine leukemia virus] Sequence ID: P27460.3 Length: 536 Range 1: 140 to 207 Score:35.0 bits(79), Expect:0.017, Method:Compositional matrix adjust., Identities:33/77(43%), Positives:36/77(46%), Gaps:27/77(35%) Query 9 PKPPVLPPDPSSPLIDLLTEEPP------------------PYPGGHGPPPSGPRTPTAS 50 PKP VLP D PLIDLLTE+PP P G P P S Sbjct 140 PKPQVLP-DSGGPLIDLLTEDPPPYRDPGPPPSDRDRDDGEAAPAGEAPDP--------S 190 Query 51 PIASRLRERRENPAEES 67 P+ASRLR RRE P +S Sbjct 191 PMASRLRGRRELPVADS 207 >RecName: Full=Gag polyprotein; AltName: Full=Core polyprotein; Contains: RecName: Full=Matrix protein p15; Contains: RecName: Full=RNA-binding phosphoprotein p12; AltName: Full=pp12; Contains: RecName: Full=Capsid protein p30; Contains: RecName: Full=Nucleocapsid protein p10-Gag; Short=NC-gag [Friend murine leukemia virus (ISOLATE FB29)] Sequence ID: P26806.3 Length: 538 Range 1: 137 to 209 Score:35.0 bits(79), Expect:0.018, Method:Compositional matrix adjust., Identities:36/76(47%), Positives:43/76(56%), Gaps:15/76(19%) Query 4 PKSDPPKPPVLPPDPSSPLIDLLTEEPPPY-------PGGHGPPPSGPRTPTA-----SP 51 P + P+P VLP D PLIDLLTE+PPPY P G+G SG PT SP Sbjct 137 PLNTKPRPQVLP-DSGGPLIDLLTEDPPPYRDPGPPSPDGNG--DSGEVAPTEGAPDPSP 193 Query 52 IASRLRERRENPAEES 67 + SRLR R+E P +S Sbjct 194 MVSRLRGRKEPPVADS 209