FastQCFastQC Report
‘α 27 δεκ 2014
Ath_tae_CTTGTA_L003_R1_006.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameAth_tae_CTTGTA_L003_R1_006.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC9350.022.10219848-49
TATGCCG11100.019.4701946-47
TCGGAAG19700.018.8254263
AGAGCAC19050.018.7012128
CGTATGC11650.018.34243844-45
GAGCACA19250.018.2601579
GCCGTCT9950.016.23355748-49
CACACGT14700.015.50745412-13
ATGCCGT11000.015.32912746-47
GCACACG11850.015.03179910-11
GATCGGA25350.015.0054921
CGTCTGA15200.015.00034116-17
GTATGCC11800.014.48741744-45
AGCACAC16150.014.41191210-11
ATCGGAA27350.014.08134652
AGTCACC16450.013.85772528-29
CGGAAGA26500.013.8161964
CACGTCT16550.013.77588714-15
CCAGTCA17100.013.19210626-27
GGCCCGG2953.552357E-412.8816496
Produced by FastQC (version 0.11.2)