Краткое описание генома вируса Blue squill virus A

Blue squill virus A (далее BSVA) штамм SW.1 был выделен из диких растений Chamaescilla corymbosa (Blue Squill). Позднее данный вирус был выделен из дикорастущей орхидеи Diurus corymbosa. [1]

Последовательность белка

>YP_006990202.1 polyprotein [Blue squill virus A]
MATIMFGDFCYQLNKANTHASLPDPVTCHVKQAVTIKAEHMAAATPVVRRVPSQPRKLGRDLVAEYDRTM
NLLDAALERDEKFQTKLLCDKYGTLQRMKAGRYVIKRASVRKAMESAEMDAALERDHEAFLRGECATEAQ
AGYCKIPTQLHTGCNVSFKSPYWKRSVKAPRHTPRRQHASMSVYELTEWVLTFAAKTGIKLEIIGKGRQH
IKARYVRMRENVIPKVELPHERGIFKYREMDYNVAWKYLMRLCSHGKYKDVVDSDICSGCSGFCFDRRSK
ITTENTELPYFVVRGREGKKLINALDTVSNIEHIHHYAQQGDFQFFKGWKTSFDEMAPHTDDHVCKVDID
NEQCGKFAATISQAVFPVKRLSCLQCRHKLLDMSWEEYKQFVLAHMSCSKNAWDERSIFPGSKVIEKFIK
QATYENMNLEVAMEIVRLTQNHTSTPMLQIQDINKALMKGSSVSQAELDKALKQLLAMTQWWKKHMTLTG
ENSLASFRNKRSAKALLNPSLLCDNQLDKNGNFVWGERGRHSKRFFSNFFEEVIPSEGYAKYVVRKNPNG
QRELAIGSLIVPMNLDRARIALQGKSVKREPLTLACTSKQDGNFVYTCCCVTQDDGKPVYSELKSPTKRH
LVVGTSGEPKYIDLPAVDAEKMYIAREGYCYLNIFLAMLVNVNEEEAKDFTKMVRDVIIPMLGQWPTMMD
LATAVYMLTIFHPETRNAELPRILVDHASQTMHVIDSFGSLTVGYHVLKAGTINQLIQFASDDLQGEMKF
YRVGGDAQHRVRCEAAVIKGIFKPKIMIKLLEQDPYIVLMGMISPSILVHMYRLRHLEKGIELWINKDQE
VAKIFIILEQLTKKVVTVDLLVDQMRAISESAAHLVEVIDNCGHRSDAYMPAKDLLTVIFESNNSNRALN
ENGYLDLNNQLYNEREKIYLNRLKQEWNDLSWLQRSCVTWRLKKFSPSMERSLTERAVEGGGKFSNIFVS
ACFTKATTHLKSVKEYTYKRCEVITTALCKKFVNATLNVVRRCYSDIFYLVNVVLIFSLLTQIIGTARNI
MAVVQNERLVAHLYKQKEEEETLISMYTMYDKTAQRLPSLSEFKDYVEKVRPDLVGRLQSMVGDVDHEEV
TPQAKTAVQLQFEKIIAVLALLTMCIDAERSDAIFRILSKIKTVFTTMGEDVKLQSLDDIENLEDDKKLT
VDFDLDTSAQTTSVSFDIKFEEWWNKQLQQNRVVPHYRTSGEFFEFTRETAAHVANQISTSSCTEFLIRG
AVGSGKSTGLPHHLSKKGKVLLLEPTRPLAENVSKQLAKDPFYQQVTLRMRGLSVFGSSNVTVMTSGFAF
HYYVNNPTQLSDFDYIIIDECHVLDSATIAFNCALKEFEFAGKLLKVSATPPGRECEFKTQHAVKLKIED
QLSFQNFVQAQGTGSNADMIQHGCNLLVYVASYNEVDMLSKLLVDRHFRVTKVDGRTMQMGNVEIVTCGT
EEKPHFVVATNIIENGVTLDIDCVVDFGLKVVALLDSENRCIRYNKKAVTYGERIQRLGRVGRHKPGHAL
RIGCTEKGIEEIPEFIATEAAFLSFAYGLPVTTQGVTTNILANCTVKQARTALNFEITPFLSTHFIKYDG
SMHPEIHNILKAYKLRESQMTLCKLAIPSQFVNQWITVRDYDRMGIRLQCDEKTRVPFYVHGISDKVYET
LWQTVCKYKHDAGFGRISSVNSTKISYTLSTDPSAIPRTLTILDHLLAEEMMKRNHFETIGASLTGYSFS
LAGIADGFRKRYLRDYSAQNIATLQHAKAMLLEFDCKKVDLNNLHNLEGVGVLHTVRLQSKNEIAKFLQL
KGKWDGKKFMNDIFVGIITLIGGGWLLWEYFSKKLQEPVTTQGKKRQMQKLKFRDARDRKLGREIYADDY
TMEHTFGEAYTKKGKVKGSTHTKGMGRKTRNFTHIYGVEPDNYNFIRFVDPLTGHTMDENTRVDIRIVQE
EFGEVRKQKILDDELSRERVVSNPGIQAYFIGKNTEEALKIDLTPHVPTLLCQNSNAISGFPEREDELRQ
TGPPVHIKVSEVPASNKIVETESKSVYRGLRDYNTTSTLVCKLSNESDGHIETLYGVGYGSYIITNGHLF
RRNNGRLNIKTWHGEFTIANATQIRIHFIEGKDLILIRMPKDFPPFAKKSIFRSPRKEERVCIVGTNFQD
KSMRATISESSMILPEGKGSFWIHWVSTKNGECGLPMVSTTDGCIVGIHGLSSNESDKNFFIPFVDNFEK
EFLLNAQDLSWDKHWLWQPDKIAWGSLKLVTEQPREDFKISKLVSDLFDDEVCTQSKQERWVLEGVSGNL
VACGKMDSSLVTKHVIKGKCGYFEEYLCSHPKEKEFFTPLMGAYQPSKLNREAFKKDFFKYNKPIILNEV
NFQSFECAVNGVKQMMMGFGFRRCVFVTDVDDIFDSLNMKAAVGAQYRGKKNEYLADFDTQDKERLLFLS
SERLFNGEKGIWNGSLKAELRPIEKVQQNKTRTFTAAPIDTLLGAKVCVDDFNNQFYSFHLECPWTVGMT
KFYGGWDKLMRKLPDGWVYCHADGSQFDSSLTPLLINAVLDIRCFFMEDWWVGQEMLENLYAEIVYTPIL
APDGTIFKKFRGNNSGQPSTVVDNTLMVVIAVYYSSIQLGWTCDDVQSRLVFFANGDDIVLAVQEADVYV
YDHFAKSFAELGLVYNFDERTRNREDLWFMSHKAIEVEGLYIPKLEEERIVSILEWDRSKEVMHRTEAIC
ASMIEAWGYPDLLKEIRKFYLWLVQRDEFKELAALGKTPYIAETALKKLYIDKNASHSELSAYLTAITEN
HENECGETVSLQSDQKAGEALDAGAGAKKDKKAPNIGEKETPEGSGSGVKDKDVNVGTQGRVVPRLQKIT
KKMNLPMVKGNMILNLNHLLEYKPNQEKLWNTRATDSQFSSWYEAVKQEYDLDDTQMSIVMNGFMVWCID
NGTSPDVNGVWVMMDGDEQVEYPLKPMVENAKPTLRQIMHHFSDAAEAYIEMRCSMGSYMPRYGLLRNLR
DKSLARYAFDFYEVTAKTSTRAREAVAQMKAAALSNVNNKLFGLDGNVATTSENTERHTARDVNQNMHTL
LGMAPMQ

Таблица 1. Краткое описание генома вируса

Параметр	Значение
Латинское название вируса	Blue squill virus A
Русское название вируса	Вирус морсокого лука
Количество фрагментов в полном геноме	1
Общая длина генома (п.н.)	9842
Количество кодируемых в геноме белков	1

Источники:

[1]Stephen J. Wylie , Hua Li, Krishnapillai Sivasithamparam, Michael G. K. Jones, Complete genome analysis of three isolates