BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: bact.fasta 34,328 sequences; 10,880,597 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q8ZRC0|CLPX_SALTY ATP-dependent Clp protease ATP-binding sub... 843 0.0 sp|A4W7A9|CLPX_ENT38 ATP-dependent Clp protease ATP-binding sub... 839 0.0 sp|B4EU54|CLPX_PROMH ATP-dependent Clp protease ATP-binding sub... 769 0.0 sp|B5FBZ9|CLPX_VIBFM ATP-dependent Clp protease ATP-binding sub... 706 0.0 sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding sub... 612 0.0 sp|B2UFQ3|CLPX_RALPJ ATP-dependent Clp protease ATP-binding sub... 608 0.0 tr|B9JD32|B9JD32_AGRRK ATP-dependent Clp protease ATP-binding s... 595 0.0 sp|Q3J1G7|CLPX_RHOS4 ATP-dependent Clp protease ATP-binding sub... 568 0.0 sp|B2U7X3|HSLU_RALPJ ATP-dependent protease ATPase subunit HslU... 99.8 8e-23 sp|B4F171|HSLU_PROMH ATP-dependent protease ATPase subunit HslU... 96.7 1e-21 sp|Q3J6B1|HSLU_RHOS4 ATP-dependent protease ATPase subunit HslU... 95.9 2e-21 sp|B5FBL8|HSLU_VIBFM ATP-dependent protease ATPase subunit HslU... 94.4 5e-21 sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU... 93.2 1e-20 sp|A4WG67|HSLU_ENT38 ATP-dependent protease ATPase subunit HslU... 92.0 4e-20 sp|B9JG71|HSLU_AGRRK ATP-dependent protease ATPase subunit HslU... 91.7 4e-20 sp|O30911|HSLU_SALTY ATP-dependent protease ATPase subunit HslU... 91.7 4e-20 tr|B4F2B3|B4F2B3_PROMH ATP-dependent zinc metalloprotease FtsH ... 46.6 2e-05 tr|A4WEY9|A4WEY9_ENT38 ATP-dependent zinc metalloprotease FtsH ... 46.2 2e-05 sp|P63343|FTSH_SALTY ATP-dependent zinc metalloprotease FtsH OS... 46.2 3e-05 tr|B5FA73|B5FA73_VIBFM ATP-dependent zinc metalloprotease FtsH ... 45.4 4e-05 tr|B9J9H1|B9J9H1_AGRRK ATP-dependent zinc metalloprotease FtsH ... 45.1 5e-05 tr|Q3J045|Q3J045_RHOS4 ATP-dependent zinc metalloprotease FtsH ... 43.5 2e-04 tr|Q9CNJ2|Q9CNJ2_PASMU ATP-dependent zinc metalloprotease FtsH ... 43.1 2e-04 tr|B2UGP9|B2UGP9_RALPJ ATP-dependent zinc metalloprotease FtsH ... 43.1 2e-04 sp|P57015|YIFB_SALTY Uncharacterized protein YifB OS=Salmonella... 42.4 3e-04 > sp|Q8ZRC0|CLPX_SALTY ATP-dependent Clp protease ATP-binding subunit ClpX OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=clpX PE=3 SV=1 Length=423 Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/424 (98%), Positives = 421/424 (99%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIR HLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP Sbjct 61 RSALPTPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI++RVETGSGIGFGATVKAKSDKASEGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIANRVETGSGIGFGATVKAKSDKASEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA+ Sbjct 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAR 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI GQSKPLLIYGKPEA Q Sbjct 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIAGQSKPLLIYGKPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 > sp|A4W7A9|CLPX_ENT38 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Enterobacter sp. (strain 638) GN=clpX PE=3 SV=1 Length=424 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/424 (97%), Positives = 420/424 (99%), Gaps = 0/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RSALPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP Sbjct 61 RSALPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS+KA+EGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSEKANEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATLNELSE+ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL AIAK Sbjct 301 IPEFIGRLPVVATLNELSEDALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALIAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAM RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE+VI GQ+KPLLIYGKPEAQQ Sbjct 361 KAMIRKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDEAVISGQTKPLLIYGKPEAQQ 420 Query 421 ASGE 424 ASGE Sbjct 421 ASGE 424 > sp|B4EU54|CLPX_PROMH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Proteus mirabilis (strain HI4320) GN=clpX PE=3 SV=1 Length=423 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/424 (89%), Positives = 403/424 (95%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKD SGKLLYCSFCGKSQHEV+KLIAGPSVYICDECVDLC DIIREEIKE+APH E Sbjct 1 MTDKRKDSSGKLLYCSFCGKSQHEVKKLIAGPSVYICDECVDLCVDIIREEIKELAPHHE 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS LPTPHEIR HLDDYVIGQE AKKVLAVAVYNHYKRLRNGD ++GVELGKSNILLIGP Sbjct 61 RSELPTPHEIRKHLDDYVIGQELAKKVLAVAVYNHYKRLRNGDKADGVELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLAR LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARYLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKI+RKS+NPSITRDVSGEGVQQALLKL+EGTVA+VPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKV++ R+ T SGIGFGA VK++++KASEGELLAQVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVVAQRLNTHSGIGFGAEVKSQNEKASEGELLAQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL EL+E+ALIQIL+EPKNALTKQYQALF LEGVDLEFR +AL AIAK Sbjct 301 IPEFIGRLPVVATLGELNEDALIQILQEPKNALTKQYQALFKLEGVDLEFRKDALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAM+RKTGARGLRSIVEAALLDTMYDLPS E+ EKVVIDE+VI+G+S+PL+IY +PE Q Sbjct 361 KAMSRKTGARGLRSIVEAALLDTMYDLPSFENAEKVVIDENVINGKSEPLIIYSQPE-NQ 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 > sp|B5FBZ9|CLPX_VIBFM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Vibrio fischeri (strain MJ11) GN=clpX PE=3 SV=1 Length=428 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/428 (81%), Positives = 382/428 (89%), Gaps = 4/428 (1%) Query 1 MTDKRKD-GSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE--VAP 57 MTDKRKD SGKLLYCSFCGKSQHEVRKLIAGPSVY+CDECVDLCNDIIREE+K+ ++P Sbjct 1 MTDKRKDENSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVDLCNDIIREELKDNTLSP 60 Query 58 HRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-NGVELGKSNIL 116 LPTP IR HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDT+ +GVELGKSNIL Sbjct 61 KESSEELPTPRNIREHLDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTKDGVELGKSNIL 120 Query 117 LIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKA 176 LIGPTGSGKTLLAETLAR LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD KA Sbjct 121 LIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDPAKA 180 Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 +RGIVYIDEIDKISRKS+NPSITRDVSGEGVQQALLKLIEGT+A+VPPQGGRKHPQQEFL Sbjct 181 ERGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFL 240 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 QVDTSKILFICGGAFAGLDKVI RV TG+GIGFGA V++K ++A+ G+L Q+EPEDL+ Sbjct 241 QVDTSKILFICGGAFAGLDKVIEQRVATGTGIGFGADVRSKDNEATIGDLFKQIEPEDLV 300 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLPV TL EL EEAL+QIL +PKNALTKQY ALF+LEG +LEFR++AL Sbjct 301 KFGLIPEFIGRLPVTTTLTELDEEALVQILSQPKNALTKQYGALFDLEGAELEFREDALK 360 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKP 416 AIAKKAM RKTGARGLRSI+EA LL+TMY+LPS E V KVVIDESVI+G+S+PLLI+ Sbjct 361 AIAKKAMDRKTGARGLRSILEAVLLETMYELPSKEGVSKVVIDESVINGESEPLLIFENT 420 Query 417 EAQQASGE 424 E + S E Sbjct 421 ETKAISAE 428 > sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pasteurella multocida (strain Pm70) GN=clpX PE=3 SV=1 Length=411 Score = 612 bits (1579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/403 (74%), Positives = 342/403 (85%), Gaps = 2/403 (0%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV--APHRERSALPTPHEI 70 L+CSFCGK Q V KLIAG S YIC+EC++LC+D++ + E E+ LPTPHEI Sbjct 7 LHCSFCGKEQKHVSKLIAGTSGYICNECIELCHDMLLSDAVETPEVESTEQQKLPTPHEI 66 Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAE 130 R HLDDYVIGQ+ AKKVL+VAVYNHYKRLR+ VELGKSNILLIGPTGSGKTLLAE Sbjct 67 RAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGKTLLAE 126 Query 131 TLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 T+AR+L+VPF MADATTLTEAGYVGEDVEN++QKL+Q CDYDV++A++GI+YIDEIDKI+ Sbjct 127 TMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDVERAEQGIIYIDEIDKIT 186 Query 191 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 250 RKS+NPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHPQQE L+VDTSKILFICGGA Sbjct 187 RKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGA 246 Query 251 FAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 310 FAGLDKVI RV GSGIGF A VK+K DKA+ +L QVEP+DL+KFGLIPEFIGRLPV Sbjct 247 FAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 306 Query 311 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGAR 370 VA L EL EEAL++IL EPKNAL KQYQALF+LE V LEF EAL A+AKKA+ARKTGAR Sbjct 307 VAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGAR 366 Query 371 GLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GLRSIVEA LLDTMYDLPS++ +EKV+++ S I P L+Y Sbjct 367 GLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLVY 409 > sp|B2UFQ3|CLPX_RALPJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Ralstonia pickettii (strain 12J) GN=clpX PE=3 SV=1 Length=424 Score = 608 bits (1569), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/418 (73%), Positives = 349/418 (83%), Gaps = 9/418 (2%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M DK+ KLLYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLCN+IIR+E +E Sbjct 1 MADKKGSTGEKLLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDE--AAISEKE 58 Query 61 -----RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNI 115 +S LPTPHEIR LD YVIGQEQAKK+LAVAVYNHYKRL++ + VEL KSNI Sbjct 59 GGLAVKSDLPTPHEIRQSLDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNI 118 Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LLIGPTGSGKTLLA+TLARLL+VPF +ADATTLTEAGYVGEDVENIIQKLLQ C+Y+V K Sbjct 119 LLIGPTGSGKTLLAQTLARLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDK 178 Query 176 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 235 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKL+EGT+A+VPPQGGRKHP Q+F Sbjct 179 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQDF 238 Query 236 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 LQVDT+ ILFICGGAF GL+K+I R + +GIGFGA V++K ++ E+L QVEPEDL Sbjct 239 LQVDTTNILFICGGAFDGLEKIIMQRSDK-TGIGFGAEVQSKEER-DVSEVLPQVEPEDL 296 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 IKFGLIPE IGRLPVVATL +L E AL++IL EPKNA+ KQYQ L +EGV+LE R L Sbjct 297 IKFGLIPELIGRLPVVATLAKLDEAALMEILVEPKNAIVKQYQKLLAMEGVELEIRPSGL 356 Query 356 DAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 AIA+KA+ RKTGARGLRSIVE AL+D MYDLP+ + V+KVVIDES I + KPLLIY Sbjct 357 TAIARKAIKRKTGARGLRSIVEHALMDVMYDLPNHKGVQKVVIDESTISDEGKPLLIY 414 > tr|B9JD32|B9JD32_AGRRK ATP-dependent Clp protease ATP-binding subunit ClpX OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=clpX PE=3 SV=1 Length=470 Score = 595 bits (1534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/415 (70%), Positives = 346/415 (83%), Gaps = 3/415 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 57 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SMVKSRDGVPTPQ 115 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 +I LD+YVIGQ QAKK+L+VAV+NHYKRL + + VEL KSNI+L+GPTG GKT L Sbjct 116 DIIKVLDEYVIGQRQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYL 175 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPFTMADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 176 AQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 235 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 236 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 295 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLDK+IS R E S IGFGA VK D+ GE+L ++EPEDL+KFGLIPEFIGRL Sbjct 296 GAFAGLDKIISARGEKTS-IGFGAAVKGPDDRRV-GEVLRELEPEDLVKFGLIPEFIGRL 353 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L E+ALIQIL EPKNAL KQYQ LF +E V+L F ++AL IA++A+ RKTG Sbjct 354 PVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTG 413 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQASG 423 ARGLRSI+E LLDTM+DLP++E V +VVI E V+ G ++PL IY + ++A+ Sbjct 414 ARGLRSIMEKILLDTMFDLPALEGVREVVISEEVVRGSARPLYIYADRQDEKANA 468 > sp|Q3J1G7|CLPX_RHOS4 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=clpX PE=3 SV=1 Length=421 Score = 568 bits (1463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/413 (70%), Positives = 338/413 (82%), Gaps = 4/413 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 M + S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + Sbjct 1 MANNTGSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETKSTG-LKS 59 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 +PTP EI LDDYVIGQ AK+VL+VAV+NHYKRL N + +EL KSNILLIGP Sbjct 60 ADGVPTPREICKVLDDYVIGQMHAKRVLSVAVHNHYKRL-NHSSKTDIELSKSNILLIGP 118 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TG GKTLLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++ QRGI Sbjct 119 TGCGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQASEYNVERVQRGI 178 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDE+DKI+RKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT Sbjct 179 VYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDT 238 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 + ILFICGGAFAGL+K+I+ R + GSGIGFGA VK D GEL ++EPEDL KFGL Sbjct 239 TNILFICGGAFAGLEKIIAQRGK-GSGIGFGAEVK-DPDARGVGELFKELEPEDLPKFGL 296 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEF+GRLPV+ATL +L E AL+ IL EPKNAL KQYQ LF +EGV L F +AL AIAK Sbjct 297 IPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAK 356 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 +A+ RKTGARGLRSI+E LLDTM++LP +E VE+VV++E ++ +KPLLIY Sbjct 357 RAIKRKTGARGLRSIMEDILLDTMFELPGLEGVEEVVVNEEAVNSGAKPLLIY 409 > sp|B2U7X3|HSLU_RALPJ ATP-dependent protease ATPase subunit HslU OS=Ralstonia pickettii (strain 12J) GN=hslU PE=3 SV=1 Length=443 Score = 99.8 bits (247), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ +AKK +AVA+ N ++R + GD E+ NIL+IGPTG GK Sbjct 6 TPSEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVGDPLRQ-EITPKNILMIGPTGVGK 64 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L D PF +AT TE GYVG DV+ I++ L Sbjct 65 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDL 104 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 110/246 (45%), Gaps = 62/246 (25%) Query 164 KLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVP 223 +L QK +V+ Q GIV++DEIDKI+ +S+ +VS +GVQ+ LL L+EGT Sbjct 238 ELKQKAVANVE--QNGIVFLDEIDKIASRSEYGG--GEVSRQGVQRDLLPLVEGTTV--- 290 Query 224 PQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASE 283 ++ + T ILFI GAF L K Sbjct 291 --------NTKYGMIKTDHILFIASGAFH-LSK--------------------------- 314 Query 284 GELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNL 343 P DLI PE GR P+ L+ LS E IL + +LTKQYQAL Sbjct 315 --------PSDLI-----PELQGRFPIRVELDSLSVEDFRAILTQTDASLTKQYQALLKT 361 Query 344 EGVDLEFRDEALDAIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVI 398 EGVDL F ++ + +A+ A + GAR L +++E L D + E V I Sbjct 362 EGVDLVFAEDGIRRLAEIACSVNEKVENIGARRLYTVMERLLEDLSFH-AHKSSGETVTI 420 Query 399 DESVID 404 D + +D Sbjct 421 DAAYVD 426 > sp|B4F171|HSLU_PROMH ATP-dependent protease ATPase subunit HslU OS=Proteus mirabilis (strain HI4320) GN=hslU PE=3 SV=1 Length=446 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ D + E+ NIL+IGPTG GK Sbjct 5 TPREIASELDRFIIGQDKAKRAVAIALRNRWRRMQ-LDEALRHEVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 94.0 bits (232), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 101/228 (44%), Gaps = 59/228 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDE+DKI ++ S DVS EGVQ+ LL L+EG + KH Sbjct 251 QHGIVFIDEVDKICKRGGQSS-GPDVSREGVQRDLLPLVEGCTVST------KHGM---- 299 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 300 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 320 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ E +IL EP +LTKQYQAL EGV + F + + Sbjct 321 ---LIPELQGRLPIRVELQALTAEDFERILTEPNASLTKQYQALMATEGVSINFSQDGIR 377 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVID 399 IA+ A GAR L +++E + + YD S E ++ID Sbjct 378 KIAESAWRVNETTENIGARRLHTVLERLMEEISYD-ASERQGETILID 424 > sp|Q3J6B1|HSLU_RHOS4 ATP-dependent protease ATPase subunit HslU OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=hslU PE=3 SV=1 Length=433 Score = 95.9 bits (237), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +AVA+ N ++R + D E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQKEAKRAVAVALRNRWRRKQLADDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 166 T ++ LARL PF +AT TE GYVG DV++II+ L+ Sbjct 64 TEISRRLARLAKAPFLKVEATKFTEVGYVGRDVDSIIRDLV 104 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 104/233 (45%), Gaps = 60/233 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDK+ +SD DVS EGVQ+ LL LIEGT + ++ Sbjct 239 QNGIVFIDEIDKVCARSDMRGA--DVSREGVQRDLLPLIEGTTVST-----------KYG 285 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF H +P DL+ Sbjct 286 PVKTDHILFIASGAF--------H----------------------------IAKPSDLL 309 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L L+EE ++IL E NALT QY+AL E V + F ++ + Sbjct 310 -----PELQGRLPIRVELRALTEEDFVRILSETDNALTLQYKALMQTEKVGITFTEDGIA 364 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 A+A A GAR L +++E + + P E+V +D + ++ Sbjct 365 ALASIAAEVNRSVENIGARRLYTVMERVFEELSFHAPDRSG-EEVTVDAAYVE 416 > sp|B5FBL8|HSLU_VIBFM ATP-dependent protease ATPase subunit HslU OS=Vibrio fischeri (strain MJ11) GN=hslU PE=3 SV=1 Length=444 Score = 94.4 bits (233), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ E+ NIL+IGPTG GK Sbjct 5 TPREIVHELDSHIIGQDKAKRSVAIALRNRWRRMQLAPELR-TEVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++VE+II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVESIIRDL 103 Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 75/242 (31%), Positives = 112/242 (46%), Gaps = 62/242 (26%) Query 163 QKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAV 222 ++L ++ ++V+ GIV+IDEIDKI + S++ S DVS EGVQ+ LL L+EG+ + Sbjct 238 EELKEQAIFNVE--NHGIVFIDEIDKICKGSNSHS--GDVSREGVQRDLLPLVEGSTVST 293 Query 223 PPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKAS 282 KH V T +LFI GAF Sbjct 294 ------KHGM-----VKTDHMLFITSGAFQ------------------------------ 312 Query 283 EGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFN 342 +P DLI PE GRLP+ L L+ +IL EP +LT+QY AL Sbjct 313 ------MAKPSDLI-----PELQGRLPIRVELEALTANDFKRILTEPNASLTEQYIALLA 361 Query 343 LEGVDLEFRDEALDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVV 397 E V +EF ++ + IA+ A GAR L +++E + + YD S ++ E ++ Sbjct 362 TENVKVEFTEDGISRIAESAFQVNETTENIGARRLHTVMERLMEEISYD-ASEKNGESLI 420 Query 398 ID 399 +D Sbjct 421 VD 422 > sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU OS=Pasteurella multocida (strain Pm70) GN=hslU PE=3 SV=1 Length=443 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 107/233 (46%), Gaps = 62/233 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EGT + KH Sbjct 249 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGTTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 297 -VKTDHILFIASGAF-------------------------------------QVARPSDL 318 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L+ LS +IL EP +LT+QY+AL EGV++EF E++ Sbjct 319 I-----PELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMATEGVNIEFTGESI 373 Query 356 DAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 IA+ A GAR L +++E + ++ M+ + V IDE+ + Sbjct 374 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQG-QVVRIDEAYV 425 Score = 92.4 bits (228), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 > sp|A4WG67|HSLU_ENT38 ATP-dependent protease ATPase subunit HslU OS=Enterobacter sp. (strain 638) GN=hslU PE=3 SV=1 Length=443 Score = 92.0 bits (227), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ D E+ NIL+IGPTG GK Sbjct 5 TPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQ-LDEELRHEVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 73/217 (34%), Positives = 96/217 (44%), Gaps = 63/217 (29%) Query 177 QRGIVYIDEIDKISRK--SDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 Q GIV+IDEIDKI ++ S+ P DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGESNGP----DVSREGVQRDLLPLVEGCTVST------KHGM-- 296 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 V T ILFI GAF V SD Sbjct 297 ---VKTDHILFIASGAF---------------------QVAKPSD--------------- 317 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 LIPE GRLP+ L L+ + +IL EP ++T QY+AL EGV +EF + Sbjct 318 -----LIPELQGRLPIRVELQALTTDDFERILTEPNASITVQYKALMATEGVTIEFTADG 372 Query 355 LDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 + IA+ A GAR L +++E + D Y+ Sbjct 373 IKRIAQAAWQVNETTENIGARRLHTVLERLVEDISYE 409 > sp|B9JG71|HSLU_AGRRK ATP-dependent protease ATPase subunit HslU OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hslU PE=3 SV=1 Length=436 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 47/108 (44%), Positives = 68/108 (63%), Gaps = 13/108 (12%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKR------LRNGDTSNGVELGKSNILLIG 119 +P EI + LD Y++GQ +AK+ +A+A+ N ++R LR+ E+ NIL+IG Sbjct 5 SPREIVSELDRYIVGQHEAKRAVAIALRNRWRRQQLEPDLRD-------EVMPKNILMIG 57 Query 120 PTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQ 167 PTG GKT ++ LA+L PF +AT TE GYVG DVE II+ L++ Sbjct 58 PTGVGKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRDLVE 105 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/213 (32%), Positives = 100/213 (47%), Gaps = 59/213 (28%) Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIV++DEIDKI+ + + + VS EGVQ+ LL L+EGT + ++ V Sbjct 244 GIVFLDEIDKIAAR--DGGMGAGVSREGVQRDLLPLVEGTTVST-----------KYGPV 290 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 T ILFI GAF V SD Sbjct 291 KTDHILFIASGAFH---------------------VSKPSD------------------- 310 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 L+PE GRLP+ L L++E +IL EP+ +L +QY+AL E + L+F D+A+DA+ Sbjct 311 -LLPELQGRLPIRVELRPLTKEDFRRILTEPEASLIRQYKALMETEDLKLDFTDDAIDAL 369 Query 359 AKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 A A+ GAR L++++E L + Y+ Sbjct 370 ADVAVHLNSTVENIGARRLQTVMERVLDEISYN 402 > sp|O30911|HSLU_SALTY ATP-dependent protease ATPase subunit HslU OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=hslU PE=3 SV=2 Length=443 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + L+ ++IGQ+ AK+ +A+A+ N ++R++ D E+ NIL+IGPTG GK Sbjct 5 TPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQ-LDEELRHEVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 88.2 bits (217), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 94/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ + DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGETSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V SD Sbjct 297 -VKTDHILFIASGAF---------------------QVAKPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ +IL EP ++T QY+AL EGV++EF D + Sbjct 318 ---LIPELQGRLPIRVELQALTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSGIK 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + + Y+ Sbjct 375 RIAEAAWQVNETTENIGARRLHTVLERLMEEISYN 409 > tr|B4F2B3|B4F2B3_PROMH ATP-dependent zinc metalloprotease FtsH OS=Proteus mirabilis (strain HI4320) GN=ftsH PE=3 SV=1 Length=646 Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (36%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 IL++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 ILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 > tr|A4WEY9|A4WEY9_ENT38 ATP-dependent zinc metalloprotease FtsH OS=Enterobacter sp. (strain 638) GN=ftsH PE=3 SV=1 Length=644 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 > sp|P63343|FTSH_SALTY ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ftsH PE=3 SV=1 Length=644 Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 > tr|B5FA73|B5FA73_VIBFM ATP-dependent zinc metalloprotease FtsH OS=Vibrio fischeri (strain MJ11) GN=ftsH PE=3 SV=1 Length=657 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (50%), Gaps = 16/137 (12%) Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELG---KSNI 115 + ++ + T +I+ DD V G ++AK+ + V Y R + S +LG + + Sbjct 137 KSKAKMMTEEQIKTTFDD-VAGCDEAKEDVKELV--DYLR----EPSRFQKLGGKIPTGV 189 Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LL+GP G+GKTL+A+ +A VPF + E +VG + Q +K Sbjct 190 LLVGPPGTGKTLIAKAIAGEAKVPFFSISGSDFVEM-FVGVGASRVRDMFEQ-----AKK 243 Query 176 AQRGIVYIDEIDKISRK 192 + I++IDEID + R+ Sbjct 244 SSPCIIFIDEIDAVGRQ 260 > tr|B9J9H1|B9J9H1_AGRRK ATP-dependent zinc metalloprotease FtsH OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ftsH PE=3 SV=1 Length=647 Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A +VPF + E +VG + Q + Sbjct 194 VLLVGPPGTGKTLLARAIAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 247 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 248 KNAPCIIFIDEIDAVGR 264 > tr|Q3J045|Q3J045_RHOS4 ATP-dependent zinc metalloprotease FtsH OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=ftsH PE=3 SV=1 Length=633 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/138 (32%), Positives = 60/138 (43%), Gaps = 20/138 (14%) Query 59 RERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVY-----NHYKRLRNGDTSNGVELGKS 113 + R+ L T + R DD V G ++AK+ L V + RL G G Sbjct 138 KSRAKLLTEKQGRVTFDD-VAGIDEAKEELEEIVEFLRNPQKFSRL-GGKIPKGA----- 190 Query 114 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173 LL+GP G+GKTLLA +A VPF + E +VG + Q Sbjct 191 --LLVGPPGTGKTLLARAIAGEAGVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----A 242 Query 174 QKAQRGIVYIDEIDKISR 191 +K IV+IDEID + R Sbjct 243 KKNAPCIVFIDEIDAVGR 260 > tr|Q9CNJ2|Q9CNJ2_PASMU ATP-dependent zinc metalloprotease FtsH OS=Pasteurella multocida (strain Pm70) GN=ftsH PE=3 SV=1 Length=639 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 IL++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 186 ILMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 239 Query 175 KAQRGIVYIDEIDKISRK 192 K +++IDEID + R+ Sbjct 240 KNAPCLIFIDEIDAVGRQ 257 > tr|B2UGP9|B2UGP9_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii (strain 12J) GN=ftsH PE=3 SV=1 Length=628 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA +A VPF + E +VG ++ + + + + Sbjct 190 VLLVGPPGTGKTLLARAIAGEAKVPFFSISGSDFVEM-FVGVGAAR-VRDMFE----NAK 243 Query 175 KAQRGIVYIDEIDKISR 191 K IV+IDEID + R Sbjct 244 KQAPCIVFIDEIDAVGR 260 > sp|P57015|YIFB_SALTY Uncharacterized protein YifB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yifB PE=3 SV=1 Length=506 Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/138 (25%), Positives = 58/138 (42%), Gaps = 42/138 (30%) Query 78 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 137 VIGQEQ K+ L + G N+LLIGP G+GKT+LA L+ +L Sbjct 193 VIGQEQGKRGLEITAA-----------------GGHNLLLIGPPGTGKTMLASRLSGILP 235 Query 138 VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDY----------------------DVQK 175 +++ L A + + +QK Q+ + ++ Sbjct 236 ---PLSNEEALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISL 292 Query 176 AQRGIVYIDEIDKISRKS 193 A GI+++DE+ + R++ Sbjct 293 AHNGILFLDELPEFERRT 310 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2413086228 Database: bact.fasta Posted date: Apr 15, 2016 9:54 PM Number of letters in database: 10,880,597 Number of sequences in database: 34,328 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40