RMSD of the bases (----- for WC bp, + for isolated bp, x for helix change) Strand I Strand II Helix 1 (0.008) ....>T:...4_:[..G]G-----C[..C]:..69_:T<.... (0.008) | 2 (0.009) ....>T:...5_:[..G]G-----C[..C]:..68_:T<.... (0.006) | 3 (0.012) ....>T:...6_:[..A]A-----U[..U]:..67_:T<.... (0.003) | 4 (0.005) ....>T:...7_:[..G]G-----C[..C]:..66_:T<.... (0.010) | 5 (0.005) ....>T:..49_:[..G]G-*---U[..U]:..65_:T<.... (0.010) | 6 (0.004) ....>T:..50_:[..C]C-----G[..G]:..64_:T<.... (0.013) | 7 (0.002) ....>T:..51_:[..U]U-----A[..A]:..63_:T<.... (0.004) | 8 (0.006) ....>T:..52_:[..G]G-----C[..C]:..62_:T<.... (0.002) | 9 (0.005) ....>T:..53_:[..G]G-----C[..C]:..61_:T<.... (0.005) | 10 (0.006) ....>T:..54_:[5MU]t-**--G[..G]:..58_:T<.... (0.006) | 11 (0.026) ....>T:..55_:[PSU]P-**+-G[..G]:..18_:T<.... (0.012) x 12 (0.011) ....>T:..38_:[..A]A-----U[..U]:..32_:T<.... (0.009) | 13 (0.003) ....>T:..39_:[..C]C-----G[..G]:..31_:T<.... (0.006) | 14 (0.006) ....>T:..40_:[..G]G-----C[..C]:..30_:T<.... (0.007) | 15 (0.008) ....>T:..41_:[..A]A-----U[..U]:..29_:T<.... (0.009) | 16 (0.005) ....>T:..42_:[..G]G-----C[..C]:..28_:T<.... (0.005) | 17 (0.008) ....>T:..43_:[..G]G-----C[..C]:..27_:T<.... (0.007) | 18 (0.007) ....>T:..44_:[..G]G-**--A[..A]:..26_:T<.... (0.008) | 19 (0.004) ....>T:..10_:[..G]G-----C[..C]:..25_:T<.... (0.006) | 20 (0.003) ....>T:..11_:[..C]C-----G[..G]:..24_:T<.... (0.004) | 21 (0.004) ....>T:..12_:[..G]G-----C[..C]:..23_:T<.... (0.003) | 22 (0.004) ....>T:..13_:[..C]C-----G[..G]:..22_:T<.... (0.005) | 23 (0.003) ....>T:..14_:[..A]A-**--U[..U]:...8_:T<.... (0.004) | 24 (0.004) ....>T:..15_:[..G]G-**+-C[..C]:..48_:T<.... (0.007) x 25 (0.011) ....>T:..19_:[..G]G-----C[..C]:..56_:T<.... (0.005) + Note: This structure contains 6[5] non-Watson-Crick base-pairs. **************************************************************************** Detailed H-bond information: atom-name pair and length [ O N] 1 G-----C [3] O6 - N4 2.82 N1 - N3 2.93 N2 - O2 2.92 2 G-----C [3] O6 - N4 2.73 N1 - N3 2.86 N2 - O2 2.90 3 A-----U [2] N6 - O4 2.94 N1 - N3 2.63 4 G-----C [3] O6 - N4 3.02 N1 - N3 2.98 N2 - O2 2.81 5 G-*---U [2] O6 - N3 2.92 N1 - O2 2.94 6 C-----G [3] O2 - N2 2.69 N3 - N1 2.90 N4 - O6 3.05 7 U-----A [2] N3 - N1 2.65 O4 - N6 2.83 8 G-----C [2] O6 * N3 2.44 N1 - O2 2.87 9 G-----C [3] O6 - N4 2.69 N1 - N3 2.63 N2 - O2 2.50 10 t-**--G [2] N3 - N7 2.51 O2 * O6 2.55 11 P-**+-G [2] O4 * N1 2.69 O2'* O6 3.43 12 A-----U [2] N6 - O4 2.93 N1 - N3 2.64 13 C-----G [3] O2 - N2 2.61 N3 - N1 2.80 N4 - O6 2.92 14 G-----C [3] O6 - N4 2.86 N1 - N3 2.81 N2 - O2 2.60 15 A-----U [2] N6 - O4 2.79 N1 - N3 2.78 16 G-----C [3] O6 - N4 3.13 N1 - N3 2.87 N2 - O2 2.66 17 G-----C [3] O6 - N4 3.00 N1 - N3 2.82 N2 - O2 2.79 18 G-**--A [2] O6 - N6 3.05 N1 - N1 2.98 19 G-----C [3] O6 - N4 3.10 N1 - N3 2.84 N2 - O2 2.46 20 C-----G [3] O2 - N2 2.38 N3 - N1 2.50 N4 - O6 2.50 21 G-----C [3] O6 - N4 2.85 N1 - N3 2.78 N2 - O2 2.63 22 C-----G [3] O2 - N2 2.66 N3 - N1 2.81 N4 - O6 2.89 23 A-**--U [2] N7 - N3 2.65 N6 - O2 2.49 24 G-**+-C [2] N1 - O2 2.73 N2 - N3 2.77 25 G-----C [3] O6 - N4 2.87 N1 - N3 2.70 N2 - O2 2.62