BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: proteomes.fasta 33,307 sequences; 11,008,182 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q820F8|CLPX_STRAW ATP-dependent Clp protease ATP-binding subun... 535 0.0 tr|Q1AVT0|Q1AVT0_RUBXD ATP-dependent Clp protease ATP-binding sub... 524 0.0 sp|A1TCB3|CLPX_MYCVP ATP-dependent Clp protease ATP-binding subun... 523 0.0 sp|P9WPB9|CLPX_MYCTU ATP-dependent Clp protease ATP-binding subun... 519 0.0 sp|Q8FN57|CLPX_COREF ATP-dependent Clp protease ATP-binding subun... 518 0.0 sp|A0LSV2|CLPX_ACIC1 ATP-dependent Clp protease ATP-binding subun... 517 0.0 sp|A0JXL2|CLPX_ARTS2 ATP-dependent Clp protease ATP-binding subun... 516 0.0 sp|B0RAS4|CLPX_CLAMS ATP-dependent Clp protease ATP-binding subun... 491 2e-173 tr|A0K1M3|A0K1M3_ARTS2 ATPase AAA-2 domain protein OS=Arthrobacte... 54.3 7e-08 tr|Q1AU05|Q1AU05_RUBXD ATPase AAA-2 OS=Rubrobacter xylanophilus (... 52.0 4e-07 tr|Q8FMH5|Q8FMH5_COREF Putative endopeptidase Clp ATP-binding cha... 47.0 1e-05 tr|A0LW31|A0LW31_ACIC1 AAA ATPase, central domain protein OS=Acid... 45.4 4e-05 tr|A0LRB8|A0LRB8_ACIC1 ATP-dependent zinc metalloprotease FtsH OS... 43.5 2e-04 tr|Q1AY82|Q1AY82_RUBXD ATPase AAA-2 OS=Rubrobacter xylanophilus (... 43.5 2e-04 sp|A0LR74|FTSH_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=A... 43.1 2e-04 tr|A1TG29|A1TG29_MYCVP ATPase AAA-2 domain protein OS=Mycolicibac... 43.1 3e-04 sp|A0JXB1|RUVB_ARTS2 Holliday junction ATP-dependent DNA helicase... 42.4 3e-04 tr|Q82QV8|Q82QV8_STRAW Putative AAA family ATPase OS=Streptomyces... 41.6 4e-04 tr|A0JR82|A0JR82_ARTS2 ATP-dependent zinc metalloprotease FtsH OS... 41.6 6e-04 tr|A0K236|A0K236_ARTS2 AAA ATPase, central domain protein OS=Arth... 41.6 6e-04 tr|Q82EE9|Q82EE9_STRAW ATP-dependent zinc metalloprotease FtsH OS... 41.6 7e-04 tr|A1TG43|A1TG43_MYCVP ATP-dependent zinc metalloprotease FtsH OS... 41.6 7e-04 tr|Q82EB8|Q82EB8_STRAW Putative ATP-dependent Clp protease OS=Str... 41.6 8e-04 sp|P9WQN3|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=M... 41.2 9e-04 tr|B0RHW4|B0RHW4_CLAMS ATP-dependent zinc metalloprotease FtsH OS... 41.2 0.001 >sp|Q820F8|CLPX_STRAW ATP-dependent Clp protease ATP-binding subunit ClpX OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=clpX PE=3 SV=1 Length=428 Score = 535 bits (1377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 260/409 (64%), Positives = 324/409 (79%), Gaps = 9/409 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ E + R LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEE-LPKPRE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG------VELGKSNILLIGPTGS 123 I L+ YV+GQE AKK L+VAVYNHYKR++ G+ G +EL KSNILL+GPTGS Sbjct 67 IYEFLEGYVVGQEAAKKALSVAVYNHYKRVQAGENGGGQSREDAIELAKSNILLLGPTGS 126 Query 124 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 GKTLLA+TLAR+L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV+KA+ GI+YI Sbjct 127 GKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKKAETGIIYI 186 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKI 243 DEIDK++RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ + Sbjct 187 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNV 246 Query 244 LFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPE 303 LFI GGAFAGL+K+I R GIGFGAT+++K + S+ + V PEDL+KFG+IPE Sbjct 247 LFIVGGAFAGLEKLIESRA-GAKGIGFGATIRSKRELESKDQ-FEDVMPEDLVKFGMIPE 304 Query 304 FIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAM 363 FIGRLPV+ +++ L EAL+QIL EP+NAL KQYQ LF L+GV+L+F EAL+AIA +A+ Sbjct 305 FIGRLPVITSVHNLDREALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAI 364 Query 364 ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 R+TGARGLR+I+E L+ MY++PS +DV +VVI V+ P LI Sbjct 365 LRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVITADVVHSNVNPTLI 413 >tr|Q1AVT0|Q1AVT0_RUBXD ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=clpX PE=3 SV=1 Length=420 Score = 524 bits (1349), Expect = 0.0, Method: Compositional matrix adjust. Identities = 260/401 (65%), Positives = 323/401 (81%), Gaps = 4/401 (1%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRN 72 L CSFCGKSQ +VRKLIAGP VYICDEC++LCN+II EE ++ LP P EI Sbjct 8 LQCSFCGKSQRQVRKLIAGPGVYICDECIELCNEIIDEEFSGPEVLKD-DDLPKPREINR 66 Query 73 HLDDYVIGQEQAKKVLAVAVYNHYKRLRNG-DTSNGVELGKSNILLIGPTGSGKTLLAET 131 L++YVIGQE+AKKVL+VAVYNHYKR++ G +T +G EL KSNILLIGPTGSGKTLLAET Sbjct 67 ILNEYVIGQEEAKKVLSVAVYNHYKRIQIGAETPDGTELQKSNILLIGPTGSGKTLLAET 126 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 LA++L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q D+DV+KA+ GI+YIDEIDKI+R Sbjct 127 LAKILNVPFAIADATALTEAGYVGEDVENILLKLIQAADFDVKKAETGIIYIDEIDKIAR 186 Query 192 KSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAF 251 K+DNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP Q+FLQ+DT ILFICGGAF Sbjct 187 KADNPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQDFLQIDTKNILFICGGAF 246 Query 252 AGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV 311 GL+ +I R+ S IGF + + + ++ S+ E+L V+PEDL+K+GLIPEF+GRLPV+ Sbjct 247 GGLEDIIRQRIGKRS-IGFSSGLDRRLEEDSD-EILRHVQPEDLLKYGLIPEFVGRLPVI 304 Query 312 ATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARG 371 +TL+ L E L++IL EPKNAL +QY+ +F + VDL F DEAL AIA++A+ R TGARG Sbjct 305 STLHSLQERDLVRILTEPKNALVRQYRQIFRYDKVDLTFTDEALTAIAEQALERGTGARG 364 Query 372 LRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 LRSI+EAALL TMY+LPS DV K V+D + +P L+ Sbjct 365 LRSILEAALLPTMYELPSRSDVTKCVVDADTVREGVRPALV 405 >sp|A1TCB3|CLPX_MYCVP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) OX=350058 GN=clpX PE=3 SV=1 Length=426 Score = 523 bits (1347), Expect = 0.0, Method: Compositional matrix adjust. Identities = 257/412 (62%), Positives = 328/412 (80%), Gaps = 8/412 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ + A + LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAD-ADDVKLDELPKPAE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-----SNGVELGKSNILLIGPTGSG 124 IR L+ YVIGQ+ AK+ LAVAVYNHYKR++ G+ S VEL KSNIL++GPTG G Sbjct 67 IREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKARDSRSEPVELAKSNILMLGPTGCG 126 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYID 184 KT LA+TLA++L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ GI+YID Sbjct 127 KTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYID 186 Query 185 EIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKIL 244 E+DKI+RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ +L Sbjct 187 EVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVL 246 Query 245 FICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 304 FI GAFAGL++++S RV G+GFGA VK+K++ ++ + A+V PEDLIKFGLIPEF Sbjct 247 FIVAGAFAGLERIVSDRV-GKRGLGFGAEVKSKAEIDTQ-DHFAEVMPEDLIKFGLIPEF 304 Query 305 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA 364 IGRLPVVA++ L +E+L+QIL +PKNAL KQY LF ++GV+LEF ++AL+AIA +A+ Sbjct 305 IGRLPVVASVTNLDKESLVQILSQPKNALVKQYTRLFEMDGVELEFAEDALEAIADQAIH 364 Query 365 RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKP 416 R TGARGLR+I+E LL MYD+PS +DV KVV+ + + P ++ KP Sbjct 365 RGTGARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVLDNVLPTIVPRKP 416 >sp|P9WPB9|CLPX_MYCTU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=clpX PE=1 SV=1 Length=426 Score = 519 bits (1336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 257/412 (62%), Positives = 323/412 (78%), Gaps = 8/412 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHE 69 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+II EE+ + A + LP P E Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAD-ADDVKLDELPKPAE 66 Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG-----VELGKSNILLIGPTGSG 124 IR L+ YVIGQ+ AK+ LAVAVYNHYKR++ G+ VEL KSNIL++GPTG G Sbjct 67 IREFLEGYVIGQDTAKRTLAVAVYNHYKRIQAGEKGRDSRCEPVELTKSNILMLGPTGCG 126 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYID 184 KT LA+TLA++L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ GI+YID Sbjct 127 KTYLAQTLAKMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYID 186 Query 185 EIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKIL 244 E+DKI+RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ +L Sbjct 187 EVDKIARKSENPSITRDVSGEGVQQALLKILEGTQASVPPQGGRKHPHQEFIQIDTTNVL 246 Query 245 FICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 304 FI GAFAGL+K+I RV G+GFGA V++K++ + A V PEDLIKFGLIPEF Sbjct 247 FIVAGAFAGLEKIIYERV-GKRGLGFGAEVRSKAE-IDTTDHFADVMPEDLIKFGLIPEF 304 Query 305 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA 364 IGRLPVVA++ L +E+L++IL EPKNAL KQY LF ++GV+LEF D+AL+AIA +A+ Sbjct 305 IGRLPVVASVTNLDKESLVKILSEPKNALVKQYIRLFEMDGVELEFTDDALEAIADQAIH 364 Query 365 RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKP 416 R TGARGLR+I+E LL MYD+PS +DV KVV+ + + P ++ KP Sbjct 365 RGTGARGLRAIMEEVLLPVMYDIPSRDDVAKVVVTKETVQDNVLPTIVPRKP 416 >sp|Q8FN57|CLPX_COREF ATP-dependent Clp protease ATP-binding subunit ClpX OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=clpX PE=3 SV=1 Length=426 Score = 518 bits (1334), Expect = 0.0, Method: Compositional matrix adjust. Identities = 259/426 (61%), Positives = 325/426 (76%), Gaps = 11/426 (3%) Query 5 RKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV-APHRERSA 63 R S LL CSFCGKSQ +V+KLIAG +VYICDEC++LCN+II EE+ + E Sbjct 3 RMQESADLLKCSFCGKSQKQVKKLIAGGAVYICDECIELCNEIIEEELGQAQGQEEEHGE 62 Query 64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNG--------VELGKSNI 115 LP P EI LD YV+GQ+QAK++L+VAVYNHYKRLR + G EL KSNI Sbjct 63 LPKPSEISAFLDKYVVGQDQAKRILSVAVYNHYKRLRAHEQIGGRRRRDEEDTELIKSNI 122 Query 116 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 175 LL+GPTGSGKT LA+TLA+LLDVPF +ADAT+LTEAGYVGEDVENI+ KLLQ D+DV++ Sbjct 123 LLLGPTGSGKTYLAQTLAKLLDVPFAIADATSLTEAGYVGEDVENILLKLLQAADFDVER 182 Query 176 AQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 235 AQRGI+YIDE+DKISRKS+NPSITRDVSGEGVQQALLK++EGTVAA+PPQGGRKHP Q+F Sbjct 183 AQRGIIYIDEVDKISRKSENPSITRDVSGEGVQQALLKILEGTVAAIPPQGGRKHPNQDF 242 Query 236 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 295 +Q+DT+ ILFI GAF+GL+K+I R G+GFG V +K D+ E ++ V PEDL Sbjct 243 IQLDTTNILFIVAGAFSGLEKIIGER-RGKKGLGFGVEVASKKDEEKE-DIFKDVRPEDL 300 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 +KFGLIPEFIGRLPVVAT+ L +E+L+++L EP+N+L KQY+ LF ++ L F D+AL Sbjct 301 VKFGLIPEFIGRLPVVATVANLDQESLVKVLTEPRNSLVKQYKRLFEMDDTLLTFTDDAL 360 Query 356 DAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 +AIA A+ RKTGARGLR+I+E L+ MYD+P +DV +VVI V G+++P LI Sbjct 361 EAIADLALERKTGARGLRAILEEILVPIMYDIPDRDDVTEVVITGEVARGEAEPELITHT 420 Query 416 PEAQQA 421 E + A Sbjct 421 AEEKTA 426 >sp|A0LSV2|CLPX_ACIC1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Acidothermus cellulolyticus (strain ATCC 43068 / DSM 8971 / 11B) OX=351607 GN=clpX PE=3 SV=1 Length=427 Score = 517 bits (1332), Expect = 0.0, Method: Compositional matrix adjust. Identities = 259/408 (63%), Positives = 315/408 (77%), Gaps = 9/408 (2%) Query 10 GKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRER-SALPTPH 68 G LL CSFCGKSQ +V+KLIAGP VYICDEC+DLCN+ E + H + LP P Sbjct 8 GDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNE--IIEEELSESHEPKFDQLPKPR 65 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS----NGVELGKSNILLIGPTGSG 124 EI LD YVIGQE AKK L+VAVYNHYKR++ G +S + VEL KSNILLIGPTG G Sbjct 66 EICEFLDQYVIGQETAKKALSVAVYNHYKRIQVGGSSRSSNDSVELAKSNILLIGPTGCG 125 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYID 184 KT LA+TLAR+L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ GI+YID Sbjct 126 KTYLAQTLARMLNVPFAIADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGIIYID 185 Query 185 EIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKIL 244 EIDKI+RKS+NPSITRDVSGEGVQQALLK++EGT A+VPPQGGRKHP QEF+Q+DT+ IL Sbjct 186 EIDKIARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQIDTTNIL 245 Query 245 FICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 304 FI GGAFAGL+K+I R+ GIGF AT+ K D + ++ + V PEDL+K+G+IPEF Sbjct 246 FIVGGAFAGLEKIIEARIGK-KGIGFTATLHGKRD-LNTADIFSHVMPEDLLKYGMIPEF 303 Query 305 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA 364 +GRLPV+ T+ L EALI+IL EPKNAL +QYQ LF L+ VDLEF D+AL+AIA +A+ Sbjct 304 VGRLPVITTVTSLDREALIRILTEPKNALVRQYQRLFELDSVDLEFTDDALEAIADQAIL 363 Query 365 RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 R TGARGLR+I+E LL MYD+PS DV +VVI V+ P L+ Sbjct 364 RGTGARGLRAIMEEVLLSVMYDIPSRTDVARVVITRDVVLNNVNPTLV 411 >sp|A0JXL2|CLPX_ARTS2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Arthrobacter sp. (strain FB24) OX=290399 GN=clpX PE=3 SV=1 Length=429 Score = 516 bits (1330), Expect = 0.0, Method: Compositional matrix adjust. Identities = 263/416 (63%), Positives = 318/416 (76%), Gaps = 18/416 (4%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LL CSFCGKSQ +VRKLIAGP VYICDEC++LCN+II EE+ EVA LP P Sbjct 7 STDLLKCSFCGKSQKQVRKLIAGPGVYICDECIELCNEIIEEELAEVA-DLGSFELPKPR 65 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-----------SNGVELGKSNILL 117 EI + L +YVIGQE AK+ LAVAVYNHYKR++ G + VE+ KSNILL Sbjct 66 EIYDFLQEYVIGQEPAKRSLAVAVYNHYKRIQAGHAPKSGSLAEGVHHDDVEIAKSNILL 125 Query 118 IGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQ 177 IGPTG GKT LA+TLAR L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV+KA+ Sbjct 126 IGPTGCGKTYLAQTLARRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKKAE 185 Query 178 RGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 237 +GI+YIDEIDKISRKS+NPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP QEF+Q Sbjct 186 QGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 245 Query 238 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATV-KAKSDKASEGELLAQVEPEDLI 296 +DT+ +LFI GAFAGL+ +I R GIGFGA + + K++ S GE++ PEDL+ Sbjct 246 IDTTNVLFIVAGAFAGLEDIIGSR-SGRKGIGFGAPLNEVKNNSDSYGEVM----PEDLL 300 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 KFGLIPEFIGRLPV+ T++ L ALIQIL PKNAL KQYQ +F L+GV+L F DEALD Sbjct 301 KFGLIPEFIGRLPVITTVSNLDRPALIQILSTPKNALVKQYQKMFQLDGVELLFDDEALD 360 Query 357 AIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 IA +A+ R TGARGLR+I+E LL M+DLPS +D+ VVI V+ ++ P +I Sbjct 361 VIADQALERGTGARGLRAIMEEVLLPVMFDLPSRDDIASVVITADVVAKKAPPTMI 416 >sp|B0RAS4|CLPX_CLAMS ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) OX=31964 GN=clpX PE=3 SV=1 Length=426 Score = 491 bits (1265), Expect = 2e-173, Method: Compositional matrix adjust. Identities = 246/412 (60%), Positives = 312/412 (76%), Gaps = 12/412 (3%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE-RSALPTP 67 S LL CSFCGKSQ +V++LIAGP VYICDECV+LCN+II E + E + LP P Sbjct 7 SADLLKCSFCGKSQKQVQQLIAGPGVYICDECVELCNEIIEERLAEASEETTGEFDLPKP 66 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT-------SNGVELGKSNILLIGP 120 EI LD+YVIGQE AK+ L+VAVYNHYKR+R T + +E+ KSNILLIGP Sbjct 67 KEIFGFLDEYVIGQEAAKRALSVAVYNHYKRVRAVSTIGPAKTVGDEIEIAKSNILLIGP 126 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TG GKT LA+TLA+ L+VPF +ADAT LTEAGYVGEDVENI+ KL+Q DYDV++A+ GI Sbjct 127 TGCGKTYLAQTLAKRLNVPFAVADATALTEAGYVGEDVENILLKLIQAADYDVKRAETGI 186 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 +YIDE+DKI+RK++NPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHP QEF+QVDT Sbjct 187 IYIDEVDKIARKAENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQVDT 246 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 + +LFI GAFAGL+ +IS R GIGFGA + K A ++ +V PEDL KFGL Sbjct 247 TNVLFIVAGAFAGLEDIISQRAGK-KGIGFGAPLHRKDLNA---DVFGEVLPEDLHKFGL 302 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVV T+ +L + AL++IL +P+NAL +QYQ +F L+GV+LEF AL++IA Sbjct 303 IPEFIGRLPVVTTVTQLDQRALMEILTKPRNALVRQYQRMFELDGVELEFEQGALESIAD 362 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLI 412 A+ R+TGARGLR+I+E L M+D+PS ++V +VVI + + P ++ Sbjct 363 LAVLRQTGARGLRAILEEVLGPIMFDIPSDDEVGRVVITRESVVQNAAPTIV 414 >tr|A0K1M3|A0K1M3_ARTS2 ATPase AAA-2 domain protein OS=Arthrobacter sp. (strain FB24) OX=290399 GN=Arth_3818 PE=3 SV=1 Length=857 Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 85/328 (26%), Positives = 144/328 (44%), Gaps = 65/328 (20%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V+GQE A ++A +V +R R G + G +G + L +GPTG GKT LA+ LA Sbjct 547 LHQRVVGQEDAVSLIAKSV----RRNRTGMGAAGRPIG--SFLFLGPTGVGKTELAKALA 600 Query 134 RLL------DVPFTMAD------ATTLTEA--GYVGEDVENIIQKLLQKCDYDVQKAQRG 179 L + F M++ + L A GYVG D + + +++ Y Sbjct 601 GSLFGSEDSMIRFDMSEFGERHTVSRLVGAPPGYVGYDEAGQLTERVRRNPYS------- 653 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 IV +DE++K D ++ V +G +L +G GR + + + Sbjct 654 IVLLDEVEKA--HPDVFNLLLQVLDDG------RLTDGH--------GRTVDFRNTVVIM 697 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 TS + G F L T +G FG S+KA +LA+ ++ Sbjct 698 TSNL----GSEF--LASKAGPTGFTAAGDAFG------SEKALRDRVLAR------LRES 739 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 + PEF+ R+ + +L L QI++ + + A +G+ L ++A+D IA Sbjct 740 MRPEFLNRIDEIVLFRKLDRAQLRQIVR----LMLDETDARLRSQGIGLVVSEDAVDWIA 795 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDL 387 ++ + GAR +R +++ L D + DL Sbjct 796 ERGYEPEYGARPMRRVIQRELDDRIADL 823 >tr|Q1AU05|Q1AU05_RUBXD ATPase AAA-2 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=Rxyl_2179 PE=3 SV=1 Length=834 Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 79/328 (24%), Positives = 137/328 (42%), Gaps = 67/328 (20%) Query 74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133 L V+GQ++A K ++ ++ L++ + +G + + +GPTG GKT LA TLA Sbjct 515 LHGRVVGQDEAIKAVSRSIRRTMAGLKDPNRPSG------SFVFLGPTGVGKTELARTLA 568 Query 134 RLL----------DVPFTMADATTL----TEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 179 L D+ M T + GYVG D + + +++ Y V Sbjct 569 EYLFGDQDAMIRLDMSEYMERHTVSRLVGSPPGYVGYDEGGQLTEQVRRRPYSV------ 622 Query 180 IVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVD 239 V DEI+K +P + LL+++E + GR VD Sbjct 623 -VLFDEIEKA-----HPDVF---------NILLQILED--GQLTDAQGR--------TVD 657 Query 240 TSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG 299 ++ I V + + +GFGA + S K E+ ++V E ++ Sbjct 658 FKNVVLIM------TSNVGAQHINKTKTLGFGAGEEGLSYK----EMKSRVTSE--LRKI 705 Query 300 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIA 359 PE + R+ + ++L E + QI++ L +Q V LEF EALD +A Sbjct 706 FRPELLNRIDEIIVFHKLEREHVRQIIEIQVKRLREQLAE----RNVTLEFTPEALDKLA 761 Query 360 KKAMARKTGARGLRSIVEAALLDTMYDL 387 ++ GAR L+ +++ + D M ++ Sbjct 762 EEGYDPAFGARPLKRVLQRMVEDPMSEM 789 >tr|Q8FMH5|Q8FMH5_COREF Putative endopeptidase Clp ATP-binding chain C OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 PE=4 SV=1 Length=927 Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 79/357 (22%), Positives = 145/357 (41%), Gaps = 69/357 (19%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + L +IGQ++A K ++ A+ L++ +G + + GP+G GKT L+ Sbjct 528 MEEELHKRIIGQDEAVKAVSRAIRRTRAGLKDPKRPSG------SFIFAGPSGVGKTELS 581 Query 130 ETLARLL---DVPFTMAD---------ATTLTEA--GYVG-EDVENIIQKLLQKCDYDVQ 174 + LA L D D A+ L A GYVG E+ + +K V+ Sbjct 582 KALAEFLFGDDDSLIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEK--------VR 633 Query 175 KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 + +V DEI+K ++ + LL+++E G Q Sbjct 634 RKPFSVVLFDEIEKAHKE--------------IYNTLLQVLE--------DGRLTDGQGR 671 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 + + ++F + K + G+GF + + SD A + +V E Sbjct 672 IVDFKNTVLIFTSNLGTQDISKAV--------GLGFSGSNETDSD-AQYDRMKNKVHDE- 721 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 +K PEF+ R+ + ++L+ E +IQ+++ L + + + +E D+A Sbjct 722 -LKKHFRPEFLNRIDEIVVFHQLTREQIIQMVE----LLIGRVSRALADKDMGIELTDKA 776 Query 355 LDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDV---EKVVIDESVIDGQSK 408 +A + GAR LR ++ + D M + ++ E V +D DG+SK Sbjct 777 KALLASRGFDPVLGARPLRRTIQREIEDAMSEKILFGEIGAGEIVTVDVDGWDGESK 833 >tr|A0LW31|A0LW31_ACIC1 AAA ATPase, central domain protein OS=Acidothermus cellulolyticus (strain ATCC 43068 / DSM 8971 / 11B) OX=351607 GN=Acel_1869 PE=4 SV=1 Length=691 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query 67 PHEIRNHLDDYV----IGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG 122 P +I LDD V I E + V + + R G G IL GP G Sbjct 100 PEQIDVRLDDVVGIDVIKAEVVRSVNLFLAHRTFSRDMGGRPRRG-------ILFEGPPG 152 Query 123 SGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVY 182 +GKT LA+ +A+ +VPF A AT+ ++G G + ++ + +K I + Sbjct 153 TGKTYLAKAIAKEANVPFLFATATSF-QSGLQGA-TQRKVRAFFRALRATARKEGGAIGF 210 Query 183 IDEIDKI 189 IDE D + Sbjct 211 IDEFDAL 217 >tr|A0LRB8|A0LRB8_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=Acidothermus cellulolyticus (strain ATCC 43068 / DSM 8971 / 11B) OX=351607 GN=ftsH PE=3 SV=1 Length=654 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L Q+ + Sbjct 187 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFQQAKENAP 244 Query 175 KAQRGIVYIDEIDKISR 191 IV+IDEID + R Sbjct 245 ----AIVFIDEIDAVGR 257 >tr|Q1AY82|Q1AY82_RUBXD ATPase AAA-2 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=Rxyl_0676 PE=3 SV=1 Length=886 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 77/339 (23%), Positives = 141/339 (42%), Gaps = 79/339 (23%) Query 78 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL- 136 V+GQ++A + +A A+ +R R G + +G + L +GPTG GKT LA TLA L Sbjct 582 VVGQDEAVEAVAEAI----RRARAGLSDPNRPIG--SFLFLGPTGVGKTELARTLAEALF 635 Query 137 --DVPFTMADATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 183 + D + E GYVG + + + +++ Y V + + Sbjct 636 GDEAAMVRIDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYSV-------LLL 688 Query 184 DEIDKISRKSDNPSITRDVSGEGVQQALLKLI-EGTVAAVPPQGGRKHPQQEFLQVDTSK 242 DEI+K +P + LL+++ EG + GR VD Sbjct 689 DEIEKA-----HPDVF---------NLLLQILDEGRLTDAQ---GRT--------VDFKN 723 Query 243 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 302 + I G +++ +H + K E + Q+ ++ P Sbjct 724 TVIIMTSNL-GAERIQAH-------------ARRKESFEELKEDMMQI-----VRRSFRP 764 Query 303 EFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKA 362 EFI R+ + LS E +++I + ++ +A + +++EF D A++ IA + Sbjct 765 EFINRIDEIIIFRALSREQILEIARLLLERTRRRLKA----QDIEVEFTDAAVEHIAGEG 820 Query 363 MARKTGARGLRSIVEAALLDTMYDL---PSMEDVEKVVI 398 + GAR LR ++ + + + L S+E ++VV+ Sbjct 821 FDPEFGARPLRRTIQRQVDNELSRLLLEGSVEPGDRVVV 859 >sp|A0LR74|FTSH_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=Acidothermus cellulolyticus (strain ATCC 43068 / DSM 8971 / 11B) OX=351607 GN=ftsH PE=3 SV=1 Length=666 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (8%) Query 114 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV 173 +L++GP G+GKTL+A +A VPF ++ E +VG ++ L ++ Sbjct 214 GVLMVGPPGTGKTLMARAVAGEAGVPFLSVTGSSFVEM-FVGVGASR-VRDLFEEA---- 267 Query 174 QKAQRGIVYIDEIDKISRK 192 +K IV++DEID I ++ Sbjct 268 RKHAPCIVFVDEIDAIGQR 286 >tr|A1TG29|A1TG29_MYCVP ATPase AAA-2 domain protein OS=Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) OX=350058 GN=Mvan_5358 PE=4 SV=1 Length=847 Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 77/355 (22%), Positives = 148/355 (42%), Gaps = 72/355 (20%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + + L +IGQE A K ++ A+ L++ +G + + GP+G GKT L+ Sbjct 510 MEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSG------SFIFAGPSGVGKTELS 563 Query 130 ETLARLL---DVPFTMAD---------ATTLTEA--GYVG-EDVENIIQKLLQKCDYDVQ 174 + LA L D D A+ L A GYVG E+ + +K V+ Sbjct 564 KALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEK--------VR 615 Query 175 KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 + +V DEI+K ++ + +LL+++E G Q Sbjct 616 RKPFSVVLFDEIEKAHQE--------------IYNSLLQVLE--------DGRLTDGQGR 653 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 + + ++F + + K + G+GF + + E + Q + D Sbjct 654 TVDFKNTVLIFTSNLGTSDISKAV--------GLGF-----TQGGGENNYERMKQ-KVHD 699 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 +K PEF+ R+ + ++L+++ +I+++ ++KQ A + + +E D+A Sbjct 700 ELKKHFRPEFLNRIDDIIVFHQLTQDEIIKMVDLMIGRVSKQLAA----KDMTMELTDKA 755 Query 355 LDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDV---EKVVIDESVIDGQ 406 +AK+ GAR LR ++ + D + + E+V + V +D DG+ Sbjct 756 KSLLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQLVTVDVEGWDGE 810 >sp|A0JXB1|RUVB_ARTS2 Holliday junction ATP-dependent DNA helicase RuvB OS=Arthrobacter sp. (strain FB24) OX=290399 GN=ruvB PE=3 SV=1 Length=362 Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 60/123 (49%), Gaps = 25/123 (20%) Query 72 NHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAET 131 +L D+V GQ + +K L++ + R R+ D ++LL GP G GKT L+ Sbjct 25 KNLHDFV-GQHRVRKQLSLVLEASRMRGRSAD----------HVLLSGPPGLGKTTLSMI 73 Query 132 LARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISR 191 +A ++ P ++ + AG D+ I+ L ++ ++++DEI ++SR Sbjct 74 IAAEMNAPLRISSGPAIQHAG----DLAAILSSL----------SEGEVLFLDEIHRMSR 119 Query 192 KSD 194 ++ Sbjct 120 PAE 122 >tr|Q82QV8|Q82QV8_STRAW Putative AAA family ATPase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=SAVERM_387 PE=4 SV=1 Length=261 Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/128 (27%), Positives = 58/128 (45%), Gaps = 11/128 (9%) Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKS---NILLIGPTGSGKTL 127 R H D V+ ++Q + + +A + + GD G + L GP+G+GKT Sbjct 3 RAHWADLVLPEQQTEVLRRMAGHVRHGATVFGDWGFGERTNRGQGVTALFSGPSGTGKTF 62 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 +E LA L + D + + YVGE +N+ Q +D ++ ++ DE D Sbjct 63 ASEVLAHELGLDLYRVDLSAVVNK-YVGETEKNLRQV------FDAAESGGSLLLFDEAD 115 Query 188 KI-SRKSD 194 + R+SD Sbjct 116 ALFGRRSD 123 >tr|A0JR82|A0JR82_ARTS2 ATP-dependent zinc metalloprotease FtsH OS=Arthrobacter sp. (strain FB24) OX=290399 GN=ftsH PE=3 SV=1 Length=689 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 205 VLLYGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASR-VRDLFEQA----K 258 Query 175 KAQRGIVYIDEIDKISR 191 + I+++DEID + R Sbjct 259 ASSPAIIFVDEIDAVGR 275 >tr|A0K236|A0K236_ARTS2 AAA ATPase, central domain protein OS=Arthrobacter sp. (strain FB24) OX=290399 GN=Arth_3981 PE=3 SV=1 Length=471 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/105 (29%), Positives = 52/105 (50%), Gaps = 18/105 (17%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE--AGYVGEDVENIIQKLLQKCDYD 172 ++L GP G+GKT A+ +A L+ PF + L G G L++ + Sbjct 231 VVLFGPPGTGKTTFAKAIASRLEWPFVEVFPSRLAADPKGLAGA---------LRETFLE 281 Query 173 VQKAQRGIVYIDEIDKIS--RKSDNPSITRDVSGEGVQQALLKLI 215 + + + +V+IDE+++I+ R + PS +GV LLK+I Sbjct 282 IAELEHAVVFIDEVEEIASQRSGEPPSPL-----QGVTNELLKII 321 >tr|Q82EE9|Q82EE9_STRAW ATP-dependent zinc metalloprotease FtsH OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=ftsH PE=3 SV=1 Length=664 Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 196 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQAKANAP 253 Query 175 KAQRGIVYIDEIDKISR 191 IV++DEID + R Sbjct 254 ----AIVFVDEIDAVGR 266 >tr|A1TG43|A1TG43_MYCVP ATP-dependent zinc metalloprotease FtsH OS=Mycolicibacterium vanbaalenii (strain DSM 7251 / JCM 13017 / BCRC 16820 / KCTC 9966 / NRRL B-24157 / PYR-1) OX=350058 GN=ftsH PE=3 SV=1 Length=781 Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 199 VLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEQA----K 252 Query 175 KAQRGIVYIDEIDKISRK 192 + I+++DEID + R+ Sbjct 253 QNSPCIIFVDEIDAVGRQ 270 >tr|Q82EB8|Q82EB8_STRAW Putative ATP-dependent Clp protease OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=clpC2 PE=4 SV=1 Length=841 Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 83/380 (22%), Positives = 153/380 (40%), Gaps = 80/380 (21%) Query 70 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 129 + + L VIGQ+ A K L+ A+ L++ G + + GP+G GKT L+ Sbjct 506 MEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGG------SFIFAGPSGVGKTELS 559 Query 130 ETLARLL----DVPFTMADATTLTEA-----------GYVG-EDVENIIQKLLQKCDYDV 173 + LA L D ++ D + +E GYVG E+ + +K V Sbjct 560 KALAEFLFGDEDALISL-DMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEK--------V 610 Query 174 QKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ 233 ++ +V DE++K +P I +LL+++E GR Q Sbjct 611 RRKPFSVVLFDEVEKA-----HPDIF---------NSLLQILED---------GRLTDSQ 647 Query 234 EFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPE 293 + VD + I D + G +GF A KS+ +A Sbjct 648 GRV-VDFKNTVIIMTTNLGTRD------ISKGFNLGFAAQGDTKSNYERMKNKVA----- 695 Query 294 DLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDE 353 D +K PEF+ R+ V +L+++ +++I+ + + + + +E Sbjct 696 DELKQHFRPEFLNRVDDVVVFPQLTQDDILRIV----DLMITKVDERLKDRDMGIELAQS 751 Query 354 ALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE--KVVIDESVIDGQSKPLL 411 A + +AKK GAR LR ++ + DT+ + ++ +V+ ++ +G++K Sbjct 752 AKELLAKKGYDPVLGARPLRRTIQREIEDTLSEKILFGELRPGHIVVVDTEGEGETKTFT 811 Query 412 IYGK--------PEAQQASG 423 G+ P +QA+G Sbjct 812 FRGEEKSALPDVPPIEQAAG 831 >sp|P9WQN3|FTSH_MYCTU ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ftsH PE=1 SV=1 Length=760 Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 199 VLLYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEM-FVGVGASR-VRDLFEQA----K 252 Query 175 KAQRGIVYIDEIDKISRK 192 + I+++DEID + R+ Sbjct 253 QNSPCIIFVDEIDAVGRQ 270 >tr|B0RHW4|B0RHW4_CLAMS ATP-dependent zinc metalloprotease FtsH OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) OX=31964 GN=ftsH PE=3 SV=1 Length=666 Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL GP G+GKTLLA +A VPF + E +VG ++ L ++ + Sbjct 200 VLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEM-FVGVGASR-VRDLFEQA----K 253 Query 175 KAQRGIVYIDEIDKISR 191 + I+++DEID + R Sbjct 254 QNAPAIIFVDEIDAVGR 270 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2469068525 Database: proteomes.fasta Posted date: Oct 19, 2022 2:31 AM Number of letters in database: 11,008,182 Number of sequences in database: 33,307 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40