BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all.fasta 15,098 sequences; 4,607,251 total letters Query= sp|P50866|CLPX_BACSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacillus subtilis (strain 168) GN=clpX PE=2 SV=3 Length=420 Score E Sequences producing significant alignments: (Bits) Value sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding sub... 712 0.0 sp|Q8Y7K9|CLPX_LISMO ATP-dependent Clp protease ATP-binding sub... 683 0.0 sp|Q8CNY5|CLPX_STAES ATP-dependent Clp protease ATP-binding sub... 609 0.0 sp|Q6GG31|CLPX_STAAR ATP-dependent Clp protease ATP-binding sub... 607 0.0 sp|B2UX12|CLPX_CLOBA ATP-dependent Clp protease ATP-binding sub... 593 0.0 tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding s... 560 0.0 tr|J7M389|J7M389_STRP1 ATP-dependent Clp protease ATP-binding s... 547 0.0 sp|P63793|CLPX_STRP1 ATP-dependent Clp protease ATP-binding sub... 547 0.0 sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU... 101 7e-24 sp|Q8CPH0|HSLU_STAES ATP-dependent protease ATPase subunit HslU... 99.0 7e-23 sp|Q8Y7J8|HSLU_LISMO ATP-dependent protease ATPase subunit HslU... 97.8 2e-22 sp|Q6GHI1|HSLU_STAAR ATP-dependent protease ATPase subunit HslU... 97.8 2e-22 tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subuni... 65.9 7e-12 sp|Q6GDQ0|CLPL_STAAR ATP-dependent Clp protease ATP-binding sub... 55.1 2e-08 sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding sub... 53.9 5e-08 tr|Q8Y8B1|Q8Y8B1_LISMO ATP-dependent protease OS=Listeria monoc... 52.4 1e-07 sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding sub... 52.4 1e-07 tr|Q8YAB6|Q8YAB6_LISMO Endopeptidase Clp ATP-binding chain C OS... 52.4 1e-07 tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding s... 51.2 3e-07 tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH ... 50.4 5e-07 tr|J7MBF9|J7MBF9_STRP1 Negative regulator of genetic competence... 46.2 1e-05 tr|Q99XR9|Q99XR9_STRP1 Putative endopeptidase Clp ATP-binding c... 46.2 1e-05 tr|J7M6I1|J7M6I1_STRP1 ATP-dependent zinc metalloprotease FtsH ... 45.1 2e-05 tr|Q9A200|Q9A200_STRP1 ATP-dependent zinc metalloprotease FtsH ... 45.1 2e-05 tr|B0S3J0|B0S3J0_FINM2 Chaperone protein ClpB OS=Finegoldia mag... 45.1 2e-05 sp|B2V338|RUVB_CLOBA Holliday junction ATP-dependent DNA helica... 42.7 1e-04 sp|Q6GGZ9|Y1421_STAAR Uncharacterized protein SAR1421 OS=Staphy... 42.0 1e-04 tr|Q5L3T1|Q5L3T1_GEOKA ATP-dependent zinc metalloprotease FtsH ... 42.0 2e-04 tr|Q8YAC6|Q8YAC6_LISMO ATP-dependent zinc metalloprotease FtsH ... 41.6 3e-04 sp|Q8Y6Z8|RUVB_LISMO Holliday junction ATP-dependent DNA helica... 40.8 3e-04 tr|B0S222|B0S222_FINM2 ATP-dependent zinc metalloprotease FtsH ... 40.8 5e-04 sp|Q8CP85|Y1092_STAES Uncharacterized protein SE_1092 OS=Staphy... 39.3 9e-04 tr|A0A0H2VIV0|A0A0H2VIV0_STAES ATP-dependent zinc metalloprotea... 40.0 0.001 > sp|Q5KWJ9|CLPX_GEOKA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Geobacillus kaustophilus (strain HTA426) GN=clpX PE=3 SV=1 Length=421 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/421 (86%), Positives = 393/421 (93%), Gaps = 1/421 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELG EEE EFKD Sbjct 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGNEEEFEFKD 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGS 120 VPKP EIREIL+EYVIGQD+AKKSLAVAVYNHYKRINS SK+DDVELSKSNI +IGPTGS Sbjct 61 VPKPLEIREILDEYVIGQDEAKKSLAVAVYNHYKRINSGSKIDDVELSKSNILMIGPTGS 120 Query 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYI 180 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE+AEKGIIYI Sbjct 121 GKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVERAEKGIIYI 180 Query 181 DEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI 240 DEIDK+ARKSENPSITRDVSGEGVQQALLKILEGT+ASVPPQGGRKHPHQEFIQIDTTNI Sbjct 181 DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQEFIQIDTTNI 240 Query 241 LFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIG 300 LFICGGAFDGIE IIKRRLG+KVIGFGA+ D+++++LLSKVLPEDLL+FGLIPEFIG Sbjct 241 LFICGGAFDGIEPIIKRRLGKKVIGFGAEMNQTDVDEKNLLSKVLPEDLLKFGLIPEFIG 300 Query 301 RLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERK 360 RLPVI +LE LDE+AL+ ILTKPKNA+VKQ++KMLELD VELEFEE AL EIAKKAIERK Sbjct 301 RLPVITTLEPLDEQALIDILTKPKNAIVKQYQKMLELDGVELEFEEAALREIAKKAIERK 360 Query 361 TGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVS-QDKTS 419 TGARGLRSIIEGIMLDVMFELPSR+D++KC+IT TV +PP L+ DGT + + KTS Sbjct 361 TGARGLRSIIEGIMLDVMFELPSREDVQKCIITLDTVRGTKPPTLIRHDGTVIELERKTS 420 Query 420 A 420 A Sbjct 421 A 421 > sp|Q8Y7K9|CLPX_LISMO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpX PE=3 SV=1 Length=419 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/421 (82%), Positives = 381/421 (90%), Gaps = 3/421 (1%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFN+EKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELC EI+EEELG E V+F + Sbjct 1 MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCNEIIEEELGISEFVDFGE 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSN-SKVDDVELSKSNISLIGPTG 119 VPKPQEIR IL++YVIGQ++AKK+LAVAVYNHYKRINSN +K D+VELSKSNI LIGPTG Sbjct 61 VPKPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETKEDEVELSKSNICLIGPTG 120 Query 120 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 179 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQ+ADYDVEKAEKGIIY Sbjct 121 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQSADYDVEKAEKGIIY 180 Query 180 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 239 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE IQIDT N Sbjct 181 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQELIQIDTGN 240 Query 240 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 299 ILFI GGAFDGIEQI+K R+G+KVIGFG DN A + E LS+V+PEDLL+FGLIPEFI Sbjct 241 ILFIVGGAFDGIEQIVKNRMGEKVIGFGTDN-AKLKDDETYLSRVVPEDLLKFGLIPEFI 299 Query 300 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 359 GRLPVIA+LE+LDE ALV+ILT+PKNALVKQ+K+MLELD+VELEFE AL EIAK+AIER Sbjct 300 GRLPVIATLEQLDEAALVSILTEPKNALVKQYKRMLELDDVELEFEPTALIEIAKEAIER 359 Query 360 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 419 KTGARGLRSIIE IML+VMFE+PSRDDI KC+IT E P+L L+DG+ + KTS Sbjct 360 KTGARGLRSIIEQIMLEVMFEIPSRDDITKCIITEKAARGEEEPQLQLEDGS-IIPIKTS 418 Query 420 A 420 A Sbjct 419 A 419 > sp|Q8CNY5|CLPX_STAES ATP-dependent Clp protease ATP-binding subunit ClpX OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpX PE=3 SV=1 Length=420 Score = 609 bits (1570), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/421 (72%), Positives = 357/421 (85%), Gaps = 2/421 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFNE++ LKCSFCGK QDQV+KLVAG GVYIC+ECIELC+EIVEEEL F + Sbjct 1 MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEGFTE 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS-NSKVDDVELSKSNISLIGPTG 119 +P P+EI + LNEYVIGQ++AKKSLAVAVYNHYKRI DDVEL KSNI+LIGPTG Sbjct 61 LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTG 120 Query 120 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 179 SGKTLLAQTLA+ LNVPFAIADATSLTEAGYVG+DVENILL+LIQAAD+D++KAEKGIIY Sbjct 121 SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY 180 Query 180 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 239 +DEIDK+ARKSEN SITRDVSGEGVQQALLKILEGT ASVPPQGGRKHP+QE IQIDTTN Sbjct 181 VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQIDTTN 240 Query 240 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 299 ILFI GGAFDGI+++IKRRLG+KVIGF A N+A ++E LL ++ PEDL +GLIPEFI Sbjct 241 ILFILGGAFDGIDEVIKRRLGEKVIGF-ASNEADKYDEEALLEQIRPEDLQSYGLIPEFI 299 Query 300 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 359 GR+P++A+LE LD AL ILT+PKNALVKQ+ KMLELDNVELEF EEALS I++KAIER Sbjct 300 GRVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKAIER 359 Query 360 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 419 KTGARGLRSIIE ++D+M+++PS +++ K VIT T+ P L +G ++++KTS Sbjct 360 KTGARGLRSIIEEALIDIMYDVPSSENVSKVVITEQTINEEIEPELYDDEGNLINKNKTS 419 Query 420 A 420 A Sbjct 420 A 420 > sp|Q6GG31|CLPX_STAAR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Staphylococcus aureus (strain MRSA252) GN=clpX PE=3 SV=1 Length=420 Score = 607 bits (1566), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/421 (71%), Positives = 356/421 (85%), Gaps = 2/421 (0%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKD 60 MFKFNE++ LKCSFCGK QDQV+KLVAG GVYIC+ECIELC+EIVEEEL + Sbjct 1 MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITE 60 Query 61 VPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINS-NSKVDDVELSKSNISLIGPTG 119 +P P+EI + LNEYVIGQ++AKKSLAVAVYNHYKRI K DDVEL KSNI+LIGPTG Sbjct 61 LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTG 120 Query 120 SGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIY 179 SGKTLLAQTLA+ LNVPFAIADATSLTEAGYVG+DVENILL+LIQAAD+D++KAEKGIIY Sbjct 121 SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY 180 Query 180 IDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTN 239 +DEIDK+ARKSEN SITRDVSGEGVQQALLKILEGT ASVPPQGGRKHP+QE IQIDTTN Sbjct 181 VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN 240 Query 240 ILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFI 299 ILFI GGAFDGIE++IKRRLG+KVIGF + N+A +++ LL+++ PEDL +GLIPEFI Sbjct 241 ILFILGGAFDGIEEVIKRRLGEKVIGFSS-NEADKYDEQALLAQIRPEDLQAYGLIPEFI 299 Query 300 GRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIER 359 GR+P++A+LE LD AL ILT+PKNALVKQ+ KMLELD+V+LEF EEALS I++KAIER Sbjct 300 GRVPIVANLETLDVTALKNILTQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIER 359 Query 360 KTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLKDGTEVSQDKTS 419 KTGARGLRSIIE ++D+MF++PS +++ K VIT T+ P L +G ++ KTS Sbjct 360 KTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEETEPELYDAEGNLINNSKTS 419 Query 420 A 420 A Sbjct 420 A 420 > sp|B2UX12|CLPX_CLOBA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=clpX PE=3 SV=1 Length=429 Score = 593 bits (1530), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/409 (71%), Positives = 356/409 (87%), Gaps = 8/409 (2%) Query 1 MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEF-- 58 M K++E+K QLKCSFCGKTQDQV++L+AGPGVYICDECI+LC+EI+ +E EE VEF Sbjct 1 MAKYDEKK-QLKCSFCGKTQDQVKRLIAGPGVYICDECIDLCSEIIADEF--EETVEFDT 57 Query 59 KDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPT 118 K VPKP EI++ L+ YVIGQ++AKKSL+VAVYNHYKRIN+N + DVELSKSNI L+GPT Sbjct 58 KSVPKPNEIKQYLDSYVIGQERAKKSLSVAVYNHYKRINTNKQDTDVELSKSNILLLGPT 117 Query 119 GSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGII 178 GSGKTLLAQTLA++LNVPFAIADAT+LTEAGYVGEDVENILLKLIQ ADYDVE+AE+GII Sbjct 118 GSGKTLLAQTLAKVLNVPFAIADATTLTEAGYVGEDVENILLKLIQNADYDVERAERGII 177 Query 179 YIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTT 238 YIDEIDK+ARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI+T+ Sbjct 178 YIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQINTS 237 Query 239 NILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKE--DLLSKVLPEDLLRFGLIP 296 NILFICGGAFDG+++II+ R + +GFGA+ + EK+ LL +++P DLL+FGLIP Sbjct 238 NILFICGGAFDGVDKIIENRTRKSSMGFGAEIQGKH-EKDIGKLLKEIMPGDLLKFGLIP 296 Query 297 EFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKA 356 EF+GRLP++ +LE LD++AL+ ILTKPKNALVKQ+KK+ ELD+VELEF EAL+ IA++A Sbjct 297 EFVGRLPILVTLESLDKDALINILTKPKNALVKQYKKLFELDDVELEFNNEALTSIAEEA 356 Query 357 IERKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 405 IERKTGARGLR+IIE +M ++M+E+PS + I K +IT + E P++ Sbjct 357 IERKTGARGLRAIIEEMMTEIMYEIPSDEQITKVIITEECIKDKENPQV 405 > tr|B0S2N5|B0S2N5_FINM2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Finegoldia magna (strain ATCC 29328) GN=clpX PE=3 SV=1 Length=411 Score = 560 bits (1442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 266/402 (66%), Positives = 343/402 (85%), Gaps = 2/402 (0%) Query 9 GQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFK-DVPKPQEI 67 Q KCSFCGK+QD+V+KL+AGPGV+ICDEC+ LC I+EEE + ++ + D+PKP EI Sbjct 6 NQYKCSFCGKSQDEVKKLIAGPGVFICDECVSLCNSIIEEEFKDVDNIQERIDLPKPIEI 65 Query 68 REILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQ 127 +++L++YVI Q++ KK+LAVAVYNHYKRINSN +DVEL KSNI L+GPTGSGKTLLA+ Sbjct 66 KDVLDDYVIKQEEGKKALAVAVYNHYKRINSNLMNNDVELQKSNILLVGPTGSGKTLLAE 125 Query 128 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA 187 TLA+IL+VPFAIADATSLTEAGYVGEDVEN++LKLIQAADYD+EKAE+GIIYIDEIDK+ Sbjct 126 TLAKILDVPFAIADATSLTEAGYVGEDVENVILKLIQAADYDIEKAEQGIIYIDEIDKIT 185 Query 188 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA 247 RKSENPSITRDVSGEGVQQALLKI+EGT+ +VPPQGGRKHP+QE+IQ+DT NILFI GGA Sbjct 186 RKSENPSITRDVSGEGVQQALLKIVEGTICNVPPQGGRKHPNQEYIQVDTRNILFIVGGA 245 Query 248 FDGIEQIIKRRLGQKVIGFGADNKAADLEK-EDLLSKVLPEDLLRFGLIPEFIGRLPVIA 306 F+G+E+II+RR K IGFGAD + +K +L PEDL++FGLIPEF+GR+PV+ Sbjct 246 FEGLEKIIERRTETKSIGFGADLGDNEHKKISELFKDFRPEDLIKFGLIPEFVGRIPVLV 305 Query 307 SLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGL 366 +L++LDE+AL+ IL +PKNA++KQ++++ ++D+VELEF+E+AL IAK A +RKTGARGL Sbjct 306 TLDELDEQALIRILLEPKNAVIKQYQELFKMDDVELEFDEDALKAIAKLAYDRKTGARGL 365 Query 367 RSIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRLLLK 408 R+IIE ++++MFELPSR DI K ++T +V G+ P+L+ K Sbjct 366 RTIIEKSLMNIMFELPSRQDISKVILTKESVLEGKDPKLVFK 407 > tr|J7M389|J7M389_STRP1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Streptococcus pyogenes M1 476 GN=clpX PE=3 SV=2 Length=409 Score = 547 bits (1409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 264/398 (66%), Positives = 332/398 (83%), Gaps = 3/398 (1%) Query 10 QLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIRE 69 ++ CSFCGK+QD V+K++AG V+IC+EC+ L EI++EEL E + +VPKP+E+ + Sbjct 10 KVYCSFCGKSQDDVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLD 69 Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRIN--SNSKVDDVELSKSNISLIGPTGSGKTLLAQ 127 +LN+YV+GQD+AK++L+VAVYNHYKR++ + DDV+L KSNI +IGPTGSGKT LAQ Sbjct 70 VLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQ 129 Query 128 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA 187 TLA+ LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADY+VE+AE+GIIY+DEIDK+A Sbjct 130 TLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYVDEIDKIA 189 Query 188 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA 247 +K EN SITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP+QE IQIDT NILFI GGA Sbjct 190 KKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGA 249 Query 248 FDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIAS 307 FDGIE+I+K+RLG+KVIGFG +++ D + + +++ ED+ +FGLIPEFIGRLPV+A+ Sbjct 250 FDGIEEIVKQRLGEKVIGFGQNSRKID-DNASYMQEIISEDIQKFGLIPEFIGRLPVVAA 308 Query 308 LEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLR 367 LE+L+ L+ ILT+P+NALVKQ++ +L D VEL F++EAL IA KAIERKTGARGLR Sbjct 309 LEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLR 368 Query 368 SIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 405 SIIE MLD+MFE+PS++D+ K IT A V P L Sbjct 369 SIIEETMLDIMFEIPSQEDVTKVRITKAAVEGKSKPVL 406 > sp|P63793|CLPX_STRP1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Streptococcus pyogenes serotype M1 GN=clpX PE=3 SV=1 Length=409 Score = 547 bits (1409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 264/398 (66%), Positives = 332/398 (83%), Gaps = 3/398 (1%) Query 10 QLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIRE 69 ++ CSFCGK+QD V+K++AG V+IC+EC+ L EI++EEL E + +VPKP+E+ + Sbjct 10 KVYCSFCGKSQDDVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLD 69 Query 70 ILNEYVIGQDQAKKSLAVAVYNHYKRIN--SNSKVDDVELSKSNISLIGPTGSGKTLLAQ 127 +LN+YV+GQD+AK++L+VAVYNHYKR++ + DDV+L KSNI +IGPTGSGKT LAQ Sbjct 70 VLNQYVVGQDRAKRALSVAVYNHYKRVSFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQ 129 Query 128 TLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVA 187 TLA+ LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADY+VE+AE+GIIY+DEIDK+A Sbjct 130 TLAKSLNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYNVERAERGIIYVDEIDKIA 189 Query 188 RKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNILFICGGA 247 +K EN SITRDVSGEGVQQALLKI+EGTVASVPPQGGRKHP+QE IQIDT NILFI GGA Sbjct 190 KKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGA 249 Query 248 FDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPEFIGRLPVIAS 307 FDGIE+I+K+RLG+KVIGFG +++ D + + +++ ED+ +FGLIPEFIGRLPV+A+ Sbjct 250 FDGIEEIVKQRLGEKVIGFGQNSRKID-DNASYMQEIISEDIQKFGLIPEFIGRLPVVAA 308 Query 308 LEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAIERKTGARGLR 367 LE+L+ L+ ILT+P+NALVKQ++ +L D VEL F++EAL IA KAIERKTGARGLR Sbjct 309 LEQLNTSDLIQILTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLR 368 Query 368 SIIEGIMLDVMFELPSRDDIEKCVITGATVTHGEPPRL 405 SIIE MLD+MFE+PS++D+ K IT A V P L Sbjct 369 SIIEETMLDIMFEIPSQEDVTKVRITKAAVEGKSKPVL 406 > sp|Q5L0N1|HSLU_GEOKA ATP-dependent protease ATPase subunit HslU OS=Geobacillus kaustophilus (strain HTA426) GN=hslU PE=3 SV=1 Length=465 Score = 101 bits (252), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 78/225 (35%), Positives = 113/225 (50%), Gaps = 56/225 (25%) Query 174 EKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFI 233 + GII+IDEIDK+AR S S + DVS EGVQ+ +L I+EG+ ++ Sbjct 270 QSGIIFIDEIDKIAR-SGAVSGSADVSREGVQRDILPIVEGSTVMT-----------KYG 317 Query 234 QIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFG 293 + T +ILFI GAF ++K P DL Sbjct 318 PVKTDHILFIAAGAFH-------------------------------MAK--PSDL---- 340 Query 294 LIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 353 IPE GR P+ L KL + V IL +P NAL+KQ++ +L + + LEF ++A+ +IA Sbjct 341 -IPELQGRFPIRVELAKLSVDDFVRILVEPNNALIKQYQALLATEGISLEFSDDAIRKIA 399 Query 354 KKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCVIT 393 + A E GAR L +I+E ++ D++FE P I+K VIT Sbjct 400 EVAFEVNQTTDNIGARRLHTILEKLLEDLLFEAPD-IGIDKVVIT 443 Score = 92.8 bits (229), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 44/103 (43%), Positives = 73/103 (71%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L+++++GQ +AKK++A+A+ N Y+R + K+ D E+ NI +IGPTG GKT Sbjct 8 PRQIVEKLDQFIVGQKEAKKAVAIALRNRYRRSLLDEKLRD-EVMPKNILMIGPTGVGKT 66 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ LA+++ PF +AT TE GYVG DVE+++ L++ + Sbjct 67 EIARRLAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETS 109 > sp|Q8CPH0|HSLU_STAES ATP-dependent protease ATPase subunit HslU OS=Staphylococcus epidermidis (strain ATCC 12228) GN=hslU PE=3 SV=1 Length=467 Score = 99.0 bits (245), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 108/213 (51%), Gaps = 56/213 (26%) Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 GII+IDEIDKVA ++N +DVS +GVQ+ +L ILEG++ ++ + Sbjct 275 GIIFIDEIDKVATNNQNSG--QDVSRQGVQRDILPILEGSMI-----------QTKYGTV 321 Query 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 +T ++LFI GAF +SK P DL I Sbjct 322 NTEHMLFIGAGAFH-------------------------------VSK--PSDL-----I 343 Query 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 PE GR P+ LE L E V ILT+PK +LVKQ++ +L+ + V + F E+A+ +A+ Sbjct 344 PELQGRFPIRVELESLSVEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEI 403 Query 356 AIE-----RKTGARGLRSIIEGIMLDVMFELPS 383 A + GAR L +I+E ++ D+ FE PS Sbjct 404 AYQVNQDTDNIGARRLHTILEKMLEDLSFEAPS 436 Score = 90.5 bits (223), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 76/115 (66%), Gaps = 1/115 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I LNEY++GQ+ AK+ +A+A+ N Y+R + + + E++ NI +IGPTG GKT Sbjct 10 PKDIVSKLNEYIVGQNDAKRKVAIALRNRYRR-SLLKEEEKQEIAPKNILMIGPTGVGKT 68 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGII 178 +A+ +A+I+ PF +AT TE GYVG DVE+++ L+ A V+ +K ++ Sbjct 69 EIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDEKKSLV 123 > sp|Q8Y7J8|HSLU_LISMO ATP-dependent protease ATPase subunit HslU OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=hslU PE=3 SV=1 Length=469 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/261 (33%), Positives = 128/261 (49%), Gaps = 61/261 (23%) Query 161 KLIQA---ADYDVEKAEK-GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTV 216 KLI A A + +AE+ G+I+IDEIDK+A K + VS EGVQ+ +L I+EG+ Sbjct 258 KLIDADELAAEGIHRAEQMGMIFIDEIDKIASKEGGGNA--QVSREGVQRDILPIVEGSQ 315 Query 217 ASVPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLE 276 S ++ ++T ILFI GAF Sbjct 316 IST-----------KYGTVNTEYILFIAAGAFH--------------------------- 337 Query 277 KEDLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLE 336 +SK P DL IPE GR P+ L+KL +E ILT+P NAL+KQ+K +L+ Sbjct 338 ----MSK--PSDL-----IPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLK 386 Query 337 LDNVELEFEEEALSEIAKKAIE-----RKTGARGLRSIIEGIMLDVMFELPSRDDIEKCV 391 + ++L F +EA+ IA+ A + GAR L +I+E ++ D++FE P ++E Sbjct 387 TEGIDLIFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPE-INMESIK 445 Query 392 ITGATVTHGEPPRLLLKDGTE 412 +T V P + KD T+ Sbjct 446 VTENYVNEKLAPIMQNKDLTQ 466 Score = 96.3 bits (238), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 47/103 (46%), Positives = 73/103 (71%), Gaps = 1/103 (1%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKT 123 P++I E L++Y+IGQ+ AKKS+AVA+ N Y+R + + D E+ NI +IGPTG GKT Sbjct 12 PKQIVEKLDQYIIGQNGAKKSVAVALRNRYRRQLMDESIRD-EIIPKNILMIGPTGVGKT 70 Query 124 LLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAA 166 +A+ +A+I+ PF+ +AT TE GYVG DVE+++ L++ + Sbjct 71 EIARRIAKIVRAPFSKVEATKFTEVGYVGRDVESMVRDLVEVS 113 > sp|Q6GHI1|HSLU_STAAR ATP-dependent protease ATPase subunit HslU OS=Staphylococcus aureus (strain MRSA252) GN=hslU PE=3 SV=1 Length=467 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/213 (34%), Positives = 108/213 (51%), Gaps = 56/213 (26%) Query 176 GIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQI 235 GII+IDEIDKVA + N +DVS +GVQ+ +L ILEG+V ++ + Sbjct 275 GIIFIDEIDKVATNNHNSG--QDVSRQGVQRDILPILEGSVI-----------QTKYGTV 321 Query 236 DTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLI 295 +T ++LFI GAF +SK P DL I Sbjct 322 NTEHMLFIGAGAFH-------------------------------VSK--PSDL-----I 343 Query 296 PEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKK 355 PE GR P+ L+ L E V ILT+PK +L+KQ++ +L+ + V + F +EA++ +A+ Sbjct 344 PELQGRFPIRVELDSLAVEDFVRILTEPKLSLIKQYEALLQTEEVTVNFTDEAITRLAEI 403 Query 356 AIE-----RKTGARGLRSIIEGIMLDVMFELPS 383 A + GAR L +I+E ++ D+ FE PS Sbjct 404 AYQVNQDTDNIGARRLHTILEKMLEDLSFEAPS 436 Score = 93.6 bits (231), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 77/117 (66%), Gaps = 5/117 (4%) Query 64 PQEIREILNEYVIGQDQAKKSLAVAVYNHYKR--INSNSKVDDVELSKSNISLIGPTGSG 121 P+EI LNEY++GQ+ AK+ +A+A+ N Y+R ++ SK E+S NI +IGPTG G Sbjct 10 PKEIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLDEESKQ---EISPKNILMIGPTGVG 66 Query 122 KTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGII 178 KT +A+ +A+++ PF +AT TE GYVG DVE+++ L+ + V+ +K ++ Sbjct 67 KTEIARRMAKVVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKAQKKSLV 123 > tr|Q5L436|Q5L436_GEOKA ATP-dependent Clp protease ATPase subunit OS=Geobacillus kaustophilus (strain HTA426) GN=GK0078 PE=3 SV=1 Length=810 Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 87/329 (26%), Positives = 150/329 (46%), Gaps = 64/329 (19%) Query 66 EIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLL 125 ++ EIL+ V+GQD+A K++A AV + + + D + + +GPTG GKT L Sbjct 501 KLEEILHSRVVGQDEAVKAVAKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTEL 554 Query 126 AQTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVE 171 A+ LA RI + +TS + GYVG + L + ++ Y V Sbjct 555 ARALAEAMFGDEDALIRIDMSEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSV- 613 Query 172 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 231 + +DE++K +P + LL++LE + GR + Sbjct 614 ------VLLDEMEKA-----HPDVF---------NILLQVLED--GRLTDSKGRTVDFRN 651 Query 232 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLR 291 I I T+N+ GA +KR K +GF + + + +D+ SKV+ E L+ Sbjct 652 TIIIMTSNV-----GA-----DALKR---NKYVGFNIQD--GNQQYKDMKSKVMDE--LK 694 Query 292 FGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSE 351 PEF+ R+ I L+++ L I+ + LVK+ K+ +++LE E A+ + Sbjct 695 KAFRPEFLNRIDEIIVFHSLEKDHLKQIVRLMADTLVKRLKEQ----DIDLELTEAAIEK 750 Query 352 IAKKAIERKTGARGLRSIIEGIMLDVMFE 380 IA + + + GAR LR ++ + D + E Sbjct 751 IAAEGFDPEYGARPLRRALQKHVEDRLSE 779 > sp|Q6GDQ0|CLPL_STAAR ATP-dependent Clp protease ATP-binding subunit ClpL OS=Staphylococcus aureus (strain MRSA252) GN=clpL PE=3 SV=1 Length=701 Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 81/333 (24%), Positives = 142/333 (43%), Gaps = 83/333 (25%) Query 55 EVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISL 114 +++ D+ + + I L +IGQD+A + ++ A+ + + DD + Sbjct 402 QMDANDIERLKNISSRLRSKIIGQDKAVEMVSRAIRRN------RAGFDDGNRPIGSFLF 455 Query 115 IGPTGSGKTLLAQTLA--------RILNVPFA-IADATSL-----TEAGYVG-EDVENIL 159 +GPTG GKT LA+ LA ++ + + +D T++ T AGYVG +D N L Sbjct 456 VGPTGVGKTELAKQLAIDLFGNKEALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTL 515 Query 160 LKLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKIL-EGTVAS 218 + ++ Y V I DEI+K NP I LL+++ +G + Sbjct 516 TEKVRRNPYSV-------ILFDEIEKA-----NPQIL---------TLLLQVMDDGNLTD 554 Query 219 VPPQGGRKHPHQEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKE 278 QG I+ N + IC GFG N D E++ Sbjct 555 --GQGN---------VINFKNTIIICTSN----------------AGFGNGN---DTEEK 584 Query 279 DLLSKVLPEDLLRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELD 338 D++ ++ +F PEF+ R I LD++AL I+ N L+ + L+ Sbjct 585 DIM-----HEMKKF-FRPEFLNRFNGIVEFLHLDKDALQDIV----NLLLDDVQVTLDKK 634 Query 339 NVELEFEEEALSEIAKKAIERKTGARGLRSIIE 371 + ++ ++A + ++ + + GAR LR I+E Sbjct 635 GITMDVSQDAKDWLIEEGYDEELGARPLRRIVE 667 > sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1 Length=818 Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 85/329 (26%), Positives = 136/329 (41%), Gaps = 64/329 (19%) Query 67 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 126 + + L+E VIGQ A S++ AV + + + D + + +GPTG GKT LA Sbjct 502 LEDTLHERVIGQKDAVNSISKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 555 Query 127 QTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEK 172 + LA R+ F A S GYVG D L + ++ Y V Sbjct 556 RALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSV-- 613 Query 173 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 232 I DEI+K +P V LL++L+ + GR + Sbjct 614 -----ILFDEIEKA-----HPD---------VFNILLQVLDD--GHLTDTKGRTVDFRNT 652 Query 233 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 292 I I T+N+ G +++ +R GFG + D E + +L E L+ Sbjct 653 IIIMTSNV---------GAQELQDQRFA----GFGGSSDGQDYET--IRKTMLKE--LKN 695 Query 293 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 352 PEF+ R+ I KL +E L I+T +V + L N+ + ++A +I Sbjct 696 SFRPEFLNRVDDIIVFHKLTKEELKEIVT----MMVNKLTNRLSEQNINIIVTDKAKDKI 751 Query 353 AKKAIERKTGARGLRSIIEGIMLDVMFEL 381 A++ + + GAR L I+ + D + EL Sbjct 752 AEEGYDPEYGARPLIRAIQKTIEDNLSEL 780 > tr|Q8Y8B1|Q8Y8B1_LISMO ATP-dependent protease OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpE PE=3 SV=1 Length=724 Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 81/321 (25%), Positives = 132/321 (41%), Gaps = 74/321 (23%) Query 75 VIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILN 134 VIGQ+ A K +A A+ R+ SK + + +GPTG GKT L +TLAR L Sbjct 430 VIGQEDAVKKVAKAI--RRSRVGLKSKNRPI----GSFLFVGPTGVGKTELGRTLAREL- 482 Query 135 VPFAIADAT---SLTE--------------AGYVGEDVENILLKLIQAADYDVEKAEKGI 177 F ++A ++E GYVG + L + ++ Y I Sbjct 483 --FGTSEAMIRLDMSEFMEKHSISKLIGSPPGYVGHEEAGQLTEKVRRNPY-------SI 533 Query 178 IYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDT 237 I +DEI+K +P VQ L+ILE + GR ++ + I T Sbjct 534 ILLDEIEKA-----HPD---------VQHMFLQILED--GRLTDSQGRTVSFKDTVIIMT 577 Query 238 TNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIPE 297 +N GA D + +GF + + D+L+K L PE Sbjct 578 SN-----AGATD----------TEASVGFNTTTETKLEKGSDILAK------LGAYFKPE 616 Query 298 FIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAKKAI 357 F+ RL + + L+++ LV I+ + ++ +ML + V ++ +E + Sbjct 617 FLNRLDSVIEFKSLEKDDLVQII----DLMLVDLNEMLAQEGVTIDVSKEVKEHLIDLGY 672 Query 358 ERKTGARGLRSIIEGIMLDVM 378 + K GAR LR I+ + D + Sbjct 673 DPKFGARPLRRTIQEHLEDTI 693 > sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1 Length=817 Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 81/329 (25%), Positives = 140/329 (43%), Gaps = 64/329 (19%) Query 67 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 126 + + L++ VIGQ+ A S++ AV + + + D + + +GPTG GKT LA Sbjct 502 LEDTLHKRVIGQNDAVNSISKAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 555 Query 127 QTLA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEK 172 + LA R+ F A S GYVG D L + ++ Y V Sbjct 556 RALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSV-- 613 Query 173 AEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEF 232 I DEI+K +P V LL++L+ + GR + Sbjct 614 -----ILFDEIEKA-----HPD---------VFNILLQVLDD--GHLTDTKGRTVDFRNT 652 Query 233 IQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRF 292 + I T+N+ G +++ +R GFG ++ +D E + K + ++ L+ Sbjct 653 VIIMTSNV---------GAQELQDQRFA----GFGGASEGSDYE---TVRKTMMKE-LKN 695 Query 293 GLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEI 352 PEF+ R+ I KL ++ L I+T +V + L N+ + ++A +I Sbjct 696 SFRPEFLNRVDDIIVFHKLTKDELKEIVT----MMVNKLTHRLSEQNINIVVTDKAKEKI 751 Query 353 AKKAIERKTGARGLRSIIEGIMLDVMFEL 381 A++ + + GAR L I+ + D + EL Sbjct 752 AEEGYDPEYGARPLIRAIQKTVEDNLSEL 780 > tr|Q8YAB6|Q8YAB6_LISMO Endopeptidase Clp ATP-binding chain C OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=clpC PE=3 SV=1 Length=820 Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 87/339 (26%), Positives = 148/339 (44%), Gaps = 70/339 (21%) Query 67 IREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLA 126 + ++L+E VIGQD A K++++AV + + + D + + +GPTG GKT LA Sbjct 501 MEKLLHERVIGQDAAVKAVSLAVRR------ARAGLKDPKRPIGSFIFLGPTGVGKTELA 554 Query 127 QTLARILNVPFAIADAT---SLTE--------------AGYVGEDVENILLKLIQAADYD 169 + LA + F D+ ++E GYVG + L + ++ Y Sbjct 555 RALAESM---FGDEDSMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYS 611 Query 170 VEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPH 229 V + +DEI+K +P + LL++L+ + GR Sbjct 612 V-------VLLDEIEKA-----HPDVF---------NMLLQVLDD--GRLTDSKGRVVDF 648 Query 230 QEFIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDL 289 + + I T+NI GA Q +K+ K +GF + D + + +VL + Sbjct 649 RNTVIIMTSNI-----GA-----QEMKQ---DKSMGFNVTDPLKD--HKAMEHRVLQD-- 691 Query 290 LRFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEAL 349 L+ PEFI R+ L E+ L I+T L Q K L ++ ++ E A Sbjct 692 LKQAFRPEFINRIDETIVFHSLQEKELKQIVT----LLTAQLTKRLAERDIHVKLTEGAK 747 Query 350 SEIAKKAIERKTGARGLRSIIEGIMLDVMFELPSRDDIE 388 S+IAK + + GAR L+ I+ + D++ E R +I+ Sbjct 748 SKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIK 786 > tr|B0S3X9|B0S3X9_FINM2 ATP-dependent protease Clp ATP-binding subunit ClpC OS=Finegoldia magna (strain ATCC 29328) GN=FMG_0335 PE=3 SV=1 Length=806 Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 85/320 (27%), Positives = 138/320 (43%), Gaps = 74/320 (23%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRI-----NSNSKVDDVELSKSNISLIGPTGSGKTLL 125 L + VIGQD+A S++ A+ KR N N + + +GPTG GKT L Sbjct 495 LKKVVIGQDKAIDSISNAI----KRARVGLKNPNKPI-------GSFVFVGPTGVGKTYL 543 Query 126 AQTLAR-ILNVPFAI--ADATSLTEA-----------GYVGEDVENILLKLIQAADYDVE 171 A+ LA+ + N A+ D T E GYVG D L +++ Y V Sbjct 544 AKKLAKELFNDENAMIRIDMTEYMEKHSVSKLIGSPPGYVGHDDGGQLTDMVRTKPYSV- 602 Query 172 KAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQE 231 I DEI+K +P V LL++L+ + GR ++ Sbjct 603 ------ILFDEIEKA-----HPD---------VFNTLLQVLDD--GRLTDSKGRVVNFKD 640 Query 232 FIQIDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDL-LSKVLPEDLL 290 + I T+NI GA + +E + VIGF N A D+E ++ +K + + Sbjct 641 TVIIMTSNI-----GASE-LE-------SKNVIGF---NTAEDVEVDEYNRNKETINNAM 684 Query 291 RFGLIPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALS 350 + PEF+ RL + L++E + I + LV + K +++ + ++E+ L Sbjct 685 KSMFKPEFMNRLDDVIVFSNLNKENVKEIAGLMMDELVDRMAK----NDLIISYDEKILD 740 Query 351 EIAKKAIERKTGARGLRSII 370 + K ++K GAR L +I Sbjct 741 YLVDKGYDKKFGARPLERLI 760 > tr|B0S0E3|B0S0E3_FINM2 ATP-dependent zinc metalloprotease FtsH OS=Finegoldia magna (strain ATCC 29328) GN=ftsH PE=3 SV=1 Length=628 Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/142 (34%), Positives = 69/142 (49%), Gaps = 13/142 (9%) Query 75 VIGQDQAKKSL--AVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARI 132 V GQ++AK +L V + KR N V L K + L+GP G+GKTLLAQ +A Sbjct 165 VAGQEEAKDALLEVVDFLHDPKRYNEIGAV----LPKG-VLLVGPPGTGKTLLAQAVAGE 219 Query 133 LNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKSEN 192 VPF + E +VG + QAAD KA I++IDEID + ++ + Sbjct 220 AKVPFFSMSGSEFVEM-FVGLGASKVRDLFKQAAD----KA-PCIVFIDEIDAIGKRRDT 273 Query 193 PSITRDVSGEGVQQALLKILEG 214 I+ + E LL ++G Sbjct 274 AGISGNDEREQTLNQLLNEMDG 295 > tr|J7MBF9|J7MBF9_STRP1 Negative regulator of genetic competence OS=Streptococcus pyogenes M1 476 GN=clpC PE=3 SV=1 Length=814 Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 82/328 (25%), Positives = 137/328 (42%), Gaps = 70/328 (21%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA 130 L++ VIGQD A +++ A+ + I + + + +GPTG GKT LA+ LA Sbjct 514 LHKRVIGQDAAVTAISRAIRRNQSGIRTGKR------PIGSFMFLGPTGVGKTELAKALA 567 Query 131 RILN------VPFAIAD------ATSLTEA--GYVGEDVENILLKLIQAADYDVEKAEKG 176 +L + F +++ A+ L A GYVG D L + ++ Y V Sbjct 568 EVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTQKVRNKPYSV------ 621 Query 177 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 236 + DE++K +P I LL++L+ + + GRK I I Sbjct 622 -LLFDEVEKA-----HPDIF---------NVLLQVLDDGI--LTDSRGRKVDFSNTIIIM 664 Query 237 TTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIP 296 T+N+ GA K +GFG + D + + ++L E LR P Sbjct 665 TSNL-----GA--------TALRDDKTVGFGVKDIHQD--HQAMEKRILEE--LRKTYRP 707 Query 297 EFIGRLP---VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 353 EFI R+ V SL + + +V I+ +P L + L+ + AL ++ Sbjct 708 EFINRIDEKVVFHSLTQDNMRDVVKIMVQP-------LITTLAEKGITLKIQPLALKHLS 760 Query 354 KKAIERKTGARGLRSIIEGIMLDVMFEL 381 + + GAR LR ++ + D + EL Sbjct 761 EVGYDEHMGARPLRRTLQTEIEDKLSEL 788 > tr|Q99XR9|Q99XR9_STRP1 Putative endopeptidase Clp ATP-binding chain C OS=Streptococcus pyogenes serotype M1 GN=clpC PE=3 SV=1 Length=814 Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 82/328 (25%), Positives = 137/328 (42%), Gaps = 70/328 (21%) Query 71 LNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLA 130 L++ VIGQD A +++ A+ + I + + + +GPTG GKT LA+ LA Sbjct 514 LHKRVIGQDAAVTAISRAIRRNQSGIRTGKR------PIGSFMFLGPTGVGKTELAKALA 567 Query 131 RILN------VPFAIAD------ATSLTEA--GYVGEDVENILLKLIQAADYDVEKAEKG 176 +L + F +++ A+ L A GYVG D L + ++ Y V Sbjct 568 EVLFDDEAALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTQKVRNKPYSV------ 621 Query 177 IIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQID 236 + DE++K +P I LL++L+ + + GRK I I Sbjct 622 -LLFDEVEKA-----HPDIF---------NVLLQVLDDGI--LTDSRGRKVDFSNTIIIM 664 Query 237 TTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGLIP 296 T+N+ GA K +GFG + D + + ++L E LR P Sbjct 665 TSNL-----GA--------TALRDDKTVGFGVKDIHQD--HQAMEKRILEE--LRKTYRP 707 Query 297 EFIGRLP---VIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIA 353 EFI R+ V SL + + +V I+ +P L + L+ + AL ++ Sbjct 708 EFINRIDEKVVFHSLTQDNMRDVVKIMVQP-------LITTLAEKGITLKIQPLALKHLS 760 Query 354 KKAIERKTGARGLRSIIEGIMLDVMFEL 381 + + GAR LR ++ + D + EL Sbjct 761 EVGYDEHMGARPLRRTLQTEIEDKLSEL 788 > tr|J7M6I1|J7M6I1_STRP1 ATP-dependent zinc metalloprotease FtsH OS=Streptococcus pyogenes M1 476 GN=ftsH PE=3 SV=2 Length=659 Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/77 (38%), Positives = 43/77 (56%), Gaps = 6/77 (8%) Query 110 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 169 + + L GP G+GKTLLA+ +A VPF + E +VG + +++ D Sbjct 221 AGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG-----VGASRVRSLFED 274 Query 170 VEKAEKGIIYIDEIDKV 186 +KAE+ II+IDEID V Sbjct 275 AKKAERAIIFIDEIDAV 291 > tr|Q9A200|Q9A200_STRP1 ATP-dependent zinc metalloprotease FtsH OS=Streptococcus pyogenes serotype M1 GN=ftsH PE=3 SV=1 Length=659 Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/77 (38%), Positives = 43/77 (56%), Gaps = 6/77 (8%) Query 110 SNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYD 169 + + L GP G+GKTLLA+ +A VPF + E +VG + +++ D Sbjct 221 AGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG-----VGASRVRSLFED 274 Query 170 VEKAEKGIIYIDEIDKV 186 +KAE+ II+IDEID V Sbjct 275 AKKAERAIIFIDEIDAV 291 > tr|B0S3J0|B0S3J0_FINM2 Chaperone protein ClpB OS=Finegoldia magna (strain ATCC 29328) GN=clpB PE=3 SV=1 Length=861 Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 128/318 (40%), Gaps = 70/318 (22%) Query 69 EILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQT 128 ++L++ V+GQD+A ++ A+ I + S + + + +GPTG GKT LA+ Sbjct 565 KLLHKRVVGQDEAVTAVTDAI------IRARSGLKSLNRPIGSFIFLGPTGVGKTELAKA 618 Query 129 LA-----------RILNVPFAIADATSL---TEAGYVGEDVENILLKLIQAADYDVEKAE 174 L RI + A S GYVG D L + ++ Y V Sbjct 619 LTENMFDDEKNLIRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSV---- 674 Query 175 KGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQ 234 I DEI+K +P V LL++L+ + GR + I Sbjct 675 ---ILFDEIEKA-----HPD---------VFNILLQVLDD--GRLTDNKGRTVDFKNTII 715 Query 235 IDTTNILFICGGAFDGIEQIIKRRLGQKVIGFGADNKAADLEKEDLLSKVLPEDLLRFGL 294 I T+NI G+ D IE G + +D + ++ D L+ Sbjct 716 IMTSNI-----GSMDLIE------------GIDDNGNISDESRNSVM------DELKSRF 752 Query 295 IPEFIGRLPVIASLEKLDEEALVAILTKPKNALVKQFKKMLELDNVELEFEEEALSEIAK 354 PEF+ R+ I + L ++ + I+ K + L KQ LE + +E +E A I Sbjct 753 KPEFLNRIDDIVMFKPLTKDDIYKIIEKQVSLLQKQ----LEDRQITIEIDESAEDLIID 808 Query 355 KAIERKTGARGLRSIIEG 372 KA + GAR ++ IE Sbjct 809 KAYDVLYGARPVKRFIES 826 > sp|B2V338|RUVB_CLOBA Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=ruvB PE=3 SV=1 Length=344 Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/129 (33%), Positives = 61/129 (47%), Gaps = 29/129 (22%) Query 63 KPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGK 122 +PQ+I NEY IGQD+ K+ L N + + N K + ++ L GP G GK Sbjct 21 RPQKI----NEY-IGQDKVKERL-----NIFIKAAKNRKE-----ALDHVLLYGPPGLGK 65 Query 123 TLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDE 182 T LA +A+ + I ++ AG D+ IL L DYDV ++IDE Sbjct 66 TTLANIIAKEMTGDLKITSGPAIERAG----DLAAILTTL---KDYDV-------LFIDE 111 Query 183 IDKVARKSE 191 I ++ R E Sbjct 112 IHRLNRSVE 120 > sp|Q6GGZ9|Y1421_STAAR Uncharacterized protein SAR1421 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1421 PE=3 SV=1 Length=263 Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/162 (33%), Positives = 77/162 (48%), Gaps = 44/162 (27%) Query 92 HYKRINSNSKVDD-----VELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLT 146 HYK NS+S V + +L+K NI L GPTGSGKT LA+TL+ +++ P + + Sbjct 5 HYK--NSDSTVFNDAKALFDLNK-NILLKGPTGSGKTKLAETLSEVVDTPMHQVNCS--- 58 Query 147 EAGYVGEDVENIL-LKLIQA----------ADYDVEKA--EKGIIYIDEIDKVARKSENP 193 V D E++L K I+ D V KA E I+YIDEI+ +A+ P Sbjct 59 ----VDLDTESLLGFKTIKTNAEGQQEIVFVDGPVIKAMKEGHILYIDEIN-MAKPETLP 113 Query 194 ----------SITRDVSGEGVQ-----QALLKILEGTVASVP 220 IT +GE ++ + I EG V ++P Sbjct 114 VLNGVLDYRRQITNPYTGEVIKAVPGFNVIAAINEGYVGTLP 155 > tr|Q5L3T1|Q5L3T1_GEOKA ATP-dependent zinc metalloprotease FtsH OS=Geobacillus kaustophilus (strain HTA426) GN=ftsH PE=3 SV=1 Length=632 Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 112 ISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVE 171 + L+GP G+GKTLLA+ +A VPF + E +VG + L + A + Sbjct 198 VLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFETA----K 251 Query 172 KAEKGIIYIDEIDKVARK 189 K II+IDEID V R+ Sbjct 252 KNAPCIIFIDEIDAVGRQ 269 > tr|Q8YAC6|Q8YAC6_LISMO ATP-dependent zinc metalloprotease FtsH OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ftsH PE=3 SV=1 Length=691 Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 40/76 (53%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKTLLA+ +A VPF + E +VG + L + A +K Sbjct 218 LVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-RDLFENA----KKN 271 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V R+ Sbjct 272 APCIIFIDEIDAVGRQ 287 > sp|Q8Y6Z8|RUVB_LISMO Holliday junction ATP-dependent DNA helicase RuvB OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ruvB PE=3 SV=1 Length=335 Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 65/148 (44%), Gaps = 31/148 (21%) Query 45 IVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQAKKSLAVAVYNHYKRINSNSKVDD 104 I+ E EEV F+ +PQ L++Y IGQD+ K +L V + R N +D Sbjct 5 IISSETVDAEEVSFETSLRPQN----LSQY-IGQDKVKNNLTVFIEAATLR---NEALD- 55 Query 105 VELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQ 164 ++ L GP G GKT LA +A + ++ G D+ IL L Sbjct 56 ------HVLLYGPPGLGKTTLAMVIASEMGSQIKTTSGPAIERPG----DLATILTSL-- 103 Query 165 AADYDVEKAEKG-IIYIDEIDKVARKSE 191 E G +++IDEI +++R E Sbjct 104 ---------EPGDVLFIDEIHRLSRAIE 122 > tr|B0S222|B0S222_FINM2 ATP-dependent zinc metalloprotease FtsH OS=Finegoldia magna (strain ATCC 29328) GN=ftsH PE=3 SV=1 Length=631 Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKT L++ +A VPF + E +VG + QA +K Sbjct 201 LVGPPGTGKTYLSRAVAGEAKVPFFSISGSDFVEM-FVGVGASRVRDLFEQA-----KKN 254 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V RK Sbjct 255 APCIIFIDEIDAVGRK 270 > sp|Q8CP85|Y1092_STAES Uncharacterized protein SE_1092 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1092 PE=3 SV=1 Length=263 Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/138 (32%), Positives = 64/138 (46%), Gaps = 36/138 (26%) Query 111 NISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENIL-LKLIQAA--- 166 NI L GPTGSGKT LA+TL+ ++ +P + + V D E++L K I Sbjct 26 NILLKGPTGSGKTKLAETLSNVMKLPMHQVNCS-------VDLDTESLLGFKTIHTNEEG 78 Query 167 -------DYDVEKA--EKGIIYIDEIDKVARKSENP----------SITRDVSGEGVQQA 207 D V KA E I+YIDEI+ +A+ P +T +GE ++ A Sbjct 79 HQEIVFIDGPVIKAMKEGHILYIDEIN-MAKPETLPILNGVLDYRRQLTNPYTGEVIKAA 137 Query 208 -----LLKILEGTVASVP 220 + I EG V ++P Sbjct 138 PGFNVIAAINEGYVGTLP 155 > tr|A0A0H2VIV0|A0A0H2VIV0_STAES ATP-dependent zinc metalloprotease FtsH OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ftsH PE=3 SV=1 Length=700 Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 39/76 (51%), Gaps = 6/76 (8%) Query 114 LIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKA 173 L+GP G+GKTLLA+ +A PF + E +VG + L + A +K Sbjct 203 LVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEM-FVGVGASRV-RDLFENA----KKN 256 Query 174 EKGIIYIDEIDKVARK 189 II+IDEID V R+ Sbjct 257 APCIIFIDEIDAVGRQ 272 Lambda K H a alpha 0.315 0.136 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1039300714 Database: all.fasta Posted date: Mar 12, 2017 4:21 PM Number of letters in database: 4,607,251 Number of sequences in database: 15,098 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40