FIMO Results

FIMO - Motif search tool

FIMO version 4.3.0, (Release date: 6 PDT 20)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

DATABASE AND MOTIFS

        DATABASE 
        MERS_genome.fasta

        Database contains 
        1
        sequences,
        30111
        residues
      

        MOTIFS 
        for_meme_5/meme.html 
        (nucleotide)
        


MOTIF
WIDTH

              BEST POSSIBLE MATCH
            


1
6
AACGAA

2
6
AGGTTA

3
6
CTGTCG


        Random model letter frequencies 
        (from non-redundant database):
        
A 0.282 C 0.222 G 0.229 T 0.267 

MOTIF	WIDTH	BEST POSSIBLE MATCH
1	6	AACGAA
2	6	AGGTTA
3	6	CTGTCG

SECTION I: HIGH-SCORING MOTIF OCCURENCES

Each of the following 9 motif occurrences has p-value less then 0.0004
The p-value of a motif occurrence is defined as the probability of a random sequence of the same length as the motif matching that position of the sequence with as good or better a score.
The score for the match of a position in a sequence to a motif is computed by by summing the appropriate entries from each column of the position-dependent scoring matrix that represents the motif.
The q-value of a motif occurrence is defined as the false discovery rate if the occurrence is accepted as significant.
The table is sorted by increasing p-value.
If the start position is larger then the end position, the motif occurrence is on the reverse strand.

Motif	Sequence Name	Start	End	p-value	q-value
1	NC_038294.1	61	66	0.00032	1
1	NC_038294.1	21403	21408	0.00032	1
1	NC_038294.1	25519	25524	0.00032	1
1	NC_038294.1	25841	25846	0.00032	1
1	NC_038294.1	26831	26836	0.00032	1
1	NC_038294.1	27581	27586	0.00032	1
1	NC_038294.1	27608	27613	0.00032	1
1	NC_038294.1	27836	27841	0.00032	1
1	NC_038294.1	28543	28548	0.00032	1

DEBUGGING INFORMATION

Command line:

fimo --motif 1 --norc --verbosity 1 --output-pthresh 4.0E-4 for_meme_5/meme.html MERS_genome.fasta

Settings:



output directory = fimo_out
MEME file name = for_meme_5/meme.html
sequence file name = MERS_genome.fasta


background file name = (null)
motif name = motif
allow clobber = true


compute q-values = true
output p-threshold set = true
output q-threshold set = false


text only = false
scan both strands = false
max sequence length = 250000000


output q-value threshold =   1
output p-value threshold = 0.0004
pseudocount = 0.1


verbosity = 1
selected motif = 1
 =

This information can be useful in the event you wish to report a problem with the FIMO software.

Go to top

output directory = fimo_out	MEME file name = for_meme_5/meme.html	sequence file name = MERS_genome.fasta
background file name = (null)	motif name = motif	allow clobber = true
compute q-values = true	output p-threshold set = true	output q-threshold set = false
text only = false	scan both strands = false	max sequence length = 250000000
output q-value threshold = 1	output p-value threshold = 0.0004	pseudocount = 0.1
verbosity = 1	selected motif = 1	=