******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= housekeeping.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ dnaN 1.0000 100 cds-WP_011947911.1 1.0000 100 dnaX 1.0000 100 cds-WP_003359494.1 1.0000 100 cds-WP_003404855.1 1.0000 100 cds-WP_011947938.1 1.0000 100 cds-WP_011947952.1 1.0000 100 cds-WP_003356351.1 1.0000 100 rho 1.0000 100 rpmE 1.0000 100 cds-WP_011947984.1 1.0000 100 cds-WP_003356899.1 1.0000 100 atpE 1.0000 100 cds-WP_003355885.1 1.0000 100 cds-WP_011947988.1 1.0000 100 atpA 1.0000 100 atpG 1.0000 100 atpD 1.0000 100 cds-WP_003387838.1 1.0000 100 cds-WP_011947999.1 1.0000 100 cds-WP_003355819.1 1.0000 100 rpoN 1.0000 100 cds-WP_003399034.1 1.0000 100 cds-WP_003390961.1 1.0000 100 cds-WP_011948050.1 1.0000 100 cds-WP_011948062.1 1.0000 100 cds-WP_011948063.1 1.0000 100 cds-WP_011948072.1 1.0000 100 cds-WP_003355791.1 1.0000 100 cds-WP_011948077.1 1.0000 100 cds-WP_003362768.1 1.0000 100 cds-WP_011948118.1 1.0000 100 cds-WP_003362795.1 1.0000 100 cds-WP_011948172.1 1.0000 100 cds-WP_011948175.1 1.0000 100 cds-WP_003355838.1 1.0000 100 cds-CBO_RS18635 1.0000 100 cds-WP_011948219.1 1.0000 100 cds-WP_003359683.1 1.0000 100 cds-WP_011948232.1 1.0000 100 cds-WP_003359806.1 1.0000 100 cds-WP_011986143.1 1.0000 100 cds-WP_003403434.1 1.0000 100 cds-WP_011948324.1 1.0000 100 cds-WP_011948327.1 1.0000 100 cds-WP_011948333.1 1.0000 100 cds-WP_011948348.1 1.0000 100 cds-WP_003356776.1 1.0000 100 cds-WP_011948365.1 1.0000 100 cds-WP_011948369.1 1.0000 100 cds-WP_011948372.1 1.0000 100 cds-WP_011948378.1 1.0000 100 greA 1.0000 100 cds-WP_230869867.1 1.0000 100 cds-WP_225900976.1 1.0000 100 cds-WP_011948438.1 1.0000 100 cds-WP_011948452.1 1.0000 100 cds-WP_011948453.1 1.0000 100 cds-WP_011948466.1 1.0000 100 cds-WP_003387694.1 1.0000 100 cds-WP_011948471.1 1.0000 100 cds-WP_011948534.1 1.0000 100 cds-WP_011948541.1 1.0000 100 cds-WP_242649196.1 1.0000 100 cds-WP_011948547.1 1.0000 100 cds-WP_003399301.1 1.0000 100 cds-WP_003357080.1 1.0000 100 cds-WP_011948557.1 1.0000 100 cds-WP_011948563.1 1.0000 100 cds-WP_011948567.1 1.0000 100 cds-WP_011948570.1 1.0000 100 cds-WP_079995886.1 1.0000 100 cds-WP_011948597.1 1.0000 100 cds-WP_011948600.1 1.0000 100 cds-WP_011948616.1 1.0000 100 cds-WP_011948628.1 1.0000 100 cds-WP_011948668.1 1.0000 100 cds-WP_011948696.1 1.0000 100 cds-WP_236883822.1 1.0000 100 cds-WP_011948703.1 1.0000 100 cds-WP_003356424.1 1.0000 100 cds-WP_011948759.1 1.0000 100 cds-WP_011948763.1 1.0000 100 cds-WP_011948772.1 1.0000 100 rpsA 1.0000 100 cds-WP_003356138.1 1.0000 100 cds-WP_011948833.1 1.0000 100 cds-WP_011948840.1 1.0000 100 cds-WP_011948844.1 1.0000 100 cds-WP_003356834.1 1.0000 100 cds-WP_011948871.1 1.0000 100 mtnA 1.0000 100 cds-WP_011948894.1 1.0000 100 cds-WP_003358748.1 1.0000 100 cds-WP_003358712.1 1.0000 100 cds-WP_011948948.1 1.0000 100 ychF 1.0000 100 cds-WP_003393623.1 1.0000 100 cds-WP_003358553.1 1.0000 100 cds-WP_011949080.1 1.0000 100 cds-WP_003388928.1 1.0000 100 cds-WP_011949087.1 1.0000 100 cds-WP_011949091.1 1.0000 100 cds-CBO_RS07675 1.0000 100 cds-WP_011949098.1 1.0000 100 cds-WP_011949106.1 1.0000 100 cds-WP_011949120.1 1.0000 100 cds-WP_011949137.1 1.0000 100 cds-WP_011949138.1 1.0000 100 cds-WP_011986272.1 1.0000 100 cds-WP_011949150.1 1.0000 100 cds-WP_011949159.1 1.0000 100 cds-WP_011986282.1 1.0000 100 cds-WP_011986286.1 1.0000 100 cds-WP_011986294.1 1.0000 100 cds-WP_164928177.1 1.0000 100 cds-WP_012047595.1 1.0000 100 cds-WP_003395988.1 1.0000 100 cds-WP_011986310.1 1.0000 100 cds-WP_011986315.1 1.0000 100 lexA 1.0000 100 cds-WP_003392901.1 1.0000 100 cds-WP_012047676.1 1.0000 100 cds-WP_003358959.1 1.0000 100 scpB 1.0000 100 nusB 1.0000 100 efp 1.0000 100 cds-WP_003358480.1 1.0000 100 cds-WP_011986476.1 1.0000 100 cds-WP_011986487.1 1.0000 100 cds-WP_011986494.1 1.0000 100 cds-WP_011986498.1 1.0000 100 cds-WP_003385301.1 1.0000 100 treR 1.0000 100 cds-WP_012047704.1 1.0000 100 cds-WP_003358481.1 1.0000 100 cds-WP_011986542.1 1.0000 100 cds-WP_011986544.1 1.0000 100 cds-WP_011986554.1 1.0000 100 cds-WP_011986562.1 1.0000 100 cds-WP_003358306.1 1.0000 100 cds-WP_003384878.1 1.0000 100 cds-WP_011986616.1 1.0000 100 cds-WP_003402124.1 1.0000 100 cds-WP_003358234.1 1.0000 100 cds-WP_011986653.1 1.0000 100 cds-WP_011986682.1 1.0000 100 cds-WP_011986684.1 1.0000 100 cds-WP_012047750.1 1.0000 100 cds-WP_012047752.1 1.0000 100 cds-WP_003391706.1 1.0000 100 cds-WP_003358274.1 1.0000 100 cds-WP_011986719.1 1.0000 100 cds-WP_011986731.1 1.0000 100 cds-WP_011986754.1 1.0000 100 cds-WP_011986758.1 1.0000 100 cds-WP_011986765.1 1.0000 100 cds-WP_003395350.1 1.0000 100 cds-WP_011986767.1 1.0000 100 cds-WP_011986769.1 1.0000 100 cds-WP_156226176.1 1.0000 100 cds-WP_012047775.1 1.0000 100 cds-WP_041350636.1 1.0000 100 cds-WP_012047847.1 1.0000 100 cds-WP_012047848.1 1.0000 100 cds-WP_012047850.1 1.0000 100 rpsO 1.0000 100 infB 1.0000 100 cds-WP_004440225.1 1.0000 100 cds-WP_003388362.1 1.0000 100 nusA 1.0000 100 cds-WP_011986794.1 1.0000 100 tsf 1.0000 100 rpsB 1.0000 100 codY 1.0000 100 rplS 1.0000 100 rpsP 1.0000 100 rpmF 1.0000 100 cds-WP_003388461.1 1.0000 100 rpmB 1.0000 100 rpoZ 1.0000 100 cds-WP_257262151.1 1.0000 100 nrdR 1.0000 100 sigG 1.0000 100 sigE 1.0000 100 sigK 1.0000 100 cds-WP_003391911.1 1.0000 100 cds-WP_011986902.1 1.0000 100 cds-WP_011986903.1 1.0000 100 cds-WP_011986937.1 1.0000 100 cds-WP_003404508.1 1.0000 100 cds-WP_011986984.1 1.0000 100 rfbF 1.0000 100 cds-WP_011987038.1 1.0000 100 cds-WP_011987040.1 1.0000 100 cds-WP_011987070.1 1.0000 100 cds-WP_011987090.1 1.0000 100 cds-WP_011987095.1 1.0000 100 cds-WP_011987106.1 1.0000 100 cds-WP_011987107.1 1.0000 100 cds-WP_012047951.1 1.0000 100 cds-WP_012047976.1 1.0000 100 rpoD 1.0000 100 rpsU 1.0000 100 prmA 1.0000 100 hrcA 1.0000 100 rpsT 1.0000 100 holA 1.0000 100 selB 1.0000 100 cds-WP_003357849.1 1.0000 100 cds-WP_012048020.1 1.0000 100 rpmA 1.0000 100 cds-WP_012048022.1 1.0000 100 rplU 1.0000 100 polA 1.0000 100 cds-WP_012099500.1 1.0000 100 cds-WP_230869885.1 1.0000 100 cds-WP_012048092.1 1.0000 100 sigF 1.0000 100 cds-WP_012048124.1 1.0000 100 rplT 1.0000 100 rpmI 1.0000 100 infC 1.0000 100 cds-WP_003357340.1 1.0000 100 cds-WP_012048183.1 1.0000 100 cds-WP_003357370.1 1.0000 100 cds-WP_012048201.1 1.0000 100 cds-WP_012048232.1 1.0000 100 cds-CBO_RS18725 1.0000 100 cds-WP_012048290.1 1.0000 100 cds-WP_012048304.1 1.0000 100 cds-WP_003360267.1 1.0000 100 rpsD 1.0000 100 cds-WP_012048331.1 1.0000 100 cds-WP_012048343.1 1.0000 100 rpsI 1.0000 100 rplM 1.0000 100 rplQ 1.0000 100 cds-WP_003357472.1 1.0000 100 rpsD_2 1.0000 100 rpsK 1.0000 100 rpsM 1.0000 100 rpmJ 1.0000 100 infA 1.0000 100 cds-WP_003357464.1 1.0000 100 rplO 1.0000 100 rpmD 1.0000 100 rpsE 1.0000 100 rplR 1.0000 100 rplF 1.0000 100 rpsH 1.0000 100 cds-WP_003357636.1 1.0000 100 rplE 1.0000 100 rplX 1.0000 100 rplN 1.0000 100 rpsQ 1.0000 100 rpmC 1.0000 100 rplP 1.0000 100 rpsC 1.0000 100 rplV 1.0000 100 rpsS 1.0000 100 rplB 1.0000 100 rplW 1.0000 100 rplD 1.0000 100 rplC 1.0000 100 rpsJ 1.0000 100 tuf 1.0000 100 fusA 1.0000 100 rpsG 1.0000 100 rpsL 1.0000 100 cds-WP_012048355.1 1.0000 100 rpoC 1.0000 100 rpoB 1.0000 100 rplL 1.0000 100 rplJ 1.0000 100 rplA 1.0000 100 rplK 1.0000 100 nusG 1.0000 100 rpmG 1.0000 100 tuf_2 1.0000 100 sigH 1.0000 100 cds-WP_003357349.1 1.0000 100 fusA_2 1.0000 100 greA_2 1.0000 100 cds-WP_003359441.1 1.0000 100 cds-WP_003359471.1 1.0000 100 mfd 1.0000 100 cds-WP_012048397.1 1.0000 100 cds-WP_003400977.1 1.0000 100 cds-WP_003359449.1 1.0000 100 cds-WP_003359341.1 1.0000 100 cds-WP_012048431.1 1.0000 100 rplI 1.0000 100 rpsR 1.0000 100 rpsF 1.0000 100 cds-WP_012048450.1 1.0000 100 noc 1.0000 100 rpmH 1.0000 100 cds-WP_011949166.1 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme housekeeping.fasta -dna -minw 5 -maxw 50 -nmotifs 3 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 5 maxw= 50 nsites: minsites= 2 maxsites= 299 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 29900 N= 299 sample: seed= 0 hsfrac= 0 searchsize= 29900 norand= no csites= 1000 Letter frequencies in dataset: A 0.355 C 0.138 G 0.114 T 0.393 Background letter frequencies (from file dataset with add-one prior applied): A 0.355 C 0.138 G 0.114 T 0.393 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WTCCTCCWY MEME-1 width = 9 sites = 133 llr = 1139 E-value = 1.7e-120 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTCCTCCWY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 31::1::42 pos.-specific C 228a2aa24 probability G :::::::1: matrix T 582:8::35 bits 3.1 2.8 * ** 2.5 * ** 2.2 * ** Relative 1.9 ** ** Entropy 1.6 ** ** (12.4 bits) 1.3 ** ** 0.9 ** ** 0.6 ****** 0.3 ****** * 0.0 --------- Multilevel TTCCTCCAT consensus A TC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCCTCCWY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------- rpmJ 86 4.19e-07 CGGTTTATTA TTCCTCCCC AATAAC rpmH 84 1.50e-06 TTCTAGAGTT TTCCTCCAC GACACTTT rpsL 87 1.50e-06 AGATTAATAC TTCCTCCAC GTGCA rplX 84 1.50e-06 TATTATTATG TTCCTCCAC CGATTTAT cds-WP_011986902.1 85 1.50e-06 AAGATAAAAG TTCCTCCAC ATTACCA rpmF 86 1.50e-06 AGATGAGTCA TTCCTCCAC AAATGT rpsP 86 1.50e-06 ATCTAAAAAT TTCCTCCAC TTTTTG cds-WP_012047847.1 85 1.50e-06 TTTACTGTTG TTCCTCCAC TAATATA rpsF 86 2.02e-06 TCAGGCACCC CTCCTCCAC TTATAT rplJ 84 2.02e-06 CCATTTGACA CTCCTCCAC CTGTGTGT rplC 85 2.02e-06 GATTATACAA CTCCTCCAC GTTTCTT rplW 84 2.02e-06 TAGGTTTTAA CTCCTCCAC ATACGTAT rplO 85 2.02e-06 TCGTATCATT CTCCTCCAC ATTAATA rplU 86 2.02e-06 TCTGACCTTA CTCCTCCAC AAAAAT rpmA 87 2.02e-06 TGAATGTTAC CTCCTCCAC ATCAG cds-WP_003359471.1 82 4.27e-06 TAATAAATAA TTCCTCCTC AGAATAATTA rpsR 87 6.87e-06 AAAATTTCTC TTCCTCCCT ATCAA rpmG 86 6.87e-06 CCAATACATG ATCCTCCAC ATCTAG nusG 65 6.87e-06 TTCACTTATT TTCCTCCCT TTATCCCTAT rplK 86 6.87e-06 ATTGGTGTAT ATCCTCCAC ATTTTA rpsG 86 6.87e-06 TGAATTACAA TTCCTCCCT TCTTTT rpsJ 85 6.87e-06 GCATGGTCTT TTCCTCCCT TGTAATT rplB 87 6.87e-06 ATTCGATTTC TTCCTCCCT TTGTT cds-WP_003357636.1 87 6.87e-06 GAGCAATTAA TTCCTCCCT TTAGA rplF 86 6.87e-06 TTAACCTCTT ATCCTCCAC GTTATT rpsE 87 6.87e-06 AAAAATTTTT TTCCTCCCT TTATT rpsK 87 6.87e-06 TTTTATTCCA TTCCTCCCT TTTCG rpsD_2 83 6.87e-06 TTATATCATT ATCCTCCAC ATTTTAAAT rplS 85 6.87e-06 GTTTTTTAAT TTCCTCCCT TACGTGT cds-WP_003358306.1 87 6.87e-06 TATTTCGTAA TTCCCCCAC CGCTA rplV 85 1.09e-05 CTATTCGACC TTCCTCCAT TTTAAGT rplE 86 1.09e-05 ATTAAGAACT TTCCTCCAT ATTTCC rplQ 84 1.09e-05 TCAAATTCCA TTCCTCCAT ATCCTCTC rplT 85 1.09e-05 ATCCTCGTGT TTCCTCCAT CAAACCC rpsB 87 1.09e-05 TCCTTTTTGG TTCCTCCAT TTAAA rpsC 87 1.14e-05 TCAAATTCTT CTCCTCCCT TAAGC rplM 87 1.58e-05 ATTTTATCAA TCCCTCCCT TTTAC cds-WP_012048290.1 87 1.58e-05 TTCACCATTA ATCCCCCCC TCTAT rpsU 86 1.58e-05 CTTGATCGCC TCCCTCCCT CTTTTG cds-WP_011986937.1 86 1.58e-05 TTATTTTCTA ATCCTCCTC AGATAA sigK 86 1.58e-05 ATTCGTGATA ATCCTCCTC GTCGAA tuf_2 86 2.24e-05 TTCGTATTTT TTCCTCCTT TATTTT rplA 87 2.24e-05 ATTATGGTGT TTCCTCCTT AATCT tuf 86 2.24e-05 TTTGTGTTTT TTCCTCCTT TATTTT rplP 86 2.24e-05 TGCGTATTCC TTCCTCCTT ATTGTA rpsQ 86 2.24e-05 CATTTTGACT TCCCTCCAT TTAGGA prmA 86 2.24e-05 AAGAATAAAA TTCCTCCTT AAAAAG sigE 87 2.24e-05 TCCTTAATAT ATCCTCCCT GAAAA rpoZ 85 2.24e-05 TAATCGTAGT TTCCTCCTT AAATAAG codY 87 2.24e-05 CTCCATTATC TTCCTCCTT TTGGG cds-WP_003358234.1 84 2.24e-05 ATTGTAAAAT TTCCCCCCT TTAGTTTA cds-WP_011986542.1 24 2.24e-05 TTTTGTTTCT CCCCTCCTC AATGCAATTT rplN 85 2.81e-05 TTTTTCGGCT TTCCTCCCA TAAAATG rpmD 85 2.81e-05 CTAAAATCCA ATCCTCCAT TGACCGG cds-WP_003360267.1 85 2.81e-05 TATCGGAATA ATCCTCCAT AATAAAA rfbF 86 2.81e-05 AATAATTTTG CCCCTCCCT TTATTT cds-WP_003385301.1 24 2.81e-05 CTATTTATTT CTCCCCCTC TATTTATTTT rpsH 86 3.36e-05 GCTTTTCGCT TTCCTCCGT TTTATT infA 82 3.36e-05 AGTTCAATTA TTCCTCCAA ACTTATGGAA nusA 83 3.36e-05 CCCCTTGACA TTCCTCCAA TTATTTTTT cds-WP_011986562.1 88 3.36e-05 GTTAATAAAA TTCCTCCAA GGTA cds-WP_003358481.1 86 3.36e-05 TCTTTAAATT TTCCTCCGT TATATA cds-WP_003357472.1 87 3.44e-05 TAATTATTTA CTCCTCCCA ATTCT cds-WP_011948365.1 87 3.44e-05 TTTTTTAACA CTCCTCCCA CTTTC sigH 87 3.68e-05 TATAAATAAA ACCCCCCCC TATGG cds-WP_012048355.1 85 4.03e-05 TTACCTTAAA TCCCTCCTT CAGTTGT rpsM 83 4.03e-05 TCATCCATAA GTCCTCCAC ATTTGAAAT nusB 89 4.03e-05 TATCTTTTAA TCCCTCCTT TTA cds-WP_011948600.1 85 4.03e-05 ATGATATTTA TACCTCCAC TATTTGT rpsD 89 4.70e-05 TTATATCATA ATCCTCCTT CTT tsf 86 4.70e-05 AATCAATTTT ATCCTCCTT ATATAT cds-WP_011986794.1 88 4.70e-05 TGTAATGAGA ATCCTCCTT ATTA cds-WP_011948452.1 85 4.70e-05 TTAATAAAAC ATCCTCCTT TCTATAA cds-WP_012048450.1 86 5.47e-05 TTTTGTTATT TTCCTCCTA TATTCC rplD 87 5.47e-05 AAATTTATCT TTCCTCCTA CGTCT rpsS 86 5.47e-05 CTAACACGCT TCCCTCCGT TTATAT cds-WP_012048183.1 86 5.47e-05 CCATTAATGA ATCCCCCAT ATAAGA rpmI 86 5.47e-05 CATTATTGCT CCCCTCCTT TAGTGT cds-WP_011987038.1 65 5.47e-05 AAGGAGTTTT ATCCCCCGC CCTATTATAT cds-WP_003399301.1 89 5.47e-05 TTTAAAAAAA TTCCTCCTA TTT cds-WP_003356776.1 84 6.01e-05 TTGTATTAAT ATCCTCCAA TATGGGAT cds-WP_003357849.1 86 6.39e-05 ATCTTTAATT CTCCTCCTA ATAAAA rpoD 83 6.39e-05 TATTACCGCT TTCCTCCGA TGTGAATAT cds-WP_003404508.1 87 6.39e-05 TATCCGATAT CTCCTCCTA TCCAG cds-WP_012048201.1 87 7.00e-05 TTTCTTATCT TTTCTCCAC TATTA hrcA 82 7.00e-05 TCACGATTAT TTTCTCCAC AGTTATACTA rpmE 85 7.00e-05 CTGGTTAAGC TTTCTCCAC TTTTATT cds-WP_003359441.1 86 7.61e-05 AAACGAATAA TTCCACCAC GAAATA rplL 84 7.61e-05 TCTTTTTTAA AACCTCCAC GGATTTGT fusA 86 7.61e-05 AAACTTTGCT ACCCTCCTT TTCGTT cds-WP_003357370.1 86 7.61e-05 ACATTACCCT ACCCTCCTT AAAATA cds-WP_011987070.1 87 7.61e-05 TGTTATTTCA TTCCACCAC TTCTT rpsO 86 7.61e-05 ACTATTAATA AACCTCCAC GAATGT cds-WP_003395350.1 86 7.61e-05 GAATTAATTA GTCCTCCCT TTTTCT cds-WP_003359806.1 87 7.61e-05 ATTGGTATTG AACCTCCAC GAGTC fusA_2 87 8.48e-05 TATTTTATCT ATCCCCCTT AATCA rpoC 86 8.48e-05 TAATTAAACT TCCCTCCTA TATGGG rpsI 87 8.48e-05 ACGTCCGACT TCCCTCCTA TTTTT cds-WP_003384878.1 82 8.48e-05 GTGTGACTAA TACCTCCAT TAATTTGCGT cds-WP_012048124.1 87 9.16e-05 TTATGTTTTT CACCTCCCT ACTTA cds-WP_003402124.1 88 9.16e-05 ATTTTTTGTA TTCCCCCTA ATTA cds-WP_003356834.1 89 1.03e-04 TTTTGATGTA ATCCTCCGA TTT cds-WP_003359341.1 22 1.14e-04 TTTTTTAATA TTTCTCCCT TGCCTTAATT cds-WP_012047750.1 87 1.14e-04 TATGACTTTT ATTCTCCAC TATCC efp 85 1.34e-04 TATAAATCAA AACCTCCCT ATGTATT scpB 86 1.34e-04 TATATATATC TTTCTCCGC AACATA cds-WP_003357080.1 85 1.34e-04 TATGATCATG ATCCACCAC TACCTTA cds-WP_012048431.1 87 1.46e-04 TTATATATCC CTTCCCCAC TAAAA cds-WP_003391706.1 90 1.46e-04 ATTCAAAGCT TTCCACCAT AA cds-WP_011986487.1 92 1.46e-04 TTCTATCCTA CTTCTCCCT cds-WP_011949098.1 83 1.57e-04 AAAGTTTAAT ACCCCCCAA ATATCTAAG greA_2 86 1.71e-04 CATTGTTTTA TTTCCCCTC TTATCG cds-WP_011986272.1 85 1.71e-04 TCAAAGATGA CACCTCCAA ATTTTAT noc 85 1.92e-04 TCCTTCTCTT ATTCTCCCT ACCATTA rpmC 86 1.92e-04 AAACTTCTTT ACCCACCAC TTCATT cds-WP_012099500.1 86 1.92e-04 TTTATCAATA ATTCCCCAC TCGAAA cds-WP_003388461.1 86 2.18e-04 AATACCATGT AACCTCCTT ATATTC rplI 39 2.45e-04 TTAATTAAAT TTTCTCCGT CATCTTTTTA cds-WP_012047752.1 87 2.45e-04 ATAAAAATCT TTTCTCCAA TAATA polA 87 2.57e-04 TTACATTTTA AACCTCCAA GTAAA cds-WP_012047775.1 89 2.57e-04 TATGACCTTA CCCCACCAT ATA cds-WP_003357464.1 86 2.79e-04 GAAACTAAAT TATCTCCAC TTATAT cds-WP_011987090.1 83 2.79e-04 TAATATCAAG TCTCTCCTT AAGTATAAA cds-WP_011986544.1 85 2.79e-04 GTCCAAAATA TATCTCCAC TTTTACA sigF 37 3.02e-04 AAGTAAGTCT TTTCCCCTT CCCTTGATTT cds-WP_011986476.1 85 3.02e-04 AGAAATAGAA TTTCCCCTT CTAAATA mfd 86 3.55e-04 GTTATTAATA TCCCACCAA CAATTA rpsT 53 3.55e-04 CATACGCAGA TTTCCCCAA AACTGCTAAA cds-WP_011987095.1 9 3.55e-04 AATACAAA CTTCCCCTT GGTTTTCTAT cds-WP_011986767.1 11 3.55e-04 CTAAATCTAT ATTCTCCGT ATCGATGTCT cds-WP_011986984.1 85 3.79e-04 AAGGTATAAA ACTCCCCTC TATAACA rpoB 85 3.97e-04 AATCAAATAT GTTCCCCAC TTTAATA cds-WP_011986653.1 84 4.49e-04 AAATTTGTGA TTTCCCCTA CTACGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCCTCCWY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- rpmJ 4.2e-07 85_[+1]_6 rpmH 1.5e-06 83_[+1]_8 rpsL 1.5e-06 86_[+1]_5 rplX 1.5e-06 83_[+1]_8 cds-WP_011986902.1 1.5e-06 84_[+1]_7 rpmF 1.5e-06 85_[+1]_6 rpsP 1.5e-06 85_[+1]_6 cds-WP_012047847.1 1.5e-06 84_[+1]_7 rpsF 2e-06 85_[+1]_6 rplJ 2e-06 83_[+1]_8 rplC 2e-06 84_[+1]_7 rplW 2e-06 83_[+1]_8 rplO 2e-06 84_[+1]_7 rplU 2e-06 85_[+1]_6 rpmA 2e-06 86_[+1]_5 cds-WP_003359471.1 4.3e-06 81_[+1]_10 rpsR 6.9e-06 86_[+1]_5 rpmG 6.9e-06 85_[+1]_6 nusG 6.9e-06 64_[+1]_27 rplK 6.9e-06 85_[+1]_6 rpsG 6.9e-06 85_[+1]_6 rpsJ 6.9e-06 84_[+1]_7 rplB 6.9e-06 86_[+1]_5 cds-WP_003357636.1 6.9e-06 86_[+1]_5 rplF 6.9e-06 85_[+1]_6 rpsE 6.9e-06 86_[+1]_5 rpsK 6.9e-06 86_[+1]_5 rpsD_2 6.9e-06 82_[+1]_9 rplS 6.9e-06 84_[+1]_7 cds-WP_003358306.1 6.9e-06 86_[+1]_5 rplV 1.1e-05 84_[+1]_7 rplE 1.1e-05 85_[+1]_6 rplQ 1.1e-05 83_[+1]_8 rplT 1.1e-05 84_[+1]_7 rpsB 1.1e-05 86_[+1]_5 rpsC 1.1e-05 86_[+1]_5 rplM 1.6e-05 86_[+1]_5 cds-WP_012048290.1 1.6e-05 86_[+1]_5 rpsU 1.6e-05 85_[+1]_6 cds-WP_011986937.1 1.6e-05 85_[+1]_6 sigK 1.6e-05 85_[+1]_6 tuf_2 2.2e-05 85_[+1]_6 rplA 2.2e-05 86_[+1]_5 tuf 2.2e-05 85_[+1]_6 rplP 2.2e-05 85_[+1]_6 rpsQ 2.2e-05 85_[+1]_6 prmA 2.2e-05 85_[+1]_6 sigE 2.2e-05 86_[+1]_5 rpoZ 2.2e-05 84_[+1]_7 codY 2.2e-05 86_[+1]_5 cds-WP_003358234.1 2.2e-05 83_[+1]_8 cds-WP_011986542.1 2.2e-05 23_[+1]_68 rplN 2.8e-05 84_[+1]_7 rpmD 2.8e-05 84_[+1]_7 cds-WP_003360267.1 2.8e-05 84_[+1]_7 rfbF 2.8e-05 85_[+1]_6 cds-WP_003385301.1 2.8e-05 23_[+1]_68 rpsH 3.4e-05 85_[+1]_6 infA 3.4e-05 81_[+1]_10 nusA 3.4e-05 82_[+1]_9 cds-WP_011986562.1 3.4e-05 87_[+1]_4 cds-WP_003358481.1 3.4e-05 85_[+1]_6 cds-WP_003357472.1 3.4e-05 86_[+1]_5 cds-WP_011948365.1 3.4e-05 86_[+1]_5 sigH 3.7e-05 86_[+1]_5 cds-WP_012048355.1 4e-05 84_[+1]_7 rpsM 4e-05 82_[+1]_9 nusB 4e-05 88_[+1]_3 cds-WP_011948600.1 4e-05 84_[+1]_7 rpsD 4.7e-05 88_[+1]_3 tsf 4.7e-05 85_[+1]_6 cds-WP_011986794.1 4.7e-05 87_[+1]_4 cds-WP_011948452.1 4.7e-05 84_[+1]_7 cds-WP_012048450.1 5.5e-05 85_[+1]_6 rplD 5.5e-05 86_[+1]_5 rpsS 5.5e-05 85_[+1]_6 cds-WP_012048183.1 5.5e-05 85_[+1]_6 rpmI 5.5e-05 85_[+1]_6 cds-WP_011987038.1 5.5e-05 64_[+1]_27 cds-WP_003399301.1 5.5e-05 88_[+1]_3 cds-WP_003356776.1 6e-05 83_[+1]_8 cds-WP_003357849.1 6.4e-05 85_[+1]_6 rpoD 6.4e-05 82_[+1]_9 cds-WP_003404508.1 6.4e-05 86_[+1]_5 cds-WP_012048201.1 7e-05 86_[+1]_5 hrcA 7e-05 81_[+1]_10 rpmE 7e-05 84_[+1]_7 cds-WP_003359441.1 7.6e-05 85_[+1]_6 rplL 7.6e-05 83_[+1]_8 fusA 7.6e-05 85_[+1]_6 cds-WP_003357370.1 7.6e-05 85_[+1]_6 cds-WP_011987070.1 7.6e-05 86_[+1]_5 rpsO 7.6e-05 85_[+1]_6 cds-WP_003395350.1 7.6e-05 85_[+1]_6 cds-WP_003359806.1 7.6e-05 86_[+1]_5 fusA_2 8.5e-05 86_[+1]_5 rpoC 8.5e-05 85_[+1]_6 rpsI 8.5e-05 86_[+1]_5 cds-WP_003384878.1 8.5e-05 81_[+1]_10 cds-WP_012048124.1 9.2e-05 86_[+1]_5 cds-WP_003402124.1 9.2e-05 87_[+1]_4 cds-WP_003356834.1 0.0001 88_[+1]_3 cds-WP_003359341.1 0.00011 21_[+1]_70 cds-WP_012047750.1 0.00011 86_[+1]_5 efp 0.00013 84_[+1]_7 scpB 0.00013 85_[+1]_6 cds-WP_003357080.1 0.00013 84_[+1]_7 cds-WP_012048431.1 0.00015 86_[+1]_5 cds-WP_003391706.1 0.00015 89_[+1]_2 cds-WP_011986487.1 0.00015 91_[+1] cds-WP_011949098.1 0.00016 82_[+1]_9 greA_2 0.00017 85_[+1]_6 cds-WP_011986272.1 0.00017 84_[+1]_7 noc 0.00019 84_[+1]_7 rpmC 0.00019 85_[+1]_6 cds-WP_012099500.1 0.00019 85_[+1]_6 cds-WP_003388461.1 0.00022 85_[+1]_6 rplI 0.00024 38_[+1]_53 cds-WP_012047752.1 0.00024 86_[+1]_5 polA 0.00026 86_[+1]_5 cds-WP_012047775.1 0.00026 88_[+1]_3 cds-WP_003357464.1 0.00028 85_[+1]_6 cds-WP_011987090.1 0.00028 82_[+1]_9 cds-WP_011986544.1 0.00028 84_[+1]_7 sigF 0.0003 36_[+1]_55 cds-WP_011986476.1 0.0003 84_[+1]_7 mfd 0.00036 85_[+1]_6 rpsT 0.00036 52_[+1]_39 cds-WP_011987095.1 0.00036 8_[+1]_83 cds-WP_011986767.1 0.00036 10_[+1]_81 cds-WP_011986984.1 0.00038 84_[+1]_7 rpoB 0.0004 84_[+1]_7 cds-WP_011986653.1 0.00045 83_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCCTCCWY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTCCTCCWY width=9 seqs=133 rpmJ ( 86) TTCCTCCCC 1 rpmH ( 84) TTCCTCCAC 1 rpsL ( 87) TTCCTCCAC 1 rplX ( 84) TTCCTCCAC 1 cds-WP_011986902.1 ( 85) TTCCTCCAC 1 rpmF ( 86) TTCCTCCAC 1 rpsP ( 86) TTCCTCCAC 1 cds-WP_012047847.1 ( 85) TTCCTCCAC 1 rpsF ( 86) CTCCTCCAC 1 rplJ ( 84) CTCCTCCAC 1 rplC ( 85) CTCCTCCAC 1 rplW ( 84) CTCCTCCAC 1 rplO ( 85) CTCCTCCAC 1 rplU ( 86) CTCCTCCAC 1 rpmA ( 87) CTCCTCCAC 1 cds-WP_003359471.1 ( 82) TTCCTCCTC 1 rpsR ( 87) TTCCTCCCT 1 rpmG ( 86) ATCCTCCAC 1 nusG ( 65) TTCCTCCCT 1 rplK ( 86) ATCCTCCAC 1 rpsG ( 86) TTCCTCCCT 1 rpsJ ( 85) TTCCTCCCT 1 rplB ( 87) TTCCTCCCT 1 cds-WP_003357636.1 ( 87) TTCCTCCCT 1 rplF ( 86) ATCCTCCAC 1 rpsE ( 87) TTCCTCCCT 1 rpsK ( 87) TTCCTCCCT 1 rpsD_2 ( 83) ATCCTCCAC 1 rplS ( 85) TTCCTCCCT 1 cds-WP_003358306.1 ( 87) TTCCCCCAC 1 rplV ( 85) TTCCTCCAT 1 rplE ( 86) TTCCTCCAT 1 rplQ ( 84) TTCCTCCAT 1 rplT ( 85) TTCCTCCAT 1 rpsB ( 87) TTCCTCCAT 1 rpsC ( 87) CTCCTCCCT 1 rplM ( 87) TCCCTCCCT 1 cds-WP_012048290.1 ( 87) ATCCCCCCC 1 rpsU ( 86) TCCCTCCCT 1 cds-WP_011986937.1 ( 86) ATCCTCCTC 1 sigK ( 86) ATCCTCCTC 1 tuf_2 ( 86) TTCCTCCTT 1 rplA ( 87) TTCCTCCTT 1 tuf ( 86) TTCCTCCTT 1 rplP ( 86) TTCCTCCTT 1 rpsQ ( 86) TCCCTCCAT 1 prmA ( 86) TTCCTCCTT 1 sigE ( 87) ATCCTCCCT 1 rpoZ ( 85) TTCCTCCTT 1 codY ( 87) TTCCTCCTT 1 cds-WP_003358234.1 ( 84) TTCCCCCCT 1 cds-WP_011986542.1 ( 24) CCCCTCCTC 1 rplN ( 85) TTCCTCCCA 1 rpmD ( 85) ATCCTCCAT 1 cds-WP_003360267.1 ( 85) ATCCTCCAT 1 rfbF ( 86) CCCCTCCCT 1 cds-WP_003385301.1 ( 24) CTCCCCCTC 1 rpsH ( 86) TTCCTCCGT 1 infA ( 82) TTCCTCCAA 1 nusA ( 83) TTCCTCCAA 1 cds-WP_011986562.1 ( 88) TTCCTCCAA 1 cds-WP_003358481.1 ( 86) TTCCTCCGT 1 cds-WP_003357472.1 ( 87) CTCCTCCCA 1 cds-WP_011948365.1 ( 87) CTCCTCCCA 1 sigH ( 87) ACCCCCCCC 1 cds-WP_012048355.1 ( 85) TCCCTCCTT 1 rpsM ( 83) GTCCTCCAC 1 nusB ( 89) TCCCTCCTT 1 cds-WP_011948600.1 ( 85) TACCTCCAC 1 rpsD ( 89) ATCCTCCTT 1 tsf ( 86) ATCCTCCTT 1 cds-WP_011986794.1 ( 88) ATCCTCCTT 1 cds-WP_011948452.1 ( 85) ATCCTCCTT 1 cds-WP_012048450.1 ( 86) TTCCTCCTA 1 rplD ( 87) TTCCTCCTA 1 rpsS ( 86) TCCCTCCGT 1 cds-WP_012048183.1 ( 86) ATCCCCCAT 1 rpmI ( 86) CCCCTCCTT 1 cds-WP_011987038.1 ( 65) ATCCCCCGC 1 cds-WP_003399301.1 ( 89) TTCCTCCTA 1 cds-WP_003356776.1 ( 84) ATCCTCCAA 1 cds-WP_003357849.1 ( 86) CTCCTCCTA 1 rpoD ( 83) TTCCTCCGA 1 cds-WP_003404508.1 ( 87) CTCCTCCTA 1 cds-WP_012048201.1 ( 87) TTTCTCCAC 1 hrcA ( 82) TTTCTCCAC 1 rpmE ( 85) TTTCTCCAC 1 cds-WP_003359441.1 ( 86) TTCCACCAC 1 rplL ( 84) AACCTCCAC 1 fusA ( 86) ACCCTCCTT 1 cds-WP_003357370.1 ( 86) ACCCTCCTT 1 cds-WP_011987070.1 ( 87) TTCCACCAC 1 rpsO ( 86) AACCTCCAC 1 cds-WP_003395350.1 ( 86) GTCCTCCCT 1 cds-WP_003359806.1 ( 87) AACCTCCAC 1 fusA_2 ( 87) ATCCCCCTT 1 rpoC ( 86) TCCCTCCTA 1 rpsI ( 87) TCCCTCCTA 1 cds-WP_003384878.1 ( 82) TACCTCCAT 1 cds-WP_012048124.1 ( 87) CACCTCCCT 1 cds-WP_003402124.1 ( 88) TTCCCCCTA 1 cds-WP_003356834.1 ( 89) ATCCTCCGA 1 cds-WP_003359341.1 ( 22) TTTCTCCCT 1 cds-WP_012047750.1 ( 87) ATTCTCCAC 1 efp ( 85) AACCTCCCT 1 scpB ( 86) TTTCTCCGC 1 cds-WP_003357080.1 ( 85) ATCCACCAC 1 cds-WP_012048431.1 ( 87) CTTCCCCAC 1 cds-WP_003391706.1 ( 90) TTCCACCAT 1 cds-WP_011986487.1 ( 92) CTTCTCCCT 1 cds-WP_011949098.1 ( 83) ACCCCCCAA 1 greA_2 ( 86) TTTCCCCTC 1 cds-WP_011986272.1 ( 85) CACCTCCAA 1 noc ( 85) ATTCTCCCT 1 rpmC ( 86) ACCCACCAC 1 cds-WP_012099500.1 ( 86) ATTCCCCAC 1 cds-WP_003388461.1 ( 86) AACCTCCTT 1 rplI ( 39) TTTCTCCGT 1 cds-WP_012047752.1 ( 87) TTTCTCCAA 1 polA ( 87) AACCTCCAA 1 cds-WP_012047775.1 ( 89) CCCCACCAT 1 cds-WP_003357464.1 ( 86) TATCTCCAC 1 cds-WP_011987090.1 ( 83) TCTCTCCTT 1 cds-WP_011986544.1 ( 85) TATCTCCAC 1 sigF ( 37) TTTCCCCTT 1 cds-WP_011986476.1 ( 85) TTTCCCCTT 1 mfd ( 86) TCCCACCAA 1 rpsT ( 53) TTTCCCCAA 1 cds-WP_011987095.1 ( 9) CTTCCCCTT 1 cds-WP_011986767.1 ( 11) ATTCTCCGT 1 cds-WP_011986984.1 ( 85) ACTCCCCTC 1 rpoB ( 85) GTTCCCCAC 1 cds-WP_011986653.1 ( 84) TTTCCCCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCCTCCWY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 27508 bayes= 9.70144 E= 1.7e-120 -39 26 -233 46 -198 12 -1370 95 -1370 257 -1370 -112 -1370 286 -1370 -1370 -275 12 -1370 102 -1370 286 -1370 -1370 -1370 286 -1370 -1370 32 56 -75 -46 -98 142 -1370 20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCCTCCWY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 133 E= 1.7e-120 0.270677 0.165414 0.022556 0.541353 0.090226 0.150376 0.000000 0.759398 0.000000 0.819549 0.000000 0.180451 0.000000 1.000000 0.000000 0.000000 0.052632 0.150376 0.000000 0.796992 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.443609 0.203008 0.067669 0.285714 0.180451 0.368421 0.000000 0.451128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTCCTCCWY MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TCCTCC[ATC][TC] -------------------------------------------------------------------------------- Time 45.53 secs. ******************************************************************************** ******************************************************************************** MOTIF WAGGAGGDDW MEME-2 width = 10 sites = 105 llr = 851 E-value = 2.6e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAGGAGGDDW MEME-2 Description -------------------------------------------------------------------------------- Simplified A 662:912445 pos.-specific C :1:::::1:: probability G :28a198242 matrix T 411::::323 bits 3.1 * 2.8 * 2.5 * * 2.2 * * Relative 1.9 * ** Entropy 1.6 ** ** (11.7 bits) 1.3 ***** 0.9 ***** 0.6 ***** * 0.3 ******* ** 0.0 ---------- Multilevel AAGGAGGAGA consensus T ATAT sequence GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGAGGDDW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- cds-WP_011948871.1 86 4.61e-08 TTCATGATAT AAGGAGGGGG TAATA cds-WP_079995886.1 86 4.61e-08 CTCAATAGTC AAGGAGGGGA TTTAT cds-WP_011948372.1 88 2.43e-07 TAGTGGGTAT AAGGAGGGGT TAT cds-WP_011948597.1 86 5.11e-07 AGAATTAGAT AAGGAGGTGA AGAAA cds-WP_011948175.1 84 5.27e-07 TTATGTGAAA TGGGAGGGGA TAATAAT rpmB 85 1.50e-06 TCACAATTTT AGGGAGGTGT TTTTAA cds-WP_011948563.1 87 2.83e-06 ACATGATTTC AAGGAGGGAT ATTA atpD 88 2.83e-06 AGCTCAAAGG TAGGAGGTGT ACT cds-WP_011948466.1 87 2.99e-06 AATATCTATA TAGGAGGGAG ATTA rpoN 77 3.94e-06 ATTAAAATCA AAGGGGGGGT AGGAATTTAT atpG 88 3.94e-06 AATATCTCTG AAGGAGGTAA AAT cds-WP_003358480.1 88 5.73e-06 AAAATTAACT AAGGAGGATA AAA cds-WP_003387694.1 88 5.73e-06 ATATACAAGA AAGGAGGATA ATA atpE 86 5.73e-06 TTTTAAATTT AAGGAGGAAT TTGGT cds-WP_003404855.1 87 6.81e-06 AGTTTAATTT TAGGAGGGAT ACAT cds-WP_012047848.1 86 9.60e-06 TAATAATATA TAGGAGGTAG TCAAT cds-WP_011948763.1 85 9.60e-06 TATAAATTTA ATGGAGGAGT ACAAGA cds-WP_011948833.1 86 1.08e-05 TCTATATTTT TTGGAGGAGG ATATA cds-WP_003359449.1 87 1.28e-05 TATATCAATT TGGGAGGTAA CTAA cds-WP_011949080.1 88 1.28e-05 TATTTTCTAT TAGGAGGAAT AGC cds-WP_011948628.1 86 1.28e-05 TTGAAACTTT TAGGAGGAAT ATATG cds-WP_230869867.1 35 1.28e-05 TATTTGTCAA TAGGAGGATG CCGTTGTTAT cds-WP_003403434.1 87 1.39e-05 CAGTAGAACT TTGGAGGTGA AGTT cds-WP_011948118.1 84 1.39e-05 TTATTATGTT AGGGAGGATT AATATCA rho 86 1.39e-05 AATTTAATAG AGAGAGGGGA TTTCT cds-WP_011948557.1 78 1.62e-05 ATATCTAGTA TAGGAGGTAT ACTAAATTTT cds-WP_011948369.1 87 1.62e-05 AAGTCAACTA TAGGGGGAGT ATAT cds-WP_011948348.1 87 1.62e-05 AAATTTGAAT AAGGAGAAGA GTAC cds-WP_011948219.1 88 1.62e-05 AATGAGCTTT TGGGAGGAAT TTT mtnA 84 1.73e-05 AGATAAAAGT AAAGAGGAGG ATTAAAA cds-WP_003356138.1 87 1.73e-05 GAATACTATG AAAGAGGAGA TTTT dnaN 86 2.00e-05 ATTGTTAATA AAGGAGGCTA ATTTT cds-WP_011986769.1 86 2.25e-05 CTAATATCTG AAAGAGGTGA ATAAA cds-WP_003395988.1 82 2.25e-05 AAAAGAAATA AAGGAAGGGG AGTTAGAGG cds-WP_011948438.1 87 2.25e-05 ATTTTATTTA ATGGAGGAAA CAAA cds-WP_003400977.1 86 2.70e-05 ATTAAATACA ATGGAGGTAA TTATA cds-WP_011948050.1 88 2.70e-05 AATATAAATG TAGGAGAAGA CAA cds-WP_012048343.1 87 2.95e-05 ATTTTTTATC AAGGAGATGT TTTC cds-WP_003387838.1 86 2.95e-05 ATTAGGTTAA TAAGAGGAGA ATAAT rpsT 87 3.46e-05 ATAAAAACAC GAGGGGGTGA AAAA cds-WP_011986754.1 88 3.46e-05 ATTGATATTT TAGGAGATGA ATT cds-WP_011986719.1 85 3.46e-05 AAAATTAAAA TCGGAGGAAA TTTGAT cds-WP_011949091.1 88 3.46e-05 TGTATTTTAT ATGGAGGATA ATC cds-WP_011948570.1 81 3.46e-05 ATTAATAAAG ATGGAGGATA TTTACAAATA cds-WP_003392901.1 85 3.80e-05 TATTATATTT TTGGAGGGAT TTGCTA cds-WP_011948840.1 85 3.80e-05 AAATAAGCTA AAAGAGGGAA AATAAT cds-WP_003355885.1 84 3.80e-05 TTAAGGCCGA AGGGAGGCTT CCTATAT cds-WP_011986282.1 87 4.30e-05 ATATTCACAT AAGGAAGTGA TAAA cds-WP_011948547.1 86 4.30e-05 TAAAAAATAT TCGGAGGTAA AAATA cds-WP_003356899.1 87 4.30e-05 TAAAGTATAA AAGGAAGTGA TGAA cds-WP_011947999.1 89 4.58e-05 TATTTAATAT TTGGAGGTAA AG cds-WP_011987107.1 87 5.26e-05 TTTATATATT TCGGAGGAAT TGTA cds-WP_011948668.1 89 5.93e-05 AAATGTATAA TTGGAGGAAT TT cds-WP_011948077.1 87 5.93e-05 TAAATAATTT ATGGAGGCAA TGGA cds-WP_011948063.1 25 5.93e-05 TATAAATAGT TAGGAAGGGT AAAGAACTTT cds-WP_003359494.1 88 5.93e-05 TTGACATATA GGGGAGAGGA TTT cds-WP_011948844.1 86 6.63e-05 CCAACTAAGC AGTGAGGTGA TAATA greA 83 6.63e-05 AACATATCTT GGGGAGGATT ATTTGTAC cds-WP_011948333.1 87 7.45e-05 GTTAAGAGGT AAAGAGGTAG GGCG cds-WP_003355819.1 87 7.45e-05 TATAAAATAG AAAGAGGTAG AATA cds-WP_012047850.1 91 8.20e-05 TTAATTGGGA AAGGAGAATA lexA 87 8.20e-05 TTATTTAATT AATGAGGTGT GATT cds-WP_011986315.1 86 8.20e-05 CATTTACATA AAGGAGAATA AAATA cds-WP_011948378.1 89 8.20e-05 TTTTGCTTTT GGGGAGGTTT TT cds-WP_011948232.1 86 8.20e-05 GATAGAGATA AAGGAGAATG CAAAT cds-WP_003393623.1 87 9.42e-05 GAAGACTGAA TAGGAGAAAA ATTT cds-WP_011948534.1 86 9.42e-05 TATATCTTGC TTGGAGGATT ACTAT cds-WP_011948072.1 86 9.42e-05 GGTCTTTATA ACAGAGGTGA AGTAT cds-WP_011947938.1 88 9.42e-05 ATATAAAGTG AAAGAGGATA CAA cds-WP_011949137.1 84 1.04e-04 GACATATTAA AAGGAGATTA ATAAAAA atpA 87 1.04e-04 TCAAAAGAGA ATAGAGGTGA GATT rpmJ 35 1.18e-04 TGACATCTTG AAAGAGGTAT GCTAAATTGG cds-WP_011948696.1 86 1.18e-04 TTTTTATAAT TAGGAGATAA ACTAA cds-WP_011947984.1 4 1.18e-04 ATT TAGGAGATAA GCTTACATCA cds-WP_011986494.1 82 1.28e-04 ACCTTATAGT CAAGAGGAGA TTTTAAAAA cds-WP_011948327.1 89 1.28e-04 AAAAGATGGG AAGGAGAATT TT cds-WP_011986937.1 39 1.46e-04 CCTTTTGGTA AATGAGGAAA GTTTGGTTTA cds-WP_003358712.1 88 1.46e-04 AGTATACTTT TAGGAGAATA AAT cds-WP_011949150.1 82 1.60e-04 TTTAAATTAA TAAGAGGATG GTGTTTGTA cds-WP_011949106.1 86 1.60e-04 GTGATGACAA AAGGAGATTT AAATA cds-WP_011948759.1 89 1.60e-04 AGTGTGAGTA TAGGAGGACT TT cds-WP_011986682.1 86 1.78e-04 TATAACACTT TGGGAGAGTT TGTTT cds-WP_011948541.1 46 1.78e-04 TAATAAGGAT AAGGAAGATG TGATAAATAA cds-WP_003399034.1 6 1.94e-04 AAAAG TAGGAAGGAT TATCTTATAA cds-WP_011947911.1 86 1.94e-04 GTATTCCATA AAAGGGGCGA ATTCT cds-WP_011948948.1 88 2.12e-04 ATAATAGAAA ACTGAGGTGA AGT cds-WP_011948894.1 89 2.12e-04 ATATTAGGAA TAGGTGGGAA AT cds-WP_011949138.1 87 2.37e-04 ATTAGTAATT ATTGAGGTGA TAAA cds-WP_011948772.1 82 2.37e-04 ATAAAATATT AAGGAAAGGA ATGAGGTTT cds-WP_011948703.1 87 2.37e-04 TTAAAGTATA AAGGAGTGAG ATTA cds-WP_011948471.1 88 2.37e-04 TAAAATAATT CAGGAGAGAG AAA dnaX 89 2.37e-04 TTATGGTGAG AAGGTGGTAA CA cds-WP_011949098.1 10 2.57e-04 AATACGTTA AGGGAGTTGT TAAAGAGAGA cds-WP_011948616.1 88 2.57e-04 TAATTGTATA AGGGAGACTA GGA cds-WP_011948172.1 42 2.57e-04 AATATGTTAT AATGAGGTTA TGAAAACTAT rplS 30 2.82e-04 TCATGCCCGC CAGGAGACGA ATATAGTAAA cds-WP_003356351.1 85 2.82e-04 CAATAAATAA TAGGGAGTGA TTTTAA cds-CBO_RS07675 91 3.99e-04 AAAAATATGA AAGGGAGAAG cds-WP_011949087.1 86 3.99e-04 TAATAACCAC AGGGAGTGAT AAGTA cds-WP_003358553.1 82 3.99e-04 TTTTTACTTT TAAGAAGGGA TGAATAATT cds-WP_225900976.1 89 3.99e-04 ATATTCCTTA ACGGAAGAAG GA rpsS 51 4.27e-04 CTTATAATTA TAAGAGAAGT TAGAACATTA cds-WP_003358274.1 85 4.61e-04 AACACATATA TGTGAGGTAT ATATAA cds-WP_003390961.1 53 5.42e-04 AAATCGAAAT TTAGAGGAAT CTCTTATATA cds-WP_003357349.1 15 6.28e-04 TACTGTAATA AATGGGGATA TAGATATAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGAGGDDW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-WP_011948871.1 4.6e-08 85_[+2]_5 cds-WP_079995886.1 4.6e-08 85_[+2]_5 cds-WP_011948372.1 2.4e-07 87_[+2]_3 cds-WP_011948597.1 5.1e-07 85_[+2]_5 cds-WP_011948175.1 5.3e-07 83_[+2]_7 rpmB 1.5e-06 84_[+2]_6 cds-WP_011948563.1 2.8e-06 86_[+2]_4 atpD 2.8e-06 87_[+2]_3 cds-WP_011948466.1 3e-06 86_[+2]_4 rpoN 3.9e-06 76_[+2]_14 atpG 3.9e-06 87_[+2]_3 cds-WP_003358480.1 5.7e-06 87_[+2]_3 cds-WP_003387694.1 5.7e-06 87_[+2]_3 atpE 5.7e-06 85_[+2]_5 cds-WP_003404855.1 6.8e-06 86_[+2]_4 cds-WP_012047848.1 9.6e-06 85_[+2]_5 cds-WP_011948763.1 9.6e-06 84_[+2]_6 cds-WP_011948833.1 1.1e-05 85_[+2]_5 cds-WP_003359449.1 1.3e-05 86_[+2]_4 cds-WP_011949080.1 1.3e-05 87_[+2]_3 cds-WP_011948628.1 1.3e-05 85_[+2]_5 cds-WP_230869867.1 1.3e-05 34_[+2]_56 cds-WP_003403434.1 1.4e-05 86_[+2]_4 cds-WP_011948118.1 1.4e-05 83_[+2]_7 rho 1.4e-05 85_[+2]_5 cds-WP_011948557.1 1.6e-05 77_[+2]_13 cds-WP_011948369.1 1.6e-05 86_[+2]_4 cds-WP_011948348.1 1.6e-05 86_[+2]_4 cds-WP_011948219.1 1.6e-05 87_[+2]_3 mtnA 1.7e-05 83_[+2]_7 cds-WP_003356138.1 1.7e-05 86_[+2]_4 dnaN 2e-05 85_[+2]_5 cds-WP_011986769.1 2.2e-05 85_[+2]_5 cds-WP_003395988.1 2.2e-05 81_[+2]_9 cds-WP_011948438.1 2.2e-05 86_[+2]_4 cds-WP_003400977.1 2.7e-05 85_[+2]_5 cds-WP_011948050.1 2.7e-05 87_[+2]_3 cds-WP_012048343.1 2.9e-05 86_[+2]_4 cds-WP_003387838.1 2.9e-05 85_[+2]_5 rpsT 3.5e-05 86_[+2]_4 cds-WP_011986754.1 3.5e-05 87_[+2]_3 cds-WP_011986719.1 3.5e-05 84_[+2]_6 cds-WP_011949091.1 3.5e-05 87_[+2]_3 cds-WP_011948570.1 3.5e-05 80_[+2]_10 cds-WP_003392901.1 3.8e-05 84_[+2]_6 cds-WP_011948840.1 3.8e-05 84_[+2]_6 cds-WP_003355885.1 3.8e-05 83_[+2]_7 cds-WP_011986282.1 4.3e-05 86_[+2]_4 cds-WP_011948547.1 4.3e-05 85_[+2]_5 cds-WP_003356899.1 4.3e-05 86_[+2]_4 cds-WP_011947999.1 4.6e-05 88_[+2]_2 cds-WP_011987107.1 5.3e-05 86_[+2]_4 cds-WP_011948668.1 5.9e-05 88_[+2]_2 cds-WP_011948077.1 5.9e-05 86_[+2]_4 cds-WP_011948063.1 5.9e-05 24_[+2]_66 cds-WP_003359494.1 5.9e-05 87_[+2]_3 cds-WP_011948844.1 6.6e-05 85_[+2]_5 greA 6.6e-05 82_[+2]_8 cds-WP_011948333.1 7.4e-05 86_[+2]_4 cds-WP_003355819.1 7.4e-05 86_[+2]_4 cds-WP_012047850.1 8.2e-05 90_[+2] lexA 8.2e-05 86_[+2]_4 cds-WP_011986315.1 8.2e-05 85_[+2]_5 cds-WP_011948378.1 8.2e-05 88_[+2]_2 cds-WP_011948232.1 8.2e-05 85_[+2]_5 cds-WP_003393623.1 9.4e-05 86_[+2]_4 cds-WP_011948534.1 9.4e-05 85_[+2]_5 cds-WP_011948072.1 9.4e-05 85_[+2]_5 cds-WP_011947938.1 9.4e-05 87_[+2]_3 cds-WP_011949137.1 0.0001 83_[+2]_7 atpA 0.0001 86_[+2]_4 rpmJ 0.00012 34_[+2]_56 cds-WP_011948696.1 0.00012 85_[+2]_5 cds-WP_011947984.1 0.00012 3_[+2]_87 cds-WP_011986494.1 0.00013 81_[+2]_9 cds-WP_011948327.1 0.00013 88_[+2]_2 cds-WP_011986937.1 0.00015 38_[+2]_52 cds-WP_003358712.1 0.00015 87_[+2]_3 cds-WP_011949150.1 0.00016 81_[+2]_9 cds-WP_011949106.1 0.00016 85_[+2]_5 cds-WP_011948759.1 0.00016 88_[+2]_2 cds-WP_011986682.1 0.00018 85_[+2]_5 cds-WP_011948541.1 0.00018 45_[+2]_45 cds-WP_003399034.1 0.00019 5_[+2]_85 cds-WP_011947911.1 0.00019 85_[+2]_5 cds-WP_011948948.1 0.00021 87_[+2]_3 cds-WP_011948894.1 0.00021 88_[+2]_2 cds-WP_011949138.1 0.00024 86_[+2]_4 cds-WP_011948772.1 0.00024 81_[+2]_9 cds-WP_011948703.1 0.00024 86_[+2]_4 cds-WP_011948471.1 0.00024 87_[+2]_3 dnaX 0.00024 88_[+2]_2 cds-WP_011949098.1 0.00026 9_[+2]_81 cds-WP_011948616.1 0.00026 87_[+2]_3 cds-WP_011948172.1 0.00026 41_[+2]_49 rplS 0.00028 29_[+2]_61 cds-WP_003356351.1 0.00028 84_[+2]_6 cds-CBO_RS07675 0.0004 90_[+2] cds-WP_011949087.1 0.0004 85_[+2]_5 cds-WP_003358553.1 0.0004 81_[+2]_9 cds-WP_225900976.1 0.0004 88_[+2]_2 rpsS 0.00043 50_[+2]_40 cds-WP_003358274.1 0.00046 84_[+2]_6 cds-WP_003390961.1 0.00054 52_[+2]_38 cds-WP_003357349.1 0.00063 14_[+2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGAGGDDW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAGGAGGDDW width=10 seqs=105 cds-WP_011948871.1 ( 86) AAGGAGGGGG 1 cds-WP_079995886.1 ( 86) AAGGAGGGGA 1 cds-WP_011948372.1 ( 88) AAGGAGGGGT 1 cds-WP_011948597.1 ( 86) AAGGAGGTGA 1 cds-WP_011948175.1 ( 84) TGGGAGGGGA 1 rpmB ( 85) AGGGAGGTGT 1 cds-WP_011948563.1 ( 87) AAGGAGGGAT 1 atpD ( 88) TAGGAGGTGT 1 cds-WP_011948466.1 ( 87) TAGGAGGGAG 1 rpoN ( 77) AAGGGGGGGT 1 atpG ( 88) AAGGAGGTAA 1 cds-WP_003358480.1 ( 88) AAGGAGGATA 1 cds-WP_003387694.1 ( 88) AAGGAGGATA 1 atpE ( 86) AAGGAGGAAT 1 cds-WP_003404855.1 ( 87) TAGGAGGGAT 1 cds-WP_012047848.1 ( 86) TAGGAGGTAG 1 cds-WP_011948763.1 ( 85) ATGGAGGAGT 1 cds-WP_011948833.1 ( 86) TTGGAGGAGG 1 cds-WP_003359449.1 ( 87) TGGGAGGTAA 1 cds-WP_011949080.1 ( 88) TAGGAGGAAT 1 cds-WP_011948628.1 ( 86) TAGGAGGAAT 1 cds-WP_230869867.1 ( 35) TAGGAGGATG 1 cds-WP_003403434.1 ( 87) TTGGAGGTGA 1 cds-WP_011948118.1 ( 84) AGGGAGGATT 1 rho ( 86) AGAGAGGGGA 1 cds-WP_011948557.1 ( 78) TAGGAGGTAT 1 cds-WP_011948369.1 ( 87) TAGGGGGAGT 1 cds-WP_011948348.1 ( 87) AAGGAGAAGA 1 cds-WP_011948219.1 ( 88) TGGGAGGAAT 1 mtnA ( 84) AAAGAGGAGG 1 cds-WP_003356138.1 ( 87) AAAGAGGAGA 1 dnaN ( 86) AAGGAGGCTA 1 cds-WP_011986769.1 ( 86) AAAGAGGTGA 1 cds-WP_003395988.1 ( 82) AAGGAAGGGG 1 cds-WP_011948438.1 ( 87) ATGGAGGAAA 1 cds-WP_003400977.1 ( 86) ATGGAGGTAA 1 cds-WP_011948050.1 ( 88) TAGGAGAAGA 1 cds-WP_012048343.1 ( 87) AAGGAGATGT 1 cds-WP_003387838.1 ( 86) TAAGAGGAGA 1 rpsT ( 87) GAGGGGGTGA 1 cds-WP_011986754.1 ( 88) TAGGAGATGA 1 cds-WP_011986719.1 ( 85) TCGGAGGAAA 1 cds-WP_011949091.1 ( 88) ATGGAGGATA 1 cds-WP_011948570.1 ( 81) ATGGAGGATA 1 cds-WP_003392901.1 ( 85) TTGGAGGGAT 1 cds-WP_011948840.1 ( 85) AAAGAGGGAA 1 cds-WP_003355885.1 ( 84) AGGGAGGCTT 1 cds-WP_011986282.1 ( 87) AAGGAAGTGA 1 cds-WP_011948547.1 ( 86) TCGGAGGTAA 1 cds-WP_003356899.1 ( 87) AAGGAAGTGA 1 cds-WP_011947999.1 ( 89) TTGGAGGTAA 1 cds-WP_011987107.1 ( 87) TCGGAGGAAT 1 cds-WP_011948668.1 ( 89) TTGGAGGAAT 1 cds-WP_011948077.1 ( 87) ATGGAGGCAA 1 cds-WP_011948063.1 ( 25) TAGGAAGGGT 1 cds-WP_003359494.1 ( 88) GGGGAGAGGA 1 cds-WP_011948844.1 ( 86) AGTGAGGTGA 1 greA ( 83) GGGGAGGATT 1 cds-WP_011948333.1 ( 87) AAAGAGGTAG 1 cds-WP_003355819.1 ( 87) AAAGAGGTAG 1 cds-WP_012047850.1 ( 91) AAGGAGAATA 1 lexA ( 87) AATGAGGTGT 1 cds-WP_011986315.1 ( 86) AAGGAGAATA 1 cds-WP_011948378.1 ( 89) GGGGAGGTTT 1 cds-WP_011948232.1 ( 86) AAGGAGAATG 1 cds-WP_003393623.1 ( 87) TAGGAGAAAA 1 cds-WP_011948534.1 ( 86) TTGGAGGATT 1 cds-WP_011948072.1 ( 86) ACAGAGGTGA 1 cds-WP_011947938.1 ( 88) AAAGAGGATA 1 cds-WP_011949137.1 ( 84) AAGGAGATTA 1 atpA ( 87) ATAGAGGTGA 1 rpmJ ( 35) AAAGAGGTAT 1 cds-WP_011948696.1 ( 86) TAGGAGATAA 1 cds-WP_011947984.1 ( 4) TAGGAGATAA 1 cds-WP_011986494.1 ( 82) CAAGAGGAGA 1 cds-WP_011948327.1 ( 89) AAGGAGAATT 1 cds-WP_011986937.1 ( 39) AATGAGGAAA 1 cds-WP_003358712.1 ( 88) TAGGAGAATA 1 cds-WP_011949150.1 ( 82) TAAGAGGATG 1 cds-WP_011949106.1 ( 86) AAGGAGATTT 1 cds-WP_011948759.1 ( 89) TAGGAGGACT 1 cds-WP_011986682.1 ( 86) TGGGAGAGTT 1 cds-WP_011948541.1 ( 46) AAGGAAGATG 1 cds-WP_003399034.1 ( 6) TAGGAAGGAT 1 cds-WP_011947911.1 ( 86) AAAGGGGCGA 1 cds-WP_011948948.1 ( 88) ACTGAGGTGA 1 cds-WP_011948894.1 ( 89) TAGGTGGGAA 1 cds-WP_011949138.1 ( 87) ATTGAGGTGA 1 cds-WP_011948772.1 ( 82) AAGGAAAGGA 1 cds-WP_011948703.1 ( 87) AAGGAGTGAG 1 cds-WP_011948471.1 ( 88) CAGGAGAGAG 1 dnaX ( 89) AAGGTGGTAA 1 cds-WP_011949098.1 ( 10) AGGGAGTTGT 1 cds-WP_011948616.1 ( 88) AGGGAGACTA 1 cds-WP_011948172.1 ( 42) AATGAGGTTA 1 rplS ( 30) CAGGAGACGA 1 cds-WP_003356351.1 ( 85) TAGGGAGTGA 1 cds-CBO_RS07675 ( 91) AAGGGAGAAG 1 cds-WP_011949087.1 ( 86) AGGGAGTGAT 1 cds-WP_003358553.1 ( 82) TAAGAAGGGA 1 cds-WP_225900976.1 ( 89) ACGGAAGAAG 1 rpsS ( 51) TAAGAGAAGT 1 cds-WP_003358274.1 ( 85) TGTGAGGTAT 1 cds-WP_003390961.1 ( 53) TTAGAGGAAT 1 cds-WP_003357349.1 ( 15) AATGGGGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGAGGDDW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 27209 bayes= 8.55404 E= 2.6e-053 66 -227 -158 -8 87 -127 42 -146 -105 -1336 273 -237 -1336 -1336 314 -1336 136 -1336 -77 -436 -176 -1336 298 -1336 -83 -1336 276 -378 14 -127 88 -20 3 -386 178 -72 53 -1336 42 -24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGAGGDDW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 105 E= 2.6e-053 0.561905 0.028571 0.038095 0.371429 0.647619 0.057143 0.152381 0.142857 0.171429 0.000000 0.752381 0.076190 0.000000 0.000000 1.000000 0.000000 0.914286 0.000000 0.066667 0.019048 0.104762 0.000000 0.895238 0.000000 0.200000 0.000000 0.771429 0.028571 0.390476 0.057143 0.209524 0.342857 0.361905 0.009524 0.390476 0.238095 0.514286 0.000000 0.152381 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAGGAGGDDW MEME-2 regular expression -------------------------------------------------------------------------------- [AT]AGGAG[GA][ATG][GAT][AT] -------------------------------------------------------------------------------- Time 86.43 secs. ******************************************************************************** ******************************************************************************** MOTIF CYTYTTCCWCGTYYTS MEME-3 width = 16 sites = 17 llr = 206 E-value = 2.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYTYTTCCWCGTYYTS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:2:11:23:2::::: pos.-specific C 94:622a5271:5416 probability G :1211::2117::::3 matrix T :66467:242:a5691 bits 3.1 2.8 * 2.5 * 2.2 * * Relative 1.9 * * Entropy 1.6 * * ** * (17.5 bits) 1.3 * * * **** * 0.9 * * * ******* 0.6 ** * *** ******* 0.3 ******** ******* 0.0 ---------------- Multilevel CTTCTTCCTCGTCTTC consensus CAT AT TC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTYTTCCWCGTYYTS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------- rpsE 48 2.10e-08 ATTTCTTGAA CGTCTTCCACGTTCTC TTCGTCCAGA cds-WP_011986143.1 7 5.68e-08 TGATTC CCTTTTCGACGTTCTC GTAATATATT cds-WP_003357636.1 31 9.59e-08 ACGTTTCTGA CTGCTCCTTCGTTCTC TTGATAATTC rplD 17 2.23e-07 TAATTATTTT CCGCCTCATGGTCCTG GTTTATTTCC cds-WP_003395350.1 53 3.52e-07 ACGTTGTAGT CTTTGTCCACGTTTTG AATAAGTGAA cds-WP_011986937.1 20 4.87e-07 ATTCAAAATA CTTCCCCCTCCTTTTG GTAAATGAGG codY 38 6.00e-07 CTGTATTATA CTTTTTCGTCGTCCTT AGTTATATAT cds-WP_011987040.1 29 7.34e-07 AATATTGTAT CCACATCCTCGTCTTT CAAATTATAA cds-WP_012048450.1 29 8.10e-07 ACTAAGATTT ACATTTCCCCGTCTTC GTATGTTATT rplF 42 8.96e-07 TTCTTTTAAT CCGCAACCGCCTCTTC ATGAAACGAT rplE 28 1.32e-06 ATTCTAAAAT CTTCTACCTTGTTTTC ATTCTCATAC rpoC 3 1.91e-06 CT CTTCTCCTGCATCTTG GTCTAAATCT rplX 6 2.08e-06 AAAAA CCTGGTCAACGTTCCC TCGATTCTCT mfd 20 2.47e-06 ATATCATCTT CTACCTCACTGTCTCC GATACTTATT rpsI 13 2.93e-06 TAATTTCCAA ATATTTCCTCGTCTTG TATTAGTTCT rpsQ 50 6.45e-06 ATAGAATTCT CTTCTTCTCTATTCTC GTATAGTTGT cds-WP_003388362.1 3 8.04e-06 GT CTTTTTCGATATCTTC TTTAGAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTYTTCCWCGTYYTS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- rpsE 2.1e-08 47_[+3]_37 cds-WP_011986143.1 5.7e-08 6_[+3]_78 cds-WP_003357636.1 9.6e-08 30_[+3]_54 rplD 2.2e-07 16_[+3]_68 cds-WP_003395350.1 3.5e-07 52_[+3]_32 cds-WP_011986937.1 4.9e-07 19_[+3]_65 codY 6e-07 37_[+3]_47 cds-WP_011987040.1 7.3e-07 28_[+3]_56 cds-WP_012048450.1 8.1e-07 28_[+3]_56 rplF 9e-07 41_[+3]_43 rplE 1.3e-06 27_[+3]_57 rpoC 1.9e-06 2_[+3]_82 rplX 2.1e-06 5_[+3]_79 mfd 2.5e-06 19_[+3]_65 rpsI 2.9e-06 12_[+3]_72 rpsQ 6.4e-06 49_[+3]_35 cds-WP_003388362.1 8e-06 2_[+3]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTYTTCCWCGTYYTS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYTYTTCCWCGTYYTS width=16 seqs=17 rpsE ( 48) CGTCTTCCACGTTCTC 1 cds-WP_011986143.1 ( 7) CCTTTTCGACGTTCTC 1 cds-WP_003357636.1 ( 31) CTGCTCCTTCGTTCTC 1 rplD ( 17) CCGCCTCATGGTCCTG 1 cds-WP_003395350.1 ( 53) CTTTGTCCACGTTTTG 1 cds-WP_011986937.1 ( 20) CTTCCCCCTCCTTTTG 1 codY ( 38) CTTTTTCGTCGTCCTT 1 cds-WP_011987040.1 ( 29) CCACATCCTCGTCTTT 1 cds-WP_012048450.1 ( 29) ACATTTCCCCGTCTTC 1 rplF ( 42) CCGCAACCGCCTCTTC 1 rplE ( 28) CTTCTACCTTGTTTTC 1 rpoC ( 3) CTTCTCCTGCATCTTG 1 rplX ( 6) CCTGGTCAACGTTCCC 1 mfd ( 20) CTACCTCACTGTCTCC 1 rpsI ( 13) ATATTTCCTCGTCTTG 1 rpsQ ( 50) CTTCTTCTCTATTCTC 1 cds-WP_003388362.1 ( 3) CTTTTTCGATATCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTYTTCCWCGTYYTS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 25415 bayes= 11.3401 E= 2.8e-001 -159 267 -1073 -1073 -1073 135 -95 58 -59 -1073 63 58 -1073 209 -95 -16 -159 35 5 58 -159 35 -1073 84 -1073 286 -1073 -1073 -101 177 63 -115 -27 35 5 7 -1073 235 -95 -74 -101 -23 263 -1073 -1073 -1073 -1073 135 -1073 194 -1073 26 -1073 158 -1073 58 -1073 -23 -1073 117 -1073 209 137 -174 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTYTTCCWCGTYYTS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 17 E= 2.8e-001 0.117647 0.882353 0.000000 0.000000 0.000000 0.352941 0.058824 0.588235 0.235294 0.000000 0.176471 0.588235 0.000000 0.588235 0.058824 0.352941 0.117647 0.176471 0.117647 0.588235 0.117647 0.176471 0.000000 0.705882 0.000000 1.000000 0.000000 0.000000 0.176471 0.470588 0.176471 0.176471 0.294118 0.176471 0.117647 0.411765 0.000000 0.705882 0.058824 0.235294 0.176471 0.117647 0.705882 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.529412 0.000000 0.470588 0.000000 0.411765 0.000000 0.588235 0.000000 0.117647 0.000000 0.882353 0.000000 0.588235 0.294118 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTYTTCCWCGTYYTS MEME-3 regular expression -------------------------------------------------------------------------------- C[TC][TA][CT]TTCC[TA][CT]GT[CT][TC]T[CG] -------------------------------------------------------------------------------- Time 124.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- dnaN 1.84e-02 85_[+2(2.00e-05)]_5 cds-WP_011947911.1 2.26e-01 100 dnaX 2.52e-01 100 cds-WP_003359494.1 9.81e-02 87_[+2(5.93e-05)]_3 cds-WP_003404855.1 1.22e-02 86_[+2(6.81e-06)]_4 cds-WP_011947938.1 1.46e-01 87_[+2(9.42e-05)]_3 cds-WP_011947952.1 3.53e-01 100 cds-WP_003356351.1 2.89e-01 100 rho 2.38e-02 85_[+2(1.39e-05)]_5 rpmE 9.71e-03 84_[+1(7.00e-05)]_7 cds-WP_011947984.1 1.36e-01 100 cds-WP_003356899.1 7.32e-02 86_[+2(4.30e-05)]_4 atpE 1.93e-02 85_[+2(5.73e-06)]_5 cds-WP_003355885.1 7.20e-02 83_[+2(3.80e-05)]_7 cds-WP_011947988.1 4.83e-01 100 atpA 1.47e-01 100 atpG 1.17e-02 87_[+2(3.94e-06)]_3 atpD 9.39e-03 87_[+2(2.83e-06)]_3 cds-WP_003387838.1 2.33e-02 85_[+2(2.95e-05)]_5 cds-WP_011947999.1 8.18e-02 88_[+2(4.58e-05)]_2 cds-WP_003355819.1 1.21e-01 86_[+2(7.45e-05)]_4 rpoN 1.38e-02 76_[+2(3.94e-06)]_14 cds-WP_003399034.1 2.08e-01 100 cds-WP_003390961.1 2.04e-01 100 cds-WP_011948050.1 6.06e-02 87_[+2(2.70e-05)]_3 cds-WP_011948062.1 8.40e-01 100 cds-WP_011948063.1 2.09e-02 24_[+2(5.93e-05)]_66 cds-WP_011948072.1 1.39e-01 85_[+2(9.42e-05)]_5 cds-WP_003355791.1 6.25e-01 100 cds-WP_011948077.1 1.06e-01 86_[+2(5.93e-05)]_4 cds-WP_003362768.1 2.84e-01 100 cds-WP_011948118.1 3.43e-02 83_[+2(1.39e-05)]_7 cds-WP_003362795.1 4.71e-01 100 cds-WP_011948172.1 1.84e-01 100 cds-WP_011948175.1 2.83e-03 83_[+2(5.27e-07)]_7 cds-WP_003355838.1 4.21e-01 100 cds-CBO_RS18635 3.24e-01 100 cds-WP_011948219.1 3.54e-02 87_[+2(1.62e-05)]_3 cds-WP_003359683.1 5.91e-01 100 cds-WP_011948232.1 1.07e-01 85_[+2(8.20e-05)]_5 cds-WP_003359806.1 4.20e-02 86_[+1(7.61e-05)]_5 cds-WP_011986143.1 2.73e-04 6_[+3(5.68e-08)]_78 cds-WP_003403434.1 3.58e-02 86_[+2(1.39e-05)]_4 cds-WP_011948324.1 8.90e-01 100 cds-WP_011948327.1 1.69e-01 100 cds-WP_011948333.1 1.25e-01 86_[+2(7.45e-05)]_4 cds-WP_011948348.1 4.14e-02 86_[+2(1.62e-05)]_4 cds-WP_003356776.1 6.21e-02 83_[+1(6.01e-05)]_8 cds-WP_011948365.1 1.13e-02 86_[+1(3.44e-05)]_5 cds-WP_011948369.1 3.31e-02 86_[+2(1.62e-05)]_4 cds-WP_011948372.1 6.47e-04 87_[+2(2.43e-07)]_3 cds-WP_011948378.1 4.90e-02 88_[+2(8.20e-05)]_2 greA 8.27e-02 82_[+2(6.63e-05)]_8 cds-WP_230869867.1 1.04e-02 34_[+2(1.28e-05)]_56 cds-WP_225900976.1 2.84e-01 100 cds-WP_011948438.1 3.66e-02 86_[+2(2.25e-05)]_4 cds-WP_011948452.1 1.54e-02 84_[+1(4.70e-05)]_7 cds-WP_011948453.1 5.08e-01 100 cds-WP_011948466.1 9.76e-03 86_[+2(2.99e-06)]_4 cds-WP_003387694.1 8.20e-03 87_[+2(5.73e-06)]_3 cds-WP_011948471.1 1.96e-01 100 cds-WP_011948534.1 1.30e-01 85_[+2(9.42e-05)]_5 cds-WP_011948541.1 1.94e-01 100 cds-WP_242649196.1 5.04e-01 100 cds-WP_011948547.1 5.06e-02 68_[+2(4.30e-05)]_7_[+2(4.30e-05)]_\ 5 cds-WP_003399301.1 3.73e-02 88_[+1(5.47e-05)]_3 cds-WP_003357080.1 7.69e-02 100 cds-WP_011948557.1 4.01e-02 77_[+2(1.62e-05)]_13 cds-WP_011948563.1 4.46e-03 86_[+2(2.83e-06)]_4 cds-WP_011948567.1 9.78e-02 100 cds-WP_011948570.1 3.30e-02 80_[+2(3.46e-05)]_10 cds-WP_079995886.1 1.97e-06 85_[+2(4.61e-08)]_5 cds-WP_011948597.1 2.82e-03 85_[+2(5.11e-07)]_5 cds-WP_011948600.1 2.13e-02 84_[+1(4.03e-05)]_7 cds-WP_011948616.1 2.73e-01 100 cds-WP_011948628.1 2.34e-02 85_[+2(1.28e-05)]_5 cds-WP_011948668.1 9.92e-02 88_[+2(5.93e-05)]_2 cds-WP_011948696.1 1.52e-01 100 cds-WP_236883822.1 7.91e-01 100 cds-WP_011948703.1 2.59e-01 100 cds-WP_003356424.1 5.98e-01 100 cds-WP_011948759.1 2.05e-01 100 cds-WP_011948763.1 2.57e-02 84_[+2(9.60e-06)]_6 cds-WP_011948772.1 2.41e-01 100 rpsA 3.84e-01 100 cds-WP_003356138.1 4.46e-02 86_[+2(1.73e-05)]_4 cds-WP_011948833.1 3.21e-03 85_[+2(1.08e-05)]_5 cds-WP_011948840.1 4.15e-02 84_[+2(3.80e-05)]_6 cds-WP_011948844.1 9.82e-02 85_[+2(6.63e-05)]_5 cds-WP_003356834.1 6.23e-02 100 cds-WP_011948871.1 1.92e-04 85_[+2(4.61e-08)]_5 mtnA 2.59e-02 83_[+2(1.73e-05)]_7 cds-WP_011948894.1 1.17e-01 100 cds-WP_003358748.1 3.83e-01 100 cds-WP_003358712.1 1.85e-01 100 cds-WP_011948948.1 2.41e-01 100 ychF 9.97e-01 100 cds-WP_003393623.1 9.65e-02 86_[+2(9.42e-05)]_4 cds-WP_003358553.1 1.14e-01 100 cds-WP_011949080.1 2.14e-02 87_[+2(1.28e-05)]_3 cds-WP_003388928.1 6.13e-01 100 cds-WP_011949087.1 2.61e-01 100 cds-WP_011949091.1 7.30e-02 87_[+2(3.46e-05)]_3 cds-CBO_RS07675 2.40e-01 100 cds-WP_011949098.1 1.30e-02 100 cds-WP_011949106.1 2.05e-01 100 cds-WP_011949120.1 3.64e-01 100 cds-WP_011949137.1 1.49e-01 100 cds-WP_011949138.1 2.61e-01 100 cds-WP_011986272.1 9.91e-02 100 cds-WP_011949150.1 1.74e-01 100 cds-WP_011949159.1 7.09e-01 100 cds-WP_011986282.1 4.31e-03 86_[+2(4.30e-05)]_4 cds-WP_011986286.1 5.15e-01 100 cds-WP_011986294.1 5.90e-01 100 cds-WP_164928177.1 6.70e-01 100 cds-WP_012047595.1 2.54e-01 100 cds-WP_003395988.1 5.38e-02 22_[+2(4.58e-05)]_49_[+2(2.25e-05)]_\ 9 cds-WP_011986310.1 6.76e-01 100 cds-WP_011986315.1 1.32e-01 85_[+2(8.20e-05)]_5 lexA 8.37e-02 86_[+2(8.20e-05)]_4 cds-WP_003392901.1 6.77e-02 84_[+2(3.80e-05)]_6 cds-WP_012047676.1 5.39e-01 100 cds-WP_003358959.1 6.95e-01 100 scpB 3.54e-02 100 nusB 1.23e-02 88_[+1(4.03e-05)]_3 efp 9.81e-02 100 cds-WP_003358480.1 7.69e-03 87_[+2(5.73e-06)]_3 cds-WP_011986476.1 1.95e-03 18_[+3(2.68e-05)]_66 cds-WP_011986487.1 2.33e-02 100 cds-WP_011986494.1 4.58e-02 100 cds-WP_011986498.1 5.35e-01 100 cds-WP_003385301.1 7.40e-03 23_[+1(2.81e-05)]_68 treR 1.27e-01 100 cds-WP_012047704.1 1.16e-01 100 cds-WP_003358481.1 1.17e-02 85_[+1(3.36e-05)]_6 cds-WP_011986542.1 1.37e-02 23_[+1(2.24e-05)]_68 cds-WP_011986544.1 1.25e-01 100 cds-WP_011986554.1 6.08e-01 100 cds-WP_011986562.1 4.21e-02 87_[+1(3.36e-05)]_4 cds-WP_003358306.1 1.08e-03 86_[+1(6.87e-06)]_5 cds-WP_003384878.1 9.21e-02 81_[+1(8.48e-05)]_10 cds-WP_011986616.1 5.79e-01 100 cds-WP_003402124.1 1.30e-01 87_[+1(9.16e-05)]_4 cds-WP_003358234.1 9.66e-03 83_[+1(2.24e-05)]_8 cds-WP_011986653.1 2.71e-01 100 cds-WP_011986682.1 1.86e-01 100 cds-WP_011986684.1 1.76e-01 100 cds-WP_012047750.1 1.31e-01 100 cds-WP_012047752.1 4.77e-02 100 cds-WP_003391706.1 3.58e-02 100 cds-WP_003358274.1 2.44e-01 100 cds-WP_011986719.1 2.37e-02 84_[+2(3.46e-05)]_6 cds-WP_011986731.1 3.38e-01 100 cds-WP_011986754.1 7.34e-02 87_[+2(3.46e-05)]_3 cds-WP_011986758.1 2.68e-01 100 cds-WP_011986765.1 9.95e-03 100 cds-WP_003395350.1 9.94e-06 52_[+3(3.52e-07)]_17_[+1(7.61e-05)]_\ 6 cds-WP_011986767.1 5.22e-02 100 cds-WP_011986769.1 3.87e-02 85_[+2(2.25e-05)]_5 cds-WP_156226176.1 9.22e-01 100 cds-WP_012047775.1 5.51e-02 100 cds-WP_041350636.1 2.10e-02 75_[+3(3.52e-05)]_9 cds-WP_012047847.1 3.64e-03 84_[+1(1.50e-06)]_7 cds-WP_012047848.1 1.75e-02 85_[+2(9.60e-06)]_5 cds-WP_012047850.1 7.26e-02 90_[+2(8.20e-05)] rpsO 3.66e-02 85_[+1(7.61e-05)]_6 infB 2.89e-01 100 cds-WP_004440225.1 2.37e-01 100 cds-WP_003388362.1 2.52e-03 2_[+3(8.04e-06)]_82 nusA 1.16e-02 82_[+1(3.36e-05)]_9 cds-WP_011986794.1 7.59e-02 87_[+1(4.70e-05)]_4 tsf 7.24e-03 85_[+1(4.70e-05)]_6 rpsB 2.09e-04 68_[+3(3.33e-05)]_2_[+1(1.09e-05)]_\ 5 codY 1.52e-05 37_[+3(6.00e-07)]_33_[+1(2.24e-05)]_\ 5 rplS 5.93e-04 84_[+1(6.87e-06)]_7 rpsP 8.41e-04 85_[+1(1.50e-06)]_6 rpmF 4.07e-04 85_[+1(1.50e-06)]_6 cds-WP_003388461.1 1.67e-01 100 rpmB 5.00e-03 84_[+2(1.50e-06)]_6 rpoZ 2.01e-02 84_[+1(2.24e-05)]_7 cds-WP_257262151.1 9.92e-01 100 nrdR 2.51e-01 100 sigG 4.99e-01 100 sigE 1.22e-02 86_[+1(2.24e-05)]_5 sigK 2.82e-03 85_[+1(1.58e-05)]_6 cds-WP_003391911.1 5.51e-01 100 cds-WP_011986902.1 3.42e-04 84_[+1(1.50e-06)]_7 cds-WP_011986903.1 5.41e-01 100 cds-WP_011986937.1 1.92e-07 19_[+3(4.87e-07)]_50_[+1(1.58e-05)]_\ 6 cds-WP_003404508.1 1.20e-02 86_[+1(6.39e-05)]_5 cds-WP_011986984.1 2.40e-01 100 rfbF 2.36e-02 85_[+1(2.81e-05)]_6 cds-WP_011987038.1 7.06e-03 64_[+1(5.47e-05)]_14_[+1(9.16e-05)]_\ 4 cds-WP_011987040.1 6.24e-04 28_[+3(7.34e-07)]_56 cds-WP_011987070.1 1.03e-01 86_[+1(7.61e-05)]_5 cds-WP_011987090.1 2.71e-01 100 cds-WP_011987095.1 1.21e-04 8_[+3(3.19e-06)]_76 cds-WP_011987106.1 1.29e-01 100 cds-WP_011987107.1 8.26e-02 86_[+2(5.26e-05)]_4 cds-WP_012047951.1 8.00e-01 100 cds-WP_012047976.1 5.71e-01 100 rpoD 1.27e-02 82_[+1(6.39e-05)]_9 rpsU 7.99e-04 85_[+1(1.58e-05)]_6 prmA 3.22e-02 85_[+1(2.24e-05)]_6 hrcA 3.79e-02 81_[+1(7.00e-05)]_10 rpsT 1.95e-03 86_[+2(3.46e-05)]_4 holA 3.82e-01 100 selB 6.56e-01 100 cds-WP_003357849.1 6.53e-02 85_[+1(6.39e-05)]_6 cds-WP_012048020.1 4.04e-01 100 rpmA 4.71e-04 86_[+1(2.02e-06)]_5 cds-WP_012048022.1 9.44e-01 100 rplU 1.54e-03 85_[+1(2.02e-06)]_6 polA 1.70e-01 100 cds-WP_012099500.1 1.66e-01 100 cds-WP_230869885.1 8.79e-01 100 cds-WP_012048092.1 3.93e-01 100 sigF 5.29e-02 100 cds-WP_012048124.1 7.96e-02 86_[+1(9.16e-05)]_5 rplT 6.38e-03 84_[+1(1.09e-05)]_7 rpmI 5.78e-03 85_[+1(5.47e-05)]_6 infC 9.74e-01 100 cds-WP_003357340.1 6.39e-01 100 cds-WP_012048183.1 6.76e-02 85_[+1(5.47e-05)]_6 cds-WP_003357370.1 1.67e-02 85_[+1(7.61e-05)]_6 cds-WP_012048201.1 1.03e-01 86_[+1(7.00e-05)]_5 cds-WP_012048232.1 3.10e-01 100 cds-CBO_RS18725 6.75e-01 100 cds-WP_012048290.1 9.40e-03 86_[+1(1.58e-05)]_5 cds-WP_012048304.1 9.76e-02 100 cds-WP_003360267.1 2.73e-02 84_[+1(2.81e-05)]_7 rpsD 3.51e-02 88_[+1(4.70e-05)]_3 cds-WP_012048331.1 3.38e-02 100 cds-WP_012048343.1 3.01e-02 86_[+2(2.95e-05)]_4 rpsI 1.94e-04 12_[+3(2.93e-06)]_58_[+1(8.48e-05)]_\ 5 rplM 1.09e-02 86_[+1(1.58e-05)]_5 rplQ 8.43e-05 82_[+3(8.62e-06)]_2 cds-WP_003357472.1 9.97e-03 86_[+1(3.44e-05)]_5 rpsD_2 3.91e-04 82_[+1(6.87e-06)]_9 rpsK 4.98e-05 86_[+1(6.87e-06)]_5 rpsM 3.44e-02 82_[+1(4.03e-05)]_9 rpmJ 1.29e-05 85_[+1(4.19e-07)]_6 infA 2.55e-02 81_[+1(3.36e-05)]_10 cds-WP_003357464.1 3.15e-02 100 rplO 4.64e-05 84_[+1(2.02e-06)]_7 rpmD 3.84e-03 84_[+1(2.81e-05)]_7 rpsE 2.44e-07 47_[+3(2.10e-08)]_23_[+1(6.87e-06)]_\ 5 rplR 7.83e-02 100 rplF 4.87e-06 20_[+3(1.14e-05)]_5_[+3(8.96e-07)]_\ 28_[+1(6.87e-06)]_6 rpsH 2.65e-03 85_[+1(3.36e-05)]_6 cds-WP_003357636.1 8.83e-07 30_[+3(9.59e-08)]_40_[+1(6.87e-06)]_\ 5 rplE 1.53e-05 27_[+3(1.32e-06)]_42_[+1(1.09e-05)]_\ 6 rplX 4.04e-06 5_[+3(2.08e-06)]_62_[+1(1.50e-06)]_\ 8 rplN 2.50e-03 84_[+1(2.81e-05)]_7 rpsQ 1.13e-04 49_[+3(6.45e-06)]_20_[+1(2.24e-05)]_\ 6 rpmC 1.14e-02 100 rplP 6.40e-03 85_[+1(2.24e-05)]_6 rpsC 1.81e-03 86_[+1(1.14e-05)]_5 rplV 1.19e-03 84_[+1(1.09e-05)]_7 rpsS 4.10e-03 85_[+1(5.47e-05)]_6 rplB 9.77e-05 86_[+1(6.87e-06)]_5 rplW 3.67e-03 83_[+1(2.02e-06)]_8 rplD 1.41e-05 16_[+3(2.23e-07)]_54_[+1(5.47e-05)]_\ 5 rplC 2.25e-05 84_[+1(2.02e-06)]_7 rpsJ 3.08e-03 84_[+1(6.87e-06)]_7 tuf 4.61e-04 10_[+3(3.33e-05)]_59_[+1(2.24e-05)]_\ 6 fusA 1.41e-02 85_[+1(7.61e-05)]_6 rpsG 2.17e-03 85_[+1(6.87e-06)]_6 rpsL 1.79e-03 86_[+1(1.50e-06)]_5 cds-WP_012048355.1 5.68e-03 84_[+1(4.03e-05)]_7 rpoC 1.19e-04 2_[+3(1.91e-06)]_67_[+1(8.48e-05)]_\ 6 rpoB 2.56e-01 100 rplL 3.11e-02 83_[+1(7.61e-05)]_8 rplJ 4.64e-04 83_[+1(2.02e-06)]_8 rplA 3.44e-03 59_[+1(4.70e-05)]_18_[+1(2.24e-05)]_\ 5 rplK 3.90e-03 85_[+1(6.87e-06)]_6 nusG 3.46e-03 64_[+1(6.87e-06)]_27 rpmG 1.73e-04 48_[+3(4.10e-05)]_21_[+1(6.87e-06)]_\ 6 tuf_2 8.92e-03 85_[+1(2.24e-05)]_6 sigH 1.38e-02 86_[+1(3.68e-05)]_5 cds-WP_003357349.1 1.23e-02 79_[+3(6.28e-05)]_5 fusA_2 1.12e-01 86_[+1(8.48e-05)]_5 greA_2 2.50e-02 100 cds-WP_003359441.1 1.44e-02 85_[+1(7.61e-05)]_6 cds-WP_003359471.1 4.81e-03 81_[+1(4.27e-06)]_10 mfd 5.66e-04 19_[+3(2.47e-06)]_65 cds-WP_012048397.1 1.24e-01 100 cds-WP_003400977.1 6.10e-02 85_[+2(2.70e-05)]_5 cds-WP_003359449.1 2.67e-02 86_[+2(1.28e-05)]_4 cds-WP_003359341.1 3.11e-02 100 cds-WP_012048431.1 6.51e-02 100 rplI 2.31e-02 100 rpsR 2.71e-04 86_[+1(6.87e-06)]_5 rpsF 1.59e-03 85_[+1(2.02e-06)]_6 cds-WP_012048450.1 4.13e-05 28_[+3(8.10e-07)]_41_[+1(5.47e-05)]_\ 6 noc 5.29e-02 100 rpmH 3.09e-03 83_[+1(1.50e-06)]_8 cds-WP_011949166.1 8.08e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kodomo ********************************************************************************