FastQCFastQC Report
Пт 2 мар 2018
chr16_trimmomatic.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenamechr16_trimmomatic.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3798
Sequences flagged as poor quality0
Sequence length50-100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGCCAAACCTTCAGCCAGAGTTGCAGACAGAGCCATCGTGGCAGCCG70.18430753027909424No Hit
GTGGCAGCCGGAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAAC70.18430753027909424No Hit
CAGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGG60.1579778830963665No Hit
CACCTCCTTAAAGGGTACCTGAGCTCCACGTCTTGGTTTTGTACACCTGC60.1579778830963665No Hit
TGCACCCGCCATTGCCAAACCTTCAGCCAGAGTTGCAGACAGAGCCATCG60.1579778830963665No Hit
GAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAACCCAACTGGAG60.1579778830963665No Hit
AGAACCAGGAAGAGAACATGCAGAAGGCACTAAGCTTCCTGGGCCCCTCA50.13164823591363875No Hit
AGGATGGTGGGCCGCATGGGAGAGTGGTGGGAGTTCATAGTCTTTTTGTG50.13164823591363875No Hit
TACACCTGCTGGATCCTCTTGGCCATTTTTTTCTTTTTCAGCTTGCCTTC50.13164823591363875No Hit
CCTCTTGGCCATTTTTTTCTTTTTCAGCTTGCCTTCCAAGTTCTTTCTGT50.13164823591363875No Hit
GGAGCCCACAGCTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCC50.13164823591363875No Hit
GGCCACCAGAGCCAGAGTCCCAACACTAGTCCACCACCAAAGCGCCACAA50.13164823591363875No Hit
TAGTCTTTTTGTGGCGCTTTGGTGGTGGACTAGTGTTGGGACTCTGGCTC40.105318588730911No Hit
AAAAAAAAGAATATTACTATGGGCTTTTCTTCTTTTTCTAGGAAAGTATG40.105318588730911No Hit
TACTATGGGCTTTTCTTCTTTTTCTAGGAAAGTATGTGATGGTGATGGGA40.105318588730911No Hit
AGGGTGGGGAGGACAGGGGCAGTAATGCCATTTGCCTGCCTGCATTCTCT40.105318588730911No Hit
TAGCAACTCTCAGCCCCAAAGCCGCACCTGCACCCGCCATTGCCAAACCT40.105318588730911No Hit
GGTGGCCCTTCCCCACCTCCTTAAAGGGTACCTGAGCTCCGCGTCTTGGT40.105318588730911No Hit
AAAGGCTGCAGAACCAGGAAGAGAACATGCAGAAGGCACTAAGCTTCCTG40.105318588730911No Hit
CCTTCCCCACCTCCTTAAAGGGTACCTGAGCTCCGCGTCTTGGTTTTGTA40.105318588730911No Hit
CCGCATGGGAGAGTGGTGGGAGTTCATAGTCTTTTTGTGGCGCTTTGGTG40.105318588730911No Hit
CTTGGCCATTTTTTTCTTTTTCAGCTTGCCTTCCAAGTTCTTTCTGTTCT40.105318588730911No Hit
CTTCTTGCCTGTGGTTCCTTTGTGACCTGGCTGCAACCTTCCTCTCACTG40.105318588730911No Hit
GCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGGCCACCAGAG40.105318588730911No Hit
CTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCCACCACCAAAGC40.105318588730911No Hit
GTACCTTTGGAAGCAAGTCCCTGAGACATTGGTGATCCAACAACAGCTTC40.105318588730911No Hit
CAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCA40.105318588730911No Hit
GCCCACAGCTCATCCGGCCACCAGAGCCAGAGTCCCAACACTAGTCCACC40.105318588730911No Hit
ACTCTGTCTCAAAAGAAGAAAAAAAAAAGAATATTACTATGGGCTTTTCT40.105318588730911No Hit
GGCGTTGATTTCTGGCATTTTTGAAGGACTCTTCACATTGCACACCAGAT40.105318588730911No Hit
ATCGTGGCAGCCGGAGCCAGAGCTCCAGCCAGAGCCCGGCCAGCCACCGC40.105318588730911No Hit
AGAGCCCGGCCAGCCACCGCAACCCAACTGGAGCCCACAGCTCATCCGGC40.105318588730911No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)