TBLASTN 2.2.25+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: gt_genome.fasta
           1 sequences; 3,550,319 total letters



Query= sp|P10943|HUTP_BACSU Hut operon positive regulatory protein
OS=Bacillus subtilis (strain 168) GN=hutP PE=1 SV=4

Length=148
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, com...   182    1e-47


> CP000557 CP000557.1 Geobacillus thermodenitrificans NG80-2, complete 
genome.
Length=3550319

 Score =  182 bits (462),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 88/149 (60%), Positives = 113/149 (76%), Gaps = 1/149 (0%)
 Frame = +3

Query  1       MTLHKERRIGRLSVLL-LLNEAEESTQVEELERDGWKVCLGKVGSMDAHKVVAAIETASK  59
               M   K  RIGR ++LL +L+E EE   ++EL    W+ C G+VG+M+  K+VAAIETA+K
Sbjct  410832  MGKEKSVRIGRQALLLAMLDEGEEGAILDELRASNWRYCQGRVGAMEPQKIVAAIETAAK  411011

Query  60      KSGVIQSEGYRESHALYHATMEALHGVTRGEMLLGSLLRTVGLRFAVLRGNPYESEAEGD  119
               +  V+    YR+ HALYHA +EA+HGVTRG++ LG LLRT GLRFAV+RG PYE   EG+
Sbjct  411012  RHEVVDGSLYRDMHALYHAILEAVHGVTRGQVELGDLLRTAGLRFAVVRGTPYEQPKEGE  411191

Query  120     WIAVSLYGTIGAPIKGLEHETFGVGINHI  148
               WIAV+LYGTIGAP++GLEHE  G+GINHI
Sbjct  411192  WIAVALYGTIGAPVRGLEHEAVGLGINHI  411278



Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 84018702


  Database: gt_genome.fasta
    Posted date:  Oct 23, 2012  9:37 PM
  Number of letters in database: 3,550,319
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40