Running MakePangenome..
Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 16988 = 16988

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 3 / 1 = 3
Block identity: number=1 all=1
Identity of joined blocks: 1
Length of fragments: 1407 (0.02%)
Total length of blocks: 469 (2.76%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 1335714 = 1335714

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 306 / 102 = 3
Block identity: number=102 min=0.968 median=0.9967 avg=0.996 max=1
Identity of joined blocks: 0.996629
Length of fragments: 3856725 (60.67%)
Total length of blocks: 1286162 (96.29%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2052936 = 2052936

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 498 / 166 = 3
Block identity: number=166 min=0.968 median=0.9967 avg=0.9962 max=1
Identity of joined blocks: 0.996618
Length of fragments: 5981837 (94.1%)
Total length of blocks: 1994816 (97.16%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2080753 = 2080753

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 510 / 170 = 3
Block identity: number=170 min=0.968 median=0.9967 avg=0.9962 max=1
Identity of joined blocks: 0.99662
Length of fragments: 6032299 (94.9%)
Total length of blocks: 2011649 (96.67%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2102099 = 2102099

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 549 / 183 = 3
Block identity: number=183 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996619
Length of fragments: 6094405 (95.87%)
Total length of blocks: 2032372 (96.68%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2102044 = 2102044

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 549 / 183 = 3
Block identity: number=183 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996619
Length of fragments: 6094441 (95.87%)
Total length of blocks: 2032384 (96.68%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2102145 = 2102145

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 549 / 183 = 3
Block identity: number=183 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996619
Length of fragments: 6094441 (95.87%)
Total length of blocks: 2032384 (96.68%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2102036 = 2102036

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 555 / 185 = 3
Block identity: number=185 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996617
Length of fragments: 6093806 (95.86%)
Total length of blocks: 2032170 (96.67%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2101953 = 2101953

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 555 / 185 = 3
Block identity: number=185 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996616
Length of fragments: 6093878 (95.87%)
Total length of blocks: 2032194 (96.68%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2102232 = 2102232

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 549 / 183 = 3
Block identity: number=183 min=0.968 median=0.9967 avg=0.9962 max=1
Identity of joined blocks: 0.996613
Length of fragments: 6094718 (95.88%)
Total length of blocks: 2032474 (96.68%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2102118 = 2102118

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 552 / 184 = 3
Block identity: number=184 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996614
Length of fragments: 6094065 (95.87%)
Total length of blocks: 2032255 (96.67%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2102118 = 2102118

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 552 / 184 = 3
Block identity: number=184 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996614
Length of fragments: 6094065 (95.87%)
Total length of blocks: 2032255 (96.67%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 0 + 2102118 = 2102118

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 552 / 184 = 3
Block identity: number=184 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996614
Length of fragments: 6094065 (95.87%)
Total length of blocks: 2032255 (96.67%)

Number of sequences: 3
Sequence lengths: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Total length of sequences: 6356372
Genomes: number=3 min=2105969 median=2111370 avg=2118790.67 max=2139033
Blocks' lengths: unique + regular = 10651 + 2102118 = 2112769

Exact stem blocks (represented in all genomes) but not minor:
fragments / blocks = 552 / 184 = 3
Block identity: number=184 min=0.968 median=0.9968 avg=0.9962 max=1
Identity of joined blocks: 0.996614
Length of fragments: 6094065 (95.87%)
Total length of blocks: 2032255 (96.18%)

.. done