RID: AYYS7W7J016 Job Title:POLN_SLDV Q8QL53 Polyprotein P1234 (mRNA-capping... Program: BLASTP Query: POLN_SLDV Q8QL53 Polyprotein P1234 (mRNA-capping enzyme nsP1) ID: lcl|Query_73058(amino acid) Length: 561 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 1143 1143 100% 0.0 100.00 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 1088 1088 99% 0.0 95.37 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 459 459 82% 8e-143 49.57 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 459 459 81% 9e-143 51.52 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 458 458 81% 2e-142 51.30 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 442 442 82% 5e-137 48.27 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 441 441 81% 2e-136 50.65 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 440 440 91% 3e-136 45.31 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 437 437 81% 5e-135 50.43 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 436 436 82% 7e-135 49.46 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 436 436 82% 1e-134 49.46 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 436 436 81% 1e-134 48.91 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 432 432 82% 2e-133 49.02 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 429 429 96% 3e-132 43.57 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 427 427 96% 1e-131 43.38 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 427 427 80% 2e-131 48.02 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 426 426 96% 3e-131 43.38 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 424 424 80% 2e-130 47.80 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 418 418 93% 2e-128 44.11 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 416 416 93% 7e-128 43.92 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 411 411 80% 3e-126 48.01 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 409 409 82% 2e-125 46.75 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 407 407 80% 7e-125 48.01 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 407 407 82% 1e-124 46.34 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 405 405 80% 7e-124 47.35 2467 P13896.3 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1 to 561 Score:1143 bits(2957), Expect:0.0, Method:Compositional matrix adjust., Identities:561/561(100%), Positives:561/561(100%), Gaps:0/561(0%) Query 1 MMLNLTANPSAGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK 60 MMLNLTANPSAGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK Sbjct 1 MMLNLTANPSAGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK 60 Query 61 WIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEK 120 WIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEK Sbjct 61 WIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEK 120 Query 121 GDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA 180 GDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA Sbjct 121 GDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA 180 Query 181 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW 240 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW Sbjct 181 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW 240 Query 241 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG 300 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG Sbjct 241 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG 300 Query 301 YVVKKITICEGIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM 360 YVVKKITICEGIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM Sbjct 301 YVVKKITICEGIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM 360 Query 361 TAMTADPVKYPDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDM 420 TAMTADPVKYPDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDM Sbjct 361 TAMTADPVKYPDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDM 420 Query 421 EDEQDMYGVTSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYln 480 EDEQDMYGVTSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLN Sbjct 421 EDEQDMYGVTSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYLN 480 Query 481 lplkqlllntlkRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQ 540 LPLKQLLLNTLKRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQ Sbjct 481 LPLKQLLLNTLKRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQ 540 Query 541 DDEEEVDDGMSNVDLGEEDGV 561 DDEEEVDDGMSNVDLGEEDGV Sbjct 541 DDEEEVDDGMSNVDLGEEDGV 561 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1 to 561 Score:1088 bits(2813), Expect:0.0, Method:Compositional matrix adjust., Identities:535/561(95%), Positives:547/561(97%), Gaps:1/561(0%) Query 1 MMLNLTANPSAGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK 60 MM NLTANPSAG TVTV+LPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK Sbjct 1 MMQNLTANPSAGATVTVNLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATK 60 Query 61 WIERDIDGRQVIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEK 120 WIERDI GRQVIVADIGSAPARR+GAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVE+ Sbjct 61 WIERDIGGRQVIVADIGSAPARRIGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVER 120 Query 121 GDGHLVSDRITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA 180 GDGHLV+++ITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA Sbjct 121 GDGHLVNEKITDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYA 180 Query 181 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW 240 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW Sbjct 181 QADKGTRVVYWIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKW 240 Query 241 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG 300 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG Sbjct 241 RFRFRDKPLVPSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGG 300 Query 301 YVVKKITICEGIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM 360 YVVKKITICEGIVG PA EELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM Sbjct 301 YVVKKITICEGIVGIPAKEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQM 360 Query 361 TAMTADPVKYPDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDM 420 TAMTA+PVKY D VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADE RRDM Sbjct 361 TAMTANPVKYSDAVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEVRRDM 420 Query 421 EDEQDMYGVTSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYln 480 EDEQD+YG+TSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRA+LSATYLN Sbjct 421 EDEQDLYGITSVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRAALSATYLN 480 Query 481 lplkqlllntlkRAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQ 540 LPLKQLLLNTLKRAIKP DQA+ADETEA AHDAAEVHELTEEE RQQAANPSYIADVLGQ Sbjct 481 LPLKQLLLNTLKRAIKPMDQAIADETEALAHDAAEVHELTEEERRQQAANPSYIADVLGQ 540 Query 541 -DDEEEVDDGMSNVDLGEEDG 560 DDEEE DGMS+VDLGEEDG Sbjct 541 DDDEEEAGDGMSDVDLGEEDG 561 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 2 to 453 Score:459 bits(1181), Expect:8e-143, Method:Compositional matrix adjust., Identities:230/464(50%), Positives:302/464(65%), Gaps:12/464(2%) Query 11 AGTTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQ 70 A V +D+ + Q ++ FP FE+ A + NDHA ARAFSHLATK IE + Q Sbjct 2 AKPVVKIDVEPESHFAKQVQSCFPQFEIEAVQTTPNDHAHARAFSHLATKLIEMETAKDQ 61 Query 71 VIVADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRI 130 +I+ DIGSAPARR+ + YH VCP KC EDPER+ YARKL+ KG ++++ Sbjct 62 IIL-DIGSAPARRLYSEHK--YHCVCPMKCTEDPERMLGYARKLIAGSAKGK----AEKL 114 Query 131 TDLKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVY 190 DL+DVL PD +ET S+CL+ D SC+ + D+AVYQDVYA+DAP+T+Y QA KG R Y Sbjct 115 RDLRDVLATPD--IETQSLCLHTDASCRYRGDVAVYQDVYAIDAPTTLYHQALKGVRTAY 172 Query 191 WIGFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLV 250 WIGF+ F DA+AG++PLY NW+D VL ++N+ LC +SE K R R K L Sbjct 173 WIGFDTTPFMYDALAGAYPLYSTNWADEQVLESRNIGLCSDKVSEGGKKGRSILRKKFLK 232 Query 251 PSGEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICE 310 S + +SVGST Y E R L+SWHLPSTFH + +TCRCDT+VSC GYV+KKIT+C Sbjct 233 QSDRVMFSVGSTLYTESRKLLQSWHLPSTFHLKGKSSFTCRCDTIVSCEGYVLKKITMCP 292 Query 311 GIVGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKY 370 G+ G+P A ++H++G VV K +DTI E+VSF V TY+P +CDQMT + A V Sbjct 293 GVTGKPIG--YAVTHHKEGFVVGKVTDTIRGERVSFAVCTYVPTTLCDQMTGILATEVTA 350 Query 371 PDVVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVT 430 D KLLVGLNQRIVVNG T RN N+M N L+P+ A+AL WA EA++DMEDE+ + Sbjct 351 DDAQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPLVAQALAKWAKEAKQDMEDERPLNERQ 410 Query 431 SVTTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 T +C C A+ + ++H Y+RP S + VP +FT SL Sbjct 411 RTLTCLC-CWAFKRNKRHAIYKRPDTQSIVKVPCEFTSFPLVSL 453 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 3 to 454 Score:459 bits(1181), Expect:9e-143, Method:Compositional matrix adjust., Identities:237/460(52%), Positives:303/460(65%), Gaps:8/460(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 VTVD+ AD P L + AFP FEV + + NDHA ARAFSHLATK IE+++ V + Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPT-GVTIL 61 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 D+GSAPARR+ + + TYH +CP K AEDPERLA+YARKL +A VS +ITDL+ Sbjct 62 DVGSAPARRLMS--DHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQ 119 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 DV+ PD LE+ + CL+ D +C+ +A++AVYQDVYAV AP+++Y QA KG R YWIGF Sbjct 120 DVMATPD--LESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGF 177 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F +A+AG++P Y NW+D VL A+N+ LC +GLSE R K L PS Sbjct 178 DTTPFMFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDR 237 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R L+SWHLPS FH N +TCRCDTVVSC GYVVKKITI GI G Sbjct 238 VMFSVGSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYG 297 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + + A ++H +G +V K +DT+ E+VSFPV TY+PA ICDQMT + A V D Sbjct 298 KTV--DYAVTHHAEGFLVCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQ 355 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA EAR DMEDE+ + G T Sbjct 356 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPL-GTRERTL 414 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 C A+ + HT Y+RP+ + + VP+ F + SL Sbjct 415 TCCCLWAFKSHKIHTMYKRPETQTIVKVPSTFDSFVIPSL 454 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 3 to 454 Score:458 bits(1178), Expect:2e-142, Method:Compositional matrix adjust., Identities:236/460(51%), Positives:303/460(65%), Gaps:8/460(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 VTVD+ AD P L + AFP FEV + + NDHA ARAFSHLATK IE+++ V + Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPT-GVTIL 61 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 D+GSAPARR+ + + TYH +CP K AEDPERLA+YARKL +A VS +ITDL+ Sbjct 62 DVGSAPARRLMS--DHTYHCICPMKSAEDPERLANYARKLAKASGTVLDKNVSGKITDLQ 119 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 DV+ PD LE+ + CL+ D +C+ +A++AVYQDVYAV AP+++Y QA KG R YWIGF Sbjct 120 DVMATPD--LESPTFCLHTDETCRTRAEVAVYQDVYAVHAPTSLYHQAIKGVRTAYWIGF 177 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F +A+AG++P Y NW+D VL A+N+ LC +GLSE R K L PS Sbjct 178 DTTPFMFEALAGAYPAYSTNWADEQVLQARNIGLCATGLSEGRRGKLSIMRKKCLRPSDR 237 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R L+SWHLPS FH N +TCRCDTVVSC GYVVKKITI GI G Sbjct 238 VMFSVGSTLYTESRKLLRSWHLPSVFHLKGKNSFTCRCDTVVSCEGYVVKKITISPGIYG 297 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + + A ++H +G ++ K +DT+ E+VSFPV TY+PA ICDQMT + A V D Sbjct 298 KTVD--YAVTHHAEGFLMCKITDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQ 355 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA EAR DMEDE+ + G T Sbjct 356 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREARADMEDEKPL-GTRERTL 414 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 C A+ + HT Y+RP+ + + VP+ F + SL Sbjct 415 TCCCLWAFKSHKIHTMYKRPETQTIVKVPSTFDSFVIPSL 454 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 2 to 455 Score:442 bits(1138), Expect:5e-137, Method:Compositional matrix adjust., Identities:223/462(48%), Positives:299/462(64%), Gaps:8/462(1%) Query 13 TTVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVI 72 + V VD+ A+ P L + AFP FEV A + NDHA ARAFSHLATK IE++ + + + Sbjct 2 SKVFVDIEAESPFLKSLQRAFPAFEVEAQQVTPNDHANARAFSHLATKLIEQETE-KDTL 60 Query 73 VADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITD 132 + DIGSAPARR+ + TYH VCP + AEDPERL YARKL +A + ++ +I D Sbjct 61 ILDIGSAPARRMMSEH--TYHCVCPMRSAEDPERLLYYARKLAKASGEVVDRNIAAKIDD 118 Query 133 LKDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWI 192 L+ V+ PD E+ + CL+ D +C+ +A++AVYQDVYAV AP+++Y QA KG R YWI Sbjct 119 LQSVMATPDN--ESRTFCLHTDQTCRTQAEVAVYQDVYAVHAPTSLYFQAMKGVRTAYWI 176 Query 193 GFEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 GF+ F D MAG++P Y NW+D VL A+N+ LC + L+E + R K + PS Sbjct 177 GFDTTPFMFDTMAGAYPTYATNWADEQVLKARNIGLCSASLTEGHLGKLSIMRKKKMTPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 +I +SVGST Y+E R LKSWHLPS FH YTCRCDT+VSC GYVVKKIT+ G+ Sbjct 237 DQIMFSVGSTLYIESRRLLKSWHLPSVFHLKGRQSYTCRCDTIVSCEGYVVKKITMSPGV 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+ + A ++H +G +V K +DTI E+VSFP+ TY+P+ ICDQMT + A V D Sbjct 297 FGKTSG--YAVTHHAEGFLVCKTTDTIAGERVSFPICTYVPSTICDQMTGILATEVTPED 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV ++A WA E R D EDE++M G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVSQAFSKWAKEYRLDQEDEKNM-GMRER 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 T C A+ + HT Y++P + + VP++F + SL Sbjct 414 TLTCCCLWAFKTHKNHTMYKKPDTQTIVKVPSEFNSFVIPSL 455 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 4 to 455 Score:441 bits(1133), Expect:2e-136, Method:Compositional matrix adjust., Identities:233/460(51%), Positives:297/460(64%), Gaps:8/460(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + + YH VCP + AEDPERLA+YARKL A K +S++I DL+ Sbjct 63 DIGSAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISEKIGDLQ 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD ET + CL+ DVSC+ +AD+A+YQDVYAV AP+++Y QA KG RV YWIGF Sbjct 121 AVMAVPDA--ETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIGF 178 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F +AMAG++P Y NW+D VL AKN+ LC + L+E R K + P Sbjct 179 DTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKMKPCDR 238 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R LKSWHLPS FH +TCRCDTVVSC GYVVK+ITI G+ G Sbjct 239 VLFSVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITISPGLYG 298 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + A ++H DG ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 299 KTTG--YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQ 356 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E R+DMEDE+ + G+ T Sbjct 357 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAKECRKDMEDEK-LLGIRERTL 415 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 C A+ K++ HT Y+RP S VPA+F + SL Sbjct 416 TCCCLWAFKKQKTHTVYKRPDTQSIQKVPAEFDSFVVPSL 455 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 5 to 508 Score:440 bits(1132), Expect:3e-136, Method:Compositional matrix adjust., Identities:232/512(45%), Positives:317/512(61%), Gaps:8/512(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ AD P + + AFP FEV + + NDHA ARAFSHLATK IE++ D + ++ Sbjct 5 VHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETD-KDTLIL 63 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP+RR+ + YH VCP + AEDPERL YA+KL A K ++ +ITDL+ Sbjct 64 DIGSAPSRRMMSTHK--YHCVCPMRSAEDPERLVCYAKKLAAASGKVLDREIAGKITDLQ 121 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD E+ + CL+ DV+C+ A++AVYQDVYAV AP+++Y QA KG R YWIGF Sbjct 122 TVMATPDA--ESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGF 179 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F DA+AG++P Y NW+D VL A+N+ LC + L+E + R K L P Sbjct 180 DTTPFMFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDT 239 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R L+SWHLPS FH +TCRCDT+VSC GYVVKKIT+C G+ G Sbjct 240 VMFSVGSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYG 299 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + A +YH +G +V K +DT+ E+VSFPV TY+P+ ICDQMT + A V D Sbjct 300 KTVG--YAVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQ 357 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+P+ A A WA E + D++DE+ + GV + Sbjct 358 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPL-GVRERSL 416 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYlnlplkqlllntlkRA 494 C A+ R+ HT Y++P + + VP++F + SL +T L +P++ + L + Sbjct 417 TCCCLWAFKTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKK 476 Query 495 IKPGDQALADETEARAHDAAEVHELTEEEGRQ 526 K + D + AR + E L E R+ Sbjct 477 TKRELIPVLDASSARDAEQEEKERLEAELTRE 508 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 4 to 455 Score:437 bits(1123), Expect:5e-135, Method:Compositional matrix adjust., Identities:232/460(50%), Positives:296/460(64%), Gaps:8/460(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 4 VYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + + YH VCP + AEDPERLA+YARKL A K +S +I DL+ Sbjct 63 DIGSAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQ 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PDT ET + CL+ DVSC+ +AD+A+YQDVYAV AP+++Y QA KG R+ YW+GF Sbjct 121 AVMAVPDT--ETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGF 178 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F +AMAG++P Y NW+D VL AKN+ LC + L+E R K L P Sbjct 179 DTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDR 238 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E R LKSWHLPS FH +TCRCDTVVSC GYVVK+IT+ G+ G Sbjct 239 VLFSVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYG 298 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + A ++H DG ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 299 KTTG--YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQ 356 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N +IPV A+A WA E R+DMEDE+ + GV T Sbjct 357 KLLVGLNQRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEK-LLGVRERTL 415 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 C A+ K++ HT Y+RP S V A+F + SL Sbjct 416 TCCCLWAFKKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSL 455 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 3 to 455 Score:436 bits(1122), Expect:7e-135, Method:Compositional matrix adjust., Identities:228/461(49%), Positives:296/461(64%), Gaps:8/461(1%) Query 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 +V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 3 SVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL 62 Query 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 DIG APARR+ + + YH VCP + AEDPERLA+YARKL A K +S +I DL Sbjct 63 -DIGPAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDL 119 Query 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 + V+ P+ +ET++ CL+ D +CK + D+A+YQDVYAV AP+++Y QA KG RV YWIG Sbjct 120 QAVMAVPN--METSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIG 177 Query 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 F+ F +AMAG++P Y NW+D VL AKN+ LC + LSE R K L P Sbjct 178 FDTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCD 237 Query 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 + +SVGST Y E R L+SWHLPS FH +TCRCDT+VSC GYVVK++T+ GI Sbjct 238 RVLFSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIY 297 Query 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 G+ + A ++H DG ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 298 GKTSG--YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDA 355 Query 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E R+DMEDE+ + GV T Sbjct 356 QKLLVGLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEK-LLGVRERT 414 Query 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 C A+ K + HT Y+RP S VPA+F + SL Sbjct 415 LTCCCLWAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSL 455 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 3 to 455 Score:436 bits(1121), Expect:1e-134, Method:Compositional matrix adjust., Identities:228/461(49%), Positives:296/461(64%), Gaps:8/461(1%) Query 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 +V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 3 SVYVDIDADSAFLKALQQAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPDSTIL 62 Query 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 DIGSAPARR+ + + YH VCP + AEDPERLA+YARKL A K +S +I DL Sbjct 63 -DIGSAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDL 119 Query 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 + V+ P+ +ET++ CL+ D +CK + D+A+YQDVYAV AP+++Y QA KG RV YWIG Sbjct 120 QAVMAVPN--METSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVRVAYWIG 177 Query 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 F+ F +AMAG++P Y NW+D VL AKN+ LC + LSE R K L P Sbjct 178 FDTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKLKPCD 237 Query 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 + +SVGST Y E R L+SWHLPS FH +TCRCDT+VSC GYVVK++T+ GI Sbjct 238 RVLFSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIY 297 Query 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 G+ + A ++H G ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 298 GKTSG--YAVTHHAGGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDA 355 Query 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E R+DMEDE+ + GV T Sbjct 356 QKLLVGLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEK-LLGVRERT 414 Query 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 C A+ K + HT Y+RP S VPA+F + SL Sbjct 415 LTCCCLWAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSL 455 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 3 to 453 Score:436 bits(1120), Expect:1e-134, Method:Compositional matrix adjust., Identities:225/460(49%), Positives:295/460(64%), Gaps:9/460(1%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 VTVD+ AD P L + AFP FEV + + NDHA ARAFSHLATK IE+++ + + Sbjct 3 VTVDVEADSPFLKALQKAFPAFEVESQQVTPNDHANARAFSHLATKLIEQEVPA-NITIL 61 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 D+GSAPARR+ + + +YH +CP K AEDPERLA+YARKL + + VS +ITDL+ Sbjct 62 DVGSAPARRLMS--DHSYHCICPMKSAEDPERLANYARKLAKTAGEVLDKNVSGKITDLQ 119 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 DV+ PD LE+ + CL+ D +C+ +A++AVYQDV AP+++Y QA KG R VYWIGF Sbjct 120 DVMATPD--LESPTFCLHTDETCRTRAEVAVYQDV-XXHAPTSLYHQAMKGVRTVYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F + +AG++P Y NW+D VL A+N+ LC + LSE R K L PS Sbjct 177 DTTPFMFEVVAGAYPTYSTNWADEQVLQARNIGLCATSLSEGHRGKISIMRKKRLRPSDR 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 +SVG T Y+E R LKSWHLPS FH N +TCRCDT+VSC GYVVKKIT+ G G Sbjct 237 XMFSVGXTLYIESRRLLKSWHLPSVFHLKGKNSFTCRCDTIVSCEGYVVKKITMSPGTYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + A ++H +G ++ K +DT+ E+VSFPV TY+PA ICDQMT + A V D Sbjct 297 KTVG--YAVTHHAEGFLMCKVTDTVRGERVSFPVCTYVPATICDQMTGILATDVTPEDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA EA+ DMEDE+ + G T Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFSKWAREAKADMEDEKPL-GTRERTL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 C A+ + HT Y+RP + + VP+ F + SL Sbjct 414 TCCCLWAFKNHKTHTMYKRPDTQTIVKVPSTFDSFVIPSL 453 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 3 to 455 Score:432 bits(1112), Expect:2e-133, Method:Compositional matrix adjust., Identities:226/461(49%), Positives:294/461(63%), Gaps:8/461(1%) Query 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 +V VD+ AD L + A+P FEV + NDHA ARAFSHLA K IE++ID I+ Sbjct 3 SVYVDIDADSAFLKALQRAYPMFEVEPKQVTPNDHANARAFSHLAIKLIEQEIDPGSTIL 62 Query 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 IGSAPARR+ + + YH VCP + AEDPERLA+YARKL A K +S +I DL Sbjct 63 G-IGSAPARRMMS--DRKYHCVCPMRSAEDPERLANYARKLASAAGKVTDKNISGKINDL 119 Query 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 + V+ P+ +ET++ CL+ D +CK + D+A+YQDVYAV AP+++Y QA KG V YWIG Sbjct 120 QAVMAVPN--METSTFCLHTDATCKQRGDVAIYQDVYAVHAPTSLYHQAIKGVHVAYWIG 177 Query 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 F+ F +AMAG++P Y NW+D VL AKN+ LC + LSE R K P Sbjct 178 FDTTPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLSEGRRGKLSIMRGKKFKPCD 237 Query 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 + +SVGST Y E R L+SWHLPS FH +TCRCDT+VSC GYVVK++T+ GI Sbjct 238 RVLFSVGSTLYPESRKLLQSWHLPSVFHLKGKLSFTCRCDTIVSCEGYVVKRVTMSPGIY 297 Query 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 G+ + A ++H DG ++ K +DT++ E+VSF V TY+PA ICDQMT + A V D Sbjct 298 GKTSG--YAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDA 355 Query 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E R+DMEDE+ + GV T Sbjct 356 QKLLVGLNQRIVVNGRTQRNTNTMKNYLLPIVAQAFSKWAKECRKDMEDEK-LLGVRERT 414 Query 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASL 474 C A+ K + HT Y+RP S VPA+F + SL Sbjct 415 LTCCCLWAFRKHKTHTVYKRPDTQSIQKVPAEFDSFVIPSL 455 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 4 to 536 Score:429 bits(1102), Expect:3e-132, Method:Compositional matrix adjust., Identities:237/544(44%), Positives:327/544(60%), Gaps:13/544(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE ++D I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP +CAEDP+RL YA KL + ++ + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ +PD LET ++CL+DD SC+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 AVMSDPD--LETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT+N E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYlnlplkqlllntlk 492 + C A+ + + + Y+RP + I V + F + + + L + L+ + L+ Sbjct 414 QLVMGCCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLE 473 Query 493 RAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDDGMSN 552 +P A++ + A E E+ E E +AA P ADV E +VD + Sbjct 474 EHKEPSPLITAEDVQEAKCAADEAKEVREAE-ELRAALPPLAADVEEPTLEADVDLMLQE 532 Query 553 VDLG 556 G Sbjct 533 AGAG 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 4 to 536 Score:427 bits(1097), Expect:1e-131, Method:Compositional matrix adjust., Identities:236/544(43%), Positives:326/544(59%), Gaps:13/544(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE ++D I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP +CAEDP+RL YA KL + ++ + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ +PD LET ++CL+DD SC+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 AVMSDPD--LETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT+N E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYlnlplkqlllntlk 492 + C A+ + + + Y+RP + I V + F + + + L + L+ + L+ Sbjct 414 QLVMGCCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLE 473 Query 493 RAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDDGMSN 552 +P A++ + A E E+ E E +A P ADV E +VD + Sbjct 474 EHKEPSPLITAEDIQEAKCAADEAKEVREAE-ELRAVLPPLAADVEEPTLEADVDLMLQE 532 Query 553 VDLG 556 G Sbjct 533 AGAG 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 4 to 447 Score:427 bits(1097), Expect:2e-131, Method:Compositional matrix adjust., Identities:218/454(48%), Positives:293/454(64%), Gaps:12/454(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE +++ I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP KCAEDP+RL YA KL + ++ + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMKCAEDPDRLFKYAAKLKKNCKEITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 +V+ +PD LET +ICL+DD +C+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 EVMNDPD--LETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT+N E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKF 466 + C A+ K + + Y+RP + I V + F Sbjct 414 QLVMGCCWAFRKHKITSVYKRPDTQTIIKVNSDF 447 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 4 to 536 Score:426 bits(1095), Expect:3e-131, Method:Compositional matrix adjust., Identities:236/544(43%), Positives:326/544(59%), Gaps:13/544(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE ++D I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVDPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP +CAEDP+RL YA KL + ++ + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMRCAEDPDRLYKYATKLKKNCKEITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ +PD LET ++CL+DD SC+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 AVMSDPD--LETETMCLHDDESCRYEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKYLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT+N E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLNGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYlnlplkqlllntlk 492 + C A+ + + + Y+RP + I V + F + + + L + L+ + L+ Sbjct 414 QLVMGCCWAFRRHKITSIYKRPDTQTIIKVNSDFHSFVLPRIGSNTLEIGLRTRIRKMLE 473 Query 493 RAIKPGDQALADETEARAHDAAEVHELTEEEGRQQAANPSYIADVLGQDDEEEVDDGMSN 552 +P A++ + A E E+ E E +AA P AD E +VD + Sbjct 474 EHKEPSPLITAEDIQEAKCAADEAKEVREAE-ELRAALPPLAADFEEPTLEADVDLMLQE 532 Query 553 VDLG 556 G Sbjct 533 AGAG 536 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 4 to 447 Score:424 bits(1089), Expect:2e-130, Method:Compositional matrix adjust., Identities:217/454(48%), Positives:292/454(64%), Gaps:12/454(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ D P L + +FP FEV A + NDHA ARAFSHLA+K IE +++ I+ Sbjct 4 VHVDIEEDSPFLRALQRSFPQFEVEAKQVTDNDHANARAFSHLASKLIETEVEPSDTIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH +CP KCAEDP+RL YA KL + + + ++ +L Sbjct 63 DIGSAPARRMYSKHK--YHCICPMKCAEDPDRLFKYAAKLKKNCKDITDKELDKKMKELA 120 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 +V+ +PD LET +ICL+DD +C+ + +AVYQDVYAVD P+++Y QA+KG RV YWIGF Sbjct 121 EVMSDPD--LETETICLHDDETCRFEGQVAVYQDVYAVDGPTSLYHQANKGVRVAYWIGF 178 Query 195 E--PFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPS 252 + PF+F +AG++P Y NW+D VL A+N+ LC S + E S + R K L PS Sbjct 179 DTTPFMFKN--LAGAYPSYSTNWADETVLTARNIGLCSSDVMERSRRGMSILRKKFLKPS 236 Query 253 GEIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGI 312 + +SVGST Y E RD L+SWHLPS FH YTCRC+T+VSC GYVVK+I I G+ Sbjct 237 NNVLFSVGSTIYHEKRDLLRSWHLPSVFHLRGKQNYTCRCETIVSCDGYVVKRIAISPGL 296 Query 313 VGRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPD 372 G+P+ A + HR+G + K +DT++ E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 YGKPSG--YAATMHREGFLCCKVTDTLDGERVSFPVCTYVPATLCDQMTGILATDVSADD 354 Query 373 VVKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSV 432 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E + D EDE+ + G+ Sbjct 355 AQKLLVGLNQRIVVNGRTQRNTNTMKNYLLPVVAQAFARWAKEYKEDQEDERPL-GLRDR 413 Query 433 TTWICICRAYDKRQQHTFYRRPKQSSGIYVPAKF 466 + C A+ K + + Y+RP + I V + F Sbjct 414 QLVMGCCWAFRKHKITSVYKRPDTQTIIKVNSDF 447 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 6 to 518 Score:418 bits(1074), Expect:2e-128, Method:Compositional matrix adjust., Identities:232/526(44%), Positives:315/526(59%), Gaps:17/526(3%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQVTPNDHANARAFSHLASKLIELEVPTTATIL- 64 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH VCP + EDP+R+ YA KL K + ++I DL+ Sbjct 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 VL+ PD ET S+C ++DV+C ++A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 123 TVLDTPDA--ETPSLCFHNDVTCNMRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLNGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 A +++ +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + D Sbjct 300 ETVG--YAVTHNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIV+NG T RN N+M N L+P+ A+ WA E + D+++E+ + T Sbjct 358 KLLVGLNQRIVINGRTNRNTNTMQNYLLPIIAQGFSKWAKERKDDLDNEKMLGTRERKLT 417 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYlnlplkqlllntlkRA 494 + C+ A+ ++ H+FYR P + + VPA F+ +S+ T L L LK A Sbjct 418 YGCLW-AFRTKKVHSFYRPPGTQTCVKVPASFSAFPMSSVWTT----SLPMSLRQKLKLA 472 Query 495 IKP-GDQALADETEARAHDAAEVHELTEEEGRQQA---ANPSYIAD 536 ++P ++ L +E +A E +EE R + A P +AD Sbjct 473 LQPKKEEKLLQVSEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 6 to 518 Score:416 bits(1069), Expect:7e-128, Method:Compositional matrix adjust., Identities:231/526(44%), Positives:311/526(59%), Gaps:17/526(3%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VD+ P + Q + +FP FEVVA + NDHA ARAFSHLA+K IE ++ I+ Sbjct 6 VNVDVDPQSPFVVQLQKSFPQFEVVAQQATPNDHANARAFSHLASKLIELEVPTTATIL- 64 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAPARR+ + YH VCP + EDP+R+ YA KL K + ++I DL+ Sbjct 65 DIGSAPARRMFSEHQ--YHCVCPMRSPEDPDRMMKYASKLAEKACKITNKNLHEKIKDLR 122 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 VL+ PD ET S+C ++DV+C +A+ +V QDVY ++AP TIY QA KG R +YWIGF Sbjct 123 TVLDTPDA--ETPSLCFHNDVTCNTRAEYSVMQDVY-INAPGTIYHQAMKGVRTLYWIGF 179 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F AMAGS+P Y+ NW+D VL A+N+ LC + LSE R K L P Sbjct 180 DTTQFMFSAMAGSYPAYNTNWADEKVLEARNIGLCSTKLSEGRTGKLSIMRKKELKPGSR 239 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 +++SVGST Y E R L+SWHLPS FH YTCRCDTVVSC GYVVKKITI GI G Sbjct 240 VYFSVGSTLYPEHRASLQSWHLPSVFHLKGKQSYTCRCDTVVSCEGYVVKKITISPGITG 299 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 A + + +G ++ K +DT+ E+VSFPV TYIPA ICDQMT + A + D Sbjct 300 ETVG--YAVTNNSEGFLLCKVTDTVKGERVSFPVCTYIPATICDQMTGIMATDISPDDAQ 357 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIV+NG T RN N+M N L+P A+ WA E + D+++E+ + T Sbjct 358 KLLVGLNQRIVINGKTNRNTNTMQNYLLPTIAQGFSKWAKERKEDLDNEKMLGTRERKLT 417 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSATYlnlplkqlllntlkRA 494 + C+ A+ ++ H+FYR P + + VPA F+ +S+ T L L +K A Sbjct 418 YGCLW-AFRTKKVHSFYRPPGTQTSVKVPASFSAFPMSSVWTT----SLPMSLRQKMKLA 472 Query 495 IKP-GDQALADETEARAHDAAEVHELTEEEGRQQA---ANPSYIAD 536 ++P ++ L E +A E +EE R + A P +AD Sbjct 473 LQPKKEEKLLQVPEELVMEAKAAFEDAQEEARAEKLREALPPLVAD 518 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 4 to 445 Score:411 bits(1057), Expect:3e-126, Method:Compositional matrix adjust., Identities:217/452(48%), Positives:287/452(63%), Gaps:10/452(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VDL AD P + + FP FE+ A+ + NDHA ARAFSHLATK IE ++D QVI+ Sbjct 4 VHVDLDADSPYVKLLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP R + YH +CP AEDP+RL YA KL R + D ++ + DL Sbjct 63 DIGSAPVRHTHSKHK--YHCICPMISAEDPDRLQRYADKL-RKSDVTD-RFIASKAADLL 118 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD +ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 119 TVMSTPD--VETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F MAG++P Y+ NW+D +VL A+N+ LC S L E + R K L P+ + Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEKRLGKISIMRKKKLQPTNK 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E+R L+SWHLP+ FH +T RC+T+VSC GYVVKKITI GI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCDGYVVKKITISPGIYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + N LA++ HR+G + K +DT+ E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 KVDN--LASTLHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E R D+EDE+D+ GV + Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREYRADLEDEKDL-GVRERSL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKF 466 + C A+ + + Y++P + VPA F Sbjct 414 VMGCCWAFKTHKITSIYKKPGTQTIKKVPAVF 445 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 4 to 455 Score:409 bits(1051), Expect:2e-125, Method:Compositional matrix adjust., Identities:216/462(47%), Positives:289/462(62%), Gaps:10/462(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VDL AD P + + FP FE+ A+ + NDHA ARAFSHLATK IE ++D QVI+ Sbjct 4 VHVDLDADSPYVKSLQKCFPHFEIEATQVTDNDHANARAFSHLATKLIESEVDPDQVIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP R + YH +CP AEDP+RL YA KL R + D ++ + DL Sbjct 63 DIGSAPVRHTHSKHK--YHCICPMISAEDPDRLHRYADKL-RKSDVTD-RFIASKAADLL 118 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD +ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 119 TVMSTPD--VETPSLCMHTDSTCRYHGTVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F MAG++P Y+ NW+D +VL A+N+ LC S L E R K L P+ + Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLCSSDLHEQRFGKISIMRKKKLQPTNK 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E+R L+SWHLP+ FH +T RC+T+VSC GYVVKKITI GI G Sbjct 237 VVFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITISPGIYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + N LA++ HR+G + K +DT+ E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 KVDN--LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+P+ A+A WA E D+EDE+D+ GV + Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMPNYLLPIVAQAFSRWAREYHADLEDEKDL-GVRERSL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSA 476 + C A+ + + Y++P + VPA F + L++ Sbjct 414 VMGCCWAFKTHKITSIYKKPGTQTTKKVPAVFNSFVVPQLTS 455 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 4 to 445 Score:407 bits(1047), Expect:7e-125, Method:Compositional matrix adjust., Identities:217/452(48%), Positives:285/452(63%), Gaps:10/452(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 V VDL AD P + + FP FE+ A+ + NDHA ARAFSHLATK IE ++D QVI+ Sbjct 4 VHVDLDADSPFVKSLQRCFPHFEIEATQVTDNDHANARAFSHLATKLIEGEVDTDQVIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP R + YH +CP K AEDP+RL YA KL R + D ++ + DL Sbjct 63 DIGSAPVRHTHSKHK--YHCICPMKSAEDPDRLYRYADKL-RKSDVTD-KCIASKAADLL 118 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 V+ PD ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 119 TVMSTPDA--ETPSLCMHTDSTCRYHGSVAVYQDVYAVHAPTSIYYQALKGVRTIYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F MAG++P Y+ NW+D +VL A+N+ L S L E S R K L P+ + Sbjct 177 DTTPFMYKNMAGAYPTYNTNWADESVLEARNIGLGSSDLHEKSFGKVSIMRKKKLQPTNK 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 + +SVGST Y E+R L+SWHLP+ FH +T RC+T+VSC GYVVKKIT+ GI G Sbjct 237 VIFSVGSTIYTEERILLRSWHLPNVFHLKGKTSFTGRCNTIVSCEGYVVKKITLSPGIYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + N LA++ HR+G + K +DT+ E+VSFPV TY+PA +CDQMT + A V D Sbjct 297 KVDN--LASTMHREGFLSCKVTDTLRGERVSFPVCTYVPATLCDQMTGILATDVSVDDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E R D+EDE+ + GV + Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLEDEKGL-GVRERSL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKF 466 + C A+ + + Y+RP + VPA F Sbjct 414 VMGCCWAFKTHKITSIYKRPGTQTIKKVPAVF 445 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 5 to 459 Score:407 bits(1046), Expect:1e-124, Method:Compositional matrix adjust., Identities:215/464(46%), Positives:291/464(62%), Gaps:9/464(1%) Query 14 TVTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIV 73 TV VD+ P + Q + +FP FE+VA + NDHA ARAFSHLA+K IE +I V + Sbjct 5 TVHVDVDPQSPFVLQLQKSFPQFEIVAQQVTPNDHANARAFSHLASKLIEHEIPT-SVTI 63 Query 74 ADIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDL 133 DIGSAPARR+ + YH VCP + EDP+RL +YA +L + + D++ DL Sbjct 64 LDIGSAPARRMYSEHK--YHCVCPMRSPEDPDRLMNYASRLADKAGEITNKRLHDKLADL 121 Query 134 KDVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIG 193 K VLE+PD ET +IC ++DV C+ A+++V Q+VY ++APSTIY QA KG R +YWIG Sbjct 122 KSVLESPDA--ETGTICFHNDVICRTTAEVSVMQNVY-INAPSTIYHQALKGVRKLYWIG 178 Query 194 FEPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSG 253 F+ F +MAGS+P Y+ NW+D VL A+N+ LC + L E ++ FR K L P Sbjct 179 FDTTQFMFSSMAGSYPSYNTNWADERVLEARNIGLCSTKLREGTMGKLSTFRKKALKPGT 238 Query 254 EIHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIV 313 +++SVGST Y E+R L+SWHLPS FH +TCRCDT V+C GYVVKKITI GI Sbjct 239 NVYFSVGSTLYPENRADLQSWHLPSVFHLKGKQSFTCRCDTAVNCEGYVVKKITISPGIT 298 Query 314 GRPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDV 373 GR N T+ + +G ++ K +DT+ E+VSFPV TYIP ICDQMT + A ++ D Sbjct 299 GR-VNRYTVTN-NSEGFLLCKITDTVKGERVSFPVCTYIPPSICDQMTGILATDIQPEDA 356 Query 374 VKLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVT 433 KLLVGLNQRIVVNG T RN N+M N L+P A L WA E + D DE+ + Sbjct 357 QKLLVGLNQRIVVNGKTNRNTNTMQNYLLPAVATGLSKWAKERKADCSDEKPLNVRERKL 416 Query 434 TWICICRAYDKRQQHTFYRRPKQSSGIYVPAKFTGSLRASLSAT 477 + C+ A+ ++ H+FYR P + + V A+F+ +S+ T Sbjct 417 AFGCLW-AFKTKKIHSFYRPPGTQTIVKVAAEFSAFPMSSVWTT 459 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 4 to 445 Score:405 bits(1040), Expect:7e-124, Method:Compositional matrix adjust., Identities:214/452(47%), Positives:287/452(63%), Gaps:10/452(2%) Query 15 VTVDLPADHPALNQFKTAFPGFEVVASNRSSNDHAAARAFSHLATKWIERDIDGRQVIVA 74 + VDL AD P + + FP FE+ A + NDHA ARAFSH+ATK IE ++D QVI+ Sbjct 4 IHVDLDADSPYVKSLQRTFPQFEIEARQVTDNDHANARAFSHVATKLIESEVDRDQVIL- 62 Query 75 DIGSAPARRVGAPDNVTYHSVCPRKCAEDPERLASYARKLVRAVEKGDGHLVSDRITDLK 134 DIGSAP R A N YH +CP AEDP+RL YA +L ++ + D ++ S + DL Sbjct 63 DIGSAPVRH--AHSNHRYHCICPMISAEDPDRLQRYAERLKKS-DITDKNIAS-KAADLL 118 Query 135 DVLENPDTSLETTSICLNDDVSCKVKADIAVYQDVYAVDAPSTIYAQADKGTRVVYWIGF 194 +V+ PD ET S+C++ D +C+ +AVYQDVYAV AP++IY QA KG R +YWIGF Sbjct 119 EVMSTPDA--ETPSLCMHTDATCRYFGSVAVYQDVYAVHAPTSIYHQALKGVRTIYWIGF 176 Query 195 EPFVFHTDAMAGSFPLYDANWSDSAVLAAKNLPLCYSGLSEDSIKWRFRFRDKPLVPSGE 254 + F MAGS+P Y+ NW+D VL A+N+ L S L E + R K L P+ + Sbjct 177 DTTPFMYKNMAGSYPTYNTNWADERVLEARNIGLGNSDLQESRLGKLSILRKKRLQPTNK 236 Query 255 IHYSVGSTHYVEDRDKLKSWHLPSTFHFVAPNKYTCRCDTVVSCGGYVVKKITICEGIVG 314 I +SVGST Y EDR L+SWHLP+ FH + +T RC T+VSC GYV+KKITI G+ G Sbjct 237 IIFSVGSTIYTEDRSLLRSWHLPNVFHLKGKSNFTGRCGTIVSCEGYVIKKITISPGLYG 296 Query 315 RPANEELATSYHRDGVVVTKFSDTINHEQVSFPVVTYIPAVICDQMTAMTADPVKYPDVV 374 + N LA++ HR+G + K +DT+ E+VSF V TY+PA +CDQMT + A V D Sbjct 297 KVEN--LASTMHREGFLSCKVTDTLRGERVSFAVCTYVPATLCDQMTGILATDVSVDDAQ 354 Query 375 KLLVGLNQRIVVNGTTVRNVNSMDNSLIPVFARALCSWADEARRDMEDEQDMYGVTSVTT 434 KLLVGLNQRIVVNG T RN N+M N L+PV A+A WA E R D++DE+++ GV T Sbjct 355 KLLVGLNQRIVVNGRTQRNTNTMQNYLLPVVAQAFSRWAREHRADLDDEKEL-GVRERTL 413 Query 435 WICICRAYDKRQQHTFYRRPKQSSGIYVPAKF 466 + C A+ ++ + Y++P + VPA F Sbjct 414 TMGCCWAFKTQKITSIYKKPGTQTIKKVPAVF 445