########################################
# Program: needle
# Rundate: Thu Mar 29 2007 19:38:13
# Commandline: needle
#    [-asequence] 5NTD_HUMAN_2.fasta
#    [-bsequence] USHA_ECOLI_2.fasta
#    [-outfile] 5ntd_h2-usha_e2.needle
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: 5ntd_h2-usha_e2.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 5NTD_HUMAN
# 2: USHA_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 178
# Identity:      48/178 (27.0%)
# Similarity:    79/178 (44.4%)
# Gaps:          31/178 (17.4%)
# Score: 145.5
# 
#
#=======================================

5NTD_HUMAN         1 ELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHTDEMFWNHVSMC     50
                     ::|:|...|:|.....||.:.|||.||..|.::.          ......
USHA_ECOLI         1 KIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDR----------TGADFA     40

5NTD_HUMAN        51 ILNGGGIRSPIDERNNGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEH    100
                     :::|||||..|:.   |.|:::|:..|.|||.......:.|   |:..::
USHA_ECOLI        41 VMSGGGIRDSIEA---GDISYKNVLKVQPFGNVVVYADMTG---KEVIDY     84

5NTD_HUMAN       101 --SVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYD    148
                       :|.:....:|.:.|...:..|    .|.|    ||:.|  |.:....|
USHA_ECOLI        85 LTAVAQMKPDSGAYPQFANVSFV----AKDG----KLNDL--KIKGEPVD    124

5NTD_HUMAN       149 PLKMDEVYKVILPNFLANGGDGFQMIKD    176
                     |.|   .|::...||.|.||||:..:.:
USHA_ECOLI       125 PAK---TYRMATLNFNATGGDGYPRLDN    149


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