########################################
# Program: needle
# Rundate: Thu Mar 29 2007 19:38:13
# Commandline: needle
#    [-asequence] 5NTD_HUMAN_1.fasta
#    [-bsequence] USHA_ECOLI_1.fasta
#    [-outfile] 5ntd_h1-usha_e1.needle
#    -gapopen 10
#    -gapextend 0.5
# Align_format: srspair
# Report_file: 5ntd_h1-usha_e1.needle
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 5NTD_HUMAN
# 2: USHA_ECOLI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity:      72/240 (30.0%)
# Similarity:   108/240 (45.0%)
# Gaps:          38/240 (15.8%)
# Score: 205.5
# 
#
#=======================================

5NTD_HUMAN         1 LTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRR---AE     47
                     :|:|||||.|....:......          |:|...|.|..||:   ||
USHA_ECOLI         1 ITVLHTNDHHGHFWRNEYGEY----------GLAAQKTLVDGIRKEVAAE     40

5NTD_HUMAN        48 -PNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGV     96
                      .:||||..||...|.....:.........||.:.|||||:|||||||.:
USHA_ECOLI        41 GGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPL     90

5NTD_HUMAN        97 EGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIV    146
                     . ::....|.||||:|||||..|    |....|:.|:.:....|..:.::
USHA_ECOLI        91 T-VLRQQEKWAKFPLLSANIYQK----STGERLFKPWALFKRQDLKIAVI    135

5NTD_HUMAN       147 GYTSKETPFLSNPG--TNLVFE---DEITALQPEVDKLKTLNVNKIIALG    191
                     |.|:.:|..:.||.  |::.|.   ||...:..|:.:.:..::  |||..
USHA_ECOLI       136 GLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDI--IIAAT    183

5NTD_HUMAN       192 HSGF------------EMDKLIAQKVRGVDVVVGGHSNTF    219
                     |.|.            :::...|.....:.::|||||...
USHA_ECOLI       184 HMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDP    223


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