*********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** ***********************************************************************EMBOSS - Needle********************************************************************************* ------------------------------------------------------------------------------------0606-------------------------------------------------------------------------------- ######################################## # Program: needle # Rundate: Mon 1 Apr 2013 21:20:06 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20130401-212005-0816-70092455-oy.asequence # -bsequence emboss_needle-I20130401-212005-0816-70092455-oy.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: EMBOSS_001 # 2: EMBOSS_001 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 21 # Identity: 13/21 (61.9%) # Similarity: 16/21 (76.2%) # Gaps: 3/21 (14.3%) # Score: 52.5 # # #======================================= EMBOSS_001 1 ADFDSSTCFH--LAEYRIPYQ 19 ::|||.: || |||||||.| EMBOSS_001 1 SEFDSPS-FHKILAEYRIPQQ 20 #--------------------------------------- #--------------------------------------- ------------------------------------------------------------------------------------0408------------------------------------------------------------------------------- ######################################## # Program: needle # Rundate: Mon 1 Apr 2013 21:39:00 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20130401-213859-0906-77110832-pg.asequence # -bsequence emboss_needle-I20130401-213859-0906-77110832-pg.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: EMBOSS_001 # 2: EMBOSS_001 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 21 # Identity: 14/21 (66.7%) # Similarity: 15/21 (71.4%) # Gaps: 2/21 ( 9.5%) # Score: 53.0 # # #======================================= EMBOSS_001 1 MP-AYNSNYTPTTRGMGQIVE 20 || |||:| ||.|.|||..|| EMBOSS_001 1 MPDAYNAN-TPGTNGMGYNVE 20 -------------------------------------------------------------------------------0608------------------------------------------------------------------------------------ ######################################## # Program: needle # Rundate: Mon 1 Apr 2013 21:45:13 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20130401-214503-0899-13768811-pg.asequence # -bsequence emboss_needle-I20130401-214503-0899-13768811-pg.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: EMBOSS_001 # 2: EMBOSS_001 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 20 # Identity: 11/20 (55.0%) # Similarity: 13/20 (65.0%) # Gaps: 1/20 ( 5.0%) # Score: 45.0 # # #======================================= EMBOSS_001 1 SAN-CRLFSLTEAVDFAEKW 19 |.| .|||..||:..||:|| EMBOSS_001 1 SPNEMRLFMDTESEQFADKW 20 *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** *********************************************************************************************************************************************************************** **********************************************************************EMBOSS - Water*********************************************************************************** -------------------------------------------------------------------------------0408------------------------------------------------------------------------------------ ######################################## # Program: water # Rundate: Mon 1 Apr 2013 21:50:33 # Commandline: water # -auto # -stdout # -asequence emboss_water-I20130401-215032-0439-94473046-oy.asequence # -bsequence emboss_water-I20130401-215032-0439-94473046-oy.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: EMBOSS_001 # 2: EMBOSS_001 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 21 # Identity: 14/21 (66.7%) # Similarity: 15/21 (71.4%) # Gaps: 2/21 ( 9.5%) # Score: 53.0 # # #======================================= EMBOSS_001 1 MP-AYNSNYTPTTRGMGQIVE 20 || |||:| ||.|.|||..|| EMBOSS_001 1 MPDAYNAN-TPGTNGMGYNVE 20 #--------------------------------------- #--------------------------------------- -------------------------------------------------------------------------------0606------------------------------------------------------------------------------------ ######################################## # Program: water # Rundate: Mon 1 Apr 2013 21:51:38 # Commandline: water # -auto # -stdout # -asequence emboss_water-I20130401-215137-0607-80371332-pg.asequence # -bsequence emboss_water-I20130401-215137-0607-80371332-pg.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: EMBOSS_001 # 2: EMBOSS_001 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 21 # Identity: 13/21 (61.9%) # Similarity: 16/21 (76.2%) # Gaps: 3/21 (14.3%) # Score: 52.5 # # #======================================= EMBOSS_001 1 ADFDSSTCFH--LAEYRIPYQ 19 ::|||.: || |||||||.| EMBOSS_001 1 SEFDSPS-FHKILAEYRIPQQ 20 #--------------------------------------- #--------------------------------------- -------------------------------------------------------------------------------0608------------------------------------------------------------------------------------ ######################################## # Program: water # Rundate: Fri 5 Apr 2013 17:19:06 # Commandline: water # -auto # -stdout # -asequence emboss_water-I20130405-171902-0971-63968592-pg.asequence # -bsequence emboss_water-I20130405-171902-0971-63968592-pg.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: EMBOSS_001 # 2: EMBOSS_001 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 15 # Identity: 9/15 (60.0%) # Similarity: 11/15 (73.3%) # Gaps: 0/15 ( 0.0%) # Score: 47.0 # # #======================================= EMBOSS_001 6 RLFSLTEAVDFAEKW 20 |||..||:..||:|| EMBOSS_001 6 RLFMDTESEQFADKW 20 #--------------------------------------- #---------------------------------------