TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: lm_genome.fasta 12 sequences; 2,945,078 total letters Query= sp|O32003|YOKD_BACSU SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD OS=Bacillus subtilis (strain 168) GN=yokD PE=1 SV=1 Length=272 Score E Sequences producing significant alignments: (Bits) Value embl|AL591981|AL591981 Listeria monocytogenes strain EGD, compl... 238 7e-71 > embl|AL591981|AL591981 Listeria monocytogenes strain EGD, complete genome, segment 9/12 Length=347050 Score = 238 bits (606), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 114/261 (44%), Positives = 168/261 (64%), Gaps = 1/261 (0%) Frame = -2 Query 2 KKIVESTTFPRTKQSITEDLKALGLKKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVVTE 61 K + T P TKQ I DL+ LG+KKG T++ H+S+S W+ GG V VI AL ++V E Sbjct 17517 KMAIWRTKKPATKQKIVSDLQELGIKKGDTIIFHASMSKAHWICGGPVTVILALQELVGE 17338 Query 62 EGTIVMPSQSVELSDPKEWGNPPVPEEWWDIIRESMPAYNSNYTPTTRGMGQIVELFRSY 121 G IVMP+Q+ +LSDP +W NPPVPE WW IIR P ++ TPT RGMG I E FR+ Sbjct 17337 LGNIVMPAQTGQLSDPAKWENPPVPESWWKIIRRETPPFDPLVTPT-RGMGVIAETFRTM 17161 Query 122 PEVKRSNHPNYSFVAWGKHKNKILNQHPLEFGLGEQSPLGKLYIRESYVLLLGADFDSST 181 P+V+RS HP +SF AWGK K +IL PL +G++SPLGK+Y ++ ++L G D +++T Sbjct 17160 PDVERSFHPYHSFCAWGKDKKQILANQPLAKSMGDESPLGKMYQLDAKIILFGVDNNNNT 16981 Query 182 CFHLAEYRIPYQKIINRGAPIIVEGKRVWKEYKELEFREELFQEVGQAFEAEHNMKVGKV 241 HLAE R +I A + G+ +W++Y+E+++ E+F +G+A+E EH+ + Sbjct 16980 SLHLAEERSNAFPLIENQAAFLKNGEIIWEKYQEIDYNSEVFIALGRAYEKEHDFHPTTI 16801 Query 242 GSANCRLFSLTEAVDFAEKWF 262 A +++ + + VDF K+F Sbjct 16800 IGAPTKIYDMRDLVDFGTKYF 16738 Lambda K H a alpha 0.316 0.134 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 186334520 Database: lm_genome.fasta Posted date: Nov 26, 2013 1:09 PM Number of letters in database: 2,945,078 Number of sequences in database: 12 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40