Display basic information about sequences Version: EMBOSS:6.4.0.0 Standard (Mandatory) qualifiers: [-sequence] seqall [sw:mrga_bacsu] (Gapped) sequence(s) filename and optional format, or reference (input USA) Additional (Optional) qualifiers: -outfile outfile [stdout] If you enter the name of a file here then this program will write the sequence details into that file. -html boolean [N] Format output as an HTML table Advanced (Unprompted) qualifiers: -[no]columns boolean [Y] Set this option on (Y) to print the sequence information into neat, aligned columns in the output file. Alternatively, leave it unset (N), in which case the information records will be delimited by a character, which you may specify by using the -delimiter option. In other words, if -columns is set on, the -delimiter option is overriden. -delimiter string [|] This string, which is usually a single character only, is used to delimit individual records in the text output file. It could be a space character, a tab character, a pipe character or any other character or string. (Any string) -only boolean [Y] This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: '-nohead -noname -noacc -notype -nopgc -nodesc' to get only the length output, you can specify '-only -length' -[no]heading boolean [Y] Display column headings -usa boolean [@(!$(only))] Display the USA of the sequence -database boolean [@(!$(only))] Display 'database' column -name boolean [@(!$(only))] Display 'name' column -accession boolean [@(!$(only))] Display 'accession' column -gi boolean [N] Display 'GI' column -seqversion boolean [N] Display 'version' column -type boolean [@(!$(only))] Display 'type' column -length boolean [@(!$(only))] Display 'length' column -pgc boolean [@(!$(only))] Display 'percent GC content' column -organism boolean [@(!$(only))] Display 'organism' column -description boolean [@(!$(only))] Display 'description' column General qualifiers: -help boolean Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose