RID: 0W46K22X013 Job Title:Protein Sequence Program: BLASTP Query: unnamed protein product ID: lcl|Query_2584595(amino acid) Length: 180 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein [Acute bee paralysis virus... Acute bee pa... NA 1217067 381 381 100% 4e-122 100.00 1906 Q9DSN9.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Cricket para... NA 928300 129 129 86% 6e-34 41.29 1771 Q9IJX4.1 RecName: Full=Replicase polyprotein; Contains: RecName:... Drosophila C... NA 865617 129 129 93% 7e-34 40.24 1759 O36966.1 RecName: Full=RNA1 polyprotein; Contains: RecName:... Tomato torra... NA 686948 81.3 81.3 84% 5e-17 34.64 2158 A1XIP9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475778 79.7 79.7 85% 2e-16 31.82 2134 Q9YLS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475780 79.3 79.3 85% 2e-16 31.82 2134 Q6WQ42.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Avian enceph... NA 475779 79.3 79.3 85% 2e-16 31.82 2134 Q6R325.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470593 71.2 71.2 85% 1e-13 32.68 2228 Q9DWR1.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470423 68.6 68.6 84% 1e-12 32.24 2227 A3FMB2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12098 68.6 68.6 84% 1e-12 32.24 2227 P08617.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12099 68.6 68.6 84% 1e-12 32.24 2227 P06441.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 474341 68.2 68.2 84% 1e-12 32.24 2228 A5LGW7.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 649895 68.2 68.2 95% 2e-12 30.23 1842 Q76L40.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470591 67.8 67.8 84% 2e-12 32.24 2225 Q5Y944.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12100 67.8 67.8 86% 2e-12 32.47 2227 P13901.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470592 67.8 67.8 84% 2e-12 32.24 2227 Q8V0N6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Simian hepat... NA 12102 67.4 67.4 82% 3e-12 32.65 2230 P14553.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470422 67.4 67.4 84% 3e-12 32.24 2227 Q67825.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Bean-pod mot... NA 31715 65.5 65.5 84% 1e-11 33.55 1850 Q9YJU5.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cowpea sever... NA 31716 64.7 64.7 77% 3e-11 34.29 1858 P36312.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Seneca Valle... NA 686944 62.0 62.0 81% 2e-10 31.54 2181 Q155Z9.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 76875 60.8 60.8 87% 5e-10 29.11 1870 Q9WNW0.1 RecName: Full=Genome polyprotein; Contains: RecName:... Parsnip yell... NA 33762 60.8 60.8 84% 5e-10 32.24 3027 Q05057.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Mengo virus NA 12107 60.1 60.1 78% 9e-10 28.57 2293 P12296.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... cardiovirus A1 NA 2870365 59.3 59.3 78% 2e-09 28.57 2292 Q66765.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12104 59.3 59.3 78% 2e-09 28.57 2290 P03304.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12105 58.9 58.9 78% 3e-09 28.57 2292 P17593.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12106 58.9 58.9 78% 3e-09 28.57 2292 P17594.2 RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotei... Cowpea mosai... NA 928299 56.2 56.2 92% 2e-08 28.14 1866 P03600.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Blackcurrant... NA 65743 55.1 55.1 92% 5e-08 27.11 2094 Q8V5E0.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tobacco ring... NA 12282 53.9 53.9 91% 1e-07 26.06 2304 Q88893.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Salivirus NG-J1 NA 651733 52.8 52.8 93% 4e-07 26.95 2374 C5MSH2.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Human klasse... NA 655603 52.4 52.4 93% 4e-07 26.95 2370 C6KEF6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Lordsdale virus NA 82658 52.0 52.0 78% 6e-07 29.08 1699 P54634.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Murine norov... NA 223997 49.7 49.7 79% 4e-06 31.94 1687 Q80J95.3 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Satsuma dwar... NA 650481 49.7 49.7 81% 4e-06 30.61 2081 Q9WAL8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Norovirus Hu... NA 524364 45.1 45.1 68% 1e-04 27.87 1789 Q83883.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Southampton ... NA 37129 44.3 44.3 68% 3e-04 27.87 1788 Q04544.2 Alignments: >RecName: Full=Replicase polyprotein [Acute bee paralysis virus strain Rothamsted] Sequence ID: Q9DSN9.1 Length: 1906 Range 1: 513 to 692 Score:381 bits(979), Expect:4e-122, Method:Compositional matrix adjust., Identities:180/180(100%), Positives:180/180(100%), Gaps:0/180(0%) Query 1 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 60 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM Sbjct 513 MRYLTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEM 572 Query 61 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 120 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH Sbjct 573 RNFSKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLH 632 Query 121 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSK 180 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSK Sbjct 633 MAHLEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTKMCWSK 692 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; AltName: Full=CrPV-1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968] Sequence ID: Q9IJX4.1 Length: 1771 Range 1: 485 to 636 Score:129 bits(325), Expect:6e-34, Method:Compositional matrix adjust., Identities:64/155(41%), Positives:92/155(59%), Gaps:3/155(1%) Query 7 VFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKN 66 +++ V S G P+ +PI +WL GESG GK+ M +PL ID+ + + + + Sbjct 485 LYEQVLLSPVKGGGPKMRPITVWLTGESGIGKTQMIYPLCIDILREM--GIVKPDAYKHQ 542 Query 67 IYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLED 126 Y R VE E+WD Y GQ IV DD Q++D + PNPE E+IRT N P LHMA L+D Sbjct 543 AYARQVETEYWDGYNGQKIVIYDDAFQLKDDKTKPNPEIFEVIRTCNTFPQHLHMAALQD 602 Query 127 KRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRV 161 K ++V++ T+N F+ + S+TFPDAF R+ Sbjct 603 KNMYS-QAEVLLYTTNQFQVQLESITFPDAFYNRM 636 >RecName: Full=Replicase polyprotein; Contains: RecName: Full=Protein 1A; Contains: RecName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Contains: RecName: Full=Protein 2C; Contains: RecName: Full=Protein 3A; Contains: RecName: Full=Protein 3B; Contains: RecName: Full=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL [Drosophila C virus strain EB] Sequence ID: O36966.1 Length: 1759 Range 1: 423 to 588 Score:129 bits(325), Expect:7e-34, Method:Compositional matrix adjust., Identities:68/169(40%), Positives:100/169(59%), Gaps:4/169(2%) Query 6 EVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSK 65 ++++ V S G PR +PI +WL GESG GK+ M +PL ID+ + + + +F Sbjct 423 QLYEYVSCSPVKGGGPRMRPICLWLVGESGVGKTEMVYPLCIDVLREM--GMIKKDDFHH 480 Query 66 NIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLE 125 +Y R VE EFWD Y+GQ IV DD Q +D + NPE E+IR+ N P LHMA L Sbjct 481 QVYGRQVETEFWDGYKGQKIVIYDDAFQKKDDKTAANPEIFEVIRSCNTFPQHLHMAALH 540 Query 126 DKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRV-DLCAEVKNKDEF 173 DK T +++++ T+N + + S+TFPDAF R+ D+ +V K E+ Sbjct 541 DK-NTFSAAELLLYTTNDYNVKLESITFPDAFFNRMGDMAYKVSPKKEY 588 >RecName: Full=RNA1 polyprotein; Contains: RecName: Full=Protease-cofactor; Contains: RecName: Full=Putative helicase; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Tomato torrado virus ESP/PRIToTV0301] Sequence ID: A1XIP9.1 Length: 2158 Range 1: 383 to 527 Score:81.3 bits(199), Expect:5e-17, Method:Compositional matrix adjust., Identities:53/153(35%), Positives:78/153(50%), Gaps:9/153(5%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P ++ +G SG GKS + L I N +LD ++E + +Y + +W NY Sbjct 383 RAEPFMVQWYGASGCGKS-TSMRLFI---NDVLDRMEEPK--LNRLYAVSKRDAYWSNYA 436 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q + DD G +RD + + +LI + P PL MA +EDK + FTS+ I TS Sbjct 437 HQTAILMDDMGALRDGAGQCQ-DIKDLIDIKSTQPAPLPMAAVEDKGR-HFTSRYIFATS 494 Query 142 NVFEQDVN-SLTFPDAFRRRVDLCAEVKNKDEF 173 N+ LT+PDAF RR D+ E + EF Sbjct 495 NLISAPAQCGLTYPDAFERRRDVLVECRKVGEF 527 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Calnek] Sequence ID: Q9YLS4.1 Length: 2134 Range 1: 1143 to 1283 Score:79.7 bits(195), Expect:2e-16, Method:Compositional matrix adjust., Identities:49/154(32%), Positives:81/154(52%), Gaps:14/154(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDEMRNFSKNIYMRNVEQEFWDNY 80 R +P V++L+G G GKS + +A+ L L + +V+ IY + + +FWD Y Sbjct 1143 RAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE-------GIYTKPIMSDFWDGY 1195 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ +V DD GQ S + ++ + + P L+MA+LE K+ T+F S II + Sbjct 1196 AGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRLNMANLE-KKGTQFNSPFIIAS 1249 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFT 174 SN+ ++ DA RR+ + +V K+EF+ Sbjct 1250 SNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFS 1283 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain L2Z] Sequence ID: Q6WQ42.1 Length: 2134 Range 1: 1143 to 1283 Score:79.3 bits(194), Expect:2e-16, Method:Compositional matrix adjust., Identities:49/154(32%), Positives:81/154(52%), Gaps:14/154(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDEMRNFSKNIYMRNVEQEFWDNY 80 R +P V++L+G G GKS + +A+ L L + +V+ IY + + +FWD Y Sbjct 1143 RAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE-------GIYTKPIMSDFWDGY 1195 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ +V DD GQ S + ++ + + P L+MA+LE K+ T+F S II + Sbjct 1196 AGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRLNMANLE-KKGTQFNSPFIIAS 1249 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFT 174 SN+ ++ DA RR+ + +V K+EF+ Sbjct 1250 SNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFS 1283 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B; Short=P3B; AltName: Full=VPg; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Avian encephalomyelitis virus strain Van Reokel] Sequence ID: Q6R325.1 Length: 2134 Range 1: 1143 to 1283 Score:79.3 bits(194), Expect:2e-16, Method:Compositional matrix adjust., Identities:49/154(32%), Positives:81/154(52%), Gaps:14/154(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSL-LDNVDEMRNFSKNIYMRNVEQEFWDNY 80 R +P V++L+G G GKS + +A+ L L + +V+ IY + + +FWD Y Sbjct 1143 RAEPTVLYLYGNRGGGKSLASMAIAVKLCKELGISHVE-------GIYTKPIMSDFWDGY 1195 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ +V DD GQ S + ++ + + P L+MA+LE K+ T+F S II + Sbjct 1196 AGQPVVIMDDLGQ-----STSDEDWTNFCQLVSSCPLRLNMANLE-KKGTQFNSPFIIAS 1249 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFT 174 SN+ ++ DA RR+ + +V K+EF+ Sbjct 1250 SNLSHPCPKTVYCTDAIARRLHIKVKVSPKEEFS 1283 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Norway/NOR-21/1998] Sequence ID: Q9DWR1.4 Length: 2228 Range 1: 1219 to 1359 Score:71.2 bits(173), Expect:1e-13, Method:Compositional matrix adjust., Identities:50/153(33%), Positives:76/153(49%), Gaps:12/153(7%) Query 21 PRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNY 80 PR +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1219 PRCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGY 1272 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II T Sbjct 1273 SGQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIAT 1326 Query 141 SNVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 SN ++ +A RR+ EVK F Sbjct 1327 SNWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/China/H2/1982] Sequence ID: A3FMB2.1 Length: 2227 Range 1: 1220 to 1359 Score:68.6 bits(166), Expect:1e-12, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VP1-pX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Australia/HM175/1976] Sequence ID: P08617.1 Length: 2227 Range 1: 1220 to 1359 Score:68.6 bits(166), Expect:1e-12, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Los Angelos/LA/1975] Sequence ID: P06441.1 Length: 2227 Range 1: 1220 to 1359 Score:68.6 bits(166), Expect:1e-12, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Japan/HAJ85-1/1985] Sequence ID: A5LGW7.1 Length: 2228 Range 1: 1220 to 1359 Score:68.2 bits(165), Expect:1e-12, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 1 ATCC PV132] Sequence ID: Q76L40.1 Length: 1842 Range 1: 461 to 618 Score:68.2 bits(165), Expect:2e-12, Method:Compositional matrix adjust., Identities:52/172(30%), Positives:84/172(48%), Gaps:15/172(8%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 LTE+ SV SGA N R P +++ G+SG GK+ + +A + + + + Sbjct 461 LTELHNSVIMSGA--NSTRKTPFMLFFTGKSGVGKTSVVQRMAANW-------LQQEQLG 511 Query 64 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 S +Y RN FW Y+ Q +V DDFG + S SN E+I + P+ + MA Sbjct 512 SNEVYSRNGLDPFWSGYKRQAVVTYDDFGAVPGSVSNE----AEIINVVSSNPHSVMMAD 567 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNSLTF-PDAFRRRVDLCAEVKNKDEFT 174 L++K F S++II +SN + S +A+ RR + +V K++ Sbjct 568 LKEK-GMYFDSRLIIASSNFLAANPESGVHDSEAYERRRHVVVQVSLKEDMA 618 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/France/CF-53/1979] Sequence ID: Q5Y944.1 Length: 2225 Range 1: 1220 to 1359 Score:67.8 bits(164), Expect:2e-12, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKIEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Northern Africa/MBB/1978] Sequence ID: P13901.1 Length: 2227 Range 1: 1220 to 1360 Score:67.8 bits(164), Expect:2e-12, Method:Compositional matrix adjust., Identities:50/154(32%), Positives:77/154(50%), Gaps:13/154(8%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPLRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEFTK 175 N ++ +A RR+ EV N F+K Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEV-NPASFSK 1360 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Sierra Leone/SLF88/1988] Sequence ID: Q8V0N6.1 Length: 2227 Range 1: 1220 to 1359 Score:67.8 bits(164), Expect:2e-12, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKIEVKPASFF 1359 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Simian hepatitis A virus Cercopithecus/Kenya/AGM-27/1985] Sequence ID: P14553.2 Length: 2230 Range 1: 1224 to 1358 Score:67.4 bits(163), Expect:3e-12, Method:Compositional matrix adjust., Identities:48/147(33%), Positives:74/147(50%), Gaps:12/147(8%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L+G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1224 RCEPVVCYLYGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1277 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1278 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1331 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVK 168 N ++ +A RR+ EVK Sbjct 1332 NWSNPSPKTVYVKEAIDRRLHYKIEVK 1358 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Germany/GBM/1976] Sequence ID: Q67825.1 Length: 2227 Range 1: 1220 to 1359 Score:67.4 bits(163), Expect:3e-12, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:74/152(48%), Gaps:12/152(7%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V +L G+ G GKS + LA + V+ KNIY + V ++WD Y Sbjct 1220 RCEPVVCYLIGKRGGGKSLTSIALATKICKHY--GVEP----EKNIYTKPVASDYWDGYS 1273 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ + DD GQ +++ +F +L+ P L+MA LE+K + F+S II TS Sbjct 1274 GQLVCIIDDIGQ--NTTDEDWSDFCQLVSG---CPMRLNMASLEEKGR-HFSSPFIIATS 1327 Query 142 NVFEQDVNSLTFPDAFRRRVDLCAEVKNKDEF 173 N ++ +A RR+ EVK F Sbjct 1328 NWSNPSPKTVYVKEAIDRRLHFKVEVKPASFF 1359 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Bean-pod mottle virus (strain Kentucky G7)] Sequence ID: Q9YJU5.1 Length: 1850 Range 1: 465 to 607 Score:65.5 bits(158), Expect:1e-11, Method:Compositional matrix adjust., Identities:52/155(34%), Positives:76/155(49%), Gaps:15/155(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R P VI+ GES GKS + ++ + D D + +Y RN FW Y+ Sbjct 465 RKIPFVIFAHGESRVGKSLL-------VDRLITDFCDHLEIGEDAVYSRNPSDPFWSGYR 517 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q IV DDF + S P+ E +LI + APYP++MA LE+K F S++++ +S Sbjct 518 RQPIVTIDDFAAV---VSEPSAE-AQLIPLVSSAPYPINMAGLEEK-GMHFDSQIMMCSS 572 Query 142 NVFEQDVNSLTFPD-AF--RRRVDLCAEVKNKDEF 173 N E + D AF RR V + E+K E+ Sbjct 573 NFLEPSPEAKIRDDMAFRNRRHVLITVELKPGVEY 607 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea severe mosaic virus (strain DG)] Sequence ID: P36312.1 Length: 1858 Range 1: 472 to 599 Score:64.7 bits(156), Expect:3e-11, Method:Compositional matrix adjust., Identities:48/140(34%), Positives:71/140(50%), Gaps:13/140(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R P V++ G S GK+ + +N + D E+ +Y RNV ++W Y+ Sbjct 472 RKIPFVVYAHGASRVGKT-------MVINRLIEDFRKELELGEDCVYPRNVVDDYWSGYK 524 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q IV DDFG + SS+P+ E +LI + APYPL+MA L +K F S +++ +S Sbjct 525 RQPIVVIDDFGAV---SSDPSAE-AQLIPLISSAPYPLNMADLSEK-GMHFDSAIVMCSS 579 Query 142 NVFEQDVNSLTFPD-AFRRR 160 N E S + AFR R Sbjct 580 NFIECSPESKVRDEMAFRNR 599 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; AltName: Full=Protein 3B; Short=P3B; AltName: Full=Viral protein genome-linked; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Seneca Valley virus USA/SSV-001] Sequence ID: Q155Z9.1 Length: 2181 Range 1: 1187 to 1320 Score:62.0 bits(149), Expect:2e-10, Method:Compositional matrix adjust., Identities:47/149(32%), Positives:75/149(50%), Gaps:18/149(12%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF-SKNIYMRNVEQEFWDNY 80 R +P+V+ L G+ G GKS L ++L+ R + S+++Y + +F+D Y Sbjct 1187 RVEPVVVVLRGKPGCGKS---------LASTLIAQAVSKRLYGSQSVYSLPPDPDFFDGY 1237 Query 81 QGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMT 140 +GQ + DD GQ D F +++ TA P +MA L +K + FTS +II T Sbjct 1238 KGQFVTLMDDLGQNPDGQDFST--FCQMVSTAQFLP---NMADLAEKGR-PFTSNLIIAT 1291 Query 141 SNVFEQDVNSLTFPDAFRRRV--DLCAEV 167 +N+ ++ P A RR+ DL EV Sbjct 1292 TNLPHFSPVTIADPSAVSRRINYDLTLEV 1320 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 2] Sequence ID: Q9WNW0.1 Length: 1870 Range 1: 489 to 632 Score:60.8 bits(146), Expect:5e-10, Method:Compositional matrix adjust., Identities:46/158(29%), Positives:75/158(47%), Gaps:15/158(9%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 L E+ SV SG+ N R P +++ G SG GK+ + +AI+ + E + Sbjct 489 LIELHNSVVMSGS--NTTRKAPFMVFFTGASGTGKTSVVQRVAINW-------LQEEQLG 539 Query 64 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 + IY RN + FW Y+ +V DDFG + ++SN E+I + PY MA Sbjct 540 TNEIYSRNGQDPFWSGYKRHAVVTYDDFGAVPGTTSNE----AEIINVISRNPYATVMAG 595 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNSLTF-PDAFRRR 160 L +K F S++++ + N + S +A+ RR Sbjct 596 LAEK-GMYFDSRLVLASRNFLAANPESGVHDSEAYERR 632 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Parsnip yellow fleck virus (isolate P-121)] Sequence ID: Q05057.1 Length: 3027 Range 1: 1457 to 1599 Score:60.8 bits(146), Expect:5e-10, Method:Compositional matrix adjust., Identities:49/152(32%), Positives:75/152(49%), Gaps:10/152(6%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R P + L+G G GKS + L D+ LD + E + + Y + +E+W Y Sbjct 1457 RVDPFHVSLYGSPGVGKSFVMGKLLDDV----LDFMSEPQ--ADRCYSKTPNEEYWSGYI 1510 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 GQ V DD GQ D S +P + ++I+ + + MA L +K +T FTSK I T+ Sbjct 1511 GQTAVKCDDLGQ--DLSKGFSPTYNQIIQMKTNNCFIVPMADLANKGRT-FTSKYIFSTT 1567 Query 142 NVFEQDV-NSLTFPDAFRRRVDLCAEVKNKDE 172 NV + L P AF RR ++ EV+ + + Sbjct 1568 NVPGCGTKHGLADPGAFMRRRNIFVEVETEGD 1599 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Mengo virus] Sequence ID: P12296.3 Length: 2293 Range 1: 1304 to 1429 Score:60.1 bits(144), Expect:9e-10, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:74/140(52%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1304 RCEPVVIVLRGDAGQGKSLSSQIIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1355 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N+ P +MA LE ++ T FTS++++ T+ Sbjct 1356 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNLLP---NMASLE-RKGTPFTSQLVVATT 1409 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1410 NLPEFRPVTIAHYPAVERRI 1429 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [cardiovirus A1] Sequence ID: Q66765.1 Length: 2292 Range 1: 1303 to 1428 Score:59.3 bits(142), Expect:2e-09, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:73/140(52%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N P +MA LE ++ T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RKGTPFTSQLVVATT 1408 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1409 NLPEFRPVTIAHYPAVERRI 1428 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus] Sequence ID: P03304.1 Length: 2290 Range 1: 1301 to 1426 Score:59.3 bits(142), Expect:2e-09, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:73/140(52%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1301 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1352 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N P +MA LE ++ T FTS++++ T+ Sbjct 1353 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RKGTPFTSQLVVATT 1406 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1407 NLPEFRPVTIAHYPAVERRI 1426 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-b nondiabetogenic] Sequence ID: P17593.1 Length: 2292 Range 1: 1303 to 1428 Score:58.9 bits(141), Expect:3e-09, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:72/140(51%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N P +MA LE + T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RNGTPFTSQIVVATT 1408 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1409 NLPEFRPVTIAHYPAVERRI 1428 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-d diabetogenic] Sequence ID: P17594.2 Length: 2292 Range 1: 1303 to 1428 Score:58.9 bits(141), Expect:3e-09, Method:Compositional matrix adjust., Identities:40/140(29%), Positives:72/140(51%), Gaps:14/140(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI L G++G+GKS + +A ++ ++ +++Y + +F+D Y+ Sbjct 1303 RCEPVVIVLRGDAGQGKSLSSQVIAQAVSKTIFGR--------QSVYSLPPDSDFFDGYE 1354 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 Q DD GQ D S F +++ T N P +MA LE + T FTS++++ T+ Sbjct 1355 NQFAAIMDDLGQNPDGSDFTT--FCQMVSTTNFLP---NMASLE-RNGTPFTSQIVVATT 1408 Query 142 NVFEQDVNSLTFPDAFRRRV 161 N+ E ++ A RR+ Sbjct 1409 NLPEFRPVTIAHYPAVERRI 1428 >RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotein; AltName: Full=Bottom component polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea mosaic virus strain SB] Sequence ID: P03600.1 Length: 1866 Range 1: 468 to 620 Score:56.2 bits(134), Expect:2e-08, Method:Compositional matrix adjust., Identities:47/167(28%), Positives:76/167(45%), Gaps:15/167(8%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 L ++ +S G G R P I+ G+S GKS + + D D Sbjct 468 LEQLNRSCSVQGVRG--VRKMPFTIFFQGKSRTGKSLLMSQVTKDFQ-------DHYGLG 518 Query 64 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 + +Y RN ++W Y+ Q V DDF + + P+ E ++I + APYPL+MA Sbjct 519 GETVYSRNPCDQYWSGYRRQPFVLMDDFAAV---VTEPSAE-AQMINLISSAPYPLNMAG 574 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNSLTFPD-AFRRRVDLCAEVKN 169 LE+K F S+ + +++N E + D AF+ R + +V N Sbjct 575 LEEK-GICFDSQFVFVSTNFLEVSPEAKVRDDEAFKNRRHVIVQVSN 620 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Blackcurrant reversion virus] Sequence ID: Q8V5E0.1 Length: 2094 Range 1: 672 to 824 Score:55.1 bits(131), Expect:5e-08, Method:Compositional matrix adjust., Identities:45/166(27%), Positives:80/166(48%), Gaps:14/166(8%) Query 4 LTEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNF 63 LT++ + +G+F + R +P +++G+S GKS D++ +LL N Sbjct 672 LTKIRATCARAGSFDGR-RPEPFWCYIYGKSHCGKSLFME----DVSRALLKENGHAPN- 725 Query 64 SKNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAH 123 +IY +N FW Y V DD S + EF++L+ + Y L+MA Sbjct 726 --DIYAKNARDSFWSGYLQHACVQVDDLSACVTRPSLES-EFLQLVGSKM---YSLNMAA 779 Query 124 LEDKRKTKFTSKVIIMTSNVFEQDVNS-LTFPDAFRRRVDLCAEVK 168 +EDK F S +I+ T+NV+ ++ +T DA+ R ++ + + Sbjct 780 VEDK-GMSFNSSIIVTTANVYTAPTSAEITDKDAYGNRRNVVVQCR 824 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tobacco ringspot virus] Sequence ID: Q88893.1 Length: 2304 Range 1: 796 to 946 Score:53.9 bits(128), Expect:1e-07, Method:Compositional matrix adjust., Identities:43/165(26%), Positives:82/165(49%), Gaps:16/165(9%) Query 14 SGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKN-IYMRNV 72 +G F + R +P +++ G S GKS + P++ +L + FS++ IY +N Sbjct 796 AGYFEGR-RMEPFWVYIHGPSHCGKSLLMEPMSRELLRA--------GGFSESSIYTKNS 846 Query 73 EQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKF 132 ++W Y+ Q V DD + ++P+ E +LI PL MA +EDK F Sbjct 847 CDKYWSRYRRQACVQIDD---LSAGKTDPSLE-SQLINLVASKEVPLDMAEVEDK-GILF 901 Query 133 TSKVIIMTSNVFEQDVNS-LTFPDAFRRRVDLCAEVKNKDEFTKM 176 S +++ +SN N+ + +A++ R+++ + + K E++ M Sbjct 902 DSAILVTSSNTAHVPTNANVNHAEAYKNRMNVVIQCRRKPEYSPM 946 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Salivirus NG-J1] Sequence ID: C5MSH2.2 Length: 2374 Range 1: 1362 to 1514 Score:52.8 bits(125), Expect:4e-07, Method:Composition-based stats., Identities:45/167(27%), Positives:82/167(49%), Gaps:14/167(8%) Query 5 TEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFS 64 + ++ G G +P +P+V++L+G G GKS + LA L +L + + + S Sbjct 1362 STALSAISLVGTPGTRP--EPLVVYLYGPPGTGKSLLASLLASTLAQALSGDPNNYYSPS 1419 Query 65 KNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHL 124 + + +F+D Y GQ + DD GQ D + ++ + + + AP+ + MA + Sbjct 1420 ------SPDCKFYDGYSGQPVHYIDDIGQDPDGA-----DWADFVNIVSSAPFIVPMADV 1468 Query 125 EDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKD 171 DK + +TS+V+I+TSN + S A RR+ + V +D Sbjct 1469 NDKGRF-YTSRVVIVTSNFPGPNPRSARCVAALERRLHIRLNVTARD 1514 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human klassevirus 1] Sequence ID: C6KEF6.1 Length: 2370 Range 1: 1359 to 1511 Score:52.4 bits(124), Expect:4e-07, Method:Composition-based stats., Identities:45/167(27%), Positives:82/167(49%), Gaps:14/167(8%) Query 5 TEVFKSVDTSGAFGNKPRTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFS 64 + ++ G G +P +P+V++L+G G GKS + LA L +L + + + S Sbjct 1359 STALSAISLVGTPGTRP--EPLVVYLYGPPGTGKSLLASLLASTLAQALSGDPNNYYSPS 1416 Query 65 KNIYMRNVEQEFWDNYQGQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHL 124 + + +F+D Y GQ + DD GQ D + ++ + + + AP+ + MA + Sbjct 1417 ------SPDCKFYDGYSGQPVHYIDDIGQDPDGA-----DWADFVNIVSSAPFIVPMADV 1465 Query 125 EDKRKTKFTSKVIIMTSNVFEQDVNSLTFPDAFRRRVDLCAEVKNKD 171 DK + +TS+V+I+TSN + S A RR+ + V +D Sbjct 1466 NDKGRF-YTSRVVIVTSNFPGPNPRSARCVAALERRLHIRLNVTARD 1511 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Nterm; AltName: Full=Protein p37; Contains: RecName: Full=NS1; Contains: RecName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p40; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Lordsdale virus] Sequence ID: P54634.1 Length: 1699 Range 1: 485 to 612 Score:52.0 bits(123), Expect:6e-07, Method:Compositional matrix adjust., Identities:41/141(29%), Positives:67/141(47%), Gaps:13/141(9%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+V+ + G+ G GK+ + LA + SL + + RN + WD Y+ Sbjct 485 RLRPVVVMISGKPGIGKTHLARELAKRIAASLTGDQ------RVGLIPRN-GVDHWDAYK 537 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 G+ +V DD+G SNP + + L A+ P L+ +E+K K F S II+T+ Sbjct 538 GERVVLWDDYGM-----SNPIHDALRLQELADTCPLTLNCDRIENKGKV-FDSDAIIITT 591 Query 142 NVFEQDVNSLTFPDAFRRRVD 162 N+ +A RR+D Sbjct 592 NLANPAPLDYVNFEACSRRID 612 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Protein p37; Contains: RecName: Full=NS1; Contains: RecName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p41; Contains: RecName: Full=NS4; AltName: Full=Protein p20; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Murine norovirus 1] Sequence ID: Q80J95.3 Length: 1687 Range 1: 494 to 622 Score:49.7 bits(117), Expect:4e-06, Method:Compositional matrix adjust., Identities:46/144(32%), Positives:68/144(47%), Gaps:17/144(11%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI + G G GK+ LA + SL D S I R + + WD Y+ Sbjct 494 RVRPVVIMVSGRPGIGKTCFCQNLAKRIAASLGDET------SVGIIPR-ADVDHWDAYK 546 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 G +V DDFG N + + L A+ P L+ +E+K K F S+VII+T+ Sbjct 547 GARVVLWDDFGM-----DNVVKDALRLQMLADTCPVTLNCDRIENKGKM-FDSQVIIITT 600 Query 142 NVFEQDVNSLTFP--DAFRRRVDL 163 N +Q L + +A RR+D Sbjct 601 N--QQTPVPLDYVNLEAVCRRIDF 622 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Satsuma dwarf virus S-58] Sequence ID: Q9WAL8.1 Length: 2081 Range 1: 734 to 871 Score:49.7 bits(117), Expect:4e-06, Method:Compositional matrix adjust., Identities:45/147(31%), Positives:63/147(42%), Gaps:10/147(6%) Query 25 PIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQGQN 84 P V++ G+SG GKS +LD + + + Y RN ++FW Y Sbjct 734 PFVLFFAGDSGVGKSTAMK----KFREEVLDKLGYPK--TARFYPRNPGEKFWSGYLRHT 787 Query 85 IVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTSNVF 144 V DDF Q+ + ELIR A + MA E+K +T F SK + +N + Sbjct 788 AVIYDDFAQIPQGDMTYDEA--ELIRIVTNAVVTVPMAIAEEKGRT-FRSKFVFACTNRY 844 Query 145 -EQDVNSLTFPDAFRRRVDLCAEVKNK 170 E + L AFRRR L V K Sbjct 845 CESEDAPLADEMAFRRRRHLYIHVARK 871 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Protein p48; Contains: RecName: Full=NS1; Contains: RecName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p40; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Norovirus Hu/1968/US] Sequence ID: Q83883.1 Length: 1789 Range 1: 550 to 658 Score:45.1 bits(105), Expect:1e-04, Method:Compositional matrix adjust., Identities:34/122(28%), Positives:56/122(45%), Gaps:13/122(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI + G G GK+ LA L N E+R K + + WD Y Sbjct 550 RMRPVVIMMCGPPGIGKTKAAEHLAKRLAN-------EIRPGGKVGLVPREAVDHWDGYH 602 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 G+ ++ DD+G + + +L A+ AP L+ +E+K +F S I++T+ Sbjct 603 GEEVMLWDDYGMTKIQE-----DCNKLQAIADSAPLTLNCDRIENK-GMQFVSDAIVITT 656 Query 142 NV 143 N Sbjct 657 NA 658 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Protein p48; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p41; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Southampton virus (serotype 3)] Sequence ID: Q04544.2 Length: 1788 Range 1: 551 to 659 Score:44.3 bits(103), Expect:3e-04, Method:Compositional matrix adjust., Identities:34/122(28%), Positives:56/122(45%), Gaps:13/122(10%) Query 22 RTQPIVIWLFGESGRGKSGMTWPLAIDLNNSLLDNVDEMRNFSKNIYMRNVEQEFWDNYQ 81 R +P+VI + G G GK+ LA L N E+R K + + WD Y Sbjct 551 RMRPVVIMMCGPPGIGKTKAAEHLAKRLAN-------EIRPGGKVGLVPREAVDHWDGYH 603 Query 82 GQNIVCXDDFGQMRDSSSNPNPEFMELIRTANIAPYPLHMAHLEDKRKTKFTSKVIIMTS 141 G+ ++ DD+G + + +L A+ AP L+ +E+K +F S I++T+ Sbjct 604 GEEVMLWDDYGMTKILD-----DCNKLQAIADSAPLTLNCDRIENK-GMQFVSDAIVITT 657 Query 142 NV 143 N Sbjct 658 NA 659