BLASTP 2.12.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: prot.fasta 21,727 sequences; 6,750,009 total letters Query= sp|P0A6H1|CLPX_ECOLI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Escherichia coli (strain K12) OX=83333 GN=clpX PE=1 SV=2 Length=424 Score E Sequences producing significant alignments: (Bits) Value sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subun... 805 0.0 sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subun... 619 0.0 sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subun... 613 0.0 sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subun... 612 0.0 sp|Q8G0I5|CLPX_BRUSU ATP-dependent Clp protease ATP-binding subun... 586 0.0 sp|Q165G0|CLPX_ROSDO ATP-dependent Clp protease ATP-binding subun... 582 0.0 sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subun... 557 0.0 sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU O... 95.1 2e-21 sp|Q16CY2|HSLU_ROSDO ATP-dependent protease ATPase subunit HslU O... 93.6 6e-21 sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU O... 93.6 6e-21 sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU O... 93.2 8e-21 sp|Q8FY12|HSLU_BRUSU ATP-dependent protease ATPase subunit HslU O... 90.9 4e-20 tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia... 46.2 2e-05 tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease... 45.8 2e-05 sp|Q168A2|RUVB_ROSDO Holliday junction branch migration complex s... 45.4 2e-05 tr|A0A0H3GCZ6|A0A0H3GCZ6_BRUSU ATP-dependent zinc metalloprotease... 45.4 3e-05 >sp|Q8ZC66|CLPX_YERPE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Yersinia pestis OX=632 GN=clpX PE=3 SV=1 Length=423 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/424 (93%), Positives = 412/424 (97%), Gaps = 1/424 (0%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRE 60 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV+PHR+ Sbjct 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVSPHRD 60 Query 61 RSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGP 120 RS+LPTPHEIR+HLDDYVIGQE AKKVLAVAVYNHYKRLRNGDTSNG+ELGKSNILLIGP Sbjct 61 RSSLPTPHEIRHHLDDYVIGQEPAKKVLAVAVYNHYKRLRNGDTSNGIELGKSNILLIGP 120 Query 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI Sbjct 121 TGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGI 180 Query 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 240 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT+AAVPPQGGRKHPQQEFLQVDT Sbjct 181 VYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTIAAVPPQGGRKHPQQEFLQVDT 240 Query 241 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 300 SKILFICGGAFAGLDKVI R+ TGSGIGFGA VK +S+KA+EGELL+QVEPEDLIKFGL Sbjct 241 SKILFICGGAFAGLDKVIGQRINTGSGIGFGAVVKGQSEKATEGELLSQVEPEDLIKFGL 300 Query 301 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAK 360 IPEFIGRLPVVATL+ELSE+ALIQILKEPKNALTKQYQALF+LEGV+LEFRDEAL AIAK Sbjct 301 IPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAK 360 Query 361 KAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQ 420 KAMARKTGARGLRSIVE ALLDTMYDLPSM+ VEKVV+DESVI GQS P+LIYG+PEA Q Sbjct 361 KAMARKTGARGLRSIVEGALLDTMYDLPSMDSVEKVVVDESVIAGQSAPMLIYGQPEA-Q 419 Query 421 ASGE 424 ASGE Sbjct 420 ASGE 423 >sp|Q5P160|CLPX_AROAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=clpX PE=3 SV=1 Length=422 Score = 619 bits (1597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/417 (75%), Positives = 353/417 (85%), Gaps = 5/417 (1%) Query 1 MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKE-VAPHR 59 MTDK K G KLLYCSFCGKSQHEVRKLIAGPSV+ICDEC++LCNDIIR+EI E V Sbjct 1 MTDK-KAGGEKLLYCSFCGKSQHEVRKLIAGPSVFICDECIELCNDIIRDEIAETVDAEG 59 Query 60 ERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRN-GDTSNGVELGKSNILLI 118 R+ LPTP EI L+ YVIGQ QAK+ L+VAVYNHYKRLR+ VEL KSNILLI Sbjct 60 TRTTLPTPQEICEILNQYVIGQTQAKRNLSVAVYNHYKRLRHLSGRKEEVELSKSNILLI 119 Query 119 GPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 GPTGSGKTLLA+TLARLL+VPF MADATTLTEAGYVGEDVENIIQKLLQKCDYDV KAQ Sbjct 120 GPTGSGKTLLAQTLARLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQH 179 Query 179 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQV 238 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHP Q+F+Q+ Sbjct 180 GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPNQDFIQI 239 Query 239 DTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKF 298 DT+ ILFICGGAF GL+KVI +R E GIGFGA +K++ K + E QVEPEDLIKF Sbjct 240 DTTNILFICGGAFDGLEKVIRNRTEK-IGIGFGAEIKSREGK-NVSESFRQVEPEDLIKF 297 Query 299 GLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAI 358 GLIPEF+GRLPVVATL EL EEALIQIL EPKNAL KQYQ LF++EGVDLE R AL A+ Sbjct 298 GLIPEFVGRLPVVATLQELDEEALIQILVEPKNALVKQYQKLFSMEGVDLEIRPAALHAV 357 Query 359 AKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415 A+KA+ RKTGARGLRSI+E+ALLD MYDLP++E VEKVV+DE I+ ++PLL+Y + Sbjct 358 ARKAIRRKTGARGLRSILESALLDIMYDLPTLEGVEKVVVDEGTIEEGAQPLLMYAE 414 >sp|A4SXD7|CLPX_POLAQ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Polynucleobacter asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) OX=312153 GN=clpX PE=3 SV=1 Length=453 Score = 613 bits (1580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/435 (71%), Positives = 350/435 (80%), Gaps = 30/435 (7%) Query 7 DGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPT 66 + S K+LYCSFCGKSQHEV+KLIAGPSV+ICDEC+DLC DII+EEI ++ +LPT Sbjct 8 NSSEKVLYCSFCGKSQHEVKKLIAGPSVFICDECIDLCTDIIQEEIAKLPKEEGDESLPT 67 Query 67 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRL------------RNGD----------- 103 PHEIR +LD YVIGQE AKK LAVAVYNHYKRL ++G Sbjct 68 PHEIRGNLDQYVIGQEHAKKTLAVAVYNHYKRLQYLPKPKKEKLDKDGKPVEASDKKESK 127 Query 104 -----TSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 158 +GVEL KSNILLIGPTGSGKTLLA+TLAR+LDVPF MADATTLTEAGYVGEDV Sbjct 128 LPAKAIVDGVELAKSNILLIGPTGSGKTLLAQTLARMLDVPFVMADATTLTEAGYVGEDV 187 Query 159 ENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 218 ENIIQKLLQ CDY+V+KAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKL+EGT Sbjct 188 ENIIQKLLQACDYNVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLVEGT 247 Query 219 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS 278 +A+VPPQGGRKHP Q+FLQVDT+ ILFICGGAF GL+KVI R +GIGF ATV K Sbjct 248 MASVPPQGGRKHPNQDFLQVDTTNILFICGGAFDGLEKVIQQRT-AKTGIGFNATVPGK- 305 Query 279 DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQ 338 D+ +LL +VEPEDLIKFGLIPE IGRLPVVATL +L EEALIQIL EPKNAL KQYQ Sbjct 306 DERGVSDLLIEVEPEDLIKFGLIPELIGRLPVVATLAQLDEEALIQILTEPKNALVKQYQ 365 Query 339 ALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVI 398 AL +EG +LE R EAL AIAKKA+ARKTGARGLRSI+E +L+D MYDLPS+++V+KVVI Sbjct 366 ALLTMEGSELEVRREALSAIAKKAIARKTGARGLRSILEGSLMDVMYDLPSLKNVQKVVI 425 Query 399 DESVIDGQSKPLLIY 413 DES I KPLL+Y Sbjct 426 DESSIAEGGKPLLVY 440 >sp|P57981|CLPX_PASMU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pasteurella multocida (strain Pm70) OX=272843 GN=clpX PE=3 SV=1 Length=411 Score = 612 bits (1579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/403 (74%), Positives = 342/403 (85%), Gaps = 2/403 (0%) Query 13 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEV--APHRERSALPTPHEI 70 L+CSFCGK Q V KLIAG S YIC+EC++LC+D++ + E E+ LPTPHEI Sbjct 7 LHCSFCGKEQKHVSKLIAGTSGYICNECIELCHDMLLSDAVETPEVESTEQQKLPTPHEI 66 Query 71 RNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAE 130 R HLDDYVIGQ+ AKKVL+VAVYNHYKRLR+ VELGKSNILLIGPTGSGKTLLAE Sbjct 67 RAHLDDYVIGQDYAKKVLSVAVYNHYKRLRSDKQITDVELGKSNILLIGPTGSGKTLLAE 126 Query 131 TLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIS 190 T+AR+L+VPF MADATTLTEAGYVGEDVEN++QKL+Q CDYDV++A++GI+YIDEIDKI+ Sbjct 127 TMARMLNVPFAMADATTLTEAGYVGEDVENVLQKLVQSCDYDVERAEQGIIYIDEIDKIT 186 Query 191 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGA 250 RKS+NPSITRDVSGEGVQQALLKLIEGTVA++PPQGGRKHPQQE L+VDTSKILFICGGA Sbjct 187 RKSENPSITRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQEMLRVDTSKILFICGGA 246 Query 251 FAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPV 310 FAGLDKVI RV GSGIGF A VK+K DKA+ +L QVEP+DL+KFGLIPEFIGRLPV Sbjct 247 FAGLDKVIEKRVHVGSGIGFSAEVKSKQDKATLSQLFEQVEPDDLMKFGLIPEFIGRLPV 306 Query 311 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGAR 370 VA L EL EEAL++IL EPKNAL KQYQALF+LE V LEF EAL A+AKKA+ARKTGAR Sbjct 307 VAPLAELDEEALVKILTEPKNALIKQYQALFSLEDVALEFSPEALTAMAKKALARKTGAR 366 Query 371 GLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GLRSIVEA LLDTMYDLPS++ +EKV+++ S I P L+Y Sbjct 367 GLRSIVEAILLDTMYDLPSLQHLEKVIVEASTITDNQPPTLVY 409 >sp|Q8G0I5|CLPX_BRUSU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=clpX PE=3 SV=1 Length=424 Score = 586 bits (1511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 288/414 (70%), Positives = 346/414 (84%), Gaps = 3/414 (1%) Query 9 SGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPH 68 S LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + R +PTP Sbjct 11 SKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKS-SMVKSREGVPTPQ 69 Query 69 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 128 EI LDDYVIGQ+ AK+VL+VAV+NHYKRL + ++ +EL KSNILL+GPTG GKT L Sbjct 70 EIMAVLDDYVIGQKDAKRVLSVAVHNHYKRLAHQSKNSDIELAKSNILLVGPTGCGKTYL 129 Query 129 AETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDK 188 A+TLAR++DVPF MADATTLTEAGYVGEDVENII KLLQ DY+V++AQRGIVYIDE+DK Sbjct 130 AQTLARIIDVPFIMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQRGIVYIDEVDK 189 Query 189 ISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 248 ISRKSDNPSITRDVSGEGVQQALLK++EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFICG Sbjct 190 ISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICG 249 Query 249 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRL 308 GAFAGLD++IS R E S IGFGATVK+ D+ GE+ ++EPEDL+KFGLIPEF+GRL Sbjct 250 GAFAGLDRIISARGEKTS-IGFGATVKS-VDERRIGEVFKELEPEDLLKFGLIPEFVGRL 307 Query 309 PVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTG 368 PV+ATL +L +AL+QIL EPKNAL KQYQ LF++E V+L F D+AL AIA KA+ KTG Sbjct 308 PVIATLEDLDVDALVQILTEPKNALVKQYQRLFDMENVELVFHDDALRAIANKAVEHKTG 367 Query 369 ARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 ARGLRSI+E LLDTM++LP++E V +VVI V+DG ++PL IY + + ++ + Sbjct 368 ARGLRSIMEKILLDTMFELPTLEGVREVVISGDVVDGSARPLYIYAERQDEKGN 421 >sp|Q165G0|CLPX_ROSDO ATP-dependent Clp protease ATP-binding subunit ClpX OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=clpX PE=3 SV=1 Length=421 Score = 582 bits (1499), Expect = 0.0, Method: Compositional matrix adjust. Identities = 286/416 (69%), Positives = 341/416 (82%), Gaps = 4/416 (1%) Query 8 GSGK-LLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPT 66 G GK LYCSFCGKSQHEVRKLIAGP+V+ICDECV+LC DIIREE K + + +PT Sbjct 7 GDGKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREETK-ASGLKATDGVPT 65 Query 67 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKT 126 P +I LDDYVIGQ AK+VL+VAV+NHYKRL + +EL KSNILLIGPTG GKT Sbjct 66 PKDICAVLDDYVIGQAMAKRVLSVAVHNHYKRLNHAQKGGDIELAKSNILLIGPTGCGKT 125 Query 127 LLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEI 186 LLA+TLAR+LDVPFTMADATTLTEAGYVGEDVENII KLLQ +Y+V++AQRGIVYIDE+ Sbjct 126 LLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILKLLQSSEYNVERAQRGIVYIDEV 185 Query 187 DKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFI 246 DKI+RKS+NPSITRDVSGEGVQQALLKL+EGTVA+VPPQGGRKHPQQEFLQVDT+ ILFI Sbjct 186 DKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFI 245 Query 247 CGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 306 CGGAFAGLDK+I+ R + GS +GFGA V+ D+ GE+ +EPEDL+KFGLIPEF+G Sbjct 246 CGGAFAGLDKIIAARGK-GSAMGFGADVRGNDDRGV-GEIFTDLEPEDLLKFGLIPEFVG 303 Query 307 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK 366 RLPV+ATL +L E+AL+ IL +PKNAL KQYQ LF LE +L F D+AL AIAK+A+ RK Sbjct 304 RLPVLATLEDLDEDALVTILTQPKNALVKQYQRLFELEDTELTFTDDALSAIAKRAIERK 363 Query 367 TGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQQAS 422 TGARGLRSI+E LLDTM+DLP +E V +VV++E ++ + PL+I+ + AS Sbjct 364 TGARGLRSILEDILLDTMFDLPGLESVTEVVVNEEAVNSDAAPLMIHADASKEPAS 419 >sp|Q9JTX8|CLPX_NEIMA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=clpX PE=3 SV=1 Length=414 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 281/406 (69%), Positives = 325/406 (80%), Gaps = 8/406 (2%) Query 15 CSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHR-------ERSALPTP 67 CSFCGKS+ V+ LI G + +ICDECV C +I+ E+ + P E LPTP Sbjct 8 CSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHEDGNDGTPSESAGGEPEESGKLPTP 67 Query 68 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 127 EI +L+D+VIGQEQAKK LAV+VYNHYKRLR+ VEL KSNILLIGPTGSGKTL Sbjct 68 AEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHPKARANVELSKSNILLIGPTGSGKTL 127 Query 128 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEID 187 LA++LAR LDVPF MADATTLTEAGYVGEDVE II KLL KCD+DV+KAQRGIVYIDEID Sbjct 128 LAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEID 187 Query 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFIC 247 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVA+VPPQGGRKHP QEF+ VDT+ ILFIC Sbjct 188 KISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDTTNILFIC 247 Query 248 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGR 307 GGAFAGL+KVI R E G GIGFGA+V +K + A +L VEPEDLIKFGLIPE IGR Sbjct 248 GGAFAGLEKVIRQRTEKG-GIGFGASVHSKDENADITKLFGIVEPEDLIKFGLIPELIGR 306 Query 308 LPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 367 LPV+ATL EL E+ALI IL EPKNAL KQYQALF +E V+LEF + AL +IA++AM RKT Sbjct 307 LPVIATLEELDEDALINILTEPKNALVKQYQALFGMENVELEFEEGALRSIARQAMERKT 366 Query 368 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413 GARGLRSIVE LLDTMY LP ++ ++KVV+ ++VI+ +P L++ Sbjct 367 GARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKAVIEEGREPELVF 412 >sp|Q8ZJJ5|HSLU_YERPE ATP-dependent protease ATPase subunit HslU OS=Yersinia pestis OX=632 GN=hslU PE=3 SV=1 Length=443 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 70/100 (70%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ++AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDSHIIGQDKAKRAVAIALRNRWRRMQLNEELRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 95/215 (44%), Gaps = 59/215 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI ++ DVS EGVQ+ LL L+EG + KH Sbjct 249 QHGIVFIDEIDKICKRGQTSG--PDVSREGVQRDLLPLVEGCTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 V T ILFI GAF V + SD Sbjct 297 -VKTDHILFIASGAF---------------------QVSSPSD----------------- 317 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 LIPE GRLP+ L L+ + +IL EP +LT+QY+AL EGV +EF E + Sbjct 318 ---LIPELQGRLPIRVELQALTTDDFERILTEPSASLTEQYKALMATEGVTIEFTREGIR 374 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYD 386 IA+ A GAR L +++E + D YD Sbjct 375 KIAEAAWQVNERTENIGARRLHTVLERLMEDISYD 409 >sp|Q16CY2|HSLU_ROSDO ATP-dependent protease ATPase subunit HslU OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=hslU PE=3 SV=1 Length=435 Score = 93.6 bits (231), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 106/235 (45%), Gaps = 64/235 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITR--DVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 234 Q GIV++DEIDK+ KSD TR DVS EGVQ+ LL LIEGT + KH Sbjct 241 QNGIVFLDEIDKVCAKSD----TRGGDVSREGVQRDLLPLIEGTTVST------KHGP-- 288 Query 235 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPED 294 + T ILFI GAF +P D Sbjct 289 ---IKTDHILFIASGAFH------------------------------------IAKPSD 309 Query 295 LIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEA 354 L+ PE GRLP+ L L+EE ++IL E NALT QY AL E V + F ++ Sbjct 310 LL-----PELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGTEEVTVSFTEDG 364 Query 355 LDAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVID 404 + A+AK A GAR L +++E + + P E++++D + +D Sbjct 365 IAALAKIAAEVNQSVENIGARRLYTVMERVFEELSFSAPDRAG-EEIIVDAAFVD 418 Score = 93.2 bits (230), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 65/104 (63%), Gaps = 1/104 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +AVA+ N ++R + D E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDRFIIGQNDAKRAVAVALRNRWRRKQLADDLRD-EVYPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 T ++ LA+L PF +AT TE GYVG DVE II+ L+ Sbjct 64 TEISRRLAKLARAPFLKVEATKFTEVGYVGRDVEQIIRDLVDNA 107 >sp|Q5P503|HSLU_AROAE ATP-dependent protease ATPase subunit HslU OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=hslU PE=3 SV=1 Length=442 Score = 93.6 bits (231), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD +++GQ +AKK +A+A+ N ++R + + E+ NIL+IGPTG GK Sbjct 5 TPPEIVSELDKHIVGQGKAKKAVAIALRNRWRRAQVEEPLRS-EITPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LARL + PF +AT TE GYVG DV+ II+ L Sbjct 64 TEIARRLARLANAPFIKIEATKFTEVGYVGRDVDTIIRDL 103 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 72/235 (31%), Positives = 108/235 (46%), Gaps = 60/235 (26%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV++DEIDK++ +S+ DVS +GVQ+ LL L+EGT + ++ Sbjct 248 QNGIVFLDEIDKVASRSEGQGA--DVSRQGVQRDLLPLVEGTTIST-----------KYG 294 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLI 296 + T ILFI GAF H LA+ P DLI Sbjct 295 MIKTDHILFIASGAF--------H--------------------------LAK--PSDLI 318 Query 297 KFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALD 356 PE GRLP+ L LS E IL + L +QYQAL +GV LEF D+ + Sbjct 319 -----PELQGRLPIRVELESLSVEDFQCILTQTDACLVRQYQALLATDGVTLEFTDDGIR 373 Query 357 AIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQ 406 +A+ A GAR L +++E L + ++ + ++K+++D +D + Sbjct 374 RLAEIAYQVNEKTENIGARRLYTVMEKLLEEISFEAGRI-GLDKLLVDAPYVDAR 427 >sp|P57968|HSLU_PASMU ATP-dependent protease ATPase subunit HslU OS=Pasteurella multocida (strain Pm70) OX=272843 GN=hslU PE=3 SV=1 Length=443 Score = 93.2 bits (230), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 107/233 (46%), Gaps = 62/233 (27%) Query 177 QRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 236 Q GIV+IDEIDKI +K + DVS EGVQ+ LL L+EGT + KH Sbjct 249 QNGIVFIDEIDKICKKGEYSGA--DVSREGVQRDLLPLVEGTTVST------KHGM---- 296 Query 237 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQV-EPEDL 295 V T ILFI GAF QV P DL Sbjct 297 -VKTDHILFIASGAF-------------------------------------QVARPSDL 318 Query 296 IKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEAL 355 I PE GRLP+ L+ LS +IL EP +LT+QY+AL EGV++EF E++ Sbjct 319 I-----PELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMATEGVNIEFTGESI 373 Query 356 DAIAKKAM-----ARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 403 IA+ A GAR L +++E + ++ M+ + V IDE+ + Sbjct 374 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQG-QVVRIDEAYV 425 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 125 TP EI + LD ++IGQ AK+ +A+A+ N ++R++ + E+ NIL+IGPTG GK Sbjct 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGK 63 Query 126 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKL 165 T +A LA+L + PF +AT TE GYVG++V++II+ L Sbjct 64 TEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103 >sp|Q8FY12|HSLU_BRUSU ATP-dependent protease ATPase subunit HslU OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=hslU PE=3 SV=1 Length=434 Score = 90.9 bits (224), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (3%) Query 66 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLR-NGDTSNGVELGKSNILLIGPTGSG 124 +P EI + LD ++IGQ+ AK+ +A+A+ N ++R + G E+ NIL+IGPTG G Sbjct 5 SPREIVSELDRFIIGQKDAKRAVAIALRNRWRRQQLEGQMRE--EVMPKNILMIGPTGVG 62 Query 125 KTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQR 178 KT ++ LA+L PF +AT TE GYVG DVE II+ L++ V++ +R Sbjct 63 KTEISRRLAKLAGAPFVKVEATKFTEVGYVGRDVEQIIRDLVEIAITLVREKRR 116 Score = 87.8 bits (216), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 106/235 (45%), Gaps = 65/235 (28%) Query 164 KLLQKCDYDVQKAQR-----GIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 218 KLL + D VQ+A R GIV+IDEIDKI+ + VS EGVQ+ LL L+EGT Sbjct 223 KLLDQ-DQIVQEALRVSEDEGIVFIDEIDKIAAREGGSGA--GVSREGVQRDLLPLVEGT 279 Query 219 VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKS 278 A ++ V T ILFI GAF H V S Sbjct 280 TVAT-----------KYGPVKTDHILFITSGAF--------H-------------VSKPS 307 Query 279 DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQ 338 D L+PE GRLP+ L+ L+ E +IL E + +L KQY Sbjct 308 D--------------------LLPELQGRLPIRVELSALTREDFRRILTETEASLIKQYI 347 Query 339 ALFNLEGVDLEFRDEALDAIAK-----KAMARKTGARGLRSIVEAALLDTMYDLP 388 AL E V LEF D+A+DA+A A GAR L++++E L + + P Sbjct 348 ALMETEEVKLEFSDDAIDALADIAVDLNATVENIGARRLQTVMEKVLDEISFTAP 402 >tr|A0A5P8YB42|A0A5P8YB42_YERPE ATP-dependent protease OS=Yersinia pestis OX=632 GN=YPO3902 PE=3 SV=1 Length=507 Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 48/188 (26%) Query 28 LIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDY-VIGQEQAKK 86 LI + ++ D + +C + E +A + P+P NHLD + +IGQ QAK+ Sbjct 148 LIPQGNSWVADHLLAVCGFLQGE--NPLAQGQPFEPAPSPD---NHLDLHDIIGQSQAKR 202 Query 87 VLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 146 L +A G N+LL+GP G+GKT+LA L LL P T D Sbjct 203 ALEIAAA-----------------GGHNLLLLGPPGTGKTMLATRLTGLLP-PLT--DQE 242 Query 147 TLTEAGYVGEDVENIIQKLLQKCDY----------------------DVQKAQRGIVYID 184 L A G N + + + ++ A G++++D Sbjct 243 ALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLD 302 Query 185 EIDKISRK 192 E+ + R+ Sbjct 303 ELPEFERR 310 >tr|A0A5P8YCE6|A0A5P8YCE6_YERPE ATP-dependent zinc metalloprotease FtsH OS=Yersinia pestis OX=632 GN=ftsH PE=3 SV=1 Length=644 Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (35%), Positives = 41/78 (53%), Gaps = 6/78 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +L++GP G+GKTLLA+ +A VPF + E +VG + Q + Sbjct 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 241 Query 175 KAQRGIVYIDEIDKISRK 192 KA I++IDEID + R+ Sbjct 242 KAAPCIIFIDEIDAVGRQ 259 >sp|Q168A2|RUVB_ROSDO Holliday junction branch migration complex subunit RuvB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=ruvB PE=3 SV=1 Length=340 Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/149 (27%), Positives = 68/149 (46%), Gaps = 31/149 (21%) Query 52 IKEVAPHRERSALPTPHE--IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVE 109 + ++ P LP H+ +R + +GQ +A+ L V + + +R G+ + Sbjct 1 MSDIDPTVRADPLPEDHDRALRPQMLSEFVGQAEARANLKVFIASARQR---GEAMD--- 54 Query 110 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 169 + L GP G GKT LA+ +AR L V F M L +AG D+ I+ L Sbjct 55 ----HTLFHGPPGLGKTTLAQIMARELGVGFRMTSGPVLAKAG----DLAAILTNL---- 102 Query 170 DYDVQKAQRGIVYIDEIDKISRKSDNPSI 198 +R +++IDEI ++ NP++ Sbjct 103 ------EKRDVLFIDEIHRL-----NPAV 120 >tr|A0A0H3GCZ6|A0A0H3GCZ6_BRUSU ATP-dependent zinc metalloprotease FtsH OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=ftsH PE=3 SV=1 Length=644 Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (52%), Gaps = 6/77 (8%) Query 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 174 +LL+GP G+GKTLLA ++A +VPF + E +VG + Q + Sbjct 193 VLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEM-FVGVGASRVRDMFEQ-----AK 246 Query 175 KAQRGIVYIDEIDKISR 191 K I++IDEID + R Sbjct 247 KNAPCIIFIDEIDAVGR 263 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1518094230 Database: prot.fasta Posted date: Mar 11, 2025 3:44 PM Number of letters in database: 6,750,009 Number of sequences in database: 21,727 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40